LOCUS       DATCMF010000001         2294 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_529974, whole genome shotgun sequence.
ACCESSION   DATCMF010000001 DATCMF010000000
VERSION     DATCMF010000001.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2294)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2294)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2294
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_529974"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..710)
                     /locus_tag="VIL14_00005"
     CDS             complement(<1..710)
                     /locus_tag="VIL14_00005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522119.1"
                     /translation="MSRKRDGIDIPLSNNVQSRFVSNHLEYVRLIHNALPELDLDEIN
                     TATEFLNNKFGAPIIIDSMTGGTPEALKINSRLGQLAESFAFGMGLGSQRAGLKSTSL
                     AETYSVARKNAPSAFLIANIGGAQLAEGLDIKMIEKIISMIDANALVIHLNPLQELIQ
                     PEGEPKYRGVLEKITKIRESISIPIIVKEVGSGISREVALKLQKANINCINIAGAGGT
                     SWAGVEKIRATKVKNDVK"
     gene            complement(758..1552)
                     /locus_tag="VIL14_00010"
     CDS             complement(758..1552)
                     /locus_tag="VIL14_00010"
                     /EC_number="2.7.4.26"
                     /inference="COORDINATES: protein motif:HMM:NF040647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isopentenyl phosphate kinase"
                     /protein_id="HEY8522120.1"
                     /translation="MKPKLVIIKLGGSVITFKEKPLSANYKAINNISKILSKLEIPLI
                     IVHGGGSYGHYWSVKFDMHTKLQKYHPHGISVVHSSMLTLNNIIINALDKHRLNPYGI
                     PPSSLLINGQPNSNKIIELKKMTKHNITPVTYGDAVYIKNNKYSILSGDVLMTMLSEV
                     LNPSKIIFAINVEGLYNNMKDKKIIKEIKFEKDKTYKNKQMKINLMSNINIDDVTGGI
                     KRKVEEATKIAKTGKDVIFINGLDSIQIQNAVQDKNFKGTIFKGKI"
     gene            complement(1560..>2294)
                     /gene="mvk"
                     /locus_tag="VIL14_00015"
     CDS             complement(1560..>2294)
                     /gene="mvk"
                     /locus_tag="VIL14_00015"
                     /EC_number="2.7.1.36"
                     /inference="COORDINATES: protein motif:HMM:TIGR00549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004496 - mevalonate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0016126 - sterol biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019287 - isopentenyl diphosphate
                     biosynthetic process, mevalonate pathway [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mevalonate kinase"
                     /protein_id="HEY8522121.1"
                     /translation="VLPQYTETYGINIKIYSEIPPGVGLGSSAALSVAGVAAILGLYS
                     RVKKKDEILDIAIETERIIHKNSSGADCTVSTYGGLLYYQRNTNTRSLNLSKELSFII
                     INTGLKHSTGQLVSIVNSFRENNLCEFHNLSNNVYRICEKAIKALEEGNFLNIGKLMN
                     ENQIILERIGVSTTEINNIINLSQQYGAIGSKLTGAGGGGCVLALVNHKDQDYFLSSM
                     KKKGYECFPIFIENQGLKVNIKSSNF"
BASE COUNT          683 a          408 c          297 g          906 t
ORIGIN      
        1 tccttaacat cattttttac tttagtagct ctaatttttt ctactcccgc ccagctggta
       61 cctccagctc cagcaatatt aatacaattg atatttgctt tttgcagttt taaagcaact
      121 tctcgtgaaa taccggaacc aacttcttta actattattg gaatgcttat actttctcta
      181 attttagtta tcttttccaa aacacctctg tattttggtt caccttctgg ttgtattaat
      241 tcctgtaatg gattaagatg aatcaccaaa gcgttagcat ctatcattga aataattttt
      301 tcaatcatct taatatctaa tccttctgca agttgtgcgc ctccaatatt agctattaaa
      361 aaagcagaag gtgcattttt tctagctaca gaatatgttt ctgctaaaga agtacttttt
      421 agcccggctc tttgacttcc taatcccatt ccgaatgcaa atgattcagc taattgtcct
      481 aaccgtgaat tgatttttaa ggcttctggt gttccgcctg tcatagagtc gattataatt
      541 ggagcaccaa acttattatt taagaattct gtagcagtat ttatctcatc caaatctagc
      601 tcaggtaatg cgttatgaat aagtcgaaca tattccaaat gattagatac aaatctcgat
      661 tgaacattat tagaaagagg aatgtctatc ccatcccttt ttctactcat tattaagtca
      721 atttcaggat tatttgactc agacgtataa tatatcttta tatcttaccc ttaaaaatag
      781 tacctttaaa atttttatct tgtactgcgt tttgaatctg tatagaatcc aacccattta
      841 taaaaataac atcttttcca gttttagcta tctttgtggc ctcttctact ttccttttga
      901 ttccaccagt tacatcatcg atatttatat tgctcattag attaattttc atttgtttgt
      961 ttttataggt tttatccttt tcaaatttta tctctttaat aattttttta tctttcatgt
     1021 tgttatatag accctctaca ttaattgcaa aaataatttt ggaaggattt agaacttctg
     1081 ataacattgt cattaacaca tcaccagaca atatagaata tttgttattt tttatatata
     1141 cagcatctcc atatgtgact ggggttatat tatgttttgt catttttttt aattctatga
     1201 ttttgttact attaggttgg ccatttatca ataatgaaga aggaggtatt ccgtagggat
     1261 tcaatctgtg tttatctaag gcatttatta ttatattgtt aagtgttaac atagatgaat
     1321 gaacaacaga aattccatgc ggatgatatt tttgtaattt ggtatgcata tcaaatttta
     1381 cagaccagta atgtccatat gagcctcctc catgaactat tattaatggg atttctaatt
     1441 tacttaaaat ttttgagata ttgttgattg ctttatagtt tgcagacaac ggtttctctt
     1501 taaaggtaat aactgatcca ccaagtttta ttataacgag cttaggtttc aatgatattt
     1561 taaaaattac tagatttaat attaactttc aagccttgat tctctataaa tatgggaaaa
     1621 cattcatatc cttttttttt catactactt aagaaatagt cttgatcttt atgatttacc
     1681 agtgctaata cacatcctcc acctcctgca cccgtcaact tagatcctat ggctccatat
     1741 tgttgactca aattaattat attgtttatc tctgtagttg atactccaat tcgctctaaa
     1801 ataatttgat tttcattcat taatttacca atatttaaga aattcccctc ttctaatgct
     1861 tttattgcct tctcacaaat tctatagaca ttatttgata aattatgaaa ttcacacaaa
     1921 ttattttcac gaaaactgtt tactatggat actaattgtc ctgtagaatg tttcaaacct
     1981 gtatttataa taataaaaga aagctctttg ctcaagttga gagatctcgt atttgtgttt
     2041 ctttgataat acaataatcc tccataagtt gacacagtac aatctgctcc agaagaattt
     2101 ttatgaataa tcctttcggt ttcaattgct atgtctaaga tttcatcctt tttcttaacc
     2161 ctactataaa gtcctagaat agcagcgact ccagctacac ttaaagctgc cgaagatcct
     2221 agccctactc caggtggtat ctctgagtat attttaatat ttattccata cgtttctgta
     2281 tactgaggta atac
//
LOCUS       DATCMF010000002         2645 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_530009, whole genome shotgun sequence.
ACCESSION   DATCMF010000002 DATCMF010000000
VERSION     DATCMF010000002.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2645)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2645)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2645
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_530009"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(154..819)
                     /locus_tag="VIL14_00020"
     CDS             complement(154..819)
                     /locus_tag="VIL14_00020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522122.1"
                     /translation="MPDWDNIVKSKKNVRSKDNTPIGNVIANYKDHILVIDDINSHTY
                     KIPKSYIEKYDGSELYLSINHQDLKILDEDFHKSNEPKSINDVLMDVFVKGLSYMSGT
                     IKIAIKNNDSLRIESEDKNIKLHIMDPSIFDIPLETVKDNKFDFLKYIKEAKEFAHKL
                     SENELTLFILNKNDENAITLGKNANPSFSKLITRSDDIQINSVRKSIKLASDINKDED
                     EEK"
     gene            complement(834..1091)
                     /locus_tag="VIL14_00025"
     CDS             complement(834..1091)
                     /locus_tag="VIL14_00025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522123.1"
                     /translation="MSHLNGNTDSNQDSRGSQTTQWADLISTLFDRLTGKEAVITYEF
                     DNLIVDIPKAAGPGGKELGSAKWTINGKLIIKAEAHSQSKY"
     gene            complement(1333..1632)
                     /locus_tag="VIL14_00030"
     CDS             complement(1333..1632)
                     /locus_tag="VIL14_00030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522124.1"
                     /translation="MTILQDDIYEITSILCKTFEIAGIERNYDDSFGKIGKILYRYGI
                     HHNPKELRIVFTLCMQEFFESIPQEEWKLNDPSFVKNSEKYAIEKFKEWFIEQVT"
     gene            1994..2614
                     /locus_tag="VIL14_00035"
     CDS             1994..2614
                     /locus_tag="VIL14_00035"
                     /inference="COORDINATES: protein motif:HMM:NF013718.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HEY8522125.1"
                     /translation="MTVFLLSINFKQDHPLIILDNSVNAFFLENSLNNYLREFMIYVT
                     FYGREYIWGPVLIALFLFGGVVGRKTAIITGLSIIILVLVGGEIKNIIDRERPELANN
                     MYLLEEESKKSYPSGHALIVSAGATGVVCLYRGTVRRKIISLLLVIEAGLVIFSRIYL
                     GVHYPLDIVAGILLGISVTFFFLGCQKQIDSLSKKIFSIIKTRKVT"
BASE COUNT          900 a          355 c          331 g         1059 t
ORIGIN      
        1 ctattacatt cggtaaacaa gtgtgaatta aataacaaat tttacagaat ataaatggat
       61 tatattttaa agaaaaatag agatcgactc aataaatata atgttattgc tataattagc
      121 taaatatatc tatttatagc aaccaatcaa cgattatttt tcttcgtctt cgtctttatt
      181 gatatcagat gctagtttaa tggattttct tacactatta atctgaatat catcacttct
      241 tgtaattaat ttagagaaag aaggatttgc attttttcct aatgtaattg cattttcatc
      301 gtttttatta agtataaaca aagtcaattc attttctgaa agtttatgag cgaattcttt
      361 agcttcttta atatatttta aaaaatcaaa cttattgtct tttacggttt ctagaggaat
      421 atcaaaaatt gatggatcca ttatatgtaa ttttatattt ttatcttcag attctattct
      481 taaagaatca ttatttttaa ttgctatttt gatagttcca ctcatataac ttaatccttt
      541 aacaaataca tccataagga catcattaat agattttggc tcattagatt tatgaaagtc
      601 ttcgtctaat atttttaaat cttgatgatt aatacttaaa tataattcag atccatcgta
      661 tttttctata taggatttgg gaatcttata tgtatgacta tttatatcat ctataacaag
      721 tatatgatct ttataattag caattacatt tcctattgga gtattgtctt ttgagcgtac
      781 atttttcttt gattttacta tgttatccca atctggcaat gaaaaatcat ccgttaatat
      841 ttactttgag aatgtgcttc agcttttatt attaattttc catttattgt ccatttagca
      901 gaccctagtt cttttccacc aggaccagca gcttttggta tgtctactat gagattatca
      961 aattcatatg ttattactgc ctctttacct gtcaatcggt cgaaaagtgt actaattaag
     1021 tctgcccact gagtagtttg gctacctcgg ctatcttgat tactatctgt attaccattt
     1081 aaatgactca tattttttag tgtataacat gttatataaa aattatatta ataatatttg
     1141 aggatcaatt gaacatatta taaagttttt taatttataa ttactatcta tattctaaca
     1201 gattatttct ttaagacgta ttatatcttg agaatttatt ttttatcttc ataaactaaa
     1261 aaattcataa aatgacaaat tttcaaaagt aaagtccatg tattaatgct taagattgag
     1321 cgaaaaatta tattatgtta cctgttctat aaaccattct ttaaattttt caatagcata
     1381 tttttcagaa ttcttaacaa aagatggatc gtttaatttc cactcttctt gaggaataga
     1441 ctcaaaaaat tcttgcatac ataaagtaaa tacaatacgt aattcttttg gattatggtg
     1501 tattccataa cgataaagaa tttttccaat tttaccaaat gaatcatcat aatttctctc
     1561 aataccggct atttcaaaag tcttgcataa tattgatgtt atttcatata tgtcatcttg
     1621 taatattgtc atatgatata ctaaacaata tcaactttat tttattttat gttcttagag
     1681 attattttta taattataac tacttgttgg ataccaagat atagattaca agaaatgcct
     1741 tagtaaacca acattcaatt tatacataat aattgcaatt caataaggaa tagatatagt
     1801 gaaacaataa atcaagtata aaaagttaaa attcagatct ctttaatttt ttaaactata
     1861 tgattatcac ttctcttttt ttactaagat ttttgataaa ttaacaaaat attaaaaccc
     1921 tcttgaagtg ttaatatata tgattaatat ttactttatt gcatttttta tccttttcat
     1981 ttcttttttc ctgttgaccg tattcttact ctcaataaat tttaagcaag atcatccctt
     2041 aataatatta gataattctg taaacgcatt ttttttagaa aactccttaa ataattattt
     2101 acgggaattt atgatctatg taacttttta tggaagagag tatatctggg gtcctgtctt
     2161 aattgcactg ttcctatttg gaggtgtggt aggaagaaaa actgctatta taactgggtt
     2221 atctatcata attttagtat tggtaggtgg agaaattaag aatataatag atagggagag
     2281 accagagtta gctaacaata tgtatctatt agaagaagaa tcaaaaaaat catatccttc
     2341 aggtcatgca ttaatagttt ccgctggtgc aactggagtc gtatgtttat atcgtggtac
     2401 cgtaagacgc aaaatcatat ctttactgtt agtcatagaa gcaggattag taattttttc
     2461 tcgaatatat ctgggcgtac attatcccct tgatatagtt gctggtattt tgttaggtat
     2521 ctcagtaact ttcttttttc taggatgtca aaaacaaata gacagtttat caaaaaaaat
     2581 attttctatt ataaaaacaa gaaaagtaac ataaattgat gtagaaagtt gttcaatttc
     2641 tgtta
//
LOCUS       DATCMF010000003         1602 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_331413, whole genome shotgun sequence.
ACCESSION   DATCMF010000003 DATCMF010000000
VERSION     DATCMF010000003.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1602)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1602)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1602
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_331413"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(577..1011)
                     /locus_tag="VIL14_00040"
     CDS             complement(577..1011)
                     /locus_tag="VIL14_00040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522126.1"
                     /translation="MEDSFIQLAKKLNKPFLEKDKDTLARTIEQSYNKIFSIISNLEK
                     SKESKPTVIELGNINGRYFALNLYYYQDEMDDDIPLTIKELLPTISPVRIDLMATLSE
                     IPNDEAQNYIKVGGIYDDGDIHSHYVDEIVQEDNGLRSIDEK"
BASE COUNT          615 a          180 c          203 g          604 t
ORIGIN      
        1 ataatgaaga aaatgaagag acaaattata aatacaaatg ccaagagtgt ggaattaact
       61 ttgggaataa tataggagat atggaactgc ataagttaac tgtacattta caaaaaggag
      121 atatggaatt aaaataatta atagtataca atttattgat ggtataatat cttgatattt
      181 tttgttgttg tttttgagct atgttaattc atggatagat ttagctgtga atatcatact
      241 atttcccatt taataaatta atagcataac tggattcata tctgcttggt cccattgaat
      301 aaataaatga attcaataaa tttaatttca tattttaatc ttaagtaatt tcaaaatcag
      361 aatttcaaat aattttttta aatatgatat aagaaattca tagggtaaaa ttagaccatc
      421 tacaacaatc aatgggaaaa attcaaaata ttcctaatac caagaaacta gagattataa
      481 atgaatttct agaatatatg aaagaagtaa tgattattca gaacataatc aaaataacaa
      541 tttgaaggtt gtaatagata gcatttagta atttttttat ttctcatcta tagaacgtag
      601 tccattatct tcttgtacaa tctcatctac ataatgtgaa tgaatatccc catcatcata
      661 aatgccacct actttgatat aattttgtgc ttcatcattt ggtatttctg atagagtcgc
      721 cattaggtct atgcgaacag gagaaatagt aggtaataat tccttaatag tcaaaggtat
      781 atcatcatcc atttcatctt gatagtaata aagattcaag gcaaagtatc taccattaat
      841 attacctaat tctattactg taggtttaga ttctttggat ttttctaaat tagatataat
      901 agaaaatatt ttgttatagc tttgctcgat agttcttgct aaggtatctt tatctttttc
      961 caaaaacggt ttgtttaatt ttttagctaa ttgtatgaat gaatcttcca ttcttattat
     1021 catacacgtc taaatctttt ttaaactaat gatctatatt tatactctgt tttttactat
     1081 aatgtaattc agatgactca tccacataat ccatatctga aaaataaata attagttttg
     1141 taatcttcta cactatctga tatcaatgat acaaattctt ttcaaaatgg tattgaatgc
     1201 tatttaaaat tttatattac gaataattta attattaata agttcctatt aacttatata
     1261 tttatatttt ttacttttgt agttgtttat gagattaatt tcactaaaac aataatatta
     1321 gtgcttaatt ttatgttatt tatagtaatg ataaattcaa aacaaatgaa taacaaaggc
     1381 agaaaaatta taggaaaaat atacaagatc attttctact gtatgactag tttaaaacta
     1441 gaatatgaaa atcaatatga ccttatttcc taatctgata atattaaacg agggaaaatt
     1501 atataaaaat aacaatttga aaatagatca gaataggaca gaattgtttt aaaaggattt
     1561 tgtaatataa gatagatgat gagaataata gtttggagaa tt
//
LOCUS       DATCMF010000004         1725 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_331465, whole genome shotgun sequence.
ACCESSION   DATCMF010000004 DATCMF010000000
VERSION     DATCMF010000004.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1725)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1725)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1725
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_331465"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1037
                     /locus_tag="VIL14_00045"
     CDS             <1..1037
                     /locus_tag="VIL14_00045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522127.1"
                     /translation="MRIIPMQESGQNPTSPHGPWITPDGKKMITPNDFTDDTTLTDFS
                     SKLTQGEIQNRTETGHMPIATGMMPDGKTAYVSNFLSSTIDVIDMNSGRVVKTIDLAD
                     KGNALPIQTPVSPNGQYIVTANTLTATIAITDTDTNTIVKTLPCDPGCHGVNFGAKEG
                     GGGYYAYVSSKFSNRMIVVDGDPNNDGNPEDAKIAGNVLLTGKYANDGSPMFNTDDTI
                     VKHAGMGGQGVYPIPNVNPGWVEKLDLSWNLTSEQRDPITSFNQLNKQPLQANNNGDS
                     TRNDVNSESIQHQQQEKTTPEIIEEKIAQLQQQSVIQSIAPNMVTEQAKAPSSDRLND
                     IISSIPVPSP"
     gene            complement(1347..1538)
                     /locus_tag="VIL14_00050"
     CDS             complement(1347..1538)
                     /locus_tag="VIL14_00050"
                     /inference="COORDINATES: protein motif:HMM:NF013595.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522128.1"
                     /translation="MFRFLIKLENSFRHLALKGPARGNLKDLKNIAIDPQGRIFVCDT
                     GNSRIQIFSQNDYALQTKK"
BASE COUNT          602 a          305 c          268 g          550 t
ORIGIN      
        1 taatgagaat aatacctatg caggaatcag gacaaaatcc cacttcacct catggcccat
       61 ggattactcc agatggaaaa aaaatgatca caccgaatga ttttaccgat gatacaacac
      121 taactgattt ctcaagtaaa ttaacacagg gagaaattca aaatcgaaca gaaactggtc
      181 atatgcctat tgcaacagga atgatgcctg atggaaagac tgcctacgta tccaatttcc
      241 tttcaagtac aatagatgta atagatatga atagcggaag ggtcgtaaaa acaatagatt
      301 tagccgataa aggaaatgct ttacctattc agactccggt aagtcccaat ggacaataca
      361 ttgtgactgc taacacatta acagcaacta ttgctattac tgatactgat acaaatacca
      421 ttgtgaaaac ccttccatgc gatccaggct gtcatggagt aaattttggc gctaaagaag
      481 gaggaggagg ttattatgca tatgtatcaa gtaaattctc taatagaatg attgttgttg
      541 atggagatcc caataatgat ggtaatccag aggatgctaa aattgctgga aatgtattgt
      601 taacaggaaa atatgctaat gatggcagtc caatgtttaa taccgatgat acaatagtca
      661 aacatgctgg tatgggagga caaggtgttt atccaatacc caacgttaat cctggctggg
      721 tcgaaaagtt agatttaagt tggaatctaa cttctgaaca aagagatcca atcacatcat
      781 ttaatcaatt aaataaacaa ccactccaag caaacaataa tggcgattca actaggaatg
      841 acgttaacag tgaatcaatt caacatcaac aacaagaaaa aacaacaccg gaaattatag
      901 aagaaaaaat agctcaatta cagcaacaat cagttattca atcgattgct cctaacatgg
      961 ttacagaaca agcaaaggct ccttcatcag acagattgaa tgatattatt tcttcaatac
     1021 cagttccttc tccataatta ttttagtaaa tgtcttcttc tgtttcgtaa ttgaagatca
     1081 gaactacttt tccacactta gaattatatg ctacaaaata attgatggtt aacacatctt
     1141 ataatgtcca tttaaaaaat gttttctata gttatatact ttatttccta aatttaactc
     1201 tttattttat agaagtatat ttatgtctag agtaaggtta tatatgtttt ttgttcaagt
     1261 cgtaaatcaa tatatgtgtc tctagatatg ttttccttta aattttattt actttatact
     1321 agtattaatg aagtattcaa aatatttcat ttttttgttt gtaacgcgta atcattttgt
     1381 gaaaatattt gaattcttga atttcctgta tcacatacaa aaatcctccc ttgaggatct
     1441 attgcaatat tttttaggtc ttttaaattg cccctcgccg gtccctttag agccaaatgt
     1501 cgaaatgaat tttccagttt tattaaaaat ctgaacatgg attgctattt tagcgactac
     1561 aaataccact cctgcttttt catcaatatt acttcctggt aatatcagtc aaaatttccc
     1621 tgacccattt ccatacgacc cccattgagt tacgaaatta aactcaggag tttctcatgt
     1681 cagttatata catattatta ttggcatcaa aaacaatgcc atgtg
//
LOCUS       DATCMF010000005         1890 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_530236, whole genome shotgun sequence.
ACCESSION   DATCMF010000005 DATCMF010000000
VERSION     DATCMF010000005.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1890)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1890)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1890
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_530236"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(66..416)
                     /locus_tag="VIL14_00055"
     CDS             complement(66..416)
                     /locus_tag="VIL14_00055"
                     /inference="COORDINATES: protein motif:HMM:NF025000.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase family protein"
                     /protein_id="HEY8522129.1"
                     /translation="MELSEFNSIYNEIESKYPEYEIKFLSKQKKNRTRDIGAGRHFKH
                     SVRDRFRMLLVYYKLYITHILSGFLFDLDQSNVHRDIRYMEPLVSSCIPLPQKLYNLT
                     RRLRTVQEVEIYFP"
     gene            complement(564..>1890)
                     /locus_tag="VIL14_00060"
     CDS             complement(564..>1890)
                     /locus_tag="VIL14_00060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522130.1"
                     /translation="YVLIAVLSLDTLLNQTGDLIGKPLKTFGGIVLFITLSIITMIGQ
                     IFVLQFVGKKSEEIRKKNGKIRLMHRFVSISQYTIITIFVFLILEIIIDQNYLPISSM
                     LVALISYMLSTILMAVFTGVFLSWYKNNRNSVLVLIYGLSFATAAIASFAILLVFTYQ
                     FSEKLFISILPTSPGTFLSTEEGSIWKIFAKTYQYNDMASFFLKWGGTALILYHYSYK
                     IGRAKYWFLLSLPLLYFSTLMVYHLHIYEPHEEFEQLIFYGVSALNSTFGGILFYIAF
                     KLTVKNFKGNELFASYLIMAGYGFMLFFSGTQSVLTNMAYPPFGFSTVSSYGLGSYLI
                     LIGLSLSAISISKDEQLKEMIKNSTMAESKFLHSLGMSESERENKLLKDIVIKAKQQK
                     ENLEKDTGIELSISEEDIKEFVRELEVNHNDNGKDKDNDNKEDEEKGNQ"
BASE COUNT          620 a          298 c          305 g          667 t
ORIGIN      
        1 atgaaagtaa ccatgccagc tcgtctttgt atctcatgtt ctgttgaatc tataaatgat
       61 ttaaatcatg gaaagtatat ttctacttct tgtacagttc ttagccttct tgtaagattg
      121 tataactttt gaggtaatgg aatacaactt gatactagag gttccatata gcgtatatct
      181 ctatgtacat tgctttgatc tagatcaaac agaaaaccag atagtatatg tgttatgtac
      241 agtttatagt atactaaaag catgcgaaat ctgtctctta ctgaatgttt gaaatgtctt
      301 cctgcgccta tatcacgagt tctattcttc ttttgtttag ataagaattt tatctcatat
      361 tctggatatt tagactctat ttcattataa attgaattaa attcagataa ttccaatcca
      421 gtaaatgacc tgaaaaataa cggtttttag ataacctatc ataatttagt aaattaagaa
      481 atcattgcag aaacaaggaa tatagctgta agctttttaa ttatgcaaag gatctaatta
      541 tgtttctgtt cttattcttt gaattattga ttaccttttt cctcatcctc tttattgtca
      601 ttatccttat ccttaccgtt gtcgttatga ttgacttcta attctcttac aaattctttg
      661 atatcttctt cactgatgga taattctatt cctgtgtctt tttctagatt ctctttttgt
      721 tgtttggctt tgattacgat atcttttaac aatttatttt cacgctcgga ctctgacatt
      781 ccaaggctat gaagaaattt ggattcagcc attgttgaat ttttaatcat ttcttttaat
      841 tgttcgtcct ttgaaattga gatggccgat aatgaaagac cgataagtat cagatatgat
      901 ccaagaccgt atgaggaaac agtggaaaat ccaaaaggcg ggtatgccat atttgttaga
      961 accgattggg tgccagaaaa gaataacata aatccatatc cagccataat taaataactt
     1021 gcaaataatt cattgccttt aaagttcttg actgtaagct tgaatgctat gtaaaacaaa
     1081 atccctccaa atgttgagtt caaagcactg acaccgtaga atattagttg ttcaaattct
     1141 tcatgtggtt catagatgtg aagatgatac accattaaag tggaaaaata caaaagcggt
     1201 agactgagta ggaaccagta ttttgctcgt ccaatcttgt aagaatagtg atataaaatt
     1261 aatgctgttc caccccattt aaggaaaaaa gatgccatgt cattatattg ataagttttg
     1321 gcaaagattt tccagattga accttcctca gtagaaagaa aagttccagg agatgtggga
     1381 aggatggaga taaaaagttt ctcactaaat tgataggtaa atactaacag tattgcaaat
     1441 gatgctattg cggcagttgc aaaagacaat ccatatatga gtactaaaac tgaattgcga
     1501 ttatttttat accatgaaag aaatacgcca gtaaatacgg ccatcagaat agtacttagc
     1561 atgtaactta tcagagccac tagcattgag gatatcggca aataattctg gtctattatt
     1621 atttctaaga taagaaatac aaatatggta attattgtat attgacttat agaaacaaat
     1681 ctatgcatta atcttatttt cccatttttt ttcctaatct cttcgctttt tttacctaca
     1741 aattgtagaa caaatatctg acctatcata gttattattg ataaggtgat gaaaagaaca
     1801 attcctccga aggtttttag cggtttacca attaagtcac ctgtttgatt taacaatgtg
     1861 tctaaggata ggacagcgat aagaacatag
//
LOCUS       DATCMF010000006         1661 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_331555, whole genome shotgun sequence.
ACCESSION   DATCMF010000006 DATCMF010000000
VERSION     DATCMF010000006.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1661)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1661)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1661
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_331555"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(623..1045)
                     /locus_tag="VIL14_00065"
     CDS             complement(623..1045)
                     /locus_tag="VIL14_00065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522131.1"
                     /translation="MKLQIQESHSLAANILIIISLVLLLSYGTDVILHNFNGKGFLLM
                     DTITRSIVFGGIAVAFSIIAFILSLREKLFIVSTFLIVNGIIMITGGLLIAFNIIKSS
                     ENALLISMISGIIVISLGIWKKIGFRNIVSGKNTLTHH"
     gene            complement(1233..1595)
                     /locus_tag="VIL14_00070"
     CDS             complement(1233..1595)
                     /locus_tag="VIL14_00070"
                     /inference="COORDINATES: protein motif:HMM:NF042831.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6766 family protein"
                     /protein_id="HEY8522132.1"
                     /translation="MKNKLGFLWVTLALFVISLSAHWIFAWFSYLEEQKEHNQPVAIS
                     NYFNMTFRDTMENWQSEFLQLIWQVAGLSFLWYIGSPQSKEGDERKEEKMDLIIKMLD
                     PKNATIILKELETKYPKK"
BASE COUNT          617 a          235 c          205 g          604 t
ORIGIN      
        1 aattctattc aacatatcta agcctgcctc aagaaattat acaataatat atgaggcgaa
       61 aaattagagc agaaacgtat tgagctaaag aacattagaa aaatatctag accatagaga
      121 ttgttattca tttattatgt ttatatcaat ataaagaatt aaagcgtgca tatctgacac
      181 tgaaacgatg tttacatgtt tacataatct tgtagagtgt aagtttttct attcaattct
      241 ggatggatga actgtatagg attaactaat ttattttcat cacaagattc atatgaaaaa
      301 atgcatattc aatcagtgtt agcagtttaa tactcaaaaa tcaacagttt tttatcctac
      361 ctgatcctat cattaatctc tcatcacaac tttaagccat caatcatcat gggtgttaaa
      421 gaataacctt taacacccca aacatataat atttttattt ttttattgtg catgttatat
      481 aacagacttc tattcatttg aagaagtaat aatcaaaaat gagtgttacc aggcaaatct
      541 aacacccatt tttcgaaacg aaaaaatcat tttaaaacct ccaatattat taaaattttt
      601 taaaaagtag aaaattgttg atttaatgat gtgttaaagt attttttccg cttacaatat
      661 ttctaaatcc aatttttttc catataccta aagaaattac tattattcca ctaatcattg
      721 atataagtaa tgcattttca gaacttttta taatattgaa agctattagc aaaccaccgg
      781 taatcataat tattccattt acaattaaga atgtcgatac aataaataat ttttctctga
      841 gtgataggat aaatgcgatt attgaaaatg ctactgctat accaccaaaa acaatacttc
      901 tagtaattgt atccattaga agaaatcctt ttccattaaa attgtgtaga ataacatctg
      961 taccataact caataacaaa acaagtgata taataattag tatatttgct gcaagagaat
     1021 gggattcctg aatctgcaat ttcatttcat tattatatgg agattatttc taataagact
     1081 ttaaggaaaa ttaaatacaa tagatattat aatggataaa gtattatcaa attataatct
     1141 gtttattatg ataaattcta aagagaaata tttgtagtaa aatttggaca gatttgacaa
     1201 aagtaaattt atcctaaatt acatttgttt atctatttct ttgggtattt agtctctagt
     1261 tcttttaaaa ttatcgtggc attctttgga tctagcattt taattatcaa atccattttt
     1321 tcttcttttc tttcgtcacc ttctttagat tgtggtgagc caatatacca gagaaatgag
     1381 agtcctgcta cttgccatat taactgtaag aattccgatt gccaattttc catagtatct
     1441 ctgaaagtca tattaaaata attagaaatt gctacaggtt ggttatgttc tttttgttct
     1501 tctagatagg aaaaccatgc aaaaatccaa tgagcactta aagatattac aaatagagcc
     1561 aaagtaaccc atagaaatcc taatttattt ttcaaggttt ctaaagatta aaggttactt
     1621 attgaatata tagattatat gacaatatat agtaatataa a
//
LOCUS       DATCMF010000007         2021 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_530270, whole genome shotgun sequence.
ACCESSION   DATCMF010000007 DATCMF010000000
VERSION     DATCMF010000007.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2021)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2021)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2021
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_530270"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..272
                     /locus_tag="VIL14_00075"
     CDS             <1..272
                     /locus_tag="VIL14_00075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522133.1"
                     /translation="IRRRSSSRYRYRKNDCKMIVTMVAHRGWRPDDKTVYYIATYATP
                     KTPADMIGEPYVKSDEKLIGMPVVVDLFQFTTGINGSGLLEMYIL"
     gene            complement(1082..1258)
                     /locus_tag="VIL14_00080"
     CDS             complement(1082..1258)
                     /locus_tag="VIL14_00080"
                     /inference="COORDINATES: protein motif:HMM:NF013522.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA];
                     GO_process: GO:0006725 - cellular aromatic compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tautomerase family protein"
                     /protein_id="HEY8522134.1"
                     /translation="MPIVTVSMYSGRTQREKDRLAEAMTEDIAKILNIKKEEVIIVFQ
                     EAPHGNWYSSGVRL"
     gene            1473..1913
                     /locus_tag="VIL14_00085"
     CDS             1473..1913
                     /locus_tag="VIL14_00085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522135.1"
                     /translation="MIRNSLSNNIFSHRTSNDKNNAGLKKNKQLEFSSKHIVTKSITF
                     NELCPIWAKKLSLGLDRIDKNMIERDSKYCIVGEAWKFSGRYCGYYLALLIPFVGCLT
                     CIKYAHKFAKISKNKHKKENLTRIDFEPLIEYFLKHWNQKHREV"
BASE COUNT          738 a          265 c          285 g          733 t
ORIGIN      
        1 ccatacggag gaggtcaagt tctcgatata gatatagaaa aaatgattgt aaaatgattg
       61 taacaatggt agctcaccga ggttggagac cagatgataa gaccgtatac tatatcgcta
      121 catacgcaac accaaaaacg ccagctgata tgattggaga accttatgtt aaatcagatg
      181 aaaaattaat aggaatgcca gttgtagtag atttatttca atttactacc ggaatcaatg
      241 gttccggact tttagaaatg tatatattat aaatgatata caattctgaa tagcaaatta
      301 caaattccat tgtttttgtt tttggtgttt tagtattgtg acatttttaa ttcatgtatc
      361 tcaaatgaaa ttggtaaata gaattttcga cccaataaat cttttgaaaa tcattcatta
      421 tccagattat ctataaaggc ggtatattta aaaattggat agatgatttt acaaaaaatt
      481 aaaagagaag attgatgtct taaaattcta cttagtagtc aaataaagta ataaatttat
      541 tttttgttta attcatataa agacaatgta taatcatact aattttttta tagaaaatct
      601 gaaatcattg tttaacatat acaatgttat ggcattaatt caagactatg ataagttatg
      661 tttttacata cttacagttt taatgtcaac tatgatactt gcattagtat tgacattaat
      721 tttcgctccc tataatgatt attatattgg gactacaaat attttaagta taccattgtt
      781 agatattcta gaccgcataa tagtttaaag actattcatt caagcatcgt gtgctttatt
      841 gttaacaata ttttccttat tccatttttt catcaattct attcctccag agaggaggat
      901 aggagcaata aagcaataat tggacatttc ttacaaatat tctttacttg aagaaataat
      961 ttttctaaca aagaggctat aattttgcag acttgattct tattgttatt tttatttcta
     1021 caatttagtt ttataattca aatgcgtttg ttccaattat caggtgaaaa atattgttat
     1081 attatagacg aactcctgaa gaataccaat ttccatgggg tgcttcttga aatactataa
     1141 ttacctcttc tttctttatg tttaatattt tagctatatc ttctgtcatc gcctctgcga
     1201 gtctatcttt ttctctctgt gtcctaccac tatacattga tactgttact attggcattg
     1261 tgtaatgaga taaatacaaa agagaaataa ataagaatat cgttaactaa acttcactag
     1321 actaacagaa aaatttctct catattattt tggtaaaata atttattctt gtttgacctc
     1381 ataatcctac taataaaaaa gagaaaaaga gaagaaaaat tagatatcag tataataatc
     1441 attatagcat atgttttcaa ttatacatta tgatgataag gaatagttta tctaataata
     1501 ttttttctca tcgtaccagt aatgataaaa ataatgcagg cttgaaaaaa aataagcaat
     1561 tggagttctc atcaaaacac attgtaacca aatccattac atttaacgaa ttatgtccta
     1621 tatgggctaa aaaattatcc ttaggattgg ataggatcga caaaaacatg attgagcggg
     1681 attcaaagta ttgtattgta ggtgaagcgt ggaaattttc aggaagatat tgtggatatt
     1741 atttagccct attaattccg tttgttggat gcctgacctg tataaagtac gctcataaat
     1801 ttgcaaagat ttcgaagaat aaacataaaa aggaaaattt aacaagaatc gattttgagc
     1861 ctttaattga atattttctt aaacattgga atcaaaaaca tcgtgaagtt tagttaaaaa
     1921 tttatattgt cataaattac attagtcaat gtatactgag aaattattat aataactcac
     1981 ataaatagac atatattata atagtttatt tattaacata c
//
LOCUS       DATCMF010000008         1791 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_530284, whole genome shotgun sequence.
ACCESSION   DATCMF010000008 DATCMF010000000
VERSION     DATCMF010000008.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1791)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1791)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1791
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_530284"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            467..727
                     /locus_tag="VIL14_00090"
     CDS             467..727
                     /locus_tag="VIL14_00090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522136.1"
                     /translation="MSEFAFFRFMSSNMLNLEEQQHKDEIVSLTEQVLDTNGFECDSK
                     ISKIPEQQLREILEQVRKLRKKKKIEEVNERQLQEEQDISVQ"
     gene            735..977
                     /locus_tag="VIL14_00095"
     CDS             735..977
                     /locus_tag="VIL14_00095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522137.1"
                     /translation="MSRSSPSATPLWPFIYGLGIVAFIYFLTVRTGIVIFLIFLIVGV
                     TMIMSWVYYNARTKQNSDIKFIAKPVLAVTKKQVSD"
     gene            1057..1266
                     /locus_tag="VIL14_00100"
     CDS             1057..1266
                     /locus_tag="VIL14_00100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522138.1"
                     /translation="MQPADERSSSAVRVWMPMAAIAAAFTFVIAFVMRIPQEQTIAAS
                     AIAAAIVFSGLLFRSFGKDKTRYRK"
     gene            1497..>1791
                     /locus_tag="VIL14_00105"
     CDS             1497..>1791
                     /locus_tag="VIL14_00105"
                     /inference="COORDINATES: protein motif:HMM:NF015941.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosine-specific kinase"
                     /protein_id="HEY8522139.1"
                     /translation="MPADTQIILAQSNFIKTIEDVSECLVNCVPNIKYGVAFCEASGP
                     RLVRHNGNESNLELLATDYAVKLSAGHSVIILIKEAFPINVLPRLKDVPEIVNI"
BASE COUNT          611 a          301 c          321 g          558 t
ORIGIN      
        1 caggtgcaaa agaaaaaatt agattagaaa agctggtgtc atataggtaa gaaagacaag
       61 tggaaataat aggaattaaa acaatctgtg tgataattaa gtaaatttag attacttatc
      121 tttccattct tacgtctgat gtcattatat tggaacctac caagaagaat tctacaacga
      181 cttatagctg ccactattat tacctattat ttatttccta attgcccaaa ggagatcagc
      241 atatatattg ttcaaacagg ttcattaatg acagaaatta attttcacta gtaatcataa
      301 tgcagtatcg cctatttttt tgattttata tcgtaaagcc tctgcaacct cataatcaca
      361 tatcttgccg tcagaagatg aacctgtact tatcgattaa atatgtcatc ccacaacttt
      421 agcatgtata gaataaaata gtaagtttaa catattatta gaagagatga gtgaatttgc
      481 attctttcgt ttcatgagta gtaacatgct taatttggaa gagcagcaac acaaagatga
      541 aatagtttca cttaccgagc aagtattaga caccaatggc tttgaatgtg attcaaaaat
      601 atccaagata cctgaacaac aactaaggga aatacttgaa caagttagga agcttcgaaa
      661 gaaaaagaag attgaagaag ttaatgaaag acaactacaa gaagaacaag atatttctgt
      721 acaataatac aataatgtct aggagtagtc cttctgctac tccattatgg cccttcattt
      781 atggtcttgg tattgttgca ttcatatatt ttctcactgt ccgaaccgga atagtcattt
      841 ttcttatctt tttgatagta ggtgtaacca tgattatgtc ctgggtttat tacaacgcaa
      901 ggacaaagca gaacagcgac ataaaattca ttgctaaacc agtccttgca gtcacgaaaa
      961 agcaagtctc tgactagaac agaaatgcgt ttgttgtata ttcgttacag gagaaaccat
     1021 caaaagttta tctcttaata tatctagtag tcaactatgc aaccagctga cgaaagatcg
     1081 tcaagcgctg tcagagtgtg gatgcccatg gctgcaattg cagccgcatt tacatttgta
     1141 atagcattcg ttatgcgtat tccacaagaa cagaccattg cagcttcagc tattgctgcc
     1201 gctatagttt ttagtggtct tctattcaga tcatttggta aggacaagac caggtaccga
     1261 aagtaagttc tgaaaatatt caatcaaaaa gtactggtgg atgtggagtc aatcgtgatt
     1321 ccaagcagtt ctggtaaggt ggcagtgccc aaatggatct ctatggattg aaatattgta
     1381 ttttatatta cctctcgtta atctgtttat agctccacga caatttcctt aatgcatatt
     1441 gttaatattg atagtcactc tcatatctca tggagcttca atgtataaag atagaattgc
     1501 cagcggatac tcagattata ctagctcaaa gtaatttcat aaaaacaata gaagatgttt
     1561 cagaatgtct ggttaattgt gtacctaata taaaatatgg tgttgcattt tgtgaggctt
     1621 caggtccacg tttagtaaga cataatggta atgagagtaa tctggaacta cttgcaacag
     1681 attacgcggt caaactatct gcaggacaca gtgttattat tttgataaaa gaagcatttc
     1741 caataaacgt tcttccaagg ctaaaagatg tacctgaaat agttaacata t
//
LOCUS       DATCMF010000009         2233 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_331682, whole genome shotgun sequence.
ACCESSION   DATCMF010000009 DATCMF010000000
VERSION     DATCMF010000009.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2233)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2233)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2233
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_331682"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..301
                     /locus_tag="VIL14_00110"
     CDS             <1..301
                     /locus_tag="VIL14_00110"
                     /inference="COORDINATES: protein motif:HMM:NF019845.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HEY8522140.1"
                     /translation="VGDKVGVGCFVDSCRECDACHQRLEQYCKSVTYTYNGIEKDGKT
                     FTQGGYSNRIIVDENYILRMPENLSLERTAPLLCAGITLYSPLMKWKADQGKTLP"
     gene            268..813
                     /locus_tag="VIL14_00115"
     CDS             268..813
                     /locus_tag="VIL14_00115"
                     /inference="COORDINATES: protein motif:HMM:NF012335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HEY8522141.1"
                     /translation="MESRPGKNVAIIGLGGLGHIGIKIANARGAEVTVLSHSLKKQED
                     AKKMGADNFYSTSDPKTFEKLEGYFDIIINTVSTAFNLNQYLNLLRLDGTMVVVRAPE
                     KDAQISAHSLISARRNLAGSLIGGILETQQMLDFCSKHNIQCNIELITIQKVNEAYER
                     ILNSDVRYRFVIDLKSLTKNK"
     gene            889..2151
                     /locus_tag="VIL14_00120"
     CDS             889..2151
                     /locus_tag="VIL14_00120"
                     /inference="COORDINATES: protein motif:HMM:NF012296.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA];
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HEY8522142.1"
                     /translation="MNIYPPVEQRFSPFKFYSLMRKNNPVAFDEKNEQWGLYCYSDIE
                     KILKDPKKFSSKFEPFQVPQEYQENLNRPSLLNTDPPYHRKLRSIVDTLFVPIEISKL
                     GPRIENIANELIDNIIEKDNTTMDLITDFAYPLPATVIAELLGVPSEDQDTFRQWADN
                     IVSLEITSDSDIDSIRKADKTVNDMDIYFSNLIEKKKKMPANDLISHIIRAKVDGQSL
                     SEKEILSFCSLLLNAGHVTTVNLIGNLIFSLLENPQEFKRLQENKNSLIKSAIEETLR
                     YRSPVQLLFRIANADITLSEGSGERGGEKRVQNQKIQKGQGITLFLGSANHDESIFTD
                     PERFDITRKNLRHLGFGNGIHFCLGAPLARLEGQIALRIILERFENLQFNFENSDRQD
                     LYTKVSPLKSSFLLGLSQLPLRFQSKNR"
BASE COUNT          814 a          330 c          381 g          708 t
ORIGIN      
        1 agttggtgat aaagtaggtg taggttgctt tgtcgattct tgccgtgaat gtgatgcttg
       61 ccatcaacga cttgaacaat attgtaagag tgttacttat acttacaatg gaatagaaaa
      121 agatggcaaa acttttactc aaggaggata ttctaataga attatagtag acgaaaacta
      181 tatccttcga atgcctgaga atcttagtct cgaacgtaca gctcctcttc tctgtgcggg
      241 tataacactt tattcacctc ttatgaagtg gaaagcagac cagggaaaaa cgttgccata
      301 ataggtctgg gtggcttggg ccatataggt ataaaaattg caaatgcacg tggcgcggaa
      361 gtaactgtac taagtcattc acttaaaaaa caagaagatg ccaagaaaat gggagctgat
      421 aacttttatt ccacatctga tcccaaaact tttgagaaac ttgagggata ttttgacatt
      481 ataattaata cagtttcaac tgcatttaat ttgaaccaat atttgaatct gcttagactt
      541 gatggaacaa tggtagtagt tagagctcca gaaaaagatg cgcagatcag tgcacattct
      601 ttgataagtg ctcgtcgtaa ccttgctggt tctttaattg gtggaattct tgagactcaa
      661 caaatgcttg acttttgtag taaacacaat attcaatgta atattgagct tattacaatt
      721 caaaaagtca atgaggccta tgaacgtata ttgaatagcg atgtacgata tcgatttgta
      781 atagatttaa aatctctgac caaaaataaa taactttgat gacaattaac aaacatcctc
      841 atagttgtca aggataagga taaatttctt gttttgtacc tagaatacat gaatatatat
      901 cctccagtag aacaaagatt ttcacctttt aaattttatt cattaatgag aaaaaataat
      961 cctgttgcct ttgatgaaaa aaatgaacaa tggggattat attgttatag cgatattgaa
     1021 aaaatattaa aagaccctaa aaaattttca tctaaattcg aaccatttca agtaccccaa
     1081 gaatatcagg aaaatcttaa tcgtccaagc cttttaaata ccgatcctcc atatcacaga
     1141 aaactgcgta gtattgttga tacattattt gttcccatag aaatatccaa attaggacca
     1201 cgtattgaaa atattgcaaa tgagctaatc gataacataa ttgaaaaaga taatactaca
     1261 atggatttaa taacagattt tgcttatcca ttacctgcaa ctgtaattgc agaattattg
     1321 ggagtaccat ccgaagatca ggacactttt cgtcaatggg cagataatat agttagtctt
     1381 gaaattacta gcgatagtga tattgattcc attagaaagg cagacaaaac tgtaaatgat
     1441 atggatattt attttagtaa cttaatagag aaaaaaaaga aaatgccagc taatgatctt
     1501 attagtcata tcattagagc aaaagtagat ggacagtctt tatctgaaaa agaaatactt
     1561 agtttttgta gtctcctttt aaatgcagga catgttacta cagttaacct aataggaaac
     1621 ttgattttct cattacttga aaatcctcaa gaatttaaac gattacaaga aaataaaaat
     1681 tccttaatta aatctgccat agaagagact ttacgttacc gatcaccagt acaattattg
     1741 tttcgtattg caaatgctga tataactttg tctgaaggaa gtggagaaag aggaggggaa
     1801 aaaagagtac agaatcaaaa aatacagaaa ggtcaaggaa ttacattatt tttgggttct
     1861 gcaaatcacg atgaatcaat atttacagat cctgaacgat ttgatattac tcgtaagaat
     1921 ttacgtcatt tgggttttgg aaatggaatc catttttgtt taggagctcc tttagctaga
     1981 cttgaaggac aaatagcatt aagaataatt cttgaaaggt ttgagaatct tcaattcaat
     2041 tttgagaata gtgatagaca agatctatat acaaaagtta gtccactcaa aagttctttt
     2101 ttacttggat tatcacaatt gcctttacgt ttccaatcta aaaatagata ataaaacttg
     2161 aacatataca tttaatttat taactggaga attaatataa tttttaaacg tttatgttta
     2221 taaacttaga atg
//
LOCUS       DATCMF010000010         5805 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_1208, whole genome shotgun sequence.
ACCESSION   DATCMF010000010 DATCMF010000000
VERSION     DATCMF010000010.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5805)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5805)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5805
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1208"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            211..555
                     /locus_tag="VIL14_00125"
     CDS             211..555
                     /locus_tag="VIL14_00125"
                     /inference="COORDINATES: protein motif:HMM:NF012365.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522143.1"
                     /translation="MIRYNGSKLSLIAIIAGLVLAGFTLSSTQAFAAEPSTSANEGLT
                     KPLLAIAAAIAIAGGLIGTGNAQQGIGAAGMGIIAEKPEKFGQVLFFFVIPETLWIIG
                     FVLGIILLLGIL"
     gene            579..1142
                     /locus_tag="VIL14_00130"
     CDS             579..1142
                     /locus_tag="VIL14_00130"
                     /inference="COORDINATES: protein motif:HMM:NF014093.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="V-type ATP synthase subunit E"
                     /protein_id="HEY8522144.1"
                     /translation="MNLDTFIQEIEERKTKKINLLDITLAEKIARIQHKKESTLKEMQ
                     QHYSDEAKAKSQKEAARIVEAARLKAKKILFDAINANMDSTINTIREELKTYSRKPDY
                     KMTIEKMIQYAKMKLSSQDIVIHCRNDDTMILKEMNITTGSSIQTIGGILAENKTGTM
                     ELDLTFEELLRTHEDKIQNFLLEKLMK"
     gene            1144..2220
                     /locus_tag="VIL14_00135"
     CDS             1144..2220
                     /locus_tag="VIL14_00135"
                     /inference="COORDINATES: protein motif:HMM:NF014094.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046961 - proton-transporting ATPase
                     activity, rotational mechanism [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="V-type ATPase subunit"
                     /protein_id="HEY8522145.1"
                     /translation="MATSSYSSSFGRLKSLSINFISPILLQNLVHAKDVAEMTRILEP
                     TWYGPEIERAASLYSPPELLEVALNRHIVEINKIALESTPFSGREAIRAYLLKWDIHN
                     IELILSSKIIGRAITETEPFLVSSRNFPAGISAGNISHDEMKIILTQAGVDGVVNHLV
                     KYRYGPILMQHLDTYQKTGDLGPMMADLIAYYYTTLIESLRFFQGDEGVIRDLFRVQI
                     DKRNILNLLKGKDSDLDRELINKHLIKGGNIARDELFDILGSKSNEEFIGKVQKHYNL
                     ADLLKETYLKTHSLIDFEVAFDKFISKSYLKRLKNIPLSLGSIFHFIITAEYEWDNIK
                     RIAYGKRYDLSIERITSMLVLETD"
     gene            2225..2572
                     /locus_tag="VIL14_00140"
     CDS             2225..2572
                     /locus_tag="VIL14_00140"
                     /inference="COORDINATES: protein motif:HMM:NF014092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046961 - proton-transporting ATPase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0034220 - monoatomic ion transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="V-type ATP synthase subunit F"
                     /protein_id="HEY8522146.1"
                     /translation="MPSKEQQHSESKGRIAVIGERELVIGYRLLGVDDTFIVNGGDES
                     FKTMENLFFSHKYSMIIASQFIRDYLPSIFRKKVEASIEPLVLFMPLLKGDIQEESIS
                     SLARRVLGINIKY"
     gene            2602..4368
                     /locus_tag="VIL14_00145"
     CDS             2602..4368
                     /locus_tag="VIL14_00145"
                     /inference="COORDINATES: protein motif:HMM:NF003220.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="V-type ATP synthase subunit A"
                     /protein_id="HEY8522147.1"
                     /translation="MSTAIVSRISGPVVVATDIEQAQMYDVVRIGELGLLGEIIRLEG
                     NKATIQVYEDTTGLRPGEKIVNTRRPLSIQLGPGLLKSIYDGIQRPLDILRQESGDFI
                     SRGKIIPALDQHKKWEFVPIKKKGEDVSQGEIIGEVQETPLIRHKIVTPYGIHGQLSE
                     ITEGNFTVSENVAQIKTNSAIVDVGLSNWWMVRKPRPVLSKLPPESPLLTGQRVLDTF
                     FPIAKGGTAAIPGPFGSGKTVTQQQLAKWADSNIIVYVGCGERGNEMTEILTTFPELE
                     DPKSKRPLMERTILVANTSNMPVAAREASIYTGITMGEYYRDMGYDVALMADSTSRWA
                     EALREISGRLEEMPGEEGYPAYLGSRLAEFYERGGKAVVISPEERVGSLTLVGAVSPP
                     GGDFSEPVSQNTLRVTRVFWALDANLASRRHFPSINWLTSYSLYADDMNDWYKNNISS
                     DWIKRRQEALEILQRESELQEIVQLIGYDALPEPEKGILDTARSIREDFLQQSAYDEV
                     DTYSSIKKQYMMLSIILEFGKLEAEAIKKGILSSKVGSLEVRKQISMIKWTKEGEIDE
                     LINQIKINMKQQFDKLLMEIAI"
     gene            4370..5770
                     /locus_tag="VIL14_00150"
     CDS             4370..5770
                     /locus_tag="VIL14_00150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020266852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="V-type ATP synthase subunit B"
                     /protein_id="HEY8522148.1"
                     /translation="MSNVAFKTLSKIAGPLIFVEGVNDAAYGEIVEIKLANGDRRQGQ
                     VLDTRKGLAIIQVFGPTYGLGTSGTSTKFSGETAMLSVSDEMLGRTFDGLGKPRDTGP
                     KIISKEKYDLVGAGINPYSREEPSEFIQTGMSNIDGMNTLVRGQKLPIFSGAGLPHNL
                     LATQIARQAKVLGTSENFSVVFAAMGITSEEANFFIKQFEESGALGRSVLFLNLSSDP
                     SMERILTPRLALTTAEFLAYEREMHVLVILTDMTNYCESLREISAAREEVPGRRGYPG
                     YMYTDLASIYERAGKIKGRKGSVTQIPILAMPADDITHPIPDLTGYITEGQIVLSREL
                     NRLNIQPPVDVLTSLSRLMNQGIGNGRTREDHRNLADQLYATYAQGKDARALSAIVGE
                     EALSETDRKFLKIANNFERKFVNQGIDENRSIEHTLDIGWELLSNLPESEMKRIKSEF
                     IIKYRKRVDKETERGA"
BASE COUNT         2030 a          916 c         1183 g         1676 t
ORIGIN      
        1 actttttaga tacatactat aatcattaat tattttaaaa accttcaaag ttaattcttt
       61 attagatttt acagactaca ccttagacgc caaatacatt tgaattattt aaaagatcac
      121 actcacttta gcgtctcatt aaaaattaaa agggtttgac tatcaagaaa actcttataa
      181 atgtctattt ataataaacc ttagctaata atgatacgat ataatggttc aaaattgtct
      241 cttattgcaa taattgcagg attagtcctt gctggattta cattatcctc tactcaagca
      301 tttgctgctg aaccctcaac ctctgcaaat gagggactaa caaagccatt gttggcaata
      361 gctgcagcaa tcgcaatagc aggaggtcta ataggtactg gcaatgcaca gcaaggtatt
      421 ggtgctgcag gaatgggaat aatagcagag aaacctgaaa aatttggaca ggtacttttc
      481 ttctttgtca taccggaaac tctttggatc atcggttttg tactaggcat tatcctatta
      541 cttggtatat tatagtgtag taggagtatg aattaattat gaacttggat acattcatcc
      601 aagagatcga ggaaagaaaa acaaagaaaa ttaacctgct tgatattaca ttagccgaaa
      661 aaatagcacg gatccaacat aaaaaggaaa gtactctcaa agaaatgcaa caacattatt
      721 cagacgaggc taaagcaaaa tcacaaaagg aagctgctag aatagttgag gcagcgagat
      781 taaaggcaaa aaaaatcctc tttgacgcaa ttaatgcaaa catggattct acaattaata
      841 caataagaga ggaattaaaa acctatagta gaaaaccaga ttataaaatg accatagaaa
      901 aaatgattca atatgctaag atgaaattaa gtagtcagga tatagtaata cactgtcgta
      961 atgatgacac tatgatttta aaggaaatga acatcacaac cggttcatca attcaaacta
     1021 ttggaggaat tttagccgaa aacaagacgg ggacaatgga acttgatttg acttttgaag
     1081 agttgttaag aacccatgaa gataaaattc agaattttct cctagagaaa ttgatgaagt
     1141 aagatggcta cttcatccta ttcatcttcc tttggccgat taaaatccct ttccataaat
     1201 tttatttctc caattcttct tcaaaattta gtgcatgcta aagatgttgc agaaatgaca
     1261 cgtatccttg agcctacgtg gtatggtcca gaaatcgaaa gagctgcatc tctttattca
     1321 cctcctgagc ttttggaagt tgctctcaac agacatattg ttgaaatcaa caaaattgct
     1381 cttgaatcta ctccctttag cggtagagag gcaatcagag cttatttatt aaaatgggat
     1441 attcataata ttgaattaat tctatcatca aagataatag gtcgtgctat cactgaaacg
     1501 gaacctttcc tagtttcaag ccgaaatttt ccagctggga tttccgcagg aaacatatcg
     1561 catgatgaaa tgaaaattat tttaacacag gctggagtag acggtgtggt aaatcatcta
     1621 gtcaagtatc gatatggacc catattgatg caacatcttg atacttatca aaaaacaggc
     1681 gatcttggac ctatgatggc cgatcttata gcatattatt acactacact aattgagtca
     1741 ttaaggtttt ttcagggtga tgaaggagtc attagggatt tattcagagt tcagatagac
     1801 aaaaggaata ttttaaatct cttaaaggga aaagattctg atttagatcg ggaattaatt
     1861 aataaacacc ttataaaagg aggaaatatt gctagagacg agttatttga tatattggga
     1921 tcaaagagta atgaagagtt tattggaaaa gtacaaaaac attacaattt agctgacctc
     1981 cttaaagaaa cttatcttaa aacccatagt ctgattgatt ttgaagtagc ttttgataaa
     2041 ttcataagta aatcatattt aaaaagatta aaaaatattc cactttctct aggatccatc
     2101 tttcatttca ttattactgc agaatatgaa tgggataaca taaagagaat tgcttatgga
     2161 aagcggtatg atctttcaat agagcgtata acatcgatgt tggttttgga gacggactag
     2221 tatattgcct tctaaagaac aacaacattc tgaatcaaag ggtagaatag ctgttatagg
     2281 agagcgtgaa cttgtaattg gttatcgact tttaggagta gatgatacgt tcatagttaa
     2341 tggaggagat gaatccttta aaacaatgga aaatcttttc ttttcacata aatattcgat
     2401 gattattgca agccaattca ttcgggatta tctcccatca atatttagga aaaaagttga
     2461 agcatcaata gaaccactag ttttgtttat gcctttattg aagggagata ttcaggaaga
     2521 atcgatatcc tccttagcta gacgtgtact gggaataaat attaaatatt aaaaaaggat
     2581 ggttgaggag taagatagaa tatgtcaaca gccattgttt ctcgtatatc tggtcccgtt
     2641 gttgtagcaa ctgatattga acaagctcaa atgtatgatg tggtacgtat cggagaatta
     2701 ggtttgctag gagaaattat tcgtctggag ggtaacaaag ctactatcca ggtttatgag
     2761 gacaccacag ggcttagacc tggggagaag atagttaata ccagaaggcc actttcaata
     2821 caactgggtc ctggattact gaaatccatt tatgatggta tacagcgtcc attagatatc
     2881 ttaagacaag agagtggtga ctttattagt agaggaaaaa ttatccctgc attagatcag
     2941 cacaagaaat gggaatttgt tcccattaag aaaaaggggg aagatgtttc acaaggtgaa
     3001 ataataggcg aagtacaaga aactcctttg attagacaca aaatagtgac tccatatggt
     3061 attcatggtc aattgtctga aatcacagaa ggaaatttta cagtaagtga aaatgttgca
     3121 caaataaaaa caaatagtgc tattgttgat gttgggttat caaactggtg gatggtaaga
     3181 aaacctcgcc ccgtactgag taaacttcca cctgaatctc cgttgctaac agggcaacgt
     3241 gttcttgata ctttttttcc tattgcaaaa ggtggtactg cagctattcc cggcccattt
     3301 ggaagtggta agacagtaac acaacaacag ctagcaaagt gggcagatag taacataatc
     3361 gtatacgttg gatgtggaga aagaggaaat gaaatgaccg aaattcttac tacttttcct
     3421 gaattagaag atcccaaatc gaaacgccca cttatggaac gaacaatact tgttgccaat
     3481 acttcgaata tgccagtagc agcacgtgaa gcaagtatct atacaggtat tactatgggt
     3541 gaatattatc gagatatggg atatgatgta gcattaatgg cagatagtac atctagatgg
     3601 gcagaagcgt taagagaaat ttcggggaga ttagaagaaa tgccaggaga agaaggatat
     3661 ccagcttatc tcggcagcag gttggccgaa ttttatgaaa gaggggggaa agcagttgta
     3721 atttctcctg aagaaagagt tggttcctta actttagttg gcgctgtatc tcctccagga
     3781 ggggattttt ctgaaccggt ttcgcaaaat acccttaggg taacacgggt cttctgggct
     3841 cttgacgcaa atttggcatc acgaagacat tttccatcta ttaattggtt aacgagttat
     3901 tcactctatg cagatgatat gaatgattgg tacaagaata atatatcttc tgattggatt
     3961 aaaagaaggc aagaagcatt agaaatctta caacgagagt cagaattgca agagattgtt
     4021 caattaatag gttatgatgc attaccagaa ccagaaaagg ggattttaga taccgctcgt
     4081 tcgattcgag aggatttttt gcaacaaagt gcttatgatg aggtggatac ctactcttct
     4141 attaaaaaac agtatatgat gctttcaatt atcttagagt ttggaaaact tgaagctgaa
     4201 gcaataaaaa aaggcatttt atcttcaaaa gtaggatcat tggaagtaag aaaacagatt
     4261 tcgatgataa agtggactaa agaaggagag atagacgaat tgatcaatca gatcaagata
     4321 aatatgaaac aacaatttga caaattgcta atggagatag cgatttaaaa tgtcgaatgt
     4381 tgcatttaaa acattatcaa aaatagctgg ccccctgata tttgtagaag gagttaatga
     4441 tgccgcatat ggggaaattg ttgagatcaa gctggctaat ggagaccgtc gtcaaggtca
     4501 agtactagat actcgaaagg gcttagccat tattcaagtc tttggtccta catatggtct
     4561 aggcacatca ggaacttcaa caaaattttc tggtgaaact gccatgcttt ctgtatctga
     4621 tgagatgctt ggaaggactt ttgatggatt aggaaagcct agagataccg gaccaaaaat
     4681 tatttcaaaa gaaaagtacg atttagtagg tgctggaatt aatccttatt ctagagaaga
     4741 accgtctgaa tttatccaga caggcatgtc taatatagat ggaatgaata ctctagtaag
     4801 aggccaaaaa ctcccaatat tttctggggc gggcttaccc cataatttac ttgcaactca
     4861 gatagctaga caagcaaaag ttcttggaac ttctgaaaat ttttctgttg tgtttgctgc
     4921 aatgggtatt accagtgaag aagcaaattt ttttataaaa caatttgaag aaagtggcgc
     4981 ccttggtaga agtgttcttt ttctaaattt atcatccgat ccatctatgg aacgtatact
     5041 tacccctaga ctagcattaa caacagctga atttctcgct tatgaacgag aaatgcatgt
     5101 tttagtaata ttgactgaca tgaccaatta ttgtgaatcc ttaagagaaa tttcagcagc
     5161 gcgtgaggaa gtaccaggaa gacgtggata cccaggctac atgtatacag atttagcatc
     5221 aatttatgag agagcaggta agataaaagg aagaaaaggg tctgttacac aaattcctat
     5281 acttgctatg ccggcagatg atattacgca tcctattcca gatcttacag gatatattac
     5341 agaaggtcag atcgtgctga gcagggaatt aaacagactg aatatccaac cgcctgttga
     5401 tgtacttaca agtctctctc gtctaatgaa tcaaggtatt ggaaatggtc gaactagaga
     5461 ggatcataga aacctcgctg accagctcta tgctacttat gcccagggaa aagatgcgag
     5521 agcattatcg gcaattgtag gagaggaggc gttaagtgag acagatagaa aatttcttaa
     5581 aatcgccaat aattttgaac gaaaattcgt taatcaaggg atagatgaaa atagatcaat
     5641 tgagcatact ctagatatag ggtgggaact gttaagcaac ctgcctgaat cagaaatgaa
     5701 gcgtataaag tctgaattta taataaagta tagaaagcga gttgataaag aaacagaacg
     5761 tggagcgtga atagataaaa ggtatgacat tagcaactga tattc
//
LOCUS       DATCMF010000011         1527 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_596924, whole genome shotgun sequence.
ACCESSION   DATCMF010000011 DATCMF010000000
VERSION     DATCMF010000011.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1527)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1527)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1527
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_596924"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            182..1024
                     /locus_tag="VIL14_00155"
     CDS             182..1024
                     /locus_tag="VIL14_00155"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013704.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009307 - DNA restriction-modification
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HEY8522149.1"
                     /translation="MIHVNKIYNTDCMEFMNQLKNENFIKIDAIVTSPPYNINKPYSR
                     YNDRRDKNEYLLWLQKIAHKSLQVLKEDGSFFLNVGGRPADYMLPFEICSKFIEAGYK
                     LQNTIHWIKSISIEVEDIGKNNFIKTDSSIGHFKPIISQRFLSDLHEYIFHFTKKGDI
                     AIDKLAVGVTYQDKSNIKRWKSAKTDKRDRGNIWFIPYNTIQEKRPHPATFPEKLPYL
                     CIKLHGIRKNTVIYDPFIGIGTTALACINLNVEFLGTEIDNKYIEIANENIKLRYIKK
                     NKKF"
     gene            complement(1021..>1527)
                     /locus_tag="VIL14_00160"
     CDS             complement(1021..>1527)
                     /locus_tag="VIL14_00160"
                     /inference="COORDINATES: protein motif:HMM:NF039585.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5915 domain-containing protein"
                     /protein_id="HEY8522150.1"
                     /translation="KVISEFEKIDKVEVLYTLKTEKKFRLCYDKTSSSSSSSSSSSFI
                     DLYEKDLEISFSVKEGYVYAEKENLMIFMSTNRDQNLITQGLVRDLARNLQQLRKEKS
                     YNPTEILSTAYIADLEKDEVSSLSLHTTDLTYLVRVQSIVLSEEKKEDIEYKIIEIDG
                     REISISIN"
BASE COUNT          596 a          211 c          223 g          497 t
ORIGIN      
        1 ttgctaataa aatttaataa atgaagaata aagggaaaaa tcatgtttat gagttttttg
       61 ttataaataa attaaaagta acattatatt ctagaccttc actatcataa attctaccca
      121 aactctaatc caaaaatttt ataagttaat cagttgcaat ccacgaacga acgaggatca
      181 aatgattcat gtaaataaaa tttataatac tgattgcatg gaatttatga accaattaaa
      241 aaatgaaaat tttataaaaa ttgacgcgat agtaacatca cctccttata atattaacaa
      301 gccctattct agatataatg atagaagaga taaaaatgaa tatcttttat ggttacaaaa
      361 aatcgctcat aaaagcttac aggttttaaa agaagatgga tcatttttcc tcaatgtggg
      421 tggaagacct gcagactata tgcttccttt tgaaatttgt agtaaattta tcgaagctgg
      481 atataaattg caaaatacaa tccattggat aaaatcaata tcgatcgaag tagaggatat
      541 aggaaaaaat aactttataa aaactgattc atctattggg cattttaaac ctataattag
      601 tcagagattt ctaagtgatc ttcatgaata catatttcac tttaccaaaa aaggagatat
      661 agctattgac aaattggctg taggggtaac ataccaggac aaatcaaata taaaaagatg
      721 gaaatctgcg aaaacagata agagagatag aggaaatatc tggtttattc cttataatac
      781 aattcaagaa aaaagaccgc atcctgcaac atttcctgaa aaactaccct acttgtgcat
      841 taaattacat ggtataagaa aaaatacagt tatttatgat ccatttattg gaataggtac
      901 gacggctttg gcatgtatta acttaaacgt tgaattttta ggcactgaaa tagataacaa
      961 atatatagaa attgccaatg aaaatatcaa actgaggtat ataaaaaaaa ataaaaaatt
     1021 ctagtttatt gatatactta tttctcttcc atcaatttca atgatcttat attcaatatc
     1081 ttccttcttt tcttcagata aaactataga ttgaactcta actaaataag ttaaatcggt
     1141 tgtatgtaaa gataaagaag atacctcatc tttttctagg tcagcaatat atgcagttga
     1201 tagaatttca gtcgggttat atgatttttc tttacgtaat tgttgcaagt tcctagccaa
     1261 atcacggact agaccctgtg taattaagtt ttgatcacga tttgtagaca taaatatcat
     1321 taaattttct ttttcggcat aaacgtaacc ttccttaact gaaaatgaaa tttccaaatc
     1381 tttctcatat agatcaataa aagaagaaga agaagaggag gaggaggagg aggaagtctt
     1441 atcataacat aggcgaaatt ttttttctgt tttaagagta taaagaacct ctactttgtc
     1501 aattttttca aattctgata taacctt
//
LOCUS       DATCMF010000012         1553 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_199574, whole genome shotgun sequence.
ACCESSION   DATCMF010000012 DATCMF010000000
VERSION     DATCMF010000012.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1553)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1553)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1553
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_199574"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..290)
                     /locus_tag="VIL14_00165"
     CDS             complement(<1..290)
                     /locus_tag="VIL14_00165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522151.1"
                     /translation="MEPTEKIYYMRAILGIVAGIIIAFSISPGTNQGTILGIIIIMSL
                     LFYIISYWISKKILPNVPKTEKRKFVTNGIFPFIFLLVMFMIVSYTGLHQNLA"
     gene            391..>1553
                     /locus_tag="VIL14_00170"
     CDS             391..>1553
                     /locus_tag="VIL14_00170"
                     /inference="COORDINATES: protein motif:HMM:NF017633.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NFACT family protein"
                     /protein_id="HEY8522152.1"
                     /translation="MELSSIELRYIVNYVNLRLTTGGYYLSQINAITKDSLALKFHHS
                     TEQDILLVVSTKGMWVTKILFKQVEENDLVRNARKELERSRIISIQQLDSERIAIFKF
                     EHYDNKIRYLICEFFGQGNIIICDETMKIISLLNPLEVRHRTLHIGLKYAPPPSYGSD
                     IFTISLEEFESKFQNEMKNLEITKWLGRILSLPKKFVEEVLFRACISNNKKIKEITND
                     ELGRIFTNTKELVNEVICEEKHSPIVILDTDDVPIDASHVKLKKMTDSKMKSVLTFMD
                     ALDEVLCNDIITIGKKIHTIELDKKILLLEHDLHEQDKAKQKVLSKSNSIRNLASDLM
                     NISISDPGELNGLLNKHSSNLIIEKGKKYLDIVEELIPLDDNLRKVSSLLYERA"
BASE COUNT          596 a          216 c          236 g          505 t
ORIGIN      
        1 gcgagatttt ggtgtaatcc tgtatatgat actatcataa acattactaa caagaaaata
       61 aaaggaaaaa taccgttagt aacgaatttt cttttctcag ttttaggtac attggggaga
      121 atcttttttg aaatccaata agaaataata tagaaaagta gactcattat aataataata
      181 cctagtatag tcccttgatt cgtgccggga gatatactaa atgctataat aatccctgct
      241 acaatgccca atattgctcg catgtaataa attttctcag taggttccaa atattaagtt
      301 cctttaataa tagggagttt aatttcttcc ggtcggaagt ttcctgaatt tgtagttaat
      361 atttagctac tactctcatt tacattagca ttggagttat catcaataga attaagatat
      421 attgttaatt atgtaaattt acgacttact actggtggct attacttaag ccaaatcaat
      481 gcaattacaa aagattctct ggcattaaaa tttcatcatt caactgaaca agatattctt
      541 ttggtagttt cgactaaagg aatgtgggtt acgaaaatat tattcaaaca agtagaagaa
      601 aacgatttag ttagaaatgc aagaaaggaa cttgaaagat ctcgcataat atctattcaa
      661 caattggatt cagaaagaat agctattttc aaatttgaac attatgataa taaaattcgt
      721 tatttaatat gtgagttctt tggtcaggga aatataataa tttgcgatga aacaatgaaa
      781 ataatatcac ttcttaaccc tttagaagta aggcatagaa ctttgcacat aggattaaaa
      841 tatgctcctc ctccatcata tggctctgat atctttacta tatccctcga agaatttgaa
      901 tcaaaatttc agaatgaaat gaaaaatcta gaaattacaa aatggttagg acgaattctc
      961 tcattgccaa aaaaatttgt tgaagaagta cttttccgcg cctgcataag taataacaag
     1021 aaaataaaag agatcacaaa cgatgaactt ggcagaatat tcaccaatac aaaagaactg
     1081 gtaaatgaag taatttgtga ggaaaaacat tctccaatag ttattttaga tactgacgat
     1141 gtccctatag atgcgtctca tgttaaatta aaaaagatga ctgattcaaa aatgaaatca
     1201 gtacttacct ttatggatgc attagatgag gttttatgta atgatattat tactataggt
     1261 aaaaaaattc atacaataga acttgataaa aaaattttat tgcttgagca tgaccttcat
     1321 gaacaagata aggctaaaca aaaagtatta tctaaatcta attctataag aaaccttgct
     1381 tctgatttga tgaatatatc tatttctgac cctggtgaat taaatggttt actaaataaa
     1441 cattcttcta atctaataat agagaaagga aaaaaatatt tagatatagt agaagaacta
     1501 attccattag atgacaattt aagaaaagtc tcttcacttt tgtatgaaag agc
//
LOCUS       DATCMF010000013         2327 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_332063, whole genome shotgun sequence.
ACCESSION   DATCMF010000013 DATCMF010000000
VERSION     DATCMF010000013.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2327)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2327)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2327
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_332063"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            157..384
                     /locus_tag="VIL14_00175"
     CDS             157..384
                     /locus_tag="VIL14_00175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522153.1"
                     /translation="MGWVSKITGYFFGIIIVLFGLLWIISAIPLSVILDGLIGLNIVI
                     LGFCILYSVHKAGIHNKHQQELQLDGSINNQ"
     gene            complement(1162..1629)
                     /locus_tag="VIL14_00180"
     CDS             complement(1162..1629)
                     /locus_tag="VIL14_00180"
                     /EC_number="2.1.1.63"
                     /inference="COORDINATES: protein motif:HMM:NF013222.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003908 -
                     methylated-DNA-[protein]-cysteine S-methyltransferase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MGMT family protein"
                     /protein_id="HEY8522154.1"
                     /translation="MSKKPKTHLNYLNYNSKKLNSIEDAEKEFLPSSSYISSKRAKIT
                     TTKRVLKNEDVYELLLKIPAGKVTTYGDLAKALGNPSASRIIGRILGQNPNPIKVPCH
                     RVVMSDGKLGGYAYGTAKKRGLLEKEGLYFTNGIVSDFTKNRISLSSNGKIRD"
BASE COUNT          776 a          336 c          346 g          869 t
ORIGIN      
        1 actaacaaga attgttgtta aacattgcag atttaccttc ctgaaaaagt agataaatta
       61 ggtattaatt aataaataac tagtagaatt taatattaaa attaatttct aaattcaact
      121 aaaaccctaa aatccaaaga ttagaaattt actattatgg gatgggtaag taaaattaca
      181 ggatatttct ttggaataat aatagtttta tttggtcttc tatggatcat ctcagcaata
      241 ccactatctg taatattaga tggattgatc ggattgaata tagtgatttt aggattttgt
      301 attctttatt cagttcataa agcaggcata cacaataaac atcaacaaga acttcaacta
      361 gatgggtcca taaacaatca ataatttatt caatagtatc ttaacatcat tgttagtata
      421 ctaaagattt ctgattagct tgagcggctt gcacttgtaa tgtccaatat ggtataattg
      481 acatattata ctaatattca taaatgtcat gaagtttcta cttaatttac ttacattttc
      541 ttcatgaggt gagaagcatt aaatccagat taatctaata gttttaatgt catagtgatt
      601 gtataaaaag taataacggt tgtgactgtt atgagataaa atgatagtaa ttgacggtta
      661 atcgtctaaa gggatagtga ttgtagtgac tgtctggatt ttttcacgtt tttcctaaac
      721 atttttatta gattcaaaag taaaacatat tatcaaaacg cgtcttacac tattgacaaa
      781 aaattttctt tgaaagtacg tggtgatata acaaaccaag gtagtaattt tggctattgt
      841 gttactttta caaaaaggac tacattttat acgtatgtat caattattaa tcaaattaac
      901 caatactaat ttttataata tggactttgg ctgtttattt tcatggcaaa gcctttgacg
      961 ttcatcaaaa ttgtccggaa actgtctttc tatagatcgg agttatcata ttcgttgata
     1021 agctctttac aatctcgaac tgacaagaat cgaggcacca acgcatattc cttattattt
     1081 atttcgtttg ttactgtctc ccaatcaatg tcagaaattt tcaagtataa ctttagttat
     1141 atttgttgta ttcaatgggt tttaatctct gattttccca tttgaagaaa gagagatcct
     1201 attcttcgta aaatcactaa cgattccatt tgtaaagtat aagccttctt tttcaagtaa
     1261 ccctctcttt ttggcagtcc catacgcgta tccgcctaat ttgccatcgg acatgactac
     1321 cctgtgacaa ggcaccttaa ttggatttgg attctgaccg agtattctac ctattatcct
     1381 tgatgctgaa ggattaccaa gtgctttagc aagatccccg taagtggtaa cctttcctgc
     1441 aggtattttt agtagcagtt catagacatc ttcgtttttt agcactctct tagtagtagt
     1501 aatctttgcc cttttagatg atatataaga cgatgagggc aggaattctt tttctgcatc
     1561 ttcaattgaa ttcagttttt tactattata attcaaataa ttcaaatgag ttttaggctt
     1621 tttactcata tgtataataa tattatattt atatataaat ttaatcttaa tttgctatct
     1681 tgatatcaat aattataatt aaatcattgt gaagataatg tattcatggt acattctatc
     1741 ataattcgta atgatcctta ttttcttagc ttaaacgtta ggagggcttt gtattatttc
     1801 tttatgtatt tgttccaact ttttagccat atcattttta cacaatttat gctgcctatg
     1861 tataatctct tcaataatat gatgaagaat aacagacaag aaaaagaagc taaatatgag
     1921 attcgtgttg ttctgagcat tagttgaatt ttgagcctct gcaaaataaa ttggttgtaa
     1981 actcaaaaaa gtagtaaata gtaaaaacaa gatagaataa gacagaataa tcgtatttat
     2041 tgttgataat gggtaagaca tttaatcata ttaaatcata taatatttat aaattaagat
     2101 gattgtattt ttctggctat caacctgaga gaagtaagag ataaaggaaa aataaactta
     2161 gatatgggtc ataactacgc tttaccaaaa tcccatgtag aaaagaactt tggactgatt
     2221 tcaataatta cattttctct cttctttgaa ttctctgtta tcatttttgc taatgggtga
     2281 tcaagagtac ctaggtattt catacttatt ttatctcctt ctggaac
//
LOCUS       DATCMF010000014         2101 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_1365, whole genome shotgun sequence.
ACCESSION   DATCMF010000014 DATCMF010000000
VERSION     DATCMF010000014.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2101)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2101)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2101
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1365"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2101)
                     /locus_tag="VIL14_00185"
     CDS             complement(<1..>2101)
                     /locus_tag="VIL14_00185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDC48 family AAA ATPase"
                     /protein_id="HEY8522155.1"
                     /translation="KMNNYPNSGNNKFTLKVAETFSKFVGRGIALIDPRIIEEYDLRT
                     GDVLELTHESTSKKSYVLLWSSNPNDYGKGLIRIDGYTRENISAGIDDQVKVQKVNVE
                     NAEEIKMSPIEDLNIVGLEGYLSEKLDGRVVSKDDVILFNIMGKRIGFIVVSTKPQNR
                     ALLINSDTKFKIGSKSGISVQDKKIDRITYEDIGGIKNEVQKVREMIELPLRHPELFD
                     KIGIEAPKGVLLHGPPGTGKTLLAKAVANETNANFYSIGGPEIMSKFYGESEEKLRDI
                     FTQAQEKAPSIIFIDEIDSIAPKRDEVSGDVEKRIVSQLLSLMDGLKARGKVVVIAAT
                     NRPNALDPALRRPGRFDREIEIGIPDVDGRYDILQIHTRGMPLEQDIDLKSYAKVTHG
                     FVGADLEMVAKEAAMRSLRRIIPEINLKESKIPIDILNKIKITNQDFDDALKEVHPSA
                     MREVLVQKPNIEWKDIGGLYNIKEELKEAIEWPLKHADLFSKAAIKPPKGILLYGPPG
                     TGKTLLAKAVASTSESNFISIKGPELLSKWVGESEKGIREIFRKARQAAPCVIFFDEI
                     DAIAPRRSGYDGGGAGGDSHVTERLVSQMLTEIDGLEDLKGVVIIGATNRPDILDEAL
                     LRPGRFDRLLEIPIPDNNTRKQILQIHLKTKPLASDVDIDKLVSLTDSFTGAEIEALV
                     NAAAIAAVKEHVIAKEQK"
BASE COUNT          566 a          435 c          296 g          804 t
ORIGIN      
        1 ctttttgttc tttcgctata acatgttctt ttactgctgc aatagctgca gcattaacta
       61 aagcttctat ctctgcacca gtgaagctat cggttaaact tactagttta tcaatatcta
      121 catcagatgc taatggtttc gtttttagat gtatctgcaa aatttgtttt cgagtattat
      181 tatccggtat tggtatttct aaaaggcgat caaatcttcc cggtctgagc aaagcttcgt
      241 caagaatatc cggcctatta gttgcaccga taatcactac tcctttgaga tcctctaatc
      301 catctatctc agttaacatt tggcttacta atctttcagt tacatgtgaa tctcctcctg
      361 ctcctcctcc atcatatcct gatcttcttg gagcaatagc gtctatttca tcaaaaaata
      421 tcacacacgg tgctgcctgt ctagcttttc taaagatttc acggatacct ttttcagatt
      481 ctccaaccca ttttgataag agctctggac cttttatact aataaaattt gattcagagg
      541 ttgatgcaac ggctttagct aataatgttt ttccagttcc gggaggtcca tataataata
      601 ttcccttggg aggttttatt gctgctttgc taaaaagatc cgcatgttta agtggccatt
      661 ctattgcttc ctttaattct tccttaatat tatatagacc gccaatatct ttccattcta
      721 tatttggttt ttgcactaat acttccctca ttgcagatgg atgaacctct tttaaagcat
      781 catcaaaatc ttggttagtt atttttattt tatttagtat atctatggga atttttgatt
      841 cttttaaatt gatttcaggt ataattctac gtaacgatct cattgcagct tctttcgcta
      901 ccatttctaa atctgcacct acaaatccat gagtaacttt ggcataagat tttaggtcta
      961 tgtcttgttc caatggcatt cctctagtat gaatttgaag aatatcatac cgcccatcta
     1021 catctggaat accaatttct atttctctgt caaacctacc tggtcgcctc aatgcaggat
     1081 cgagtgcatt tggtctattc gtagccgcaa ttacaacaac tttacctctt gctttgagtc
     1141 catccattaa actcaaaagc tgagatacga ttcttttctc aacatcaccg gatacttcat
     1201 ccctttttgg tgctatagaa tcaatttcat ctatgaatat tatactagga gccttttctt
     1261 gtgcctgtgt gaatatatct cttaactttt cttcgctttc tccataaaat ttgctcatta
     1321 tttctggtcc gccgatagaa tagaaattag cgtttgtctc attagcaact gcttttgcaa
     1381 gcaaggtctt acccgtacct ggaggtccat gtaatagtac accttttggt gcctctattc
     1441 caattttatc aaaaagctca ggatgtctta atggaagttc aatcatttct cttacttttt
     1501 gtacttcatt tttgattcct cctatatcct cgtatgtaat tcgatcaatc tttttgtctt
     1561 gaacagaaat accagattta gaaccaattt tgaatttagt atctgagttt atcaataatg
     1621 ctcgattttg tggttttgta gatactacta tgaaacctat acgtttcccc attatattaa
     1681 agagtattac atcatctttg gaaactactc ttccatctaa tttctctgac aaataacctt
     1741 ctaatccgac tatattaaga tcctcaatag gagacatttt aatttcttct gcattttcaa
     1801 cattgacctt ttgtactttt acttgatcgt ctattccagc tgaaatattt tctcttgtgt
     1861 aaccatcaat tctaattaat cccttaccgt aatcatttgg attactggac caaagtaaaa
     1921 cataactttt tttagatgta ctctcgtgag taagctctaa aacgtcacct gttctaagat
     1981 catattcttc aataattctt ggatcaatga gtgcaattcc tcgtcctaca aatttagaaa
     2041 aggtttctgc aacttttaat gtaaatttgt tattaccaga attaggataa ttattcattt
     2101 t
//
LOCUS       DATCMF010000015         2422 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_134579, whole genome shotgun sequence.
ACCESSION   DATCMF010000015 DATCMF010000000
VERSION     DATCMF010000015.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2422)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2422)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2422
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_134579"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            251..1033
                     /locus_tag="VIL14_00190"
     CDS             251..1033
                     /locus_tag="VIL14_00190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chlorite dismutase family protein"
                     /protein_id="HEY8522156.1"
                     /translation="MSFNNNKNNKSYSSDNNDNSREKQITPVENEIKPEDIKKEEQLF
                     LNFSFFKVDPKWRWLNEIGKEEAAKEFESLLEVANTKMKVISYSTIGLRSDADFMLWM
                     IADSVEKMQILTSKIYYTVLGKYVEPSQIYLSSSRKSTYSNQVKSGFMTNQKPLKYNV
                     VYPFIKSREWYLLPFEKRKKMMEEHIEVGRKFPNIRLNTSYSFGIHDQDFMLAFETDD
                     LNDFQNLIIKLRETKVSKYVVKDTPMIVCLQKNIGQVIKSLG"
     gene            1034..1765
                     /locus_tag="VIL14_00195"
     CDS             1034..1765
                     /locus_tag="VIL14_00195"
                     /inference="COORDINATES: protein motif:HMM:NF020398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1802 family protein"
                     /protein_id="HEY8522157.1"
                     /translation="MNIVMIALKEWAIVCKALEDGKQMLLLRKGGIMEYRKGFEVKHN
                     EFLLYPTFEHQSVESIKVEYKEKLKEILEEQNKYCNNNNNNNNRKEIDKDNKNFNTSS
                     NNIIKLLAKVEDVIEISDKLILSELRDYHIWSDEYVTMRMNYNPSKPMSILLLRIYKL
                     RKPLIVDINDKWAGCKSWIDIETDREFQNSHKLKMQKTDYDTFESINTNKVETLKNEK
                     TLIDPVINDDIFYESVNNIRKVIGK"
     gene            1762..>2422
                     /locus_tag="VIL14_00200"
     CDS             1762..>2422
                     /locus_tag="VIL14_00200"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEY8522158.1"
                     /translation="MKYRKLGRSGIKVSEIGFGAWVIGLDWWGKKIDDDEAIKMLKKA
                     YDLGINFFETADMYGKGKSEKLIGQVFKEMRNEIVYSTKWGYDMYDHEQIGHNEIPQQ
                     HNPKFLQFALEKSMERLQTDYIDVYSLHNPKMDAIKNNDLFYALDGLVTEGTIKSHGI
                     ALGPAIGWKEEGLYTIKNRNITCLQTVYNLLEQDPGRSFLNAVIENSSHYIDNENVYD
                     VG"
BASE COUNT          994 a          272 c          433 g          723 t
ORIGIN      
        1 attgctacag gagctggagt tgttgtaatt acacactatg ctagaattct acggtttctt
       61 acaaaacttg ataaagttca tgtaatggca aaagggaaaa ttattaaatc tggaggaaaa
      121 gaattatcag aagaattaga gactaaaggt tacgtatggt taggtataga agaataaagt
      181 tttgttggaa tatattttaa tttttaattt taaatatata atacggttaa ttcccttttt
      241 ttaatattaa atgtcattta ataataataa aaacaataaa tcatattcat cagataataa
      301 tgataattct agagaaaagc aaattacacc agtagaaaat gaaataaaac ccgaagatat
      361 aaaaaaagaa gagcagcttt tcctaaattt ttcctttttt aaagtcgatc caaaatggag
      421 atggctaaat gaaataggaa aagaagaagc agctaaagaa tttgaaagct tattggaggt
      481 cgcaaatacc aaaatgaaag tcatttcata ttcaacaata ggtctaagaa gtgatgccga
      541 tttcatgtta tggatgattg cagattctgt tgagaaaatg cagatattaa catcaaagat
      601 ttattatact gtactaggaa aatatgttga gccttctcaa atctatctat ctagttcaag
      661 aaaatcaact tattctaatc aagtaaagtc gggttttatg actaatcaaa aaccgcttaa
      721 atataacgta gtatatccat ttataaagtc aagagaatgg tatcttcttc cttttgaaaa
      781 aaggaaaaaa atgatggaag aacatataga agttggaaga aaatttccaa atattagact
      841 aaatacatcg tattcttttg gaattcatga tcaggatttc atgctcgctt ttgaaacaga
      901 tgatctgaat gattttcaaa acttgattat aaagttacgt gaaaccaagg ttagtaagta
      961 tgttgttaaa gatactccta tgattgtctg tctccagaaa aatattggac aagttataaa
     1021 aagtttagga tgaatgaata tagtgatgat tgcacttaaa gaatgggcta ttgtttgtaa
     1081 agctcttgaa gatggaaaac aaatgttatt gcttcgtaag ggcggcatta tggaatatag
     1141 aaaaggattt gaggttaaac ataatgaatt tttactttat cctacatttg aacaccaatc
     1201 tgtcgaatca attaaagttg agtataaaga aaaactaaag gaaatattag aggaacaaaa
     1261 taaatactgc aacaacaaca ataacaacaa caacagaaaa gaaatagata aagacaacaa
     1321 gaattttaac acctcaagta ataatattat aaaattactt gcaaaagtag aagatgttat
     1381 agagatttca gataaattaa tactttcaga gttaagagat tatcatatat ggagtgatga
     1441 atatgttact atgcgaatga attacaatcc aagtaaacca atgagtattt tattattaag
     1501 aatttataag ttaagaaaac ccttaattgt tgatattaat gataagtggg ccggatgcaa
     1561 atcatggata gatatcgaaa cagatagaga gtttcagaat tctcacaaat taaagatgca
     1621 gaagacagat tatgatactt ttgaatcaat aaatactaac aaggtagaga cattaaaaaa
     1681 cgaaaaaact ctaatagatc ctgtaataaa tgatgatata ttttatgaat ctgttaataa
     1741 tattaggaag gtaattggaa aatgaaatac agaaaattag gtagaagtgg aataaaagta
     1801 agtgagattg gatttggtgc ttgggttata ggactagact ggtggggaaa aaagatagat
     1861 gatgacgaag caataaagat gttaaaaaag gcatatgatt taggaattaa cttctttgaa
     1921 actgctgata tgtatggaaa aggtaaaagc gaaaaactaa ttggtcaagt ctttaaagag
     1981 atgagaaatg aaatagttta ttctacaaaa tgggggtacg atatgtatga ccatgagcaa
     2041 ataggacata acgaaattcc tcaacagcat aatcctaaat tcttgcaatt tgcattggaa
     2101 aaaagtatgg aaagattaca aacagattac atagatgttt atagcttaca taatccaaaa
     2161 atggatgcaa ttaaaaataa tgatttattt tatgcattgg atggccttgt taccgaaggg
     2221 actattaaaa gccacggaat agcactaggt ccagctatag gatggaaaga agaaggtcta
     2281 tacacaataa aaaatagaaa tataacatgt ttacaaacag tttataatct tttagagcaa
     2341 gacccaggac gttctttttt gaacgctgtt attgaaaatt catctcatta tatagataat
     2401 gaaaatgtat acgatgtggg ga
//
LOCUS       DATCMF010000016         1795 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_200070, whole genome shotgun sequence.
ACCESSION   DATCMF010000016 DATCMF010000000
VERSION     DATCMF010000016.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1795)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1795)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1795
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_200070"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1004
                     /locus_tag="VIL14_00205"
     CDS             <1..1004
                     /locus_tag="VIL14_00205"
                     /inference="COORDINATES: protein motif:HMM:NF012432.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="lyase family protein"
                     /protein_id="HEY8522159.1"
                     /translation="SFNLLRDLERLSSSFEKINLSPLGSCAIGGTAIPIDRNYTASLL
                     GFQGLLENSIDATSSRDSMIEYLSFLSILMSTLSRMAEDFILWSTSEFNYIELSDRYS
                     STSSVMPQKKNPDPLEIIRSRTSIVIGMLISSFSLVKNLPSGYHRDLQDLKPLLSNSA
                     TIVKESLLIMKGIIDTFKVNKKNTLHSANKSYGVSLDIAEQIVIKYNIPFRKVHKLIG
                     TLVQHAVKNNNISLSQISKEEVNKILKFTHIKIDLEELMVILKDTTPEKSILFRNSYG
                     SPNPMQQKDMVNSIEKSLLIYCKVLSQRKELLYAALDNLEKEVILNTIVDSEKNNRI"
     gene            complement(1081..1175)
                     /locus_tag="VIL14_00210"
     tRNA            complement(join(1081..1143,1166..1175))
                     /locus_tag="VIL14_00210"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1117..1119),aa:Gln,seq:ttg)
     gene            complement(1215..>1795)
                     /locus_tag="VIL14_00215"
     CDS             complement(1215..>1795)
                     /locus_tag="VIL14_00215"
                     /inference="COORDINATES: protein motif:HMM:NF015940.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF354 domain-containing protein"
                     /protein_id="HEY8522160.1"
                     /translation="KKLKIDTAKKTVLIRPEEIKASYITDKNVKSSIGLIDEIVKKFS
                     DEYNILILARYLDQVDFYKYRFEKMNGTKIIETVTNGNLLLKLADLFIGAGGTMSAEA
                     ALMGKPVISITPINFYVEKYLIKMGLIKKVKNSSTLTKYIKTILSPGTMVKNKNTINM
                     NSNPINLQDRSLKIKSEMEDPIEIFKKFLFNP"
BASE COUNT          610 a          282 c          265 g          638 t
ORIGIN      
        1 attcttttaa ccttttacga gatcttgaga gactaagttc ctcttttgag aaaattaatt
       61 tatcaccatt aggatcttgt gctattggtg gaacagcaat accaatagat agaaactata
      121 ctgcttccct tttaggattt caaggcttat tggaaaattc tattgatgct acaagttcga
      181 gagattcaat gatagaatac ttgtcttttc tttcaatctt gatgagtacg cttagcagaa
      241 tggcagaaga tttcatttta tggtctactt ctgaatttaa ttatattgaa ttatcagaca
      301 ggtatagctc aacatctagc gttatgccac aaaagaaaaa tcctgatcct cttgaaataa
      361 ttcgatctcg tacttcaatt gttattggaa tgctaatatc ttcattctct ctagtaaaga
      421 atcttccatc ggggtatcat agagatttac aggacctgaa accacttttg tccaactcag
      481 caacaatagt taaagagtct ttacttataa tgaaaggtat tattgatact tttaaagtga
      541 acaaaaaaaa tactcttcat tcagcaaaca aaagctatgg tgtctctctt gatatagcag
      601 agcagattgt aatcaaatac aatattccat ttagaaaagt acacaaatta attggtacct
      661 tagtacaaca tgctgtaaaa aataacaata tttcattaag tcagatttcg aaggaggagg
      721 taaataaaat attgaagttt acacacatta aaatagatct ggaagaatta atggttattc
      781 ttaaagacac aactcctgaa aaatcaatat tattcagaaa ctcttatggg tcaccaaacc
      841 caatgcaaca aaaagacatg gtaaattcaa tcgaaaaatc acttttaatt tattgtaaag
      901 ttctatcaca aagaaaagaa ttgttatatg cagcattaga taacttggag aaggaggtaa
      961 ttttaaatac tattgttgat agtgaaaaaa ataacagaat ttaagaattt tcatattctt
     1021 gttgtttttt tgtttctatt ctatagacag aaaattaata atttgttaag aaatacttta
     1081 tagcccggcc cagattcgaa ctggggtcaa aggctccaaa ggcctttatg cttggccgct
     1141 acaatcggcg gaaaaaatta ttcctccacc gggcttccgg gcataatgtc gtgtaaatca
     1201 ctaggattat aatgttatgg attaaagaga aactttttga atatttcgat aggatcttcc
     1261 atttctgatt taatttttaa agacctatcc tgcaagttaa tcggattaga attcatatta
     1321 atagtatttt tattttttac cattgtacca ggggaaagaa tagtttttat atatttagtt
     1381 aaagtggatg agtttttgac ctttttaatt aatcccattt ttataaggta tttttctaca
     1441 taaaaattaa tcggggttat tgaaattaca ggcttaccca ttagtgctgc ttccgcgctc
     1501 attgtccctc ccgcacctat aaataaatca gcaagtttta gtaatagatt accattagtt
     1561 acagtttcta ttatttttgt tccattcatt ttttcaaatc tatacttgta aaaatcaacc
     1621 tgatcaagat atcgtgcaag aattaaaata ttatattcat cagaaaattt tttaactatc
     1681 tcatctatta acccgatcga actctttaca tttttatcag taatatacga agcttttatc
     1741 tcttctggtc taattaacac agtctttttt gcggtatcaa tttttaattt ttttt
//
LOCUS       DATCMF010000017         2489 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_598381, whole genome shotgun sequence.
ACCESSION   DATCMF010000017 DATCMF010000000
VERSION     DATCMF010000017.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2489)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2489)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2489
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_598381"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..214)
                     /locus_tag="VIL14_00220"
     CDS             complement(<1..214)
                     /locus_tag="VIL14_00220"
                     /inference="COORDINATES: protein motif:HMM:NF015545.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522161.1"
                     /translation="MVTSQISIVLAESALEIIPTELRNNHLIINYSKKVGKSVGEVFL
                     DKSYHYSAMKEKNIDFIWKRGRPDLVH"
     gene            335..634
                     /locus_tag="VIL14_00225"
     CDS             335..634
                     /locus_tag="VIL14_00225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNase P subunit"
                     /protein_id="HEY8522162.1"
                     /translation="MGKHQAKLVAQERILILIRSAFQEIGNDYKLANEQAQLAKKIAK
                     RLRIKLPYDIRQLYCKKCKLFICPGFNCRVRIGRSKIKALRITCLTCNNVHRKLL"
     gene            702..1154
                     /locus_tag="VIL14_00230"
     CDS             702..1154
                     /locus_tag="VIL14_00230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19e"
                     /protein_id="HEY8522163.1"
                     /translation="MAKVYDVPSDRFIEKLATYLKNDKKIEPPAWSYFTKTGPHTEKI
                     PQNKDWWYIRCASLLRKVYIHGPLSVEDLRSKYGGSKQRGYNLAHHVDASGGIIRIGL
                     KQLESSGYVVKKNNGRIVSDDGMKRVDRIATELHKELQKTNPELSRYS"
     gene            1169..1456
                     /locus_tag="VIL14_00235"
     CDS             1169..1456
                     /locus_tag="VIL14_00235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HEY8522164.1"
                     /translation="MSQPNQGSNDEESRRREAEAEAMRQRVLLVLLEPTARQRLANVR
                     IVKPELAGAVENYLINAAQTGRLNRALTDDELKQILINIQAPKKDFKISRI"
     gene            1563..2174
                     /locus_tag="VIL14_00240"
     CDS             1563..2174
                     /locus_tag="VIL14_00240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522165.1"
                     /translation="MNSEIKVDEFRLKIGIGSFSVFKQLLNFLAKNKIGVLLDKNGKQ
                     TLLFSEMDRIRGSLLALQLGCDIQECSKVLSWKDFEYFTSELLTMFEYNTKVNIVLSK
                     PRAQLDVVGIKKDFAITIDCKHWKYSNKTTLTIYAEKQIRRTMLWLQREKKLTKALPI
                     IITLDNAFFKFINGVPIVPILTLKSFLNEFDKTDESIFLINKK"
     gene            complement(2250..2399)
                     /locus_tag="VIL14_00245"
     CDS             complement(2250..2399)
                     /locus_tag="VIL14_00245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522166.1"
                     /translation="MDIFGNLIQQLTIGSVPVNMDTFGVWIPLTFGLAVGLAYVIASG
                     LRRPT"
BASE COUNT          933 a          362 c          424 g          770 t
ORIGIN      
        1 tgtgtacaag atctggtctc cctcttttcc aaataaagtc aatatttttt tctttcatgg
       61 cactataatg gtagctcttg tccagaaaaa cttcaccaac agacttacca acttttttag
      121 aataattaat tattaaatga ttattcctta attcggtcgg tataatttca agtgcagatt
      181 ctgctaacac tatagaaatt tgagaggtta ccaagctgat tagttttgca ttgaggtctt
      241 taatatatac tgagataatt tcatctgagt tatttccaga atgttccttg atcagaaaat
      301 ttttatttaa aacatgaagt acataatcgt aatattgggg aaacaccaag cgaaactagt
      361 agcacaagaa agaatattga tattaattag aagtgctttt caagaaatag gtaatgatta
      421 caaattagcc aatgagcaag cacaacttgc taaaaaaatt gcaaaaagat taagaataaa
      481 acttccttat gatatccgtc agttatattg taaaaaatgt aaactattca tctgccctgg
      541 ttttaattgt agagtcagaa ttggtagatc aaaaatcaag gcattacgaa taacatgtct
      601 aacatgtaat aatgtacata gaaaattgct ttgatatact tatgtgtaag attgatgaga
      661 ataaggattt ataggggtat aagaattatt gtgatcctat aatggctaaa gtttacgacg
      721 ttccatctga taggtttatt gaaaaattag ctacatattt aaaaaatgat aaaaagattg
      781 aacctcctgc atggtcatat tttaccaaaa ccggtcctca taccgaaaaa atcccacaaa
      841 ataaagattg gtggtatatt agatgtgcat cattattacg gaaagtgtat attcatggcc
      901 ctctcagtgt cgaagattta agaagcaaat atggaggaag caaacaaaga ggatacaatc
      961 ttgctcacca tgtcgatgca agcgggggaa taatacgcat aggtctaaaa caattggaaa
     1021 gttctgggta tgttgttaag aaaaataacg gaagaatagt atcagatgac ggaatgaaaa
     1081 gagtcgatag aatagcaaca gagcttcaca aagaattaca aaaaacaaac cctgaattga
     1141 gtcggtattc ttgataaatt aaagaaagat gtctcaacca aatcaaggtt ccaacgatga
     1201 agaaagtaga cgaagggaag cagaagccga agctatgcga cagagagtat tattagtgct
     1261 tttggaacct actgcaagac agcgtcttgc aaatgttaga atagtcaaac ctgaattagc
     1321 tggtgctgtc gaaaattacc ttataaatgc tgctcagaca ggaagactta atcgtgcatt
     1381 aaccgatgac gaactgaagc agattttaat aaatattcaa gctcccaaaa aagacttcaa
     1441 aattagcaga atataacaat tcattcttgc ttttgagttc aatcctacaa tacgtgtaga
     1501 ttattatcca taaattggtt cattatatta atccaaatat tcttttaagg tgtattcaag
     1561 ggatgaactc tgaaataaaa gttgatgaat tcagattaaa aataggtatc ggcagttttt
     1621 ccgtattcaa acaattatta aattttttag ctaaaaataa aattggagta ctattagata
     1681 aaaatggaaa gcagacacta ttattttcag agatggatag aattagagga tctttactag
     1741 ctctacaact aggttgtgat atccaagaat gttctaaagt attgtcttgg aaagactttg
     1801 aatattttac gtctgaactt ttgactatgt ttgaatataa cacgaaagtt aatattgtct
     1861 tgtccaaacc cagagcgcaa ttagatgttg tggggataaa gaaggatttt gcaattacca
     1921 tagattgtaa acattggaag tatagcaata aaacaactct tacaatatat gctgaaaaac
     1981 aaataagaag aacaatgttg tggttacaaa gagaaaagaa actaacgaaa gctcttccta
     2041 ttataattac tctagataat gcattcttta aatttattaa tggagtaccg attgtcccta
     2101 ttttaacttt aaaatcattt ttgaatgaat ttgacaaaac cgacgaatct attttcttaa
     2161 taaataaaaa ataatcgtag tagccaaatg cataataatt tttagtaaga caaaaagaaa
     2221 aaaggtattc taaaaaattt ttctttagtt tatgttggac gtcttaaacc agatgcaatt
     2281 acgtatgcta gacctacggc taacccgaat gtcaatggta tccatacgcc gaaggtatcc
     2341 atattaacag gcacactccc tatagtaagc tgttgtatta aattaccaaa tatgtccatt
     2401 ttcctgtagt gattagaaaa cggttgctta taagcgttta atattattac aattacatta
     2461 ttatataaat tcacgtgcta gctaaatgt
//
LOCUS       DATCMF010000018         1514 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_67989, whole genome shotgun sequence.
ACCESSION   DATCMF010000018 DATCMF010000000
VERSION     DATCMF010000018.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1514)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1514)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1514
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_67989"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(74..487)
                     /locus_tag="VIL14_00250"
     CDS             complement(74..487)
                     /locus_tag="VIL14_00250"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY8522167.1"
                     /translation="MNNDKNNIGFQQDSKVMVLDDDYDIAELVKMALQRNGFNNVSAF
                     EEPLLALEEFRKNYNHYSLVISDIRMPGLNGFEFTEYINKIKPEIKVILMSAFDIKDD
                     NLLSMKLKYNNNISGMIQKPISPKKLAKIVAETNR"
     gene            complement(496..1059)
                     /locus_tag="VIL14_00255"
     CDS             complement(496..1059)
                     /locus_tag="VIL14_00255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522168.1"
                     /translation="MVLKKKNGDDDINNNRYIEKLKTSDQTDKNVISKVDKRDISIVG
                     LLISGYDNKQISSQLQIPLSTIQRRTRNILQRGLLQHSFRPNYKQLGLKRGMIHVYLE
                     DGNMKSTAQRISAMEGITSVSIHIGNSDIVGDFVYQDSEQIVDILSTIKKLNGVDKAV
                     WSEEVFVLPVNQQNVRLPFHRLVEGAA"
BASE COUNT          441 a          301 c          214 g          558 t
ORIGIN      
        1 tcagatcctt ttattgtaat ggtatcaact ccctacgctc cccttttcgt aaggcgatga
       61 tatcagtcgc caatcaccta ttagtttctg ccactatctt tgctaatttc ttcggtgata
      121 tgggcttttg aatcattcca cttatattgt tattatactt caatttcatg gacaataaat
      181 tatcatcctt gatgtcaaat gcactcatta atattacctt tatttctggc tttattttgt
      241 tgatatattc tgtaaactca aatccattca aaccaggcat ccttatgtca gatataacca
      301 gagaataatg attgtaattt tttctgaatt cttctaatgc taataagggc tcttcaaatg
      361 cagatacatt attgaaaccg tttctctgca gagccatctt gacaagctca gcaatgtcat
      421 agtcgtcgtc taataccatc actttactat cctgttggaa accgatgtta ttcttgtcat
      481 tattcacaaa caaagctagg cagcaccttc taccaatcta tgaaatggca gtcttacatt
      541 ttgttgattt accggaagaa caaatacttc ttctgaccat actgctttgt ctacgccatt
      601 taatttcttt atagttgata atatatctac aatctgttca ctatcttgat agacaaagtc
      661 tcccacaata tcggaattgc caatatgaat agagaccgat gtaattccct ccatagcaga
      721 gattctttgt gctgttgatt tcatattacc atcctccaga tatacatgaa tcatccctct
      781 cttcaaacca agttgtttat aatttggtct aaagctgtgc tgcaacaacc ctctttgaag
      841 aatattgcga gttcttcttt gtatggtgct caatggtatt tgaagttgag aggagatctg
      901 tttattgtca tatcctgaaa ttaacaagcc aactatacta atatcccttt tatcgacctt
      961 tgaaatgaca ttcttatctg tttggtcgct agtttttaat ttttcaatat atcggttatt
     1021 attaatatca tcgtccccat tcttcttttt taaaaccaag aagatattcc tcgaatttca
     1081 tgatttgaca cactagatta tagtatatga tgcgttatta aggttttgta tcacattttg
     1141 aaaaaaaatg atatcacttt tgtcattttt aatgtgtctg aacatattat tagtcattac
     1201 taattccatg tatcattaaa cttcaagaat cgccacaaaa ttgtttttat gtaatgtatt
     1261 tgaacatatt attcaccgtt acttcacatt attagcaaca tgagccttcg acgaagcgcc
     1321 gaagattgat agaacacagt agatgaactg cacgtgacaa tttctttaaa ttacagttag
     1381 catgcattca tgaacatgat atttcggcta tgacaatcaa gcaactgtgc ttgttcttcg
     1441 cgtccaaatc gtctctcaaa atccttctga tggtataagc aatacccctt caggttttta
     1501 ccatagtatt tttc
//
LOCUS       DATCMF010000019         2664 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_2428, whole genome shotgun sequence.
ACCESSION   DATCMF010000019 DATCMF010000000
VERSION     DATCMF010000019.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2664)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2664)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2664
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2428"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(57..596)
                     /locus_tag="VIL14_00260"
     CDS             complement(57..596)
                     /locus_tag="VIL14_00260"
                     /inference="COORDINATES: protein motif:HMM:NF018627.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522169.1"
                     /translation="MNKTLAIDLDSVLADVVVTWVNEYNRLKDSNIVKEDIVVWDIHT
                     LLPITETESNLLFSDVWIYRWRDIPPTQNRIGKIIERLKTQNYRISILTRRDRKTIPY
                     VYNWLETNHIDCDDLICVFDSNPKSIYPFDILIDDAPQNIVDIKYPKKGILFDQPWNR
                     SFKWPIRINRLSDLFHCLS"
     gene            721..1779
                     /gene="twy1"
                     /locus_tag="VIL14_00265"
     CDS             721..1779
                     /gene="twy1"
                     /locus_tag="VIL14_00265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-demethylwyosine synthase TYW1"
                     /protein_id="HEY8522170.1"
                     /translation="MSCSDEYVYHDTQNNLINITPSLQAKLRKAKYGVFNHSAVELCH
                     WTKKSFYDEGNCYKHKFYGISTHRCMEMTPTAMNCENRCIYCWRPTEFYDTLQMPEHL
                     VDEPDVIINQLLKERERLIMGFYGNPKSNKEKLDESLFPEHYAISLSGEPTMYPKLPN
                     LIKYLKSLKNTKSIFLVTNGQEPEMINRLIKEDALPTQLYLSTNASNRKMFYQINRPK
                     YKDAWDRWLTTLNILADINTRTVLRMTLIRNYNSNLNNIPEFVNVINKANPHFIEIKS
                     YMHIGMSTNRLEHNNMLDVKEVREFTNNLQKNLQDYNIMDESEISRIVVLQNQNRYTN
                     RWIKEYFEPPIIQEQTLT"
     gene            complement(1908..2387)
                     /locus_tag="VIL14_00270"
     CDS             complement(1908..2387)
                     /locus_tag="VIL14_00270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522171.1"
                     /translation="MFEKFINFYLRYQNINLKISFILISLQLLHLYWLTTDVVIYRLT
                     GIDYFIGLSDFILLFIIIDYIEIPALVSGLIYYLFTIIYDKKEKEKRFKNTVLLILLA
                     IQSIHIFWITDDIVYATFVGSDLIYMPEYFAWIAILIDYLELPVIYDLLKRIVRKEK"
BASE COUNT         1007 a          354 c          365 g          938 t
ORIGIN      
        1 gcattaatag aattagataa catttaaatt ttttcaacaa atgatccttc taaaattcag
       61 gatagacaat ggaacaaatc tgataatcgg tttattctaa ttggccactt aaaacttcta
      121 ttccaaggct gatcaaataa aatccctttt tttggatatt ttatatcaac tatattttga
      181 ggagcatcat caattaaaat atcaaatgga taaatacttt ttggattaga atcaaaaacg
      241 catattagat catcgcagtc tatatgatta gtttccaacc aattatagac ataaggaata
      301 gtttttctat cccttcttgt tagaatagat attctataat tttgagtttt tagtctttct
      361 attatttttc caatcctatt ttgagtaggt ggaatatctc tccatctata tatccataca
      421 tctgaaaata ataaattact ttcggtttca gttattggta aaagagtatg aatatcccaa
      481 acaacgatat cttcttttac tatattagaa tcttttagtc tattatattc attaacccat
      541 gtcactacaa catctgctaa aaccgagtct aaatcaatag caagagtttt attcaatcta
      601 ataataacag tgttaggatg cctatatgta aaagtagttg tatttttttt gcatttagta
      661 attacattag ttgataccta ttaatcaaaa tataaataag ttgaatatgt attttagtta
      721 atgagttgtt cagatgaata tgtttatcac gatacacaaa ataatttgat aaatattact
      781 cccagtctac aagcaaaact gcgtaaggca aagtacggtg tattcaacca ttctgcagtt
      841 gaattatgcc attggaccaa aaaatcgttc tatgatgaag gtaattgcta taaacacaaa
      901 ttctatggta tatccactca taggtgtatg gaaatgacac ctactgcaat gaattgtgaa
      961 aataggtgta tatattgttg gcgtccaaca gaattctatg atacattaca aatgcctgag
     1021 catttagttg atgaaccaga tgtaattata aatcaactat tgaaagaaag agaaagatta
     1081 attatgggat tttacgggaa tcctaaatct aataaggaaa aactagatga atcgttattt
     1141 ccggagcatt atgcaatttc tttatctgga gaacccacaa tgtatcctaa acttccaaat
     1201 ttaattaaat atcttaaatc attaaagaat acaaagtcca tatttttggt aacaaatggc
     1261 caggaaccag aaatgattaa tcgtctaata aaggaagatg ctttaccaac tcagttatat
     1321 ttgtctacaa atgcatcaaa tagaaaaatg ttttatcaaa taaatagacc taaatataaa
     1381 gatgcttggg atagatggct tactacatta aatattctcg ctgacattaa cacaagaact
     1441 gttttaagga tgactcttat ccgtaactat aattctaatt taaataatat acctgaattt
     1501 gtaaatgtaa ttaataaagc taatccacat tttattgaaa ttaaatcata tatgcatata
     1561 ggaatgtcaa ccaatagact agagcataac aatatgcttg atgttaaaga ggtaagagaa
     1621 tttactaata atcttcaaaa aaatttgcaa gattataata tcatggatga aagtgaaatt
     1681 tctcgaatag tagttttgca aaatcaaaat agatatacta atagatggat aaaagaatat
     1741 tttgaacctc ctatcattca agagcaaact ttgacttaaa tcttatcagc tcttgtatac
     1801 tattttatat ttattggtat attgaatggt cactttataa tgattgtgtt atattcttat
     1861 ttctgcagac tagattctcc atactatata atcgattgag tcttttttta tttttctttt
     1921 ctgacgatcc tttttaaaag atcataaatt acgggcaatt ctagataatc tattagaatt
     1981 gcaatccaag caaaatactc tggcatatag attagatcgg atccgacaaa agttgcataa
     2041 acaatgtcat cggtaatcca aaagatatgg atggattgta ttgccaatag aattaataag
     2101 acggtatttt taaacctttt ttctttttct tttttatcat aaattatagt aaagaggtaa
     2161 tatattaaac cagaaactaa agctggaatt tctatatagt caattataat aaataataaa
     2221 ataaaatcag atagtcctat aaaataatcg attcctgtta gacgatatat tacaacatct
     2281 gttgtaagcc agtagagatg taataattgt aatgagatta atatgaatga gatttttaag
     2341 ttaatatttt gatatcgaag ataaaaatta ataaattttt caaacacaat aaatcaagtt
     2401 ttcatagttt ttattattat taatttttta cctataaatt cataaatata ttgagctatt
     2461 ccaaattact ccttaattct attgaattaa gaaaataatg taggggattc attaaaaagt
     2521 aaatattcta caataatgta attttatagt atattgaatg gattgaatac cactgaatta
     2581 atgaaaattg gactcgattt agctggatgg aaaaaaatac cagctgatag tgcagttcat
     2641 gtaaagggta ataatatcaa aaag
//
LOCUS       DATCMF010000020         1559 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_2584, whole genome shotgun sequence.
ACCESSION   DATCMF010000020 DATCMF010000000
VERSION     DATCMF010000020.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1559)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1559)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1559
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2584"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..218)
                     /locus_tag="VIL14_00275"
     CDS             complement(<1..218)
                     /locus_tag="VIL14_00275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522172.1"
                     /translation="MNSKIHSIIIQSLILTFTLITAGIPTLFEGVLAQNDELWAQQPK
                     NDTGLSQGEASEGSSTDTSNTDTSNTDT"
     gene            complement(344..817)
                     /locus_tag="VIL14_00280"
     CDS             complement(344..817)
                     /locus_tag="VIL14_00280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522173.1"
                     /translation="MLQINNKSQNKSLGIIIIITALLFMSFANMGSILKTYAQEKTAN
                     PSLELTAKLVGTEYRWIGSNNTTNPTLNLTSGVDNQIAIKSILGDPTEHELVIEGVSG
                     KGLKTEELISSDEIENGSSTTINFNSTDIDAGNYDSIDYYCEYHPETMLGKLQIN"
     gene            1236..>1559
                     /locus_tag="VIL14_00285"
     CDS             1236..>1559
                     /locus_tag="VIL14_00285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522174.1"
                     /translation="MSLSFIVIAPLSIGTSYAQKLKDPDFAYGIVTIDNVKGRSLEVT
                     AFIGAGDSIGTGAGEQDKKIQGSPEPIDETSTQVRHTFKWDNDDFPPNGIIRGTAWTA
                     CIEFKN"
BASE COUNT          535 a          221 c          243 g          560 t
ORIGIN      
        1 ctggtatctg tgttactggt atctgtgtta ctggtatctg tggaagatcc ttccgatgct
       61 tccccttgtg acaaacctgt atcatttttt ggttgttgcg cccatagttc atcattttgt
      121 gccaatacac cttcaaatag tgtcgggatt ccagccgtaa ttaaagtgaa tgtaagaatt
      181 aatgattgaa taattataga atgaattttt gaattcatga gaatttgtag taaataaagt
      241 atataataat taaagacatg aacttgtatt attgattttt tattatatta ctaattatta
      301 tatactataa aaaattacat aggtcaaaat ttgaaataat aaattagttt atttggagtt
      361 tgcctagcat tgtttcagga tggtattcgc aatagtagtc gatggagtca taattgccag
      421 catcaatatc tgttgaatta aagttgattg tagtagacga accattttct atttcatcac
      481 tcgaaattaa ttcttctgtc tttagacctt tgccagagac accttctatt actaattcat
      541 gttctgttgg atctcctagt atacttttta tagctatttg attgtctacg cctgatgtaa
      601 gatttaatgt aggattagta gtattgttag atccaatcca tctgtattca gtacctacta
      661 atttagcagt taattcaaga gatgggtttg ctgttttctc ctgtgcatat gtctttaaaa
      721 ttgatcccat atttgcaaag gacatgaata ataatgcagt tattattatt ataattccta
      781 aacttttgtt ttgtgattta ttattgattt gtaacattta ctttgaatga gtatatagag
      841 tttataatat ttatactaaa tgtaattaat aaaaatataa gaacctaatg aaagataaca
      901 aatagaagga aatttatgcc aaaatttttg gtagctcttt gcaatctatt atcccatttg
      961 agtaactata gattcactat tattacgata atacaataaa tataattcat tgcaaagatg
     1021 caagttataa ataaatatga aatgtaaaca tattaaaaaa aataaataaa tatattcttg
     1081 agttatatgc aaattatacg tattatctaa atctctaaat tatttcggaa aattaaatct
     1141 aaacttttat gctaaatcat ttaacgcatt gcatataaga caaatattca ttatcacata
     1201 atatgaaaat agtacccata ttactattag ctttattgag tctgagcttt atagttatag
     1261 ctcctctttc cattggaacc tcctatgcac aaaagctaaa ggatccagat tttgcatatg
     1321 gcatagtaac aatagataat gtaaaaggca gaagtcttga agtcacggca ttcataggtg
     1381 ctggagattc cataggtact ggagctggtg agcaggataa aaaaatccaa ggcagccctg
     1441 agcctattga tgaaacttct acacaagtaa gacacacatt caaatgggat aacgacgatt
     1501 tccctccaaa tggtattata cgaggtacag catggactgc ttgtatagaa ttcaaaaat
//
LOCUS       DATCMF010000021         1545 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_599009, whole genome shotgun sequence.
ACCESSION   DATCMF010000021 DATCMF010000000
VERSION     DATCMF010000021.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1545)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1545)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1545
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_599009"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..324
                     /locus_tag="VIL14_00290"
     CDS             <1..324
                     /locus_tag="VIL14_00290"
                     /inference="COORDINATES: protein motif:HMM:NF014470.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015031 - protein transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HEY8522175.1"
                     /translation="LISLGNLLMQMPFGFEWIFIIVIIVVLFFGVKKIPELAKSFGKA
                     TAEFEKAKIEAKRDLEKYKKENTDIEREKLESIAETLRIDYTDKNDEALKKAIENEIN
                     KNKNT"
     gene            380..1477
                     /locus_tag="VIL14_00295"
     CDS             380..1477
                     /locus_tag="VIL14_00295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate--phosphoribosylaminoimidazolecarboxamide
                     ligase family protein"
                     /protein_id="HEY8522176.1"
                     /translation="MINLAQVDDIVKNYDKENVNIGVLGSHSALEVMDGCVDECIRTI
                     CICQKGRETPYLRFKRLSNTVIILNRFIDIINPESQKKLRDLNVLMIAHRAFSVYIGY
                     DNIENKFLIPIFGNRYLLRAEERTAPKNQYYLLNKAKIKHPELKKPSDISGPSIVKVQ
                     EAKRKLERAFFFVNSYNDYLEKTEIKIKSGLISKTDLESSIIEEYIIGTYFNFNFFYS
                     PLKKDLEFLGIERRLQTDLNDFTTSLTAKQQLELNIELQNIEIGHTPASIRESMLEKV
                     FDLGDKFVNAVKEEYPPGLIGPFSLQSIITKDLDIFVYDVSFRVPGNPILSTTSPYTK
                     YYYGTTFGVGRRIAMEIKDAILNDRIKEIVT"
BASE COUNT          600 a          185 c          248 g          512 t
ORIGIN      
        1 ttgatatctt tgggcaatct tttaatgcag atgccatttg gttttgaatg gatttttatt
       61 atcgttatta tagttgtttt attctttgga gtaaaaaaaa tccctgaatt agcaaaatct
      121 tttggtaagg ctaccgcaga gtttgaaaaa gctaaaatcg aagctaaacg agatctagag
      181 aaatataaaa aagaaaatac tgatattgaa cgagaaaaac ttgaatctat tgccgaaact
      241 ctaagaatag attatactga taaaaatgat gaagctttga agaaagctat tgagaacgaa
      301 atcaataaaa ataaaaatac gtaatataca caatattttt tccttaaaca atttattata
      361 ctattaaaat tcattaataa tgattaattt agctcaggtg gatgatattg ttaaaaatta
      421 tgataaggaa aatgtcaaca ttggtgtttt gggtagtcat tcagcacttg aagtgatgga
      481 tggatgtgtt gatgaatgta ttaggactat atgtatctgc caaaaaggaa gagaaacacc
      541 ttatttgaga tttaaaagat tatctaatac tgtaataatt ctaaatagat tcattgatat
      601 cataaaccct gaatctcaaa agaaactaag agatctgaat gtcttaatga tagctcatag
      661 agctttttcg gtttacattg gatatgataa catagaaaat aaatttttaa tcccaatttt
      721 tgggaatagg tatctgttaa gagctgagga aagaacagca cctaaaaatc agtattactt
      781 gttgaataaa gctaaaatta aacatccaga attaaaaaaa cctagtgata tatcaggacc
      841 atctattgtc aaagttcagg aagcaaaaag aaagttagaa cgtgcttttt tctttgttaa
      901 ttcatataat gattatttag aaaaaaccga aataaaaata aaaagtggat taattagtaa
      961 aacagattta gaatcttcta taattgaaga gtatataatt ggtacttatt ttaattttaa
     1021 tttcttttac tctcctctaa aaaaggatct tgaatttttg ggtatagaaa gaagattaca
     1081 aacagatcta aatgatttta cgacctctct caccgcaaaa caacaattag agttaaatat
     1141 tgaattacaa aatatagaga taggacatac gcctgccagc atccgtgaat caatgttaga
     1201 aaaagtcttt gatttgggag ataaatttgt aaatgctgtt aaagaagaat atcctccagg
     1261 attaataggt cctttttcac ttcaaagtat tattactaaa gatttagata tatttgtata
     1321 cgatgtatca tttcgtgttc ctggaaatcc aattttatct actacaagtc catacacaaa
     1381 atattattat ggtactacat ttggagtcgg gaggagaatt gctatggaaa taaaagatgc
     1441 tattttaaat gatagaatta aagagattgt tacatagatg atttaaaatg cacacaagat
     1501 atctttaata acattaggaa tctcttctag cttcttgata gtata
//
LOCUS       DATCMF010000022         2635 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_2896, whole genome shotgun sequence.
ACCESSION   DATCMF010000022 DATCMF010000000
VERSION     DATCMF010000022.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2635)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2635)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2635
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2896"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            314..1621
                     /gene="tuf"
                     /locus_tag="VIL14_00300"
     CDS             314..1621
                     /gene="tuf"
                     /locus_tag="VIL14_00300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation elongation factor EF-1 subunit
                     alpha"
                     /protein_id="HEY8522177.1"
                     /translation="MSSSKKPHMNLVVTGHVDNGKSTIVGHLMVDLGVIDQRTIEQFA
                     KESEATGKGDTFKYAWVLDSIKDERDRGITIDLAFQKFETTKFFFTLIDAPGHRDFIK
                     NMITGASEADVAILVVSTKPGETEAATEPGGQAREHAFLCRTLGVGQVVVALNKMDDS
                     NYSEARYNEVKGIAEKMLKMVGYNTSKVNFVPVSGWKGDNLAKKSENMGWYKGPTLLE
                     ALDSFEPPEKPIGKPLRIPIQDVYSITGVGTVPVGRVETGVVKANDKVIVMPAGVTGE
                     VKSIETHHTQMNSAEAGDNIGFNLRGIDKKSIHRGDVIGHPDKPPSVAKEFEAQIIVI
                     HHPTAMAPGYTPVLHAHTAQVAATLSDFVAKIDPKTGGVLEEKPKFLKTGDAAIVRIR
                     PVRPLAIETFKEFPEIGRFALRDMGTTIAAGVIKSITEKYEKK"
     gene            1637..1945
                     /gene="rpsJ"
                     /locus_tag="VIL14_00305"
     CDS             1637..1945
                     /gene="rpsJ"
                     /locus_tag="VIL14_00305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HEY8522178.1"
                     /translation="MPQEARIKLTSTNLSTLEGVCSEIKGIGEKSGINLKGPYPLPTK
                     KMKVVTRKSPCGQGTNTWDKYELRIHRRVIDLGADDKAIRQLMRLRIPDDVYIEVSLT
                     "
     gene            2032..2601
                     /locus_tag="VIL14_00310"
     CDS             2032..2601
                     /locus_tag="VIL14_00310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522179.1"
                     /translation="MNLFWSVVLLQSLLLLLFNLNQIFAESSISKNDFKSYENKKYSV
                     ELMYPSNWTYVEFIDQISDNDLFIIISFISPLESSLDTFQEYFTIKSKILDPGDSFSN
                     HFNSYLEKLKNTITNINISNIEDISNRNKFIHYSFSPPQSGLIINKDEYIFLTNSNNV
                     FHIEFTSNGDDYKTFKPLINKIMSYVRLT"
BASE COUNT          979 a          381 c          438 g          837 t
ORIGIN      
        1 atttttctga ttctaatgca atcttagtaa taaaaccaaa ggcttgagta aaatttttaa
       61 attcaaaaga tttacataat ttaccgtttt cgatttgcca gttttttatt tcttttaact
      121 tcacttcgat ttcattatca gaaagttttt tataattatt caactaaaaa atactttact
      181 tgattactat taatgtattt tactgtagtc aacaattata gtgaaatatt ttttttactt
      241 atcttacctt tgtagaagat attcattttt gataatcgaa atataaatac agcagatgaa
      301 tactcttccg tgtatgagct caagcaaaaa accacatatg aatctcgtgg ttacaggaca
      361 tgtagataat ggtaaatcta caattgtagg ccatttaatg gttgatttag gagttattga
      421 tcaaaggact atagaacaat ttgcaaaaga atcagaagct actggtaagg gtgatacttt
      481 caaatatgca tgggttttag atagtattaa agatgaaaga gatcgaggaa ttaccataga
      541 tctagctttt cagaaatttg aaactacgaa gtttttcttt acgttaattg atgcccctgg
      601 tcatagggac tttattaaaa atatgataac aggtgcctca gaagctgatg tggctatttt
      661 agttgtatcc accaaaccag gagaaacaga agccgcaaca gaacctggag gtcaagcaag
      721 agaacatgca tttctatgta ggacattagg agtaggacaa gtagtagttg cattaaataa
      781 aatggatgat tccaactatt cagaagcaag gtataatgaa gtcaaaggta ttgcagaaaa
      841 aatgctgaaa atggtgggtt ataacaccag taaagtaaat tttgtccctg tctctggatg
      901 gaaaggtgat aatttagcaa aaaaatctga aaatatgggt tggtataaag gaccaacttt
      961 attagaagca ctagattctt tcgagccgcc agaaaaacca attgggaaac ccttaagaat
     1021 tccaattcaa gatgtatatt caattactgg tgtaggtact gttccagtag gtagagtcga
     1081 aacaggtgtt gttaaggcta atgataaggt aatagtcatg cctgctggag taaccggaga
     1141 agttaaatct atagaaacgc atcataccca gatgaattca gccgaagcag gtgataacat
     1201 cggatttaat ttaagaggaa ttgacaaaaa atctattcat agaggggatg ttatagggca
     1261 tcccgataaa cctccaagtg ttgctaaaga atttgaagct caaataatag taatccatca
     1321 tccaactgct atggcaccag gttatacacc agttttacat gctcatacag cacaagtcgc
     1381 agcaacttta tcggattttg ttgcaaaaat tgatcctaaa actggtggag ttttagaaga
     1441 aaaaccaaaa tttcttaaaa caggagatgc agcaattgta agaattagac cagtcagacc
     1501 tctggctata gaaactttca aagaattccc tgaaattggt agatttgcat taagggatat
     1561 gggtactaca attgcagctg gagttattaa atccattact gaaaaatacg aaaagaagta
     1621 aaagtgaaat attacaatgc ctcaggaagc tagaataaaa ctaacaagca caaatctttc
     1681 taccttggaa ggagtttgtt ctgaaataaa agggataggt gaaaaaagtg gtataaattt
     1741 aaaaggtcct tatccactgc ctacaaaaaa aatgaaagta gtaacaagga aatctccctg
     1801 tggccaagga acaaatacat gggataaata tgagttaagg attcatagac gagtaattga
     1861 tttgggtgcg gatgataaag cgattagaca acttatgaga ttgagaatac ccgatgatgt
     1921 ctatatagaa gtatctctca cttaaatttt tataatcatg cctaaccaat aatctttgta
     1981 ccaattgtta ccatattaag gaataactcc cattaagatt aaaaatataa aatgaattta
     2041 ttctggtcag tagtgttatt acaatcactt ttattattac tctttaattt aaatcaaatt
     2101 tttgcagaat catctatatc taaaaatgat tttaaatctt atgaaaataa aaaatattct
     2161 gtagaattaa tgtatccctc aaattggaca tatgttgaat ttatagatca aatttctgat
     2221 aatgatctct ttataataat tagtttcatt tctccattag agtcttctct agatacattt
     2281 caagaatatt ttactattaa atcaaaaatt ctggatcccg gagattcttt ttctaaccac
     2341 tttaattcat atttagaaaa actaaagaac actataacaa atataaatat atccaatata
     2401 gaagatatct ccaatagaaa taaatttata cattattcat tttcgcctcc acaatcggga
     2461 ttaattataa acaaagatga atatatcttt ctaacaaatt ctaataatgt atttcatatt
     2521 gaatttactt ctaatggtga tgattataaa acattcaagc cattgattaa taaaataatg
     2581 tcatacgttc gtcttactta acatgatatt tgcggtatta taaaaaaagt aattg
//
LOCUS       DATCMF010000023         1610 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_3009, whole genome shotgun sequence.
ACCESSION   DATCMF010000023 DATCMF010000000
VERSION     DATCMF010000023.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1610)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1610)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1610
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3009"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(10..297)
                     /locus_tag="VIL14_00315"
     CDS             complement(10..297)
                     /locus_tag="VIL14_00315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522180.1"
                     /translation="MDETRQKVIKFHGTEVKNIMISFLRSPTGNPATKVIEEFNAIKS
                     SENCETINVQVVADYVTITFYQNESSNILIRRELIPTHNIEHILIDDLRDR"
     gene            complement(450..869)
                     /locus_tag="VIL14_00320"
     CDS             complement(450..869)
                     /locus_tag="VIL14_00320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522181.1"
                     /translation="MNPNTKKQHKSRKDNTSNKTSTMDVTNDPKTSNDIIDIDDSPDV
                     ATWNKEVTRNKDHIAKDIKISEETKNKYRITKIHPEIPPTTTIGLRREDNDNKDNQVD
                     PANQKDVDRIYNSGGKLTDDANLFNNKRKYTRNQKGK"
BASE COUNT          523 a          199 c          185 g          703 t
ORIGIN      
        1 agtaggggat tatctgtctc ttaaatcatc aattaagatg tgttctatat tatgagtagg
       61 aattaattct cttcttatta aaatattaga actttcattt tggtaaaaag tgattgtcac
      121 ataatcagca actacttgta catttatagt ttcacaattt tctgaagatt taattgcatt
      181 aaattcttca attacttttg tagctgggtt accagtcgga cttcttaaaa aactgatcat
      241 aatatttttg acttctgtgc catgaaattt tataactttc tgtcgagtct catccataaa
      301 tataaaatat attacataag caaaaaatgt ttccaatagt tttataatag ttactaaact
      361 ctatattctg caaatctaca atttatccat atctttcaat ttttttatta tctataaata
      421 ttgaaattct tcaaaaataa gatcttgtct tatttacctt tttggtttct agtatatttt
      481 cttttattgt taaatagatt agcatcatct gttagtttcc cgccagaatt gtagatcctg
      541 tctacatctt tctgattggc aggatcaacc tgattgtctt tattatcatt gtcttctctt
      601 cttagaccaa tagtagtagt aggaggaatt tcaggatgaa ttttggtaat tctatattta
      661 tttttagtct cttctgatat tttaatatct tttgcaatat gatctttatt tcttgtaacc
      721 tctttattcc aagttgcaac gtcaggagaa tcatctatat caattatatc atttgatgtt
      781 tttggatcat ttgttacatc catagtagat gttttattag atgtattatc ttttcttgat
      841 ttatgttgtt tctttgtatt tggattcatc ttattgtttt aagaaaaaga tatatttaag
      901 ttagtgttac ttttgaattg ctaatttttc ttatttatat tacattttta ttatcaagaa
      961 tatttatttt agtttaattt tttatttaat ttatcaatat catactgaat aatacacaaa
     1021 ttacaatttc cgaaggtcat agttttatta cctattctag tctttgttgg tatgatattt
     1081 tagaacattt tataacctat acagatctta attctaatat aatgtctctc tattcacaag
     1141 gttaagggta aatgatctta actttttcga tagtgagggc cttaaattct ctttacaata
     1201 gtaatatttc aagcgttttg atcctgtatt tctgttaact taattttgat attataattg
     1261 ttagaggtta acaaatttct tttatggtaa aataatattt ttctaattaa tctaaatact
     1321 atattctatt ggattctact ttacaccgat ttcatttaaa ttttaaaaga gtgataacat
     1381 tcaagaatta ttattaagat ttaacattta ctattgaatt taattcacat tttatttgaa
     1441 ttagattgtt aaagtaactc taaaatctac ttattgacag ttatataagt acaagtaatg
     1501 aaattaaagt taatagaatt catttatgac aaaaaatatg tatcaaaata ttggtaaaca
     1561 ataaaaaaat taactcaatt tatatatctt tttagagtca ttagaaaaaa
//
LOCUS       DATCMF010000024         2837 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_136250, whole genome shotgun sequence.
ACCESSION   DATCMF010000024 DATCMF010000000
VERSION     DATCMF010000024.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2837)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2837)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2837
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_136250"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(208..1518)
                     /locus_tag="VIL14_00325"
     CDS             complement(208..1518)
                     /locus_tag="VIL14_00325"
                     /inference="COORDINATES: protein motif:HMM:TIGR01777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01777 family oxidoreductase"
                     /protein_id="HEY8522182.1"
                     /translation="MNLIDQKGGINNGAISIFRINFGPITFKWVAKHFGYIHNLQFQD
                     KMIKGPFKKWVHTHSFIPQNSFHQCIIEDKIEYMPRFGKIGSKILQKRMQNYLNQLFL
                     YRSRILVNDLFLEKITQEKGKRILISGSHGLIGSSLIPLLTSIGRHKISRLVRKANNN
                     NMDLLPETNKEDKKTIFWDPQYNKLDPYELEGFDIIIHLAGENIFGRWTDIKKQRIFD
                     SRVGSTKLLSESLTKLSHPPSLLICASAIGYYGDRPNEYLAEDSNPGKGFLSEVCQKW
                     EKATKEATEIGIRVVNTRFGVVLTPKGGILQKLLSPFKLGLGITIGNKDQYISWVSIE
                     DVIKSIFYSITNTSIKGPINIVSPNPVTNLEFSEILKKIFNPKLSMSISQNIPKLIFG
                     EMSKEVLSTNTYVIPKKLVSTDYKFFSSDLEDSLRFLLGKIETK"
     gene            1955..2548
                     /locus_tag="VIL14_00330"
     CDS             1955..2548
                     /locus_tag="VIL14_00330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522183.1"
                     /translation="MSFIQYLLFFFGFTLFLYLNNSNIIYSHIHTNNQIVIQEILDQS
                     NKIKVQFGYDQEKIKINTLADLKFSVLNSTTEEHIKNFLARVVVTEGSEVFGFDNIKV
                     NDGDFSVKHSFANYGTHQVILRIDTNSSITPAAFDVIVPSYQSSSSSPFLADSDKSKL
                     DKDNTSTKSFTTYLIIGVGVAVSIGMTIILLSILKKK"
BASE COUNT          993 a          389 c          364 g         1091 t
ORIGIN      
        1 cagactttct tataaaaaat atacataatt atataatatt agtatcaaat aatataatta
       61 aaagaatgat aactatacaa aacatgcaga tctgttaaat tctttgaaaa aacacattag
      121 ataaaattat acaattaaaa aaaggttgac taataaaaaa gtgtgtatat taatttaggt
      181 tattatatac aatatcttat tttgatatta ttttgtttct atttttccaa gtaaaaatct
      241 aagtgaatct tctaaatctg aactaaaaaa cttgtagtct gttgaaacta attttttggg
      301 aatgacataa gtatttgtag aaagtacttc ctttgacatt tcaccaaata tcaatttggg
      361 tatattttga cttattgaca ttgatagttt tggattaaat atctttttga gtatctctga
      421 aaattctaaa tttgtaactg gatttggtga tacaatgtta ataggacctt taatggaagt
      481 atttgttatt gaataaaaaa tactttttat cacatcttct attgacaccc aactgatgta
      541 ctgatcttta tttccaattg ttattcctaa acctaatttg aaaggactta gtaatttttg
      601 taaaataccc ccttttggag ttaataccac accaaaacgt gtgttgacta ctcttattcc
      661 tatctctgtt gcttctttag tagccttttc ccatttttga catacttcag agagaaatcc
      721 ttttccaggg ttgctatctt ctgctaaata ctcattaggt ctatctccat aatatccaat
      781 tgccgaggca catattaata gcgaaggagg atgtgatagc tttgttaaag attccgataa
      841 aagtttagta cttccaacac ggctatcaaa tattctttgt ttttttatgt ctgtccatct
      901 tccaaatatg ttttctcctg caagatgaat aattatatca aatccctcca gttcataagg
      961 atctaattta ttatattgag gatcccaaaa aatagttttt ttatcctctt tatttgtttc
     1021 aggaagtaaa tccatattgt tattatttgc ctttcttaca agacgactaa tcttgtgtct
     1081 acctatacta gttaataatg gaataaggga tgatcctatt aatccgtgag aacctgaaat
     1141 aagaattctt tttccctttt cctgtgttat tttttcaagg aaaaggtcat taactaaaat
     1201 acgtgaacga taaagaaata attgattcaa gtaattttgc attctctttt gtaaaatttt
     1261 agatccgatt ttaccaaatc taggcatata ctctatttta tcttctataa tacattgatg
     1321 aaatgagttt tgaggtataa aagaatgagt atggacccat tttttgaagg ggccttttat
     1381 cattttatct tgaaattgta aattgtgaat ataaccaaaa tgtttagcaa cccatttgaa
     1441 agttattgga ccaaaattta tacggaaaat tgaaatagca ccattattaa ttcctccttt
     1501 ctgatcaatc agattcaaat tactccaagg aggaataagt ctttctaaag caccatttcg
     1561 tgtatgataa tcaaaaagat tatgtatgtt actggtgatt aaagatcttt ttacgaatat
     1621 atttgaacta ttctcattaa ttattttgat tcactatata caaaatatac aagataattt
     1681 atttaattat tattatcata atcgctataa actaggcaca ataaagtcaa aattttccac
     1741 tattttagtc ttaaaagaaa aatttgaaaa taacaatatc aattctgaac caatacataa
     1801 tttaggttta aatttagaaa aattttatat ttataattga cgttctatat ttaaaataaa
     1861 acttctacaa taaagatagt ggtatgggtt ggtaagctgt caaaggagaa ccatgaattt
     1921 taaataaatg ataaattatc attttaagta aaagatgtct tttattcaat atttgttatt
     1981 cttttttggt tttacattat ttttatatct aaataattcc aacattattt attctcacat
     2041 acataccaat aatcagatcg tcatacaaga aatactagac caaagtaaca aaattaaagt
     2101 tcaatttggg tatgatcaag aaaagataaa aataaatact ttagcagatc ttaaattcag
     2161 tgttttaaat tcaacaacag aagaacacat taaaaatttc ttagcaagag tagttgttac
     2221 agaagggtca gaagtattcg gatttgataa tataaaagtg aatgatggtg atttttctgt
     2281 gaaacattct tttgctaatt atggaactca tcaagttatt ttaaggatag atacaaattc
     2341 ttctattacg ccagctgcat ttgacgtaat tgtaccttcc tatcaatcat catcttcatc
     2401 tccatttctt gcagattcag ataaatcaaa gttagataag gataatacaa gtacgaaaag
     2461 ttttacaact tatttaatta ttggagtagg agttgctgta agtattggaa tgacaataat
     2521 attattatct attttaaaga aaaaataata attctaaagt ctattgagtt atcctgaatt
     2581 tccttttgtg actgttctat aaaattaccg taaaataatt tacaattatt aaattgatca
     2641 ttttcattat taatatttga ttgtttaatt ttagctaata tttctattct ctttctgtct
     2701 ctgatttttt ggtactcctt tgatatagtg gattttcctt gccttaactt ttctttgttt
     2761 tctcctcctt tttcgataaa gataattttg acattaagtg agaattctca ttataacagg
     2821 attcagtaac ataatgc
//
LOCUS       DATCMF010000025         3319 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_3480, whole genome shotgun sequence.
ACCESSION   DATCMF010000025 DATCMF010000000
VERSION     DATCMF010000025.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3319)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3319)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3319
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3480"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2111)
                     /locus_tag="VIL14_00335"
     CDS             complement(<1..2111)
                     /locus_tag="VIL14_00335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDC48 family AAA ATPase"
                     /protein_id="HEY8522184.1"
                     /translation="MSFDSIDNNDNKKSSNNKGNGKATLKVAEAEQRDIGRKIVRIDP
                     DAARSLNVMTGDALELSSFGNNAVLLSWPGRDKDRGTSLVRIDGYTRNKLDVGIGDTI
                     EVKKVESKDAKSITFAPTEPLRIIGAEQYLAESLNGQLMTKGDIIPLNVMGQRIDLVV
                     ISTDPSGPIIINDATKVTVSEDSAKAVQASQEGKVPSITYEDIGGIRNEIARVREMIE
                     LPLRHPELFKRLGVEAPKGVLLHGPPGTGKTLLARAVANETNANFYSIGGPEIMSKYY
                     GESEEKLRNVFEQAEKNAPSIIFIDEIDSIAPKREEVSGEVERRIVAQLLSLMDGLKS
                     RGKVVVIGATNRVNAIDPALRRPGRFDRELEIGVPDREGRLEILQIHTRGMPLAKDVN
                     LEKLADISHGFVGADLQSLSKEAGMRSLRRILPNIDLSSESIPSDTLRKIIVTMNDFM
                     DVIKEMEPSAMREVFVEIPDISWDDIGGLESIKQEMQEAVEWPLKYQGIFTFADAVPP
                     KGILLYGPPGTGKTLMAKAAANESEANFISIKGPELLSKWVGESEKGVREIFRKARQA
                     APCIIFFDEIDAIAPKRGGDFGDSHVTERLISQLLTELDGLEILTNVVVIGATNRPDI
                     VDAALLRPGRFDRLLYVPPPDRDSRIQIIKIHIKKKPLDDSVDIEKLADQTEGYTGAD
                     IASLSSAAVMLALREHVSKYK"
     gene            complement(2521..>3319)
                     /locus_tag="VIL14_00340"
     CDS             complement(2521..>3319)
                     /locus_tag="VIL14_00340"
                     /EC_number="4.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_function: GO:0016849 - phosphorus-oxygen lyase activity
                     [Evidence IEA];
                     GO_function: GO:0032555 - purine ribonucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HEY8522185.1"
                     /translation="INVESVIKDSQVRIWKSLKANPEFNISLNESQKILEKFMESKIK
                     LVILNIDLVGSTKMSLNLSIDRLTTIIRAFAQEMTILISMYGGYVLKYIGDAVLAFFV
                     VDTNDTNDFYDNENKAKYSNSSSNDNFDSLSYSNVISCAYTMIKVVQEGINPILNQND
                     YPDLKVRIGINFGEIAVVKYGVDMDEYNNMILKRPHLDLIGYTISIAVKMTSLAKPDH
                     IVIGEELFSLLEGKLKDTFKQLSITPDLWNYSTETTGKIYSVYENIR"
BASE COUNT          976 a          650 c          471 g         1222 t
ORIGIN      
        1 tctttgtact ttgatacgtg ctcccgtaaa gcaagcatga ccgcagctga tgatagcgac
       61 gctatatctg cacctgtata tccttctgtt tgatctgcta gtttttctat atcgacagag
      121 tcatccaaag gtttcttttt gatatgaatc tttataattt gtattcttga atcccgatct
      181 ggaggaggaa cataaagtaa tctatcaaat cttcccggcc ttaacagtgc agcatctaca
      241 atatcaggtc tgttagttgc accaataact acaacatttg ttaatatttc taatccatca
      301 agttcagtaa gtaattgact aattagtctc tcagtaacgt gagaatctcc aaaatcaccg
      361 cctcttttgg gagctatagc gtctatttca tcaaaaaata tgatgcatgg tgctgcttgc
      421 ctagcttttc taaatatttc tctaactcct ttttcagatt ctccaaccca ttttgataag
      481 agctcaggtc cttttatgct aataaagttg gcttcacttt catttgctgc agcttttgcc
      541 atcaaggttt tgcctgttcc tggtggccca tataatagga tccccttagg aggcaccgca
      601 tctgcgaatg taaatattcc ttgatattta agcggccatt ctaccgcttc ttgcatctct
      661 tgctttatgg attccaatcc tccaatatca tcccaactaa tgtcaggtat ctcaacaaat
      721 acttccctca ttgcagatgg ctccatttct ttaataacat ccataaagtc attcatagtg
      781 actattatct tacgcagagt atcactaggt atactttcag atgacaagtc aatatttgga
      841 agtattcgtc tcagggatct cattccggct tcttttgaga gagattgtag atctgctcct
      901 acaaatccat gagaaatatc cgctagtttt tctagattaa catcttttgc aaggggcatt
      961 cctcttgtat gaatttgcaa tatctcaagt ctaccttctc tatctgggac accaatttct
     1021 aattccctat caaatctacc tggacgtctt agtgctgggt cgatagcatt aactctattg
     1081 gtagcaccta ttactacgac tttacctctg gactttaatc catccattaa agataacagc
     1141 tgagcaacta ttcttctttc aacctctcct gatacttctt ctcgctttgg agctattgaa
     1201 tcaatctcat ctatgaaaat aatagaggga gcattcttct ctgcttgttc gaatacattt
     1261 cttaattttt cctcagattc tccatagtat ttactcatta tttcaggtcc gccaatagaa
     1321 tagaaattag cgtttgtctc atttgcaact gctcttgcaa gcaaggtttt accggtacct
     1381 ggaggaccat gtaataaaac accttttgga gcttcaactc ctaatctttt gaataactca
     1441 ggatgtctca gaggaagctc gatcatttct cgaacacgag caatctcatt tcggatacca
     1501 ccaatatctt catatgtaat agatggaact tttccttctt gagaagcttg tactgccttt
     1561 gcactatcct cagaaactgt aacttttgta gcatcattaa taattattgg tccagatgga
     1621 tccgttgata ttactacaag atctatcctt tgacccatga cgtttaaagg gattatatcg
     1681 cctttagtca tcagttgtcc atttaaagac tctgcgagat attgttcagc acctattatt
     1741 cgaagtggtt ctgtgggagc aaaggtgata cttttagcat cctttgattc aactttttta
     1801 acttctatag tatcaccaat acctacatcg agtttatttc ttgtataacc atcaatacga
     1861 actaaactag tacccctgtc tttatcccgt cctggccaac tcaataaaac tgcgttgttt
     1921 ccaaatgaag ataattctag cgcatctccg gtcataacat ttagacttct agctgcatct
     1981 ggatcaatac gaacaatttt tcttcctata tcccgttgtt ctgcttctgc aacttttagg
     2041 gttgctttac catttccttt attgttagaa gattttttgt tatcattatt atcaatacta
     2101 tcaaatgaca ttttgttaat atttataaga acttactatt atttattgat tgttttactg
     2161 tacttgtaga ttttacctgt attagaatat attaagtact tgttgcaaaa ggaattcaaa
     2221 gtttaattat ttgtctcaat aatactccat tttttatctt caaatgtgat tgttctcagt
     2281 ttattataaa ataatttact attgtagcat gtataatgag ttattatagt ttctattcta
     2341 aaaagcttca ataaatgagg aagaagtata ttattgtaat agattattaa cacatttaaa
     2401 tttaatattt tattatttga ctttaactag ataaaatata ttttagcaaa attcaaaata
     2461 tataattaaa ttattgtatc gaaattgaca agttgaaatg aattgggtgc aaaatactat
     2521 ttatcttata ttctcatata cactatatat tttccctgta gtttctgttg aataattcca
     2581 tagatcagga gtaattgata attgtttaaa agtatctttt agtttgccct ctaacaaact
     2641 aaataattct tcaccaatga caatatgatc gggtttggct agtgaagtca tcttcactgc
     2701 tatactaata gtatatccta taaggtccag atggggtctt ttcagtatca tattattata
     2761 ttcatccata tccacaccat actttactac tgcaatctct ccaaaattga ttcctatcct
     2821 tacttttaag tcagggtaat cattctgatt taaaattgga tttatacctt cttgaactac
     2881 cttaatcata gtataggcac agcttattac attgctgtag gaaagagaat caaaattgtc
     2941 attactacta ctattactat atttagcctt gttctcatta tcatagaaat cgttagtgtc
     3001 atttgtgtcc acaacaaaaa atgctaacac tgcatctcca atatacttta aaacatatcc
     3061 tccatacata gatattagta tggtcatttc ttgagcaaat gctctaatta ttgttgttag
     3121 tctatcaatg gacaaattca aagacatttt tgtagaacct accaagtcaa tatttaaaat
     3181 taccagcttt atttttgatt ccataaactt ttccaatatc ttttgagatt cattgagaga
     3241 aatattaaac tcaggatttg ctttcaaaga tttccatatt ctaacttgtg aatcctttat
     3301 caccgactca acattaata
//
LOCUS       DATCMF010000026         1664 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_136280, whole genome shotgun sequence.
ACCESSION   DATCMF010000026 DATCMF010000000
VERSION     DATCMF010000026.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1664)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1664)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1664
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_136280"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..340)
                     /locus_tag="VIL14_00345"
     CDS             complement(<1..340)
                     /locus_tag="VIL14_00345"
                     /inference="COORDINATES: protein motif:HMM:NF012451.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ domain-containing protein"
                     /protein_id="HEY8522186.1"
                     /translation="MDVKGYYAIMEVSEQANYREIRAAYRRLAKKYHPDVSGSLYAEE
                     TIKTINAAFEVLSDKEKRREYDRMVFDNSDTLQQRGHQKENENDVKNTNPQSSNKSGN
                     KDSRDRRSTYR"
     gene            511..837
                     /locus_tag="VIL14_00350"
     CDS             511..837
                     /locus_tag="VIL14_00350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522187.1"
                     /translation="MHSKKDVRRINHREDYEKNGFEGVMNDLNKDKEEALDYVPDIHT
                     EQVPKNGHTTRELLLGESKNDAGTNNHDTILEENVNDKDKNNDIPAKMSKFGKGFVIP
                     DDKNSS"
     gene            complement(864..>1664)
                     /locus_tag="VIL14_00355"
     CDS             complement(864..>1664)
                     /locus_tag="VIL14_00355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEY8522188.1"
                     /translation="AGIVFTGSKEVGYRMIKQSSNLNPRPIIAEMGGKNPVIVTENAN
                     IEKAVNGIVRAAFGYSGQKCSACSRLYVSRKVKPVFIDKLVQSTKSLSIGNPIEPTVF
                     LGPLINQKAYEKYQKLIKIASRDGRILIGGKVKNNGEFKYGYYVEPTIVDGLPRNHCF
                     FKEELFVPILCVDQYDEFKEALSLCNDSEYGLTAGIYSDKKEEIESFLEDIEAGVVYV
                     NRSSATTGAMVGCQSFGGWKASGTTQKGTGGPYYITQYLQEQSQTIVE"
BASE COUNT          509 a          335 c          281 g          539 t
ORIGIN      
        1 tacggtaagt gcttctccta tctctgctat ctttattccc tgatttattt gacgattgag
       61 gatttgtgtt ttttacgtca ttttcattct ccttttggtg tcctcgttgt tgtaaggtat
      121 cgctattatc aaagaccatc ctatcatact ctcttctttt ttctttatct gaaagaactt
      181 caaaggcagc attaatggtc tttatcgttt cttcagcata caaggaacca cttacatcag
      241 gatgatactt cttggctaga cgtctgtacg cggctctaat ctccctatag tttgcttgtt
      301 ctgatacttc cataatagca taatagcctt taacatccaa tacaagaaat acgtcaaatg
      361 ctacttatta gggttcagat ctttgacaaa ctgttccaac ttaaggatca ggaaaagcgc
      421 taacatcccg attggaacca ctagagattg caatccagat aaatctactt aaatggtatt
      481 tagttatcat gatacgcgga tagaaaaata atgcacagca aaaaggatgt acgaagaata
      541 aatcatagag aggattacga gaaaaatgga tttgaaggag taatgaatga tctaaataaa
      601 gataaggaag aagcgttgga ctatgtaccc gatatacata cagaacaggt cccgaaaaat
      661 ggtcacacga caagagaact attattagga gaaagcaaaa atgatgcagg cacgaacaat
      721 catgatacta ttcttgagga aaatgtaaac gataaggata aaaataatga cataccggca
      781 aagatgagca aatttggcaa aggatttgta attcctgatg ataaaaatag tagctaacaa
      841 atataacctg atactcggga ttattactct acaatagtct gactctgctc ttgcagatat
      901 tgtgttatat aatatggtcc tccggttcct ttttgtgttg tacccgaagc cttccaacca
      961 ccaaaagatt gacagcccac catagctcct gttgtagcac tagatctgtt aacatataca
     1021 acccctgctt caatatcctc tagaaaactt tcaatctctt cttttttatc gctgtagata
     1081 ccagctgtca atccgtactc tgaatcatta cacaaactta acgcttcttt gaattcatcg
     1141 tattggtcta cacacagtat aggcacgaat agttcttctt tgaaaaagca gtggtttcta
     1201 ggcaaaccat caacaattgt aggctctaca taataaccat acttaaattc accattattc
     1261 ttgactttgc cacctatgag tatcctgccg tctctagatg cgattttgat taatttctga
     1321 tatttttcat aagccttttg attaataagt gggcccagaa aaacagttgg ttcaattgga
     1381 tttccgatgg acaagctttt ggtactctga actaatttat ctataaacac aggtttgact
     1441 tttctgctga catataggcg tgaacatgcg ctgcattttt gtcccgaata tccaaatgct
     1501 gctctcacaa taccatttac ggccttttcg atattggcgt tttccgttac tattaccggg
     1561 tttttaccac ccatttctgc aataattggt cttggattta gattgctaga ttgtttaatc
     1621 attctgtatc ctacttcctt cgatccagta aacactattc cagc
//
LOCUS       DATCMF010000027         1952 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_68657, whole genome shotgun sequence.
ACCESSION   DATCMF010000027 DATCMF010000000
VERSION     DATCMF010000027.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1952)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1952)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1952
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_68657"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..767)
                     /locus_tag="VIL14_00360"
     CDS             complement(<1..767)
                     /locus_tag="VIL14_00360"
                     /EC_number="4.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_function: GO:0016849 - phosphorus-oxygen lyase activity
                     [Evidence IEA];
                     GO_function: GO:0032555 - purine ribonucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HEY8522189.1"
                     /translation="MNSDKSFFKEKELDFVELLSSSSASSTNTNENQSFVKDHLFYYE
                     DKYTSDKDKSILNKNDNFSQITDIQTYIAETEKRVLEAFEKGSRLSPRIERSDQFLQQ
                     HAGSKLKLVVLYVDLVDSTLMTRDFSVDKLATIIQMFTQEMSVAATNFNGQVLKYVGD
                     AVIAYFPIEVNDSISCNSAINCAFHMITIIEQGINPVLRRNNCDQIQVKIGIDASEHS
                     IIQYVLGEKSYIDILGYGISMSAKLIKLAQPNQIITS"
     gene            999..1841
                     /locus_tag="VIL14_00365"
     CDS             999..1841
                     /locus_tag="VIL14_00365"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase"
                     /protein_id="HEY8522190.1"
                     /translation="MEYAYPNVLVSTQWINDRLDDPKIRIVEVDYIPATSYILGHIPG
                     AVLFDWKKDVIDSRKRDVISKEDLEELLQRIGVNNDTTIIVYGDFKNWFATFAFWIFK
                     YYGVQDVRLMNGSRKKWLEEDRPISLDTPSYPRGNFKASDPDKSIRVFMNYVKDVIGT
                     KDKILVDVRTNDEYNGKTLAPTEYSTEYGQMGGHIPGAVNVPWNKMVNENGTLKSAEE
                     LKKLYESLNVTPDKEVITYCGIGERAAYTWFVLKYLLGYPNVKSYDGSWLEWGNTMGN
                     PIEK"
BASE COUNT          708 a          271 c          321 g          652 t
ORIGIN      
        1 tgactagtaa taatttgatt aggctgtgct aatttaatca attttgctga catgcttatg
       61 ccatatccca agatatcgat atatgatttt tcacctaata catattgaat aattgaatgt
      121 tcacttgcat caattcctat ctttacttgt atctgatcac aattatttct tctcaggaca
      181 ggattgattc cctgctcaat aatggtaatc atatgaaacg cacaatttat tgcagaatta
      241 caggagatag aatcgtttac ttcaatagga aaataggcta ttacagcatc cccaacatat
      301 ttcagtacct gtccattaaa atttgtagct gcaacggaca tttcctgtgt aaacatctgt
      361 attattgtag ctaacttgtc aactgaaaaa tctcttgtca tcaatgtaga atcaaccaaa
      421 tctacataca gtacaacaag tttcagttta gaacctgcat gttgttgcag aaactgatca
      481 gacctttcta ttcttggaga aagtcttgag cctttttcaa aagcctccaa aactcttttt
      541 tcagtctctg caatgtatgt ttgaatatct gttatttggg aaaaattatc atttttattc
      601 aaaatggatt tgtctttatc tgatgtatat ttatcttcat aatagaatag gtgatctttt
      661 acaaaagatt gattttcatt tgtatttgta gatgatgcgg atgatgatga caataactct
      721 acaaaatcca attccttttc cttaaaaaaa gatttatcag aattcaagac agaaaacttc
      781 aagtttctat gatttataag aaatcgatac ttacataaaa agtcaactta tttttaaaac
      841 caatatatca taaagaagaa acaatgttat agataaacat aatgaaacaa gaaatttaca
      901 aataatattc tattatgata ttataatagt aatagatttt ctagaaacaa ttaaagagtt
      961 gaatattgta gaagatatac ggaaattagt gcattataat ggagtatgct tatcctaatg
     1021 tcttagttag tacgcaatgg ataaatgatc gtttagatga tccaaaaata cgaattgttg
     1081 aggttgacta tattcctgct acaagctata ttctcggcca tattcctgga gctgtattgt
     1141 ttgactggaa gaaagatgta attgattcaa gaaagagaga tgtaatctca aaagaggatc
     1201 ttgaagaatt attacaacga ataggtgtaa acaatgatac tacaataata gtttatggtg
     1261 attttaaaaa ttggtttgca acatttgctt tctggatttt caaatattat ggagttcaag
     1321 atgtcagatt aatgaatggc tctagaaaga aatggttgga ggaagatcgt ccaatcagct
     1381 tagatactcc atcttatcca agagggaact tcaaagcctc tgatccagat aaaagtataa
     1441 gggtttttat gaattatgta aaagatgtaa taggtactaa agataagata ctagttgatg
     1501 ttagaactaa tgatgaatat aatgggaaaa cacttgctcc aacagaatat tctaccgaat
     1561 atggtcaaat ggggggacac attccgggtg cagtaaatgt accttggaat aagatggtta
     1621 atgaaaatgg tactctcaag tcagcagaag aattgaagaa actttatgaa tcattaaatg
     1681 ttacacccga taaagaagta ataacatatt gcgggattgg tgaaagagct gcgtatactt
     1741 ggtttgttct gaaatatctt cttggttacc ctaacgtaaa gagttacgat ggttcatggc
     1801 tagaatgggg taatactatg ggcaatccta ttgaaaaata aaatatatat tttaaaatta
     1861 taaggattct catattacca aataatagta ctaaaaaaat tccttttcaa atattgaact
     1921 aaaataatat tttgtaattt taaaaaataa aa
//
LOCUS       DATCMF010000028         3074 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_68821, whole genome shotgun sequence.
ACCESSION   DATCMF010000028 DATCMF010000000
VERSION     DATCMF010000028.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3074)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3074)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3074
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_68821"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            440..>3074
                     /locus_tag="VIL14_00370"
     CDS             440..>3074
                     /locus_tag="VIL14_00370"
                     /inference="COORDINATES: protein motif:HMM:NF024867.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003682 - chromatin binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0007076 - mitotic chromosome condensation
                     [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome segregation SMC family protein"
                     /protein_id="HEY8522191.1"
                     /translation="MVFIKKVEIYGFKSFGFKNTVINFNNGLIAVTGPNGSGKSNVLD
                     AIMFALGENSPKALRVDKFQSLFHDTQNKSHKLVRVSITFDNQNRGIPIDSDNVTLTR
                     EMEGSVGESQYHLNGKKVTKSTIIELLQIVVAVPNKLNIVQQGMITRISELNAEERRK
                     IIEDIVGLSYFDEKKEESLKQLEESDRRLDIALARMNEIRKRIDDLEVERNEQLRFQH
                     LERDIKKYKAIKISNESRNIKHNIMINEQTVETKKIQYNKVGGELKKTKQELENIDLE
                     KMKFIKEIDLVNKEKAEISNKVSSIVYDVEKSKAIYQETISRIEEIDKKIASAERARI
                     ELNVKVQELHNEITILEINSGPIKERKVGYTSELKNLDNHISHLSSKNQKIEFYKSKI
                     NHRYEKIIVMNNKFEVDILKIKENLKIILNNKIETNSKLKNLRYKILLISQELQNNVT
                     NMVKLKQKIENLPQLILGIEKKITEFNNEIEESKSIVNKSDTESLRFYEKNKILTEAM
                     SEDLTISEIQKEKELHIVGIVHDLITWDKNYLRPIMAVGSEWLKAIVVNNVEDMVKIA
                     QFAKVKKLPRVKIIPLDIIQLSEKVVVYEENMSFIGNLSNFIESDYKKLVDFIFGNII
                     VVRTAREAYKLSLKGYRSVSIDGEFFEAKSNILLVDYNSAVINFVTEINLKNDIESLR
                     MLIVKLKNSLLEKTTDLRNLIDRLKNLQFEKIELENNIRYLEDKLIFQRNVLKEHNAE
                     VKELELLRTKNESDYKNTVNLLQTNRKRFSLISATKKKIEEDLKKINLGFEETKIANL
                     NLERNKFQSMLESDNQKLQNIVIHLSKKKNERDLLLERINSLNDEKTILIKEQSDKEI
                     LKTELQLNIEKEEQELKFLRNK"
BASE COUNT         1354 a          344 c          478 g          898 t
ORIGIN      
        1 aatatttaat gacgatgtaa aactattcct tttactatac gactaatttt tctcatcatt
       61 atttttaaca tgatatttaa atgtaattaa atagttagaa gaaaatgttt ttgaacatct
      121 catctaacgt aatttttaga attcttatac ataataaaaa agattaagct aaaaaatcaa
      181 cataaatagc ctatctttcg tgattaaatt gattatattt cactaaatgg atatacattt
      241 ttgaatgaaa attcctcaaa ctaatttaga aaatcttaaa taaacataag aaaacttaag
      301 tgaagatatt cttttagaaa attaccagcc aaaaattttc tgtatcattt ccattttata
      361 tgagagagga atgaataaat ccttcatctt aaatttaaga aaaaatataa tatagaatca
      421 gcttgttact ttagtcagga tggtttttat taaaaaggta gaaatttatg gttttaaatc
      481 atttggcttt aaaaataccg taattaactt taacaatgga cttatagccg ttacaggtcc
      541 aaatggttca ggaaaaagta atgtattaga cgcaattatg tttgcactgg gtgaaaatag
      601 tccaaaagct ttacgtgtcg ataagttcca atctcttttt catgataccc aaaataaatc
      661 acacaaattg gttcgcgtaa gtattacttt tgacaatcaa aatagaggaa ttcctattga
      721 ttctgataac gtaactttaa cgagggaaat ggaaggttct gttggggaaa gtcagtacca
      781 tttaaatgga aaaaaagtaa caaaatctac aattattgaa ttattacaaa ttgtagttgc
      841 agttcctaat aaattaaata ttgtacaaca aggaatgatt acaaggatat cagagttaaa
      901 tgctgaagaa aggcgaaaga ttatagagga tattgtaggc ctatcctatt ttgatgaaaa
      961 aaaagaagaa tcattgaaac aattagaaga gtctgataga agacttgata ttgcgctcgc
     1021 gcgtatgaat gaaatacgaa aaagaattga tgatttagaa gttgagagaa atgaacaatt
     1081 aagatttcag catctagaga gagatatcaa aaaatacaaa gcaatcaaaa tttcaaatga
     1141 aagtagaaat atcaaacata atattatgat taatgaacaa accgtagaaa caaaaaaaat
     1201 ccaatataat aaagttggcg gagagctaaa aaaaacaaaa caagaattag aaaatataga
     1261 tttagagaaa atgaagttta ttaaagaaat agatctggtc aataaagaaa aagctgagat
     1321 cagtaacaag gtatcctcaa tagtatatga tgtagaaaaa tcaaaggcga tttaccaaga
     1381 aacaatttca agaatagagg aaattgataa aaaaatagca agtgcagaga gagcaagaat
     1441 agaattaaat gtaaaagttc aggaattgca caatgaaata acaattttag aaataaatag
     1501 tggacctata aaggaacgaa aagtcggtta tacatcagag ttaaaaaatt tagataacca
     1561 tatttcacat ttatccagta aaaaccagaa aatagaattt tataaaagca agataaatca
     1621 tagatacgaa aaaatcattg tcatgaacaa taaatttgaa gttgatattc taaaaataaa
     1681 ggaaaatctg aaaattattt taaacaacaa aattgaaaca aattctaaac tcaagaactt
     1741 gaggtataag atattattga tttcccaaga attacagaat aatgttacca atatggtgaa
     1801 attaaaacaa aagatagaaa acctacctca attaatatta ggaatagaga aaaaaataac
     1861 ggaatttaat aatgaaatag aagaatcgaa aagtatagtg aataagtctg atactgaatc
     1921 attgagattt tatgaaaaaa ataaaatttt aactgaagcc atgtctgagg atttaactat
     1981 ttcggaaata cagaaggaaa aagaattaca tattgtagga atcgtccatg atttaatcac
     2041 atgggataaa aattatctta gacccataat ggccgtagga tctgaatggt tgaaggccat
     2101 agttgttaat aacgtagaag atatggttaa gatagcacaa tttgctaaag tgaagaaact
     2161 gcctagagta aagataattc ctttagacat catccaactt tcagaaaaag ttgttgtata
     2221 tgaagaaaat atgtccttta taggtaactt gtcaaacttt attgagtctg attataaaaa
     2281 attggttgat tttatttttg gaaatatcat tgttgttagg acggcacggg aagcctacaa
     2341 gctatcatta aaaggatata gatcagtatc aattgatgga gaattttttg aggcaaaatc
     2401 aaatatactt ttagtggatt ataattctgc cgttattaac tttgttactg aaattaatct
     2461 taaaaacgat attgaaagtt tacgcatgct aatagtaaaa ttaaaaaact cactgttaga
     2521 aaagacaacc gacctacgaa atcttataga tagattaaaa aacttacagt ttgaaaaaat
     2581 agaattagaa aacaatataa gatatcttga agataaactt atttttcaaa gaaatgtatt
     2641 aaaggaacac aatgcagagg tgaaggaatt agagctttta cgaactaaga atgaaagtga
     2701 ttataaaaat acagtaaatt tactacaaac aaatagaaaa agattttctt taatatctgc
     2761 gactaaaaaa aaaatcgaag aagatttgaa gaaaataaac cttggttttg aagaaacaaa
     2821 aatcgctaat ttaaatttag aaagaaacaa atttcaaagt atgctcgaat ccgataatca
     2881 gaaactacaa aatattgtga ttcacctttc gaagaaaaaa aatgaaagag atttactttt
     2941 agaaagaatt aactcattaa atgatgaaaa gacaatcttg ataaaagaac aatctgacaa
     3001 agagatttta aagacagaat tacaacttaa tatagaaaaa gaagaacaag agttaaaatt
     3061 tttacgaaat aaag
//
LOCUS       DATCMF010000029         2703 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_4032, whole genome shotgun sequence.
ACCESSION   DATCMF010000029 DATCMF010000000
VERSION     DATCMF010000029.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2703)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2703)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2703
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4032"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..883
                     /locus_tag="VIL14_00375"
     CDS             <1..883
                     /locus_tag="VIL14_00375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="iron-containing alcohol dehydrogenase"
                     /protein_id="HEY8522192.1"
                     /translation="KKSLVITTTTPDIYNKWIDYMGITDYELYDKASPDPAIETVEQI
                     QKEYEGREISSYIGLGGGSSMDLCKYLSKLTGIPKILIPTTFGTGAEMTTYAVISFEH
                     KKKLLQDEAFLADAAIVDPYFLPGTPFNIMRNSACDAAAQASEGYDSKLSNPFTKLFC
                     KEAFEILEDAIINDKPDLLPYGAMLSGIGFGNSSTTLGHALSYVFSNEGVPHGYSLSS
                     CTTVAHKFNESIFYERFKKICQKLKFEPLKLKQSLEEAADVILPDRGHLDNNPREVTR
                     ADIIKCLDEIVNSNPLA"
     gene            1034..1633
                     /locus_tag="VIL14_00380"
     CDS             1034..1633
                     /locus_tag="VIL14_00380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HEY8522193.1"
                     /translation="MTTISKSMTINSPVSEVFTYFARPEHMADQFPENMGLNIIPIEV
                     KNGFGVGTIFRISGDFDGKRLEWDCETIDYIPHRKIVAKMIEGPFKKWQIEVEFEEIN
                     EKLTKTGITVDYDMPMGPLGSFIDKVKLKKIAERGIENGLYRVKALLEGTGSIPVYIT
                     LDAYRQILKEKERLNCSVSDTILRMFQNQKEEPTAPSTS"
     gene            1890..2024
                     /locus_tag="VIL14_00385"
     CDS             1890..2024
                     /locus_tag="VIL14_00385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522194.1"
                     /translation="MQDIHHISESGENNLVKQNYEVPPNSDSSTIRKRTVQELQKQYD
                     "
     gene            2432..2521
                     /locus_tag="VIL14_00390"
     tRNA            join(2432..2474,2491..2521)
                     /locus_tag="VIL14_00390"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2466..2468,aa:Lys,seq:ctt)
BASE COUNT          950 a          412 c          460 g          881 t
ORIGIN      
        1 aaaaaaatct ttagtaatta ctacaacaac gccagatatt tataacaaat ggattgatta
       61 tatgggaata acagattatg aactttatga taaagcaagt cctgatcctg ctatagaaac
      121 agttgaacaa attcaaaagg agtatgaagg cagggaaatt tcttcatata tcggcttggg
      181 tggaggtagt tcaatggatt tatgtaaata tctaagcaaa ttgacgggta tccctaagat
      241 ccttattcca acaacctttg gaacgggagc agaaatgaca acctatgctg taattagttt
      301 tgagcacaag aaaaaattgt tacaagacga agcttttttg gctgatgcag ctattgttga
      361 tccatacttt ctaccaggta caccatttaa tatcatgagg aattctgcat gtgatgcagc
      421 ggctcaagca tcagagggtt atgacagtaa acttagtaat ccatttacta aattattttg
      481 taaggaagct tttgaaattt tggaagatgc tataataaac gataaacctg atctgctgcc
      541 ttatggtgcc atgttgtcgg gaattggttt tgggaattcc tcgaccacac tcggccatgc
      601 tctttcttat gtattttcta atgaaggtgt tcctcatggc tactcattat catcttgtac
      661 tactgtagca cataaattta atgaatccat tttttatgaa aggtttaaga agatttgtca
      721 gaaattaaag tttgaacctc tgaaattgaa acaatcatta gaggaagcag cagacgtaat
      781 tctgcctgac agaggccatt tagataacaa tccacgagag gtcactagag ctgatattat
      841 caagtgtttg gacgaaatag tgaactcgaa tcccctcgcc taaactagat gatggtaaaa
      901 aaatattttt tcatttttaa tgtaaaagtt tgtagtaatt ctgtggtatt attctgaatg
      961 tgtttttcaa tttattgatt agtttaagaa acctttaaat tcactttact aaatatcacc
     1021 ataagatagg ataatgacta ccatcagtaa gtctatgaca attaactctc ctgttagcga
     1081 agtttttact tattttgcaa gacctgaaca tatggctgat caatttccag aaaatatggg
     1141 tcttaatatt attccaattg aggtgaaaaa tggttttggt gtagggacta tttttcgaat
     1201 aagtggagat ttcgatggaa aaagattaga atgggattgt gaaactattg attacattcc
     1261 tcatagaaaa attgtagcaa aaatgattga aggacctttc aaaaaatggc agatagaagt
     1321 agaatttgaa gaaataaatg aaaaattaac caagactggg attactgtag attatgatat
     1381 gccaatggga ccattaggaa gttttattga caaggtaaag ctaaagaaaa ttgctgaaag
     1441 aggaattgaa aatggacttt atagagttaa agctttactg gaaggaactg gttctattcc
     1501 tgtatatata accttagatg catataggca gattttaaag gaaaaggaaa gattaaactg
     1561 ttcggtttca gatactatcc tcagaatgtt tcagaaccaa aaagaagaac ccactgcgcc
     1621 ctctacttct tgaccagaag aaagaactaa gcttcaatcc cttttttaag ctctactctt
     1681 tttagataca aatctttcgt ttattggaaa ttaatttcca aactttatcg atccttatta
     1741 tttctataat gagttatttt gagttacttg agtaactcat taattatttt tcttatttaa
     1801 aggctaaaga ttatacttat tataggaaaa agaaagtttg caacctatgt aaaaagaggt
     1861 ttacccggca atggaatctg gagagacata tgcaggatat tcatcacatc tctgaatctg
     1921 gcgaaaataa tttggttaaa caaaactatg aagttcctcc taattcagat tcttccacaa
     1981 ttaggaaaag aacagttcag gaattgcaaa aacaatacga ctgaaatgga ttactatgaa
     2041 aatccttctg aatatcacaa ttttacaaaa cattcttcta gtaatgattt ttataacaat
     2101 aggttttatg acattttgaa cctgttctaa tagacaaaaa ggagtacaag ttaacaatac
     2161 gagataagat aagaatacga cgggccttac aaattaagaa actttctcca acaaatttat
     2221 cctaattatg ttgttatacc gcagatctgt tggttaaatt atctctgcta tactcaaaat
     2281 agtattcaac cattaagaga tttttataaa aaatacaatt taatgaatct ttggcaatta
     2341 tactgaccta gctactatca cggcaatttt tatttaagtc atttatttaa tgaaaaagaa
     2401 tttattttct tgaaaatgaa atataaaaag agggttcgta gctcagccag gtagagcgtc
     2461 tggctcttaa ccagtctaca ttagggttaa aatgtcgtgg gtccgaatcc caccgaaccc
     2521 gtgtgaaatt atacactaat atagtacatt tcaattttat ctaaattagg aaaattcatc
     2581 atttttgaaa attcttcatc tgtaatgttg ttcctaattt tgcttacaaa tttcccagtc
     2641 aattttccaa tatcttcaca atcatctatc aaaaaatggt aaaaactttt tccctggaaa
     2701 aat
//
LOCUS       DATCMF010000030         1542 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_333825, whole genome shotgun sequence.
ACCESSION   DATCMF010000030 DATCMF010000000
VERSION     DATCMF010000030.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1542)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1542)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1542
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_333825"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            443..>1542
                     /locus_tag="VIL14_00395"
     CDS             443..>1542
                     /locus_tag="VIL14_00395"
                     /inference="COORDINATES: protein motif:HMM:NF012722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HEY8522195.1"
                     /translation="MSSIEIKRKMMKLYRGELLNEVYSTFLKLVTKTRIVVEEKEEEE
                     EGIRSSSKIEIIRNPRESIKLAYELIQSAKQEVLRIFPSIHAFRRQARMGIMHLFKEV
                     VEHGVKVRILIHADENQIRQVINEVVLVFPEIDIKGIDMSLNTSIGIVIVDKKESLII
                     ETRDDARDNSYDASGLAAYSNSKYIALSYASIFESLWIQAELYKQLKEANEQLKQHDK
                     MQKEFINLAAHELRTPIQPILGLTEIVSSKIKNNTEQRELLDAVTRNAKRLQRLVDDI
                     IDVTKIEGRSLKLNKEELDLNHVITNIIDDYNTLIVSGNHKVKLYFNPFKETLLIKAD
                     KERISEVMSNLLSNAIKFTKEDAIFISIEKRV"
BASE COUNT          617 a          195 c          254 g          476 t
ORIGIN      
        1 atgatgaatt aactcaaatt tatagaagat tttctaaata aagataaata ttaatcaaat
       61 cgaaacatac aaaaatattt ttgatagata acttaacatt tgacaaatct atcatttatc
      121 ttatatataa taattaaaca atgttatgtt tttagcatta ttactttcca attgattagt
      181 tttgttagga agaactttat attcatcaat ttataatact atttagttta tgttagaata
      241 tctaaaccaa atcatatact caatccttgg ctctacaatg agttacattt ctcttggatc
      301 agcattgtat tttacagtat gtatccttaa tgatgatatt acaataaagc cttgtatgta
      361 tattcaagtc gggaaaaata gcaattgtaa acagcaagct tagagatgaa gaaaaaaaag
      421 atgatgattc tgcaataata tgatgtcaag catcgaaata aaaagaaaaa tgatgaaatt
      481 atatagagga gagctactaa atgaagtata ttctacgttc cttaaattag ttactaaaac
      541 aagaatagta gtagaagaaa aggaagaaga ggaggaagga attagatcat catctaaaat
      601 agagattatt cggaatccca gagaatcaat aaagctagca tatgaactaa tacaatcagc
      661 aaaacaagaa gtactaagaa tatttccttc aattcatgca tttcgccgtc aagcacgtat
      721 gggtataatg catctattta aggaagtagt agaacatggt gtaaaggtta gaatattaat
      781 ccatgctgat gagaaccaaa ttagacaggt aataaatgaa gtagtgttgg ttttccctga
      841 gatagacatt aagggtattg atatgagctt gaatacaagc attggaattg taattgttga
      901 taaaaaagaa tctctaatta tagaaacaag ggatgatgca agggataatt cttatgatgc
      961 atcaggattg gctgcctatt ctaatagcaa gtatattgct ttatcatatg cttctatatt
     1021 tgaaagtctt tggatacaag cagaattgta taagcaactt aaagaagcaa atgaacagct
     1081 aaagcagcat gacaaaatgc aaaaggagtt cattaattta gcagctcatg aactccgtac
     1141 tcccattcaa ccaatactcg gcttaactga aattgtttcc tcgaaaataa aaaataatac
     1201 tgaacaacgt gaattactag atgctgtcac tagaaatgca aagcgattgc agcgactggt
     1261 agatgatata atagatgtta caaaaattga aggtcggtca ctaaaactaa acaaagaaga
     1321 attggattta aatcatgtga tcacaaatat tatagatgat tataatactc ttattgtaag
     1381 tggcaatcat aaggtcaagt tatattttaa tccatttaaa gagactttgt taataaaagc
     1441 tgataaagaa agaatttctg aagtaatgtc taaccttcta agtaatgcta ttaaatttac
     1501 taaagaagat gcaatattta tttccattga aaagagagta ga
//
LOCUS       DATCMF010000031         1609 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_600299, whole genome shotgun sequence.
ACCESSION   DATCMF010000031 DATCMF010000000
VERSION     DATCMF010000031.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1609)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1609)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1609
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_600299"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..595
                     /locus_tag="VIL14_00400"
     CDS             <1..595
                     /locus_tag="VIL14_00400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522196.1"
                     /translation="IPTETFSNNYTLQIGNQTLQLDYYGNNHSPGNIFIYAPKQKVLM
                     LVDIIFPGWVPFPYLAVSKDIAGYIKAHDIVLNNYNFDTFVGGHLTRLGTINDVIVQK
                     EFISDLEKAAGKSNNEILFSETAKQVGIFDNPWLIFSRYIDAVNNKCVQDMLPKWENK
                     LGGARDVMSTLCFAMSQAGRIDPTTQALLQNSTFVYK"
     gene            complement(737..1516)
                     /locus_tag="VIL14_00405"
     CDS             complement(737..1516)
                     /locus_tag="VIL14_00405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY8522197.1"
                     /translation="MVINAFILLTIKKIKNNLSFTLSTFTTIMQPILWLSIFLYLREE
                     QITLSIYNNQIRYIDFLVLGIFLWRIVSFILGKFPSSIKEDVSAIRSIITSPGGEMIL
                     IWSSFVATFFIALIIGTAILLTAVLLYDFSVFFNQIIIASLVFLLIIIIHFEIASIIV
                     ISHIHIKDMKSIGFITTTIFGLSAGVFFPVELFPPPFDNIAYVLPLTQGLTIMREMLL
                     FPNFLPNMNLLIALLMETIILFITTIILYKKNFKSYWFETL"
BASE COUNT          592 a          233 c          236 g          548 t
ORIGIN      
        1 aatacctact gaaacattct caaataatta tactttgcag attggaaacc aaactcttca
       61 actagactat tatggaaata accactcgcc tggaaacata ttcatctatg ctccaaaaca
      121 aaaggtgctt atgctagttg atataatatt tccaggctgg gtaccatttc catatcttgc
      181 agtatctaaa gatatagcag gttatatcaa agcacacgat atagttctga acaattataa
      241 ctttgatacc tttgttgggg gacatcttac tagacttgga acaattaatg atgtaatagt
      301 acaaaaagag tttatctctg acttggaaaa ggcagcggga aaatctaaca atgaaattct
      361 ttttagtgag actgcaaaac aagtaggaat ttttgataat ccttggttaa ttttctccag
      421 atatattgat gctgtcaaca acaaatgtgt acaagatatg ttgccaaaat gggaaaataa
      481 actaggtggt gcacgagatg taatgtcgac tctttgcttc gctatgtctc aggctggaag
      541 gatagatcct actacacagg cattgttaca aaatagtacg tttgtgtaca aataacatat
      601 ctcttatttt atcttcatat tctttaacaa tatcataaaa tatattgcga tgtccaattc
      661 cttactatat gagaaataat agttcttaga atatcatcaa gttggataat aatatgatgc
      721 tatattctat ttggtatcat aatgtttcaa accaataaga tttgaaattt tttttatata
      781 aaataattgt tgttataaaa agaataattg tctccattag gagagcaatc aataaattca
      841 tattgggcaa aaagttagga aaaagtaaca tttctctcat aatggttaat ccttgagtta
      901 atggaagaac gtaagcgata ttatcaaaag gtggtggaaa aagttctaca ggaaagaaga
      961 cgccagcaga taatccaaat atggtagttg taataaatcc tatacttttc atatctttta
     1021 tatgtatatg agaaataaca ataatacttg ctatttcaaa atgaataatt attatcaaca
     1081 aaaatactag agaagcaatt ataatttgat taaagaaaac agaaaaatca tagagcaaaa
     1141 ctgcagttag taatatagct gtaccgataa tcaatgcaat aaaaaatgtg gcaacaaaac
     1201 ttgaccatat taatatcatt tctcctcctg gtgaggtgat tatacttctt attgcagaca
     1261 catcttcttt tattgaactt gggaatttcc ctaaaataaa acttactatc ctccataaga
     1321 atattcccaa tactagaaaa tcaatgtatc ttatttgatt attgtatata cttaatgtta
     1381 tttgttcctc tcttaaatat aaaaaaatac ttaaccataa tataggctgc attatagtag
     1441 taaaagtact tagagtaaat gaaagattat tttttatctt tttgatggta agtaatataa
     1501 atgcattaat gaccattaat tatttcccca attaatttat caagatttgg ttctttacta
     1561 atgattttct ttatctttaa tcctctatta cctagtgagt tgattatgg
//
LOCUS       DATCMF010000032         1546 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_136956, whole genome shotgun sequence.
ACCESSION   DATCMF010000032 DATCMF010000000
VERSION     DATCMF010000032.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1546)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1546)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1546
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_136956"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1492)
                     /locus_tag="VIL14_00410"
     CDS             complement(<1..1492)
                     /locus_tag="VIL14_00410"
                     /EC_number="1.6.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050136 - NADH dehydrogenase (quinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HEY8522198.1"
                     /translation="MVESVGFEGIAINVWLVWIVPFLGAALIPALAKKSTRFSNISAV
                     GFAIISALLAATLIPLVTSGTEIHSQIPWISALNIKAGILADPLSIIMTNLVAWISSL
                     IIIYSVGYMHGDRDLVRYWFFMLFFIGSMQLIVLSGNLLMVFFGWEGVGFASYALIGF
                     WYADRKKDYVGREGHIVKGIAMWASPTHAGIKAFLMTRAGDVMMLSGMFLIFMYAGTF
                     GFKELLADQTWAHTMMEQNLLVPAAVLLFGGAIGKSAQFPLNEWLLEAMTGPTPVSAL
                     IHAATMVKAGVFLVARIGPLFFALAAFDAAVFFEVVAWVGAITAFLLATQAIVNPEIK
                     KVLAYSTGSQIGYMMMALGIAGLSTQFVDGYTAGFFHLMSHAMFKASLFMAAGAILHV
                     VGSRFMTDMGGLRKNMNKTFIFMLLSGLSLAGAPLITSGFWSKDAIFAALLESGTSTG
                     GALFFIAFIVAIMTAFYTFRMVGMVFFGTKSKHIQAIEQSSSHTSQS"
BASE COUNT          537 a          358 c          250 g          401 t
ORIGIN      
        1 cagactgaga cgtgtgagaa gagctttgtt cgatggcctg tatatgttta ctcttagtgc
       61 cgaaaaagac catacctacc atcctgaatg tataaaatgc agtcattatt gcaactataa
      121 atgcaataaa gaaaagcgca ccccctgttg atgttcctga ttctaaaagg gccgcaaaaa
      181 tcgcatcctt actccaaaac ccagaagtta ttaaaggagc acctgctaat gaaagtccag
      241 aaagtaacat aaaaataaat gttttattca tattcttcct caatcctccc atatccgtca
      301 taaatctgga acctactaca tgtaagatcg cacccgctgc cataaacaat gatgctttaa
      361 acatcgcatg actcatgaga tggaaaaatc cagcagtata accatcaacg aattgagtag
      421 aaaggcctgc tattcccagc gccatcatca tataaccaat ttgtgaacct gtagaatatg
      481 ccaaaacctt tttgatttca ggattcacaa tggcttgagt cgcaaggaga aaggccgtta
      541 tcgctcctac ccatgcaacc acctcaaaga aaactgcagc atcaaacgcc gctaaggcaa
      601 aaaataatgg gccaatccta gcaacaagaa aaacaccagc tttaaccatt gtagctgcat
      661 gtatcaacgc agaaacaggt gtaggaccag tcatcgcttc taataaccat tcattcaaag
      721 gaaattgagc tgacttacct attgctcctc caaacagaag aacagctgca ggtaccaaaa
      781 ggttttgttc catcatagta tgagcccaag tttgatcagc taacagttct ttaaaaccaa
      841 aagtaccagc atacataaaa attaaaaaca taccagaaag catcataaca tcccctgctc
      901 gtgtcatcaa gaatgccttt attcctgcat gtgtggggga tgcccacatt gctattcctt
      961 tgacaatatg accttctctg ccaacataat ctttctttct atctgcatac caaaatccta
     1021 tcaatgcata cgaggcaaaa cctacacctt cccatccaaa aaataccatc aagagattac
     1081 ccgaaagaac aatcaattgc attgatccta taaaaaataa cataaagaac caatatcgta
     1141 ccaagtcccg gtctccatgc atgtaaccaa cagagtaaat aataattaag gatgatatcc
     1201 atgcaacaag atttgtcata ataatactaa gtgggtctgc caggatcccg gctttgatat
     1261 ttaacgcaga gatccaaggg atctggctat gaatttcagt tccggaggta actagtggaa
     1321 taagagtagc ggcaagaaga gcactgatta ttgcaaatcc aacagcacta atatttgaaa
     1381 atctggtact ttttttagct aaagcaggaa ttaatgctgc acctaaaaag gggactatcc
     1441 acacaagcca aacatttata gcaattcctt caaacccgac tgattcaacc attttttctt
     1501 ttcacctatt ctccataatt tctatacttt taacctgtgt taactg
//
LOCUS       DATCMF010000033         2212 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_69007, whole genome shotgun sequence.
ACCESSION   DATCMF010000033 DATCMF010000000
VERSION     DATCMF010000033.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2212)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2212)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2212
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_69007"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(880..1053)
                     /locus_tag="VIL14_00415"
     tRNA            complement(join(880..924,975..981,1021..1053))
                     /locus_tag="VIL14_00415"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(976..978),aa:Leu,seq:tag)
     gene            1108..>2212
                     /locus_tag="VIL14_00420"
     CDS             1108..>2212
                     /locus_tag="VIL14_00420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HEY8522199.1"
                     /translation="MTIKIEDNESNVQRRLFGTNGVRGIYGRELTLPLVIDLTYSLAT
                     YFKTGPIVVGFDGRNSSPLLSNIVSAVLNSGGLDVVMARQIPTPCLQFAAKTKKCKGG
                     IMITASHNPPEYNGIKPCADDGVEISREDEIRVEEIFYNRQFSKIDQTNKTFADQNIV
                     NEYMDNVLSLIDVEKIKSRSFKVVMDLGNGVQTMVAPYLLKKLGCQVFTLNSNIDGDF
                     PGRGPEPTVDNLKSLSNMVRDLHADFGVAYDGDGDRSLFCDEKGIIHPGDKTAAVLVK
                     YLINEKHTGAEIICPINTTLNVQLVADEGNSNIVYTKVGSVEVSREMIKRNALIGLEE
                     NGGFMYGKLNQVRDGAMTTGLILDMLANFSPPNK"
BASE COUNT          809 a          303 c          382 g          718 t
ORIGIN      
        1 tgatttttta tttgtatacc tgtgtaaaaa gagagtgggt taatttacaa taaaataaag
       61 aatctcctac attgaatatg catataaata taactttatc aacccttatt cttttaaata
      121 aaaagttctt tttctagaac atcaaaacaa tatagttttt gagaaaacaa gaatatacac
      181 cgttggtgat tggtgtgatt tgatattgaa actatcagag taatttttag tggtaaattt
      241 tttaatttaa aatgtattat taatttacaa tttttttgcc tttgtggggt taaccttaaa
      301 taattatgtt aaatataatt aaagggttga aagagacaat cgtaaatatc atgaatacca
      361 ccaaaataat tttgaaaaat acatacatct atggtattat atgctactaa gagagcttga
      421 atgtgagaaa gagaggttat taattaggta gattaggatg aaagcacaaa taaaacgcaa
      481 tataacaaac aattctaaaa caccacaaaa atcaaaaaat aaaaactttg actataacaa
      541 accaattggc aaatgtatga tttgttatac attatcaggt tggcattgtt atgactgtgg
      601 taacgactat tgtcaaagcc attttcatat ccataaagaa actaatcaat gctcataaga
      661 aatcagataa tattatcatc gtcaccgttc tatatagcat attgatggaa ttattctaat
      721 cttttctatt aaattagtta ttgagttaag tgtccatcag tattatttta attattaacc
      781 taaagaattc aaaattaaat tcatttttga aaataaatag tcaaaagatt tcataatatt
      841 atttctgcta gtattatata tatcatgata actttgtaat gcgggaggtg ggatttgaac
      901 ccacgaatcc ctaagaaaca gggttgtagg aaaaatagtt tatagccgac caatccacta
      961 ttactttctt tcattctaag catcgcactg tccctccatc tatcttagaa aagggacaga
     1021 cctgcgccgt tggcctggct tggcaacccc cgcacttgaa atacaattta taacagccaa
     1081 atttatctat tcttaaatta atgtattatg actattaaaa tagaagacaa tgaatctaat
     1141 gttcagcggc ggttatttgg aactaatggt gttagaggaa tatacggacg agaattaact
     1201 cttccattag taatagattt gacatactca ttagcaacat attttaaaac tggacccatt
     1261 gttgtaggat ttgatggaag aaattcaagt cctcttttat caaatattgt atcagctgta
     1321 ttaaattcgg gtggtttaga tgtcgtgatg gccaggcaaa tacctactcc ttgtttacaa
     1381 tttgctgcta aaacaaaaaa atgtaaaggt ggaataatga taacagcttc acataatcct
     1441 cccgaataca atggaattaa accttgtgct gatgatggtg tagagatatc aagagaagat
     1501 gaaataaggg ttgaagagat cttttataac cgtcaatttt caaaaataga tcaaactaac
     1561 aagacatttg ctgatcaaaa tatcgtaaat gagtatatgg acaatgtttt atctttaata
     1621 gatgttgaaa aaatcaaatc tagatctttt aaagtagtaa tggacttggg caatggtgtt
     1681 cagactatgg ttgcgcccta tttgctaaaa aaactaggtt gtcaggtttt tacactaaac
     1741 agtaacattg atggagattt tcccgggaga ggaccagaac caactgtaga caatttaaag
     1801 agcttatcta atatggtaag agatttacat gcagattttg gagtagcata tgatggagat
     1861 ggggatagaa gtttattctg tgatgaaaaa ggaatcattc atcccggcga taaaactgct
     1921 gctgtccttg ttaagtattt aatcaatgaa aaacataccg gtgctgagat tatatgtcct
     1981 ataaatacaa ctttgaatgt tcaattagtt gcagatgaag gaaattcaaa cattgtatat
     2041 acaaaagtag gtagtgtgga agtatctcga gaaatgatta aaagaaatgc tcttattggt
     2101 ttagaagaaa atggaggatt catgtacggt aaattaaatc aagtaaggga tggagcaatg
     2161 actacaggac tgattttgga tatgcttgca aatttttcac ctcccaataa at
//
LOCUS       DATCMF010000034         1817 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_532849, whole genome shotgun sequence.
ACCESSION   DATCMF010000034 DATCMF010000000
VERSION     DATCMF010000034.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1817)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1817)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1817
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_532849"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            22..>1817
                     /locus_tag="VIL14_00425"
     CDS             22..>1817
                     /locus_tag="VIL14_00425"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: protein motif:HMM:NF016859.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit A'/A''"
                     /protein_id="HEY8522200.1"
                     /translation="MSIMAHYVRVLPYRTFRLHPAVCPPYNADFDGDEMNLHVPQSEE
                     ARSEAALLMSVQDQLISPRYGGPIIGGIRDFITGAYILTSDESFLSKEEFFNLALLGG
                     YAGVLPEPKGEKDGTKLYTGKQLFSLFLPKDFNFIITSKWNKSIKGEGKDVVIKNGEL
                     ISGVIDKASIGAEEPDSVLHRIAKDYGNDVAQQFLNSILVMLKTFITHRGFTYGYSDL
                     WLSEDTHKEITEVITKAYDKIGELIQQYKEGTLPLTRGLSPEEALELYLVNELSRARD
                     RAGRIADRSFPNNNAGVIMASTGARGSTLNIGQMTAVLGQQSIRGKRIHKGYHNRSLP
                     HFKINDTNPDAKGFVKSNYRDGLTPLEFFFHAMGGREGLVDTAVRTQQSGYMQRRLIN
                     ALEHLKLEYDSTVRDPHGNIIQYLYGEDGIDPAKSDHGEAVNISRIIESESVVDEGTK
                     ATEEEIIHILDQNISNLNLKLKSNIENILLQNKLSKQGIEKVIKKIIDLIERAMVEPG
                     EAVGVVTAQSIGEPGTQMTLRTFHYAGVKERNVTLGLPRLIELVDARKKPITPTMDIY
                     LDEEHRISREKALSVAKEIIHTKVIDVVEKTD"
BASE COUNT          648 a          276 c          370 g          523 t
ORIGIN      
        1 cgacaacctt cattacatag aatgtcaata atggcacatt atgtcagagt tctcccttat
       61 agaactttta gacttcatcc tgctgtatgc ccaccctata atgcagattt tgacggggat
      121 gaaatgaatc tgcatgttcc acaaagcgaa gaagcaagat ctgaagctgc tttattgatg
      181 agtgttcaag atcagttgat atctccaagg tatggagggc ctataattgg aggtattcgt
      241 gacttcatta caggagctta tattttaaca agtgacgaaa gctttctctc taaggaggaa
      301 ttctttaatt tagcattatt aggaggctat gcaggggttc ttcctgagcc taaaggagag
      361 aaagatggta caaaattata tactggtaaa caactatttt ctttatttct tccaaaggac
      421 ttcaatttca ttattacttc aaaatggaat aaatctatta agggagaagg aaaagatgtt
      481 gtaattaaaa atggagaatt gattagtggt gtcatagata aagcatcaat tggcgctgaa
      541 gaacctgaca gtgttttaca ccgaatagcc aaggattatg gaaatgatgt agcacagcaa
      601 ttccttaatt ctattttagt tatgttaaaa acctttatca cccatagagg tttcacatat
      661 ggttattcag atttatggct ctccgaagat acacataaag aaattactga agtaattacg
      721 aaagcatacg ataagattgg tgagttaatt caacaataca aagaaggtac attacccttg
      781 actagaggat tatctccaga agaagcctta gaattatacc ttgtgaatga actttccaga
      841 gccagagata gagctggtag aattgctgat aggtcatttc caaataataa tgccggggtt
      901 atcatggctt ctactggtgc aagaggttcc acattaaata ttgggcaaat gacagcagtt
      961 ttaggtcaac aatctatacg agggaaaagg atccataaag gttatcataa tagatcatta
     1021 ccacatttca aaataaatga tactaatcct gatgcaaaag gttttgttaa atcaaattac
     1081 cgtgatgggc ttactcccct tgaattcttt ttccatgcaa tgggaggaag ggaaggctta
     1141 gtggacactg ctgtcagaac ccagcaatca ggatatatgc aaagaagact aatcaatgct
     1201 cttgaacatt tgaaactcga atatgatagt actgttagag accctcatgg taatattatt
     1261 caatatctat atggcgagga tggaattgat cctgcaaaaa gtgaccatgg tgaagcagtt
     1321 aatatttcaa gaataattga gagtgaatcc gtggttgatg agggaacaaa agcaacggag
     1381 gaagagatta tacatatatt agatcaaaat atttcaaatt tgaatctaaa gttaaaaagt
     1441 aatattgaaa atatattact ccaaaataaa cttagcaaac aaggaataga aaaggttatt
     1501 aaaaaaatta ttgatttgat agaaagagcc atggttgagc ctggagaggc agtaggagta
     1561 gttactgctc aatctattgg agaacctggg acacagatga ctttgagaac atttcattac
     1621 gcaggagtta aagaacgaaa tgtaacacta ggacttcccc gtttgattga gttagtagat
     1681 gcaagaaaaa agcctataac tcctaccatg gatatttact tagatgaaga acatcggatt
     1741 tctagagaaa aagccttaag tgttgcaaaa gagattatac atacgaaggt tattgatgta
     1801 gtagaaaaga cagatat
//
LOCUS       DATCMF010000035         1568 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_4678, whole genome shotgun sequence.
ACCESSION   DATCMF010000035 DATCMF010000000
VERSION     DATCMF010000035.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1568)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1568)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1568
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4678"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(28..429)
                     /gene="ndk"
                     /locus_tag="VIL14_00430"
     CDS             complement(28..429)
                     /gene="ndk"
                     /locus_tag="VIL14_00430"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004550 - nucleoside diphosphate kinase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HEY8522201.1"
                     /translation="MSEQTLIVIKPDAFERKLTGTILSRFENKGFLIKELKSYIFTKE
                     KAEQFYSAHQNRSFFNELVSFISSSTVVVCILEGENAINVVRQMIGSTRSFEAQPGTI
                     RGDYGLGITNNVIHASDSYESFIKESKVIFK"
     gene            complement(449..664)
                     /locus_tag="VIL14_00435"
     CDS             complement(449..664)
                     /locus_tag="VIL14_00435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24e"
                     /protein_id="HEY8522202.1"
                     /translation="MSKTATSLRNCFFCGQRIASATGIMLVKNDGSIQWTCSNKCKKN
                     LRNLKRDPRKMKWTNKYVKGGIKVSKS"
     gene            complement(710..925)
                     /locus_tag="VIL14_00440"
     CDS             complement(710..925)
                     /locus_tag="VIL14_00440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S28e"
                     /protein_id="HEY8522203.1"
                     /translation="MSKTIEEKVVPSEVIQIVGRTGIAGEVIQVRVRVLEGKDKGRIL
                     TRNVKGSVRMNDVLMLRETEREARKIK"
     gene            complement(951..1337)
                     /gene="rpl7ae"
                     /locus_tag="VIL14_00445"
     CDS             complement(951..1337)
                     /gene="rpl7ae"
                     /locus_tag="VIL14_00445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7Ae"
                     /protein_id="HEY8522204.1"
                     /translation="MSKPYYVKFEVPKDLVSAIYEALRIAKDSGKIRKGTNETTKAVE
                     RGVSKLAIIAEDVEPPEVVAHLPIICEERNAAYVFVPSKQELGEAMGISVGSAAASII
                     DAGESQHILDEIVNTTKNKNTKSPNQ"
BASE COUNT          461 a          293 c          213 g          601 t
ORIGIN      
        1 actggctgtc gaagattcac gttgttacta cttaaaaatg actttggatt cttttataaa
       61 actttcataa gagtctgaag catggataac attatttgta ataccgagac cataatctcc
      121 tctaattgtg ccgggttggg cctcaaaaga tcgagtagaa ccaatcatct gtcttacaac
      181 atttatcgca ttttctcctt ccaaaataca tacaacaaca gtagaagagg agataaagga
      241 cacaagttca ttgaagaatg atctattttg gtgggcagaa taaaactgtt ctgctttttc
      301 ttttgtaaaa atatatgatt taagttcttt aatcaggaat cccttgttct caaatcgtga
      361 caaaattgtt ccagtgagtt tgcgttcaaa ggcatctggt tttataacta ttaatgtttg
      421 ctcgctcatc tatattatca attctatttt atgatttaga gaccttgatt ccacccttaa
      481 cgtatttgtt agtccatttc atttttcgcg gatctctttt taaattgcga agattttttt
      541 tgcatttgtt tgaacaagtc cattgaatag atccatcatt cttgaccaac atgattccgg
      601 tagcagaagc aatacgttgt ccacaaaaga aacaattgcg taaagaagta gctgttttac
      661 tcatttttaa ttaaacctca tattttttct gtttataatt attattattt tactttattt
      721 ttctcgcttc tctttcagtc tctcggagca tcagtacatc attcatccta acagagcctt
      781 ttacatttct tgttaaaatt ctgcctttat ctttgccttc taaaactctt actcttacct
      841 gaattacttc tcctgcaata cctgttctac caacgatttg aattacttca gaaggtacaa
      901 ctttctcttc tattgtttta ctcattaatt ataacatctc acacttttta ttattgattg
      961 ggagattttg tatttttgtt ttttgtagta ttaactattt catctaaaat atgttgagac
     1021 tcgccagcat caataattga ggcagctgcg gaaccaacac ttatccccat tgcttctcct
     1081 aattcttgtt tactgggtac aaagacataa gcagcatttc tttcttcaca aataattggc
     1141 agatgtgcga ccacttctgg cggttccacg tcctctgcaa taatagcaag tttactaaca
     1201 cctctttcaa cagccttggt tgtttcattg gttccttttc ttattttacc actatctttt
     1261 gctattctta gtgcttcata aatagcactt accaaatctt ttggtacttc aaatttaaca
     1321 taatatggtt tactcattat tcaatatcac cctttgggat catccatctc tttacaaaat
     1381 agagactatt aaaatgttac ctcgattagg agaaatttga tattgtcatc aataaatatt
     1441 aattaatctt tgatttttta tttgtatacc tgtgcaaaaa gagtgtgggt taatttacaa
     1501 taaaataaag aatctccgac attgaatata aatataattt atcaaccctt attcttttaa
     1561 ataaaaag
//
LOCUS       DATCMF010000036         1508 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_4740, whole genome shotgun sequence.
ACCESSION   DATCMF010000036 DATCMF010000000
VERSION     DATCMF010000036.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1508)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1508)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1508
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4740"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            141..434
                     /locus_tag="VIL14_00450"
     CDS             141..434
                     /locus_tag="VIL14_00450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HEY8522205.1"
                     /translation="MTIAILPDVDEQRCIGCALCVEICTALGPDVLRVKPVEGWKRGK
                     AFVFYPERCISDGACVGVCPTHAIFWMRPMEYTPGQPVPLHKNGVFDKGWEEG"
     gene            550..1113
                     /locus_tag="VIL14_00455"
     CDS             550..1113
                     /locus_tag="VIL14_00455"
                     /inference="COORDINATES: protein motif:HMM:NF024635.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY8522206.1"
                     /translation="MIRIGITGNPGVGKHTIADLLSKKIKNSKIIDINKIIISNQAFN
                     YETFEADLKKTRLFLLKELINDNVIVVGHLLPYVIKRNELDFIAILRKSPYSLIDVYE
                     KRKYSNKKLQENILCEILGICFYDTLKVFGKLKISEIDTTNNDPEESVKKIIYHYDYK
                     SKRQIGLVDWLNVISKNGDNRKFLYIN"
     gene            1198..>1508
                     /locus_tag="VIL14_00460"
     CDS             1198..>1508
                     /locus_tag="VIL14_00460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522207.1"
                     /translation="MSVAFRKFGEESIQFLGKKVSIETSDKKTYSGTLIGINERLDII
                     LEDLETSGIIKIIINGSFVKEIRLMEKPFDLKALAERFSRVFPGLVKVREDVRAIIVM
                     D"
BASE COUNT          593 a          169 c          251 g          495 t
ORIGIN      
        1 ctttttatta cataaaattt tttatactaa atcttatact gctctgcatt tttaacctta
       61 atatatatta taacgctgtt ttggtatcga catagggttt aaatagtttc gccaacatcg
      121 gaccattagt gaaatattga atgacaattg caatacttcc agatgttgat gaacaaagat
      181 gtattggatg tgcactttgt gtagaaattt gtactgctct tggtccagac gttctcagag
      241 taaaacctgt agaaggttgg aaaagaggta aagcctttgt attttatcca gaaagatgca
      301 tttctgatgg tgcttgcgta ggagtttgtc caacacatgc aatattctgg atgagaccaa
      361 tggaatacac accagggcaa ccagtcccat tacacaaaaa cggtgtattt gacaagggct
      421 gggaagaagg ttaaaaacac aatacactac aatcaaatag aaaatttcaa ctcatttttt
      481 atatttttgt tgtaggcctt tttttatcta tacttttaga tttagtagtt atattttatt
      541 agatatggta tgatacgaat aggaattaca ggtaatcctg gtgttggtaa acatacaata
      601 gctgatttgc tttctaaaaa aataaaaaat agtaaaataa ttgacataaa caaaataatt
      661 atatcaaatc aagctttcaa ttatgaaaca ttcgaagctg atttaaaaaa aactagatta
      721 ttcttattaa aagaattaat taatgataat gtaatagtag ttggacatct tttaccatac
      781 gtaataaaaa gaaatgaatt agattttata gctatactaa gaaaatcacc gtattctttg
      841 atagatgtgt atgagaagag aaaatattct aataaaaaat tacaagaaaa tatactctgt
      901 gaaattctag gcatatgttt ttatgatact ttaaaggtat ttggtaaact gaaaatttct
      961 gaaatagata caactaataa tgatccggaa gaatcagtga agaaaattat ttatcattat
     1021 gattacaaat caaagagaca aataggttta gttgattggt taaatgtaat ctctaaaaat
     1081 ggagataata gaaaattttt atacattaac taaatataaa aaatgttaaa ttaggataaa
     1141 aaaccgggag atattgaaat tatatatagc tcctattata accacaatag aattagcttg
     1201 tctgtagcat ttaggaaatt tggagaggaa tcaattcaat ttttaggaaa gaaggtatct
     1261 atagaaacct cagataaaaa aacatatagt gggacattaa ttggaataaa cgaaagatta
     1321 gatataatat tagaagattt agaaactagt ggaataataa aaataatcat aaatggttca
     1381 tttgtaaagg aaattcgatt aatggaaaaa ccatttgatt taaaagctct tgcagaaaga
     1441 ttttcaaggg tttttccagg tttagtaaaa gtgagagaag atgttagagc tattatagtt
     1501 atggataa
//
LOCUS       DATCMF010000037         1615 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_69309, whole genome shotgun sequence.
ACCESSION   DATCMF010000037 DATCMF010000000
VERSION     DATCMF010000037.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1615)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1615)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1615
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_69309"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(49..357)
                     /locus_tag="VIL14_00465"
     CDS             complement(49..357)
                     /locus_tag="VIL14_00465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522208.1"
                     /translation="MTHNEIDIDQFILLTIYPSIALFGITFFAKKTKLVSSIQYCLQA
                     FSCIVFSVIYLIFIPNGGAQGLALVLLLFSGILLLLARKHAIHPEENDRSSSRKIPFI
                     "
     gene            complement(411..992)
                     /locus_tag="VIL14_00470"
     CDS             complement(411..992)
                     /locus_tag="VIL14_00470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522209.1"
                     /translation="MSDNLEEYFTLEMAYNILLKEYQISSLQEIPYDTYQRLAITIGN
                     LKAKEYDILEKRIVQKIIENLSIISNLLLQIRIEKILIGNINSNLEIGYSKMTDEEKF
                     IIDGEIQSKRKRKEITTLITNGQSKILEKITDTIKQKKLLIMFVKPMEQFVGVDMYKY
                     GPFSVDDVANLPFENALSLVNNKIATEIAPIFD"
     gene            1093..>1615
                     /locus_tag="VIL14_00475"
     CDS             1093..>1615
                     /locus_tag="VIL14_00475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004356 - glutamine synthetase activity
                     [Evidence IEA];
                     GO_process: GO:0006542 - glutamine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine synthetase beta-grasp
                     domain-containing protein"
                     /protein_id="HEY8522210.1"
                     /translation="MPYRIIEGRIEQQDFSSDDIMDKLEKDDIKFIDLQFTGLFGKFH
                     HITISANMFKKTDFENGLPKVDGSSIRGFTEIHESDLIVRPDPSTYAIIPWIEKYKTC
                     RLICDILRGGSNRIQFLRDPRGIAKKAEKYVNENGYSLSYWGPEVEFFVFDKLLVNTL
                     TPYHGQSYEIISKE"
BASE COUNT          555 a          227 c          220 g          613 t
ORIGIN      
        1 atttattcta atttacattt ttatcatgat aaggctcctt aaaatccatt aaataaatgg
       61 gattttcctt gatgatgatc tatcattttc ctcaggatgg attgcatgtt ttctagccaa
      121 taataataat ataccactaa ataatagtaa tactagtgct aacccttgcg ctcctccatt
      181 tggaataaaa atcagataga taacagaaaa tacaatacat gaaaaagcct gtaaacaata
      241 ttggatagat gatactaact tagtcttttt tgcaaaaaat gtaattccaa ataaggcaat
      301 actaggataa attgttagca aaataaactg gtcaatatct atttcattat gtgtcaataa
      361 tttaatgaat aatattcata atatttttct ttcctccttc caattaaata ttaatcaaaa
      421 ataggagcga tctcagttgc aattttatta ttaacaagag ataatgcatt ttcaaaaggt
      481 aagtttgcca catcatcaac gctaaaagga ccatatttat acatatcaac tccaacaaat
      541 tgctccattg gttttacaaa cataattagt aatttttttt gtttaattgt atctgttatt
      601 ttttctaaaa tctttgactg accattggtt attaaggtcg ttatttcttt tctctttctt
      661 tttgactgaa tttctccatc gattataaat ttttcttcat ctgtcatttt agaataccct
      721 atctctaaat ttgagtttat atttcctata aggatttttt ctattcttat ttgcagtaaa
      781 agattcgata ttatcgataa attttctata attttctgca caattctttt ttcaagaatg
      841 tcatactctt ttgcctttaa atttccaatt gtaatagcta gtctctgata tgtatcataa
      901 ggtatttcct gtaatgaaga aatttgatat tcttttaaaa gaatattata tgccatttct
      961 aatgtgaaat actcttctaa attgtcagac attaagttaa tatggagcag aattaagtta
     1021 taaataattc cgtttttcta tttaaatttc tgaaagcctt aattatgaga cccttaatta
     1081 ttaccaactg atttgccata taggattatt gaaggaagaa ttgaacaaca agattttagc
     1141 agtgatgaca ttatggataa attagaaaaa gacgatatca agtttataga tttacaattt
     1201 actggacttt ttggaaaatt tcatcatatt actatttctg caaatatgtt taaaaaaacc
     1261 gattttgaaa atggattacc aaaagttgat ggttcttcaa tccgtggatt tactgaaatt
     1321 catgaatctg atctaattgt tagaccagac ccttctactt atgctataat tccttggata
     1381 gagaaatata aaacctgtag actgatttgc gatattttac ggggaggatc taatagaata
     1441 caatttttac gggatcctcg aggtatagca aagaaagctg aaaaatatgt taatgagaat
     1501 ggttattcgt tatcatattg ggggccagaa gttgaatttt ttgtttttga taaattgtta
     1561 gtgaataccc ttactccata tcatggtcaa agttatgaaa taatttcgaa agaag
//
LOCUS       DATCMF010000038         1890 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_601191, whole genome shotgun sequence.
ACCESSION   DATCMF010000038 DATCMF010000000
VERSION     DATCMF010000038.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1890)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1890)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1890
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_601191"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(196..1074)
                     /locus_tag="VIL14_00480"
     CDS             complement(196..1074)
                     /locus_tag="VIL14_00480"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase"
                     /protein_id="HEY8522211.1"
                     /translation="MAQTTKTKYVHPEVLVDTQWVEEHLEDKNVRIVEVDYDPKSNYN
                     LGHIPNSILIDWKKDVNDPITRDILSLNNFQNLLQNNGINNNTTVILYGDFNNWFAAF
                     AFWVFKYYRYNDVRLLDGGRKKWLEEDRPISKDTINYAKGNYRFNEEIKPNDEIRAYL
                     GQVKNALVSRRYFQLSLVDVRSGAEYRGEITAPPEYPTEGAQRGGHIPLAKNVPWAQV
                     INDDGTFKTLEEIRKIYDEQGITQDKDIITYCRIGERSSHTWFVLKYLLGYPNVKNYD
                     GSWTEWGNIIGNPIEK"
     gene            1398..1634
                     /locus_tag="VIL14_00485"
     CDS             1398..1634
                     /locus_tag="VIL14_00485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522212.1"
                     /translation="MFEQNKIETEKQLRNEGKSEYYFPHTLTFYKHLLKCRSCSWNVS
                     YSEHSGSLDVSAESIFCPVCKEGKIDSSKYLQYR"
BASE COUNT          615 a          287 c          229 g          759 t
ORIGIN      
        1 atgaacacaa ctttcctata ttatgtaaat tttgcgtata aattatacca taaaggctag
       61 taatgctttt cagcttttag cggcttgaaa taaaagtata atttgttgtc ctcttagaaa
      121 tttgagtata ttgttgtata ataaattgtc tattatacaa aattaagttt ttttttagta
      181 ttattcataa ctatatcatt tttcaatagg gtttccaata atattgcccc attctgtcca
      241 tgatccatca taatttttaa cattcggata acctaacaaa tactttagta caaaccatgt
      301 atgggaagag cgctcaccaa ttctacaata tgttataata tctttatctt gagtaattcc
      361 ttgttcatca tatattttac gtatttcttc taaggttttg aatgttccat cgtcatttat
      421 tacttgagcc caaggtacat tttttgccaa tggaatatga cctcctcttt gtgcaccttc
      481 tgtcggatat tctggtggtg ccgttatttc acctctatat tctgctccac ttcttacatc
      541 cactaatgat aactggaaat accttctact aactaatgca tttttaactt gaccgaggta
      601 tgctcttatt tcatcattgg gcttgatttc ttcattaaat ctataatttc ctttagcata
      661 atttattgtg tctttgctaa ttggcctatc ttcttctagc catttctttc ttcctccatc
      721 taaaagtcta acatcattat atctataata tttgaaaacc caaaaagcaa atgctgcaaa
      781 ccaattgtta aaatctccat acaggataac cgtagtatta ttattaattc cattattttg
      841 aagtaaattt tggaaattat ttaggctcaa tatatctctg gttataggat cattgacatc
      901 ctttttccaa tcaattaata ttgagttagg tatatgacct agattgtaat tcgattttgg
      961 atcatagtct acttctacaa ttcttacatt tttatcttca agatgttctt ctacccattg
     1021 tgtatcaacc agaacctctg gatgaacata ttttgttttt gtagtttgtg ccataataat
     1081 tattgtaagg taagatatat tattgctatg atatgtgtaa taaattgaaa ttatgtgtaa
     1141 aataaagtag gttttattca ttacaattat ttaatcaatt ctcctacaat aaaaaatatt
     1201 tatctttctg gtttaattat tattgttaat tacataattc cctaaattga taacattttt
     1261 cttagatttt atacttatta gttcatttaa attttgatag ttaatatgca aaaagagcac
     1321 ttaacatttc taaattgcat atttagattt cattatatta cctataagat gtttatatat
     1381 ttatagcaat gtctacaatg tttgaacaaa ataaaattga aacagaaaag cagttgagaa
     1441 atgaaggaaa aagtgaatat tattttccac atactttgac tttttataag catctcttaa
     1501 aatgtaggtc ttgttcatgg aatgtttcat attcagaaca ttctggatct cttgatgtat
     1561 ctgctgaatc gatattctgt cctgtatgta aagaaggaaa aattgattct tcaaagtatc
     1621 ttcaataccg ataaaaaatt ttgatctaac taatcttttg tttcaaaaat attttgttaa
     1681 aaaatggatt taaaatagga ctatctaagc attataatta atttaatgag acttgatata
     1741 caaaatatac ctactctaac ctatatcatt ttattcggat ccatgtaata taggtaattt
     1801 taaccagtta cctatcatac aatcgctgtt tagactatga aatctaatta ctattttaca
     1861 tttaaaccaa gtcatagtaa tttatgtatt
//
LOCUS       DATCMF010000039         2559 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_201843, whole genome shotgun sequence.
ACCESSION   DATCMF010000039 DATCMF010000000
VERSION     DATCMF010000039.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2559)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2559)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2559
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_201843"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..275)
                     /locus_tag="VIL14_00490"
     CDS             complement(<1..275)
                     /locus_tag="VIL14_00490"
                     /inference="COORDINATES: protein motif:HMM:NF012436.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008199 - ferric iron binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HEY8522213.1"
                     /translation="MRVSSEIAKAINDQISYEASSSHTYVAIGSWCERTGYDGSAAFF
                     FEQAKEENTHMLKFIHYLNNAGAEAIIPAIEKPQDKFDSLESTFQAGL"
     gene            927..1136
                     /locus_tag="VIL14_00495"
     CDS             927..1136
                     /locus_tag="VIL14_00495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522214.1"
                     /translation="MFPIKLLDKINEELYRYYLQIITFQNEDPHYQDIAAKFSKNLSE
                     LEDVIEDIKKYNNNKKNNLLIHIFK"
     gene            1481..>2559
                     /locus_tag="VIL14_00500"
     CDS             1481..>2559
                     /locus_tag="VIL14_00500"
                     /inference="COORDINATES: protein motif:HMM:NF019845.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HEY8522215.1"
                     /translation="MRAVIFEKQGFDNLKIKDNVQNPQVLDYDVLIKVIAAGVNPIDY
                     YVISGYRTIQQQQKKKDEQLKQKAPPISQLPVNPLPHVPGAEFAGVVEKIGSHVRTIK
                     KGDRVTIYNRIFDNTCDMCISGNEMLCRTGGIISVVNNGGFSEYVSIPERNVFKIPDN
                     IDWNTSVSLPVSGLTAFHALKEAQLKINDSLLIFGASGNTGMIAVQLGKRMASRVIAV
                     STKKWIKDEYGADYLITDYNHIIDKVKEITNGKMADIVINSLGRDTWKDSFSSIGING
                     RWISFGTMTGNNVELNMQELYSKQIKLIGSNGGNREEFRELIEFASYSNTIGDPLKIK
                     VWKRFNLENIYQAIEALIDKKREGRV"
BASE COUNT          995 a          317 c          371 g          876 t
ORIGIN      
        1 agaccagctt ggaaagtaga ttccagtgaa tcaaatttat cttgaggctt ttctattgct
       61 ggaattatcg cttctgctcc agcattatta agataatgaa tgaactttag catgtgtgta
      121 ttttcctctt tagcttgttc aaaaaagaat gctgcacttc catcatatcc agttctttca
      181 caccatgacc caatagcaac atatgtatgg gaagatgatg cctcataaga aatttgatca
      241 ttaattgctt ttgcgatttc tgatgaaact ctcattgtaa caatcttagt atttgtcagg
      301 tatctatatt ttttggcatt gagtttttta aaatactcgt aacctatttt tcatttaaga
      361 atagaagtta agtctaacta gacgtgaata caaaaattgg atattaatat gtaaatgtat
      421 tgatataagc ttgtttctat tacctaaata gaggaaacta tttcatttga taatattaaa
      481 ttatctatag aataaacaag taactaaaag aaaatataaa ggattaagag tatttaacta
      541 ttatttggaa gagtccaaaa tttatgtcaa atttgtttca catcccactg gtcgcattgc
      601 gatattaatt ctataattgg attcactcta aaaataaata agaaaggtaa attcaaaaat
      661 aggattgttt attaatacat cattttttta tttgctttaa tttttaaata taaccttact
      721 agataattta actaattatt attacaaaat taaatgatga attaataaca tattcattga
      781 ataattttga tagactattt ctaataatat tcaagttctt ataataattc caaagaagta
      841 acaatttaag ataagaaata caaataaaaa aaataaagtc aaaagaatag aatctaatat
      901 tagattatat caaatttaat tattagatgt tcccaataaa actattagat aaaataaatg
      961 aggaactcta tcgttattat ttacaaatta ttacatttca gaatgaagat ccacattatc
     1021 aagatattgc agctaaattc tcaaagaatc tatcagaatt agaagatgtt attgaagata
     1081 taaaaaaata caataataat aaaaaaaata atttactaat tcatatattt aaataaataa
     1141 aaaaataatc acatcaattt tatctaatat ttttaaatct tgaacattta gttttttgtt
     1201 actaaatttt taaaaattta gaataataac ccccttggaa caattatctg ccttgctatt
     1261 cttattatta taattcaatg atagcaaaca gcaatattct ttcatattct tcttctttgt
     1321 cctaacaaat gaatcttcac actcaaataa aaaacataaa ataatataca aattttagaa
     1381 atcttatgta ttcctcctct acttattttt tgattataaa agagaatgac aatagaattt
     1441 tgtttataat ctttaaattg tataattaat agtacaaatt gtgagagcag tcatttttga
     1501 gaagcaagga tttgataatc tcaaaatcaa agataatgtg caaaatccac aagttttaga
     1561 ttatgatgtt ttaattaaag ttatagcagc aggagtaaat cctattgatt attatgtgat
     1621 ttctggttat agaacaatcc aacaacaaca aaagaaaaaa gacgaacaac taaaacaaaa
     1681 ggctcctcca atatcacaac taccagtcaa tcctcttccc catgttcctg gggcagaatt
     1741 tgctggagta gttgaaaaga taggatctca tgttagaaca ataaagaaag gagacagagt
     1801 taccatctat aatagaattt ttgataatac ttgtgacatg tgtattagtg gaaatgaaat
     1861 gctttgcaga actggtggaa taataagtgt tgttaataac ggaggttttt cagaatatgt
     1921 ttccattcct gaaagaaatg tatttaaaat tccagataat attgattgga atacatctgt
     1981 aagcttgcca gtatcaggat taacagcatt tcatgcttta aaggaggcac aattgaagat
     2041 taatgattca ttacttattt tcggtgcatc tggcaataca ggtatgattg cagtacagtt
     2101 aggtaagaga atggcatcta gagttattgc agtttctaca aaaaagtgga ttaaagatga
     2161 atatggtgca gattatctaa ttacagatta taatcatatt atagacaaag ttaaagaaat
     2221 aactaatgga aaaatggcgg atattgtaat aaattctctt ggcagagata catggaaaga
     2281 cagtttctct tccattggaa ttaatggcag atggatttct tttggtacga tgactggaaa
     2341 taatgtagag ttaaacatgc aggaattata ttcaaaacag ataaagttaa ttggatctaa
     2401 tggagggaat agagaagaat tcagagaatt aatagaattt gcatcttatt ctaatacaat
     2461 tggtgatccc ttaaaaatta aagtttggaa aagatttaat cttgaaaata tttatcaagc
     2521 cattgaggct cttattgaca agaaaagaga gggaagagt
//
LOCUS       DATCMF010000040         1800 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_533116, whole genome shotgun sequence.
ACCESSION   DATCMF010000040 DATCMF010000000
VERSION     DATCMF010000040.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1800)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1800)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1800
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_533116"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..667)
                     /locus_tag="VIL14_00505"
     CDS             complement(<1..667)
                     /locus_tag="VIL14_00505"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY8522216.1"
                     /translation="MNERKPSEIILTLKNVSFGYNYHLPVIDGITLYIPKGGFIGLLG
                     PSGAGKSTLLKLIVGLYKPWNGIIKFKNFSNTKNIKTTVIGYSPQVESIEWDFPVTVR
                     EFVSLGLWNQSGFFPWINKTSRIEIDCLLHALGIGDYATRHIKELSGGEQKRVFLARA
                     LIHNPDILILDEPTSGLDKTNREKFLQILSDLNLKGMTIIMTTHDIDGVAKKLPWIVC
                     LNKN"
     gene            complement(756..1730)
                     /locus_tag="VIL14_00510"
     CDS             complement(756..1730)
                     /locus_tag="VIL14_00510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter substrate-binding protein"
                     /protein_id="HEY8522217.1"
                     /translation="MIILFFSSFKPSYALDQDNISQQMVDKLNVVTSVAPITNIVQNI
                     GGNKINLIGLVPEGINSHTFEMIPSDIIKINDADLIILDGLNLEAGIEQTAENIICKN
                     PNNIELLKLGDNTISKGDWIFDFSFPKDKGDPNPHLWLNVEYAIKFANLTRDKLIEMD
                     PPNSQYYIENSNKYTKLLKQLDEGIKKSVDTIPVENRKLLTYHDSWAYFAPRYGMEVI
                     GAIQASDFSDPSPKDIADLINQVRIEQIPAIFASEVFPTNIIDQIAKEGNVTIVETLS
                     DDDLPGNTGDNNHSYVGMMLENMKNMILPLGGNIDALKDISPQNIPST"
BASE COUNT          561 a          296 c          264 g          679 t
ORIGIN      
        1 tgtttttatt cagacagact atccatggta actttttagc tactccatca atatcatggg
       61 ttgtcataat tatagtcatt cctttcaaat ttaggtcgct taatatctgt aagaactttt
      121 ctctgttggt tttatcaaga cctgatgtag gttcatctaa aataagtata tcagggttat
      181 gaatcaatgc tcttgccaag aatactcgtt tttgttctcc acctgataat tctttgatat
      241 gacgagttgc ataatcacct attcctaatg catgtagtaa acagtctatt tctattctgg
      301 aagttttatt tatccatggg aaaaaccccg attgattcca caatcccaat gagacaaact
      361 ctcttacagt aacaggaaaa tcccattcta tgctttcaac ctgaggtgaa tatcctatta
      421 ctgtagtttt tatatttttt gtgttactaa aatttttaaa ctttattatt ccgttccatg
      481 gtttgtataa acctacaatc aatttcaaaa gagtagattt acctgcacca cttggaccca
      541 ataaaccgat gaaaccacct tttggtatat ataatgttat accatcaata actggcaaat
      601 ggtaattgta accaaatgag acgtttttca aagttaaaat gatttcagaa ggttttctct
      661 cattcattta cattcatttg cggtttgtct tttgttatta aaaaatgaga taataacctt
      721 tattgattta tatttaatat ataaaaaaag gaaatttagg tagaaggtat attttgagga
      781 ctaatatctt tcaatgcatc aatattgcca cctaaaggta atatcatatt cttcatattc
      841 tctaacatca ttcctacata cgaatgattg ttatctcctg tattgcccgg taaatcatcg
      901 tcgcttaatg tttccacaat ggttacattt ccttctttgg ctatttgatc gattatgttg
      961 gtaggaaata cttcggatgc aaatattgct ggtatttgct caatgcgaac ctgatttatc
     1021 aaatctgcaa tatctttggg gctaggatca ctaaaatctg acgcttgaat ggctcctatt
     1081 acttccattc catatcgagg ggcaaagtaa gcccaagaat catgataagt aagcaacttt
     1141 ctattttcta caggaattgt atcaacagat ttttttattc cttcgtctag ttgttttagt
     1201 aactttgtat atttatttga attttcaata tagtattgtg aattaggagg atccatttct
     1261 attaatttat cacgtgttaa attagcaaac ttgatggcat attcgacatt tagccaaaga
     1321 tgaggatttg gatcaccttt atcttttggg aaactaaagt caaaaatcca gtctcctttg
     1381 gatattgtat tatctcctag ttttaataat tcaatattat ttggattttt acaaattata
     1441 ttttctgcag tttgctcgat acctgcttcg agattaagcc catcaaggat aatgagatcg
     1501 gcatcattaa tttttattat atctgaagga atcatctcaa atgtatgaga atttattccc
     1561 tccggaacta atccaattaa gttaatttta tttcctccaa tattttgaac gatattggtt
     1621 atgggagcaa cagaagttac tacatttagt ttgtctacca tttgttgact aatattgtct
     1681 tgatccaaag cataggatgg tttgaatgaa ctaaaaaaaa gaattatcac aactattaaa
     1741 aatgatttac atactataac agaatcattt ttcataaagt gattatttta tttcagatat
//
LOCUS       DATCMF010000041         1664 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_69488, whole genome shotgun sequence.
ACCESSION   DATCMF010000041 DATCMF010000000
VERSION     DATCMF010000041.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1664)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1664)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1664
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_69488"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            425..991
                     /locus_tag="VIL14_00515"
     CDS             425..991
                     /locus_tag="VIL14_00515"
                     /inference="COORDINATES: protein motif:HMM:NF012417.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0045735 - nutrient reservoir activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEY8522218.1"
                     /translation="MLRNIYLKIKVRVLYKENIFFSQKKEINKDYFRGEVVMIEVLNQ
                     NNSVEHEMYHVFFRKGALTTLHFHETEQILITTNGKGILCLFKENIIENLEESAETIL
                     LEDGDVVSIPPFIWHFHGALKDDFAHIALRNRYRTDSSGNKIQAGNVWEKDFVDHLQH
                     LNKTEMYELSLKIDQRVKEIVQNELVKA"
     gene            complement(1028..1591)
                     /locus_tag="VIL14_00520"
     CDS             complement(1028..1591)
                     /locus_tag="VIL14_00520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522219.1"
                     /translation="MNSTRPIGITIISILMILNGSFLLFSGIVIFFLASNFATTINSL
                     DMISSNGTEINITNFSNNNNNSNIIKNLNYFIYFIAVIITLFSLIHFLISYGLLKGKS
                     WARTITLIISFISVLGNVLMILIVFSLFTIIESILSNPSILFGNIFTIIINSLIIFYL
                     LRKEVKAYFDFTSSKKPSFSSSFDELR"
BASE COUNT          653 a          182 c          234 g          595 t
ORIGIN      
        1 tattcacttc aatatgttaa ttcaatgagg ataatgaacg agataattgg caaaattact
       61 taagatgtac atttccttat taatgctatt tgtgtttagg tatattctat gtttcaaaaa
      121 taaggtgggt ctgataagtt tcatacaatt tgcacatcaa attatgatgc tttttcaata
      181 gtcatattgt tagaagatag tttcaaaata tgttatcaaa ataactaata cattactaaa
      241 gtttctttta tctttacaat attgatttcg ttttcatatc tctttcttca attaatccta
      301 atattcagaa aaatagtatt acttttgatt ttcaatagat agtatatcaa atatcaacat
      361 tagaattata tgaattaaga tttgttttat tcattataat attttccttt actatttcta
      421 tataatgctt agaaatatat acttaaaaat taaggttaga gtattgtata aggaaaatat
      481 ttttttctca cagaaaaaag agatcaataa ggattatttt agaggagaag ttgttatgat
      541 tgaggtttta aatcaaaata attcagttga acatgaaatg tatcatgtat tttttagaaa
      601 aggtgcttta actactttac attttcatga aactgaacaa atcctaatta cgacgaatgg
      661 aaaaggaatt ttatgtctat ttaaagaaaa tattattgaa aatttggaag aatctgcgga
      721 aacaattcta cttgaagatg gtgatgttgt tagcatacct ccatttattt ggcattttca
      781 tggtgcatta aaagatgatt ttgctcatat cgcattaagg aataggtata gaactgattc
      841 aagtggaaac aaaatacaag caggaaatgt atgggaaaag gattttgttg atcatttaca
      901 acacttaaat aagactgaaa tgtatgaact ttctttaaaa attgatcaaa gagtaaaaga
      961 aatagtccaa aatgaattag tgaaggccta actttagata accaccataa gttaataact
     1021 tatataatta acgtagttca tcaaaagatg aagaaaagga tggtttcttg ctagacgtaa
     1081 agtcgaaata cgctttaact tcttttctta aaagataaaa tattattaaa ctatttatga
     1141 ttatagtaaa aatatttcca aataatatag atggattgct taaaattgat tctattatag
     1201 tgaacaaact aaacactatt agaatcatca aaacgttacc tagtacagat ataaaagata
     1261 ttattagagt aatagtacgt gcccaggact taccttttaa aagcccatag gatattaaga
     1321 aatgaattaa tgaaaacaga gttataataa ctgctataaa ataaataaag taattcaaat
     1381 ttttgattat gttagaatta ttgttattat tactaaaatt ggtaatattt atttctgtac
     1441 catttgaaga aatcatatca aggctattta tagtagtagc aaaatttgag gctagaaaaa
     1501 aaatcactat tccactaaat agtaaaaatg aaccattgag tatcatcaaa atagatatta
     1561 ttgttatacc gatagggcgt gtactattca tcaagaaatt tgttatatag ctatggattt
     1621 ataagtatat aatttcacat attgctaaca tgcgaataat aaaa
//
LOCUS       DATCMF010000042         2579 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_138158, whole genome shotgun sequence.
ACCESSION   DATCMF010000042 DATCMF010000000
VERSION     DATCMF010000042.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2579)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2579)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2579
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_138158"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1354
                     /locus_tag="VIL14_00525"
     CDS             <1..1354
                     /locus_tag="VIL14_00525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522220.1"
                     /translation="SNGRFNAVVPFSALGLWNIEIQGKTLQPNTPNTIATFEINIKPR
                     ISDLQFNITEYKSPQNSLLLYPVYQASTDSIWLGDSLPGSGRLWKFDIENKNYQEHTI
                     NGINLITLSVFDPKNPNILWFIDPTSNILGKFNTDTNKTETYELPKKGVISGLTIDNS
                     DNVWMSIIQDNSILRFDINKNNFETFRIPTENSRPLSLIYDENNNYVWFAESIGKIGR
                     LDIQTKTINEYPNVTESNTSKRSILSEPTALLLDAKNSNLYISDHEKNSVIRFNTLTS
                     AFTEYHLTDINGLAFGMALDAYDNLWIAQHVSDTLAILDPDTGETINMDIPTSNSFVQ
                     YLVTDSKKDVWFAEQRGNALAKVAIKFIPNNSPNIALIPSSVTDNDKNNNNNQTDNNI
                     ANKTIFNEFRFSDFFGPFIIIAIAASTILYVNSSEQLRKKLLDIENIEAKKIKGNKKK
                     "
     gene            1612..>2579
                     /locus_tag="VIL14_00530"
     CDS             1612..>2579
                     /locus_tag="VIL14_00530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522221.1"
                     /translation="MKLIQTKLLFDGSNEKKNCFIGIEGNEIKFVGHNQPSGTHEIIE
                     HCEAVTPSFIDAHSHIGMVRAGEPSNEEEANEHMDSISPLSNALHSIYMDDPSFQESI
                     ESGILYSVVLPGSGNVIGGKAVLIRNFSSNITNAFISDIGIKTALGYNPRSTIKWKGT
                     RPSTRMGAIAILRDNLLKAKKAMTLLAKKKKLIDEIDPQLELFLDILKKKYKLMVHVH
                     KEDDAMIMLELVKEFKIEAIANHLCDVHNENIFQQLQLNKIPIIYGPLDSFPYKVELK
                     HESWRNIEKLLRSHSKFALMTDHPVLLQRNLFYCLRHLLRFGTSKA"
BASE COUNT         1019 a          374 c          393 g          793 t
ORIGIN      
        1 ctctaatgga cgattcaatg cagtagttcc ttttagtgca ttaggattat ggaatatcga
       61 aatacaggga aagacattac agcctaatac tccaaatact attgctacct ttgaaataaa
      121 tataaaaccg agaatttctg atttacaatt taatataaca gaatacaaat ctcctcaaaa
      181 cagtctattg ctttatcctg tgtatcaggc tagtactgat tctatttggt taggcgattc
      241 cctaccagga agtggaaggt tgtggaaatt tgatattgag aataagaact accaagagca
      301 tacaatcaat ggtataaatc taataacctt atctgttttt gatccaaaaa atcctaacat
      361 cttgtggttt atagatccaa cctctaatat attaggtaaa ttcaacactg acactaataa
      421 aactgaaaca tacgaactac caaagaaagg agtgatatca ggcttgacaa tagataacag
      481 tgataacgta tggatgagca ttatacaaga taattcaatt ctaagatttg acataaataa
      541 aaataacttt gaaacgttta gaattcctac agaaaattca agaccattaa gccttattta
      601 tgatgaaaat aataattacg tctggtttgc ggaatcaata ggcaaaatag gaagattaga
      661 tatacaaact aagacaatta acgaatatcc taatgtcaca gaatccaata cttcaaagag
      721 atctatctta tctgaaccaa cagcattact gttggatgca aaaaattcta atctctatat
      781 tagtgaccat gaaaaaaatt ctgttattcg atttaatacg ttaacttctg catttacaga
      841 atatcattta accgatatta acggattagc atttggaatg gctctagatg cttatgataa
      901 tttatggata gctcaacatg tttcagacac actagcaatt ctagatccag atacaggaga
      961 aactattaat atggatattc caacgtcaaa ttcttttgta caatatcttg tgacagattc
     1021 aaaaaaagat gtatggtttg ctgagcagcg aggcaatgct ctagcaaaag ttgcaatcaa
     1081 atttattccc aataattcgc caaacatagc attaatccca agttcagtaa ctgataatga
     1141 taaaaataat aacaataatc agacagataa caacattgcc aataaaacaa tatttaatga
     1201 atttagattt agcgattttt ttggtccatt tattataatt gcaatagctg cttcaacaat
     1261 actatatgta aatagtagtg agcaattgag aaaaaaactg ttagatatag aaaatattga
     1321 agctaaaaaa ataaaaggta acaagaaaaa ataattctat ttatttttac gttcaagata
     1381 aagtgaatcg agaatcaagt aaagatggaa taaaactaga ataaatgcaa ttgtaaagga
     1441 atatttaaaa tggttgataa catctataaa actcataata aatgtctttc agccaatagt
     1501 taaatatttc aaaaaattta attcaatgac atattcctat aataaacata cttaataatt
     1561 aatctgaata ttataaatat tataaaggaa aagaaaaata ttaagtcact catgaaatta
     1621 atacaaacaa aattattatt tgatggtagt aatgagaaaa agaattgttt tattggaatt
     1681 gaagggaatg aaattaaatt tgtcggtcat aaccagccat ctggaacaca cgaaattata
     1741 gaacattgtg aagcggtcac cccctcattt attgatgctc atagtcatat aggtatggtt
     1801 agagctggag aaccttctaa cgaagaagaa gccaatgaac atatggattc catttctcct
     1861 ttatctaatg ctttgcatag tatatatatg gatgatccct cctttcaaga atctattgaa
     1921 tcaggtattc tatattcagt agtgttaccg ggaagtggaa atgtaattgg tggtaaagca
     1981 gttttaatca gaaatttttc gtcaaacata actaatgctt ttatttcaga tatcggaatc
     2041 aaaacagctt taggatataa cccaagaagt accataaaat ggaaaggaac tcggccttct
     2101 acaagaatgg gagcaatagc cattcttcgt gataatctct tgaaagctaa aaaagcaatg
     2161 acacttttag caaaaaagaa aaaattgatt gacgaaattg atccacagtt agaacttttc
     2221 ctcgatattt tgaaaaaaaa atacaaattg atggtacatg ttcacaaaga agatgatgct
     2281 atgattatgc tagaattagt taaagaattt aagatagagg cgattgcaaa tcatttatgt
     2341 gatgttcata atgaaaacat attccagcaa ttacagttga ataaaattcc tatcatctat
     2401 ggacctttag attcttttcc atacaaagta gaattaaaac acgaaagttg gagaaatata
     2461 gaaaaattgt taagatcaca ttctaaattt gcattaatga ctgatcatcc tgtactatta
     2521 caaagaaatc tcttttactg tttaagacat ttattaagat ttggtacttc aaaagcaga
//
LOCUS       DATCMF010000043         3428 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_5167, whole genome shotgun sequence.
ACCESSION   DATCMF010000043 DATCMF010000000
VERSION     DATCMF010000043.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3428)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3428)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3428
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5167"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(524..1255)
                     /locus_tag="VIL14_00535"
     CDS             complement(524..1255)
                     /locus_tag="VIL14_00535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522222.1"
                     /translation="MSLQVLSTIFALSIYFIIFSSLYSDSNLFSVEAQPSTISDHEFH
                     GYIEQMIGHLDASILNVQNNNSVLAVAHALHPIEEIVDVINSRLIQTNETLAKDFSSK
                     LNKYVQTVRSDNLNKIIIEKRELKKLLSNALDQSISLEKRTNLDHILNVTAELITIAS
                     EEYAESMSQGNIINFLEYQDGQQFFQRSISLLNKSQAYLSENDKNYLTGLNKLKKGMD
                     SKIDPSEIDMNVKDMLCEIKKGLYC"
     gene            1728..2561
                     /locus_tag="VIL14_00540"
     CDS             1728..2561
                     /locus_tag="VIL14_00540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HEY8522223.1"
                     /translation="MKKKKFIAAIVQMKSSINKQDNLLESLKYIKEAADRQADYIFFP
                     EFQMAFSSNTQTLDELYNTAEPLANSKFIKKLCQYSKKYKIGIVGTFFEKNPYKTDKK
                     VFDTAFSTDKNGKIVSVYRKLHLYDAFGFKESLKFNRGDEIPKLVITTIGKMGLMICY
                     DIRFPELSRILTVSGADIIVIPSGWVHGIMKEEHWITMLKARAIENGVYVIAPNQVGN
                     IFCGRSMIVDPLGSILTDLGDKSGIEIVEIQRERIDEVRKTLPLLKNRRTDIYNINIL
                     N"
     gene            complement(2553..>3428)
                     /locus_tag="VIL14_00545"
     CDS             complement(2553..>3428)
                     /locus_tag="VIL14_00545"
                     /EC_number="5.6.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF013311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003916 - DNA topoisomerase activity
                     [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase"
                     /protein_id="HEY8522224.1"
                     /translation="FFTTFGETAIFKKIKIDILVDDKFLFNKEGKNILLKGWIEFYNS
                     FYNYSENSIDYSDLKIGDTLTNIDIIKDSRLTDPPVYFNYSSLLSKMELEEIGTKSTR
                     GNIIELLIRRNYVTVNNYKNIKSNDLGIFLIDFMEKNLPKIVSTDLTRALEHYLEDIE
                     KGITDRIFILNSIISDLIDSMYHIQKIECISPIEYQPIRSNNFMLIGACPVCQKGKFQ
                     IIRSKKTKKRFISCSGYFSDGCTASAPIPQQGSIKNTNKICKDCNWPILNVFYPTKRY
                     SKNFCTNINCPTRLI"
BASE COUNT         1240 a          462 c          465 g         1261 t
ORIGIN      
        1 atgctgttaa gttaccttca cctccttctt tgataactag catttaattt ctaatttttg
       61 aatcatagaa tatacaaata attttaacat attgtataaa tcttatagtt ccaatttatt
      121 tttagtatgg gatagtcatt aactaagcat tatgttctac ccctaaaata cattattact
      181 ctttcaatta aactttttta cagcgtataa aacaccctat gtttcgaaga tgctcgtaca
      241 taccaagtat taacatctgt gtaaaccata tggctacaat atttatcaat taatgctttg
      301 aaaatctctt ccacaaacat atttatctaa aatattaata tggagtacag atctcaagag
      361 ttttcaatta agatccatca tcaatagtga cttttctaat tttaataata gtttcaatca
      421 taacaaatat agcgattatt tactttgtag atgacatgaa tcaaatcttt gtatcaaatt
      481 tcatacagga aaataccagt cttcaattaa tagataaaac gagctaacaa taaagccctt
      541 tttttatctc acaaagcatg tcttttacat tcatatcgat ttcgcttgga tctattttgg
      601 aatccatacc ttttttcagc ttgtttaagc ctgtaaggta attcttatca ttttctgata
      661 agtatgcttg tgacttattt aaaagagata tagatctttg aaaaaactgt tgaccatctt
      721 gatattctag gaaattaatg atatttccct gactcattga ttctgcatat tcctcagatg
      781 caatagttat taattctgca gtaacattga gtatatgatc taggttagtt cttttttcta
      841 aagatataga ttgatctaat gcattgctaa gcaatttttt taattctctt ttctctataa
      901 taattttatt tagattatcg gatcttacag tttgaacata cttgtttagt ttgcttgaga
      961 aatcttttgc taatgtttca tttgtctgaa taagtctact atttattaca tctacaattt
     1021 cttcgatagg atgtaatgca tgggcaacag ctaatacact attattattt tgaacattta
     1081 gaattgaagc atctaaatgt cctatcattt gttctatata accatgaaat tcatgatcgc
     1141 ttatagtgga tggttgcgcc tctacagaaa ataaattgct atcagaatat aatgaagaaa
     1201 aaatgataaa gtatattgag agtgcaaata ttgttgaaag aacttgcaaa ctcataatat
     1261 gtattgcaaa ttgtaaaatg gctattttag tgtattcata tttctcataa atgaaaagca
     1321 gagaaaccaa gtttttaact tattataact attataacta tcatttagta tactcgaata
     1381 gtatttagat cttaagaaaa cctcacttaa ttctctctgt tctttataaa tacttttatc
     1441 attttcattt gaagactatt taataatata tttactggaa taataaaatg aaaacgagaa
     1501 atgaaaaaaa aatacacatc tagaatgaaa atatcaaaag atcttttgta gattgaggat
     1561 atagtaattc tggtatggta tgagtgaatt atcaagaaat catgtataga atactcaaga
     1621 atattttttt attattataa cacaaaaagt ctacatattt gaattaggta taattttagt
     1681 tcaaacatag gaaaatatat taaagtttct tattaaagaa cacatagttg aaaaagaaaa
     1741 aattcatagc tgctattgta cagatgaaat cttcaattaa caaacaagat aatttactag
     1801 aatcactaaa atatatcaaa gaagcagcag atagacaagc agattatatt tttttcccag
     1861 aatttcagat ggctttttcc tcaaatactc aaacactgga tgaactctat aatactgcag
     1921 aaccgttagc aaatagtaaa tttataaaga aattatgtca atactctaaa aaatataaga
     1981 taggaatagt aggtacattc tttgaaaaaa atccttataa aacagataaa aaagtttttg
     2041 ataccgcttt cagtactgat aaaaatggaa aaatcgtttc agtttataga aaattgcatc
     2101 tttacgatgc ctttggtttt aaagagtctt taaagtttaa tagaggagat gaaattccaa
     2161 aactcgtcat aactacaata ggtaaaatgg gtttgatgat ttgttatgat ataagatttc
     2221 cagaactctc tagaatactt actgttagcg gtgcagatat aatagtaata ccatctggat
     2281 gggttcatgg gataatgaag gaagaacatt ggattaccat gcttaaagca agagctatag
     2341 aaaatggagt atatgtaata gcaccaaatc aagtaggaaa tatattttgt ggaagaagta
     2401 tgatagtaga tcctttggga tctattctta ctgatttagg cgataagtca ggaatcgaaa
     2461 ttgtggagat tcaaagagaa agaatagacg aagtaaggaa gacgttacct ttattaaaga
     2521 atcgaaggac tgatatttat aatattaata tcttaaatta atcttgtagg gcaattaata
     2581 tttgtacaaa agtttttact gtatctttta gttggataaa acacatttag tattggccaa
     2641 ttgcaatctt tacagatttt atttgtattc tttatggaac cttgttgcgg aattggggca
     2701 gatgcagtgc aaccatcgga aaagtaacca gagcacgaaa taaatcgttt tttggttttt
     2761 ttagatctta taatttgaaa ctttcctttt tgacaaacag gacaagctcc tatcaacata
     2821 aaattattgc tcctaatcgg ttgatattca attggcgata tacattctat tttttgaata
     2881 tgatacatag aatcaattag atcactaatt atactattta gtatgaatat tcgatctgta
     2941 attccttttt caatatcttc taaataatgt tctaaagctc tggtcaaatc tgtagaaact
     3001 atctttggaa ggtttttttc cataaaatct attaaaaata ttccaagatc atttgatttt
     3061 atatttttat aattatttac agttacataa tttcttcgta tcaataattc tataatattc
     3121 cctcttgtag attttgtgcc tatttcttct aattccattt tagataataa agatgaataa
     3181 ttgaaataga ctggagggtc agtcaatctc gaatctttaa taatatctat gttagtcaat
     3241 gtatctccta ttttaagatc tgaatagtca atagagttct cactataatt ataaaatgaa
     3301 ttataaaatt caatccaccc ttttaaaagt atattttttc cttctttatt aaataaaaat
     3361 ttatcatcta ctagaatatc aattttaatt tttttaaaaa ttgcagtttc accaaatgta
     3421 gtaaaaaa
//
LOCUS       DATCMF010000044         2238 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_533668, whole genome shotgun sequence.
ACCESSION   DATCMF010000044 DATCMF010000000
VERSION     DATCMF010000044.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2238)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2238)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2238
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_533668"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            68..1192
                     /locus_tag="VIL14_00550"
     CDS             68..1192
                     /locus_tag="VIL14_00550"
                     /inference="COORDINATES: protein motif:HMM:NF012336.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiolase family protein"
                     /protein_id="HEY8522225.1"
                     /translation="MVGGVTSEFRKGTDIDIVHIALESALKLLKDTGFPRNLIDAVIV
                     SSCSPDQYLSSVIAEIVGVTPKISHRIDNLCNSGTNAIISAFSYIASGLCDSALIIGV
                     EKSNTTGKIFSNDFSRGQYNLPIFWGSIFKKIHMKRYGSTEEQICQIPVNNYRKAKKN
                     KNAINRSISVKLEQVLNSRVLVEPLKLLECCTICEGSSSILLIADEKFSFFKSQITSN
                     KRNCELIPVLIKGIGQQTNCASFSNAITDIFAEGSARMAAQQAYKMARISPKEVDIAE
                     IHDAFSILEILGYEDLGFVNKGEGGTFVNQNKIAINLRGGIIGCGHPIGVTGIAQAVE
                     IFEQLGKKGRNLKLNKSPRIGVVHNLAAAGTSGTVIIMEG"
     gene            1273..1617
                     /locus_tag="VIL14_00555"
     CDS             1273..1617
                     /locus_tag="VIL14_00555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HEY8522226.1"
                     /translation="MEYIQSGRFVLPYCNKCRKTIWPPADNCRLCLNNLSLKDYKHKK
                     GKILEFFLDKFSSSNANTIMILVELDEVILIGSLDQDKINTVNIEGKKVRMKKCGFIN
                     QKIFYCFEIVSN"
     gene            1657..2019
                     /locus_tag="VIL14_00560"
     CDS             1657..2019
                     /locus_tag="VIL14_00560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522227.1"
                     /translation="MSYDRFVDERLLTSRDALNKYQMKIKLQDIDENARDYSQRFGNR
                     ILVRKIILMTKHNSTQEIEEIELDVEELEKRIKRERLFSSSNRWVAQNEIKNGYIVAT
                     RHLDLLADAIALDVIVFD"
BASE COUNT          827 a          297 c          393 g          721 t
ORIGIN      
        1 agttggaaat aatccagaaa attcaattag ggaattaatc tctacatttt aattgagaaa
       61 agtttcggtg gttggaggtg tcacaagtga atttagaaaa ggaacagata ttgatattgt
      121 ccatattgca ttagagtctg cgctgaagtt attgaaagat acaggatttc ccagaaactt
      181 gattgacgct gtaatagtat cctcatgttc ccccgatcaa tacttatcca gtgtaatagc
      241 ggagatagtg ggggtgacac caaagatttc acacagaatt gataatttat gtaattctgg
      301 tacgaatgca ataatttctg cattttctta tatcgcctca ggcttatgtg attctgcctt
      361 aattattgga gttgaaaaat ctaatacaac agggaaaatt ttttcaaatg atttctcaag
      421 gggccaatac aatctgccaa tattttgggg ttcaatattt aagaaaattc atatgaaaag
      481 atatggatca accgaagagc aaatctgtca aattcctgtt aataattatc gtaaagcaaa
      541 gaaaaacaaa aatgccatta ataggtccat ctctgtaaag cttgaacaag ttttaaattc
      601 aagagtacta gttgaaccac ttaaattatt ggaatgttgt actatttgtg aaggtagttc
      661 ttcaattttg cttatcgcag atgaaaagtt ttcatttttc aaatctcaaa taacatcaaa
      721 taaaagaaat tgtgaattga ttccagtatt aatcaaagga attggtcaac aaaccaattg
      781 tgcaagtttt agtaatgcaa ttactgatat ttttgccgaa ggttcagctc gaatggcagc
      841 acaacaagca tataaaatgg ctcggatttc ccctaaagaa gtggatatcg cagaaatcca
      901 tgatgctttc tctatcttgg aaatacttgg ttatgaagat ctgggttttg tcaataaagg
      961 ggagggaggg acatttgtta atcaaaataa aattgctata aacttaaggg gagggataat
     1021 tggatgtggt catccaatag gagtcactgg aattgcacaa gctgtagaaa tttttgaaca
     1081 attagggaaa aagggtcgta atttaaaatt aaacaaatct cctcgcatag gagttgttca
     1141 taacttagct gctgccggaa cttcagggac agtcatcatt atggagggct aaatttttaa
     1201 catattctga catattcctt gaaccaaaac aaaaaaatcc tgtatacaaa aaaaaataat
     1261 catcaaaaat ttatggaata tatacagagt ggaaggtttg tgcttcctta ttgtaataaa
     1321 tgtagaaaga ctatttggcc tcctgcagac aattgtagat tatgtctgaa taatctttca
     1381 ttaaaagatt ataaacacaa aaaaggaaaa atcctggaat tttttcttga taagtttagt
     1441 agtagtaatg caaatacaat aatgatatta gtagaattag atgaagtaat acttattgga
     1501 tctctagatc aagacaaaat aaatactgtt aatattgaag gaaaaaaagt aagaatgaaa
     1561 aaatgtggat ttattaatca aaaaatattt tattgcttcg agattgtgag taattaatat
     1621 attaattaat atatctattt gcttatttta tttttattga gttacgatcg ttttgtagat
     1681 gaaagactgt tgactagtag agatgcatta aataaatatc agatgaaaat taagttacag
     1741 gacatagacg agaatgctcg tgattattct caaagatttg gcaataggat tttagtacga
     1801 aaaataattt taatgacaaa acataacagt acacaggaga ttgaagaaat tgaacttgat
     1861 gttgaagaat tggaaaaaag aataaaaaga gaacgtcttt tttcctcgtc aaaccgatgg
     1921 gtagcccaaa atgaaataaa aaatggttat atcgttgcaa caagacacct agaccttttg
     1981 gcagatgcaa tagcattaga tgtaatagtt tttgactaat ttcttttatc cttatttaaa
     2041 gaatatatgt aattttacta attttataaa gtaatcttgt taattagaga agagattatt
     2101 gtgaattcaa tcttttctta ttcattatta ttttcgcaaa tcccaatgcg attaaaattc
     2161 ctcccagtaa tactgtaaaa ccaactgttc ttaaagattc ttggttagac tcaactacat
     2221 tcatagaaac tacgataa
//
LOCUS       DATCMF010000045         1990 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_335060, whole genome shotgun sequence.
ACCESSION   DATCMF010000045 DATCMF010000000
VERSION     DATCMF010000045.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1990)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1990)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1990
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_335060"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            460..1047
                     /locus_tag="VIL14_00565"
     CDS             460..1047
                     /locus_tag="VIL14_00565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522228.1"
                     /translation="MHGKSNKMKLSNPTVVVVVLILMSFTMVIFFPVVSEQQQQGEPP
                     SVLKLAKANVSIDIPISKGYIDGNIAYFIATDASDKHAVSSITNNTGFPVNYAPLLNN
                     TSESIRGQGYVFLNGVQGEAPGGFQLPVANAVPGDGDYSPIWQTNFVKWNDNATAREL
                     KSVEEIIAAQKNGELTITETNIIVNSPAIKWKDGS"
     gene            1438..1854
                     /locus_tag="VIL14_00570"
     CDS             1438..1854
                     /locus_tag="VIL14_00570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522229.1"
                     /translation="MTQHRPTGITIISVLMIIGGLILLFTGITPLFIGPLISIDSDSS
                     TSELGFLIAIGGLVLVALGIASLVVSWGLLKGKGWARTITLIISIIAIIFAIISLASS
                     GDLIHIISVIIYGIIIYYMFTKKVKLFFGKVKEPTT"
BASE COUNT          753 a          244 c          284 g          709 t
ORIGIN      
        1 attcatttgt aatttagtta ataatttaat atcaaaatcg aaattgaaat attaaaggag
       61 aatttaggtt atcggtattt ctattttaac taaattattt tattatttaa aattagcttt
      121 attagtcaat attaaatttg catgtaatag gatagaatag ttattagaaa tagatttact
      181 atccaaaatc ataatattat tataaatatt aaatatgtta atttgataat gttgcattct
      241 tataaaatag ctattaattg gtaaaaagga tttatttcga aatttaccat ttaattcaga
      301 tagatataaa tttgaagaaa taatacgaat gaaagacata gtcataacct ataaagtatc
      361 tgaaaaattg atatctaata ttttcgaaca aaaagaataa ttcgattaat aaagaatatt
      421 gttaataata agtaagaatt atttgataat gttttcatga tgcatggaaa atcaaataaa
      481 atgaaattat ccaatcctac agtcgtagta gtagttctga ttttgatgtc atttaccatg
      541 gttattttct ttcctgtggt atcagaacaa caacaacaag gtgaaccgcc ttctgttttg
      601 aaattagcaa aagcaaacgt ttctatagat attcccatat ctaagggcta catagatggc
      661 aatatagcat actttattgc taccgatgct tctgacaaac atgctgtatc ttctattaca
      721 aacaatactg gttttccagt aaattatgct ccacttttga acaatacatc agaatcaatt
      781 cgtggccaag gctatgtatt tttaaatgga gttcaagggg aagcaccagg aggatttcaa
      841 cttccagttg caaatgcagt accaggagat ggagattaca gcccaatatg gcagacaaac
      901 tttgtgaaat ggaatgacaa tgcaactgca agagaattaa agtctgtaga ggaaattata
      961 gctgctcaaa agaatggaga acttaccatt acagaaacaa atatcattgt aaatagtcca
     1021 gctattaaat ggaaagatgg ttcataacaa gtaaattaaa tattaaaata aattaaagga
     1081 aaaaatataa tgaaatccct tctttttatt ttgacacgat atattgaatt ataaatgatt
     1141 aactattctc atctattagc atactaaatt tgtattcatc ttattattac aaatagttta
     1201 gtattaaatt tttatacttt ccgaagtata taaaatctaa atagtttcta ataataaaag
     1261 ctaaatatta gtgaggtgaa ccctaccaca tggcaaattc ctctcttagt actagactat
     1321 cgtgatagtg attaaattaa ttgactatga aatagaaaat acaatttttt aactttttgt
     1381 tgaaattaat taaataattc aagtaatact tatattcaac caaaatttaa tcaatatgtg
     1441 actcaacatc gtccaactgg aattactata atatcagttc ttatgataat aggtggatta
     1501 atcctattat ttactggaat tactccttta tttataggtc cattaattag cattgattct
     1561 gattcttcaa ctagtgaatt aggatttctt attgcaatag gtggtttagt attagtagca
     1621 ttaggaatag caagtttagt tgtttcatgg ggattgttaa aggggaaagg atgggcaaga
     1681 acaattacac tcataatcag cataattgca ataatatttg ctattatttc tcttgcaagt
     1741 agtggagatt taatacatat tatttcagta ataatatacg gtataataat ttactatatg
     1801 tttacaaaaa aagtaaaatt attttttggt aaagttaaag agccaactac ctaacctttt
     1861 tcaaacttat aatctgtgtg gcttttatga taagaaaatt tttactgaca acaagttttt
     1921 ttaccttgat tttaatattg tttttagtaa actctgccaa taatgtaata tcaattagtg
     1981 aaggagagaa
//
LOCUS       DATCMF010000046         2470 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_5590, whole genome shotgun sequence.
ACCESSION   DATCMF010000046 DATCMF010000000
VERSION     DATCMF010000046.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2470)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2470)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2470
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5590"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..277
                     /locus_tag="VIL14_00575"
     CDS             <1..277
                     /locus_tag="VIL14_00575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522230.1"
                     /translation="EILAKMRDSVEQGDVQATIGYFDKLINPSVHGSTMIEKFFNEHR
                     DLRLYQNRLKDKGQEYLNSHKSDFIKLMIEIDSKVRGTHFSNNVIDN"
     gene            351..1151
                     /locus_tag="VIL14_00580"
     CDS             351..1151
                     /locus_tag="VIL14_00580"
                     /EC_number="2.4.2.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfide-dependent adenosine diphosphate thiazole
                     synthase"
                     /protein_id="HEY8522231.1"
                     /translation="MPKIFADVSEKEISRSIAAMFMETMNEYTDSDVIIIGAGPAGLS
                     AGRDLGKLGIKTLIIEQNNYIGGGYWVGGYMMNPVTVRSPAQKIWDELGVPYRVIREG
                     LYATWGPHACSKLIAATCDAGVRFLQLTKFDDLVIKNKRVAGVVVNWMPVSALPRNIT
                     CVDPIAFESKIVIDASGHDSVAVKRLMERGYVKWKGMDPMWVEGGEDAVVNHTGEVFP
                     GLIATGMSVTETHGLPRMGPTFGSMLLSGKKAADIAARKLKEVPQIPN"
     gene            1220..2077
                     /locus_tag="VIL14_00585"
     CDS             1220..2077
                     /locus_tag="VIL14_00585"
                     /inference="COORDINATES: protein motif:HMM:NF042804.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6775 family putative metallopeptidase"
                     /protein_id="HEY8522232.1"
                     /translation="MLYCKYINFFNESSWPEVNIQKIIACLKKILPNNVIEKQKGSLL
                     YLKSRDKEKNFSFYKQAIVQDLKKPLYIYDLNYYHSSYHYKEKNVITSNKKIESVDLL
                     LYDGFLVQKLVQKLIKKYEQALTFSKLEIIVTDKLLCTFDESDWRYHARSLICGNPTL
                     ISTSGIVEGIAKPRDYYYKLYFFKENRDMVDELKKEYNGQFINYNDPRINDIIEGLVL
                     QSLFYFINSGDPFCHDRNCRFFNAHFQDDVIRINIKEKKICQRHKFLLNKYNQSLFLN
                     NDCSQNVEE"
     gene            2135..>2470
                     /locus_tag="VIL14_00590"
     CDS             2135..>2470
                     /locus_tag="VIL14_00590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEY8522233.1"
                     /translation="MQVHEEKKENAYDSEDASNNQTLRTFDVIIIGSGPAGYTAAIYT
                     ARAKLKTLIISGSLPGGQLMTTSEVENYPGFPNGIFGPELMMNMRQQAERFGSIIVDD
                     EVIEVNFKQK"
BASE COUNT          890 a          344 c          449 g          787 t
ORIGIN      
        1 tgaaatatta gctaaaatga gagattctgt agaacaaggt gatgtccaag caactattgg
       61 atattttgat aaattgataa atccttctgt tcatggaagt acaatgatcg aaaaattctt
      121 taatgaacat agagatttaa gactgtatca aaatcgcctt aaagacaaag gccaagaata
      181 tttgaattct cataaatctg attttataaa gttgatgata gaaatcgaca gtaaagtgag
      241 aggcacccat ttctctaata atgtaatcga taattaaaat taatttttat tatgtgactt
      301 tggagattaa atgcattagt aatatataat gtgcttatcg tgataatagt atgccaaaaa
      361 tatttgctga tgtcagcgag aaagaaatta gtcgttcaat tgctgcaatg tttatggaaa
      421 caatgaatga atatacagac tctgatgtta ttattattgg tgctggtcca gctggtttat
      481 ctgccggcag ggatttaggc aaattaggaa ttaaaacctt aattatagaa caaaataact
      541 acattggcgg gggatattgg gtaggaggtt atatgatgaa ccctgtgact gtaagatccc
      601 ccgcccaaaa gatttgggat gaattaggag ttccctatcg agttataaga gaagggctat
      661 atgctacatg gggtcctcat gcttgttcca agttaatagc cgcaacatgt gatgcaggag
      721 tacgattttt gcaattaact aaatttgatg acttagtaat aaaaaataag cgtgtcgcag
      781 gggtagtagt taactggatg ccagtttctg cattaccaag aaacattact tgtgtagatc
      841 caattgcatt cgaaagcaag attgttattg atgcatcagg tcatgattct gttgccgtaa
      901 agagattgat ggaaagaggt tatgtaaaat ggaaaggcat ggatcctatg tgggttgaag
      961 gaggagaaga tgcagtagtt aaccatactg gtgaagtgtt tccaggtcta attgcaacag
     1021 gaatgtcagt aactgaaact catggacttc cacgaatggg tcctacattt ggttcgatgt
     1081 tattatcggg taaaaaggct gctgacattg ctgctcgcaa gttaaaagaa gtaccacaaa
     1141 ttccaaactg aaaaacgaat aaattcttct tctttttctt ctgcttctgc ttctgttttt
     1201 ccatcaatta tcattcacta tgttatattg taaatacatt aatttcttta acgaatcatc
     1261 ttggccagaa gtaaacatac aaaaaattat agcttgtcta aaaaaaatat tacccaataa
     1321 tgtaatagaa aaacagaaag gatctctatt atatttaaag tcaagagata aagaaaaaaa
     1381 cttctcattt tataagcaag cgattgttca ggacctaaaa aaaccattat atatttatga
     1441 tttgaattat tatcattctt cctatcatta taaagaaaaa aatgtcatta catccaacaa
     1501 aaaaattgaa agtgtggatc tcttgttata tgatggattt cttgtacaaa aattagttca
     1561 aaaattaata aaaaaatatg aacaggcatt aacattctca aaacttgaga ttatagtaac
     1621 tgataaatta ttatgcacat ttgatgagtc ggattggaga tatcatgcta ggtcactgat
     1681 ttgtggaaat cccactttga tttctacttc tggaattgta gagggaatcg ctaaacctcg
     1741 cgattattat tataaattat atttttttaa agaaaaccgt gatatggtgg acgagcttaa
     1801 aaaagaatac aatggacaat ttataaatta taatgatcca cgaataaatg atattattga
     1861 aggtttagtt cttcaatcac ttttttattt tatcaattca ggagatcctt tttgccacga
     1921 tagaaattgt agatttttta atgcacactt tcaagatgat gttattagaa taaatataaa
     1981 agagaaaaag atatgccaaa gacacaaatt tctcctaaat aaatataatc aaagcctttt
     2041 tcttaataat gattgttcgc aaaatgtaga agaatagaaa caatataacg aaccaattat
     2101 taactggtct ttatttttat ctataacata cagaatgcaa gtccatgaag agaagaagga
     2161 gaatgcttat gacagtgaag atgcctccaa taatcaaaca ttaagaactt ttgatgttat
     2221 tataattggt tctggtcctg ctggctacac tgcagcaata tatacagctc gtgctaaact
     2281 aaagactttg attatatctg gaagtttacc tggcgggcag ttaatgacaa ctagcgaagt
     2341 tgaaaattac cctggatttc cgaacggcat ttttggacct gaattaatga tgaatatgag
     2401 acaacaagct gaaagatttg gttctattat tgttgatgac gaagtaatag aagttaattt
     2461 taaacaaaaa
//
LOCUS       DATCMF010000047         2070 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_5916, whole genome shotgun sequence.
ACCESSION   DATCMF010000047 DATCMF010000000
VERSION     DATCMF010000047.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2070)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2070)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2070
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5916"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..795)
                     /locus_tag="VIL14_00595"
     CDS             complement(<1..795)
                     /locus_tag="VIL14_00595"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEY8522234.1"
                     /translation="MLCLTITFIVIFTSPSFSGFASTENNTLTQSQGIQGLTKNTTNI
                     VLVHGFWADGSSWSKVIPILHNAGHKVIAVQLPLHSLVDDIATVNRAIELLGGPTILV
                     GHSYGGIVITNAGYNNPNVKGLVYVAAFAPNEGQSLGDFFDVSKLPKDFFKADSGGFA
                     YINPNLFHDMFAQDVDQAQADIMATTQKPPSLSSILPEKSGPPAWKQLPTWYQVSGND
                     RMIPPDVERMFAKQINATTITINASHVPFISHPVETAELILNATKER"
     gene            983..>2070
                     /locus_tag="VIL14_00600"
     CDS             983..>2070
                     /locus_tag="VIL14_00600"
                     /inference="COORDINATES: protein motif:HMM:NF019474.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEY8522235.1"
                     /translation="MKIRLALYFSAIIIIITTFGICGSLFLNSNSPLVYGMESSNYST
                     VEKNTKLFLEKLQQSGDPPIYTLPPTEARKVLSGLQTSSLEKVPPAENPPAEIENKTI
                     PGGPNGEISIQIVKPPGSGNKTLPVVMYFHGGGWVLGGFDTHERLLRELANGAHAAIV
                     FVNYTLSPEAKYPQSLEEAYAATKWIAENGQTFNLDTSRLAVAGDSVGGNMATSVALL
                     AIERGGPPITFQLLFYPVTDANFDTPSYLKYQEGYWLARDGMKWFWSNYLSNDTNRKE
                     PTVSPLQASIDQLSKLPPALIIVGENDVLRDEGEAYAHKLMQAGVPTTATRYLGTIHD
                     FVMLNPITDTPAPRAAIDQASNTLKEVFS"
BASE COUNT          644 a          382 c          410 g          634 t
ORIGIN      
        1 tctttctttt gttgcattta agattaattc ggcggtctca actggatgtg atataaatgg
       61 tacatggcta gcgttgattg ttatagtggt agcattaatc tgctttgcaa acatgcgttc
      121 aacatcagga ggaatcatgc ggtcgttccc tgatacctga taccatgttg gaagttgttt
      181 ccaagctgga ggcccagatt tttcaggaag aattgatgat aggctaggtg gcttctgcgt
      241 agtcgccatg atgtcagctt gagcctgatc tacatcttga gcaaacatat cgtggaatag
      301 gtttgggttt atgtaggcaa atcctccact atcggcttta aaaaagtctt ttggaagctt
      361 actgacgtcg aagaaatctc cgagagattg gccctcgtta ggagcaaatg cagcgacata
      421 aacaaggcct ttgacattgg gattattata accagcattc gtgattacta ttccgccata
      481 tgagtgtccc acaagaattg ttggtccacc aagcagctca attgcacggt ttacagtagc
      541 gatgtcatct accagagaat gaagaggaag ctgtacagca ataactttgt gtcctgcatt
      601 atgtagaatt ggaattacct tgctccatga agatccgtca gcccaaaagc catggactag
      661 aacaatatta gtagtatttt ttgtcaaacc ctgtattcct tgagattgcg ttaatgtgtt
      721 gttctctgtg ctagcgaagc cagaaaatga aggggatgta aagattacaa taaaagtaat
      781 agtcagacat aacaaaggta aaaacttgac tttttgatta aatttttgca tttatataaa
      841 tatattttca taagattagg tcacttataa agtagtatgt ttagtaaaat ttttatgaag
      901 atctcaatat ggttgacaga atacaaatag tttttaatga ttttataaaa gcttaaataa
      961 ataaatgcat acttcaaagt aaatgaaaat cagacttgct ctgtattttt cagcaattat
     1021 aataataata acaacatttg gcatttgtgg ctcactcttt ttaaatagta attctccatt
     1081 agtatatggc atggaatctt ccaactattc taccgtagaa aaaaatacta aattattttt
     1141 agagaagctc caacaaagtg gtgatcctcc aatctatact ttgccaccta cagaggctcg
     1201 caaagtacta tctggacttc aaacatcttc actagaaaag gttcctcctg ctgaaaatcc
     1261 tcctgctgaa attgagaata aaactattcc aggaggtcct aatggcgaaa tatctattca
     1321 gatagttaaa ccaccaggta gtggcaacaa aaccctacct gttgtaatgt acttccatgg
     1381 tggtggatgg gttcttggag gttttgatac tcatgagaga ttgttaaggg aacttgctaa
     1441 tggcgcacat gcagcaattg tatttgttaa ctatacgctc tctcctgaag caaaatatcc
     1501 acaatctcta gaagaagcat atgctgctac aaaatggatt gcagagaatg gtcaaacttt
     1561 caatttagat acttcacgtc tagccgtagc aggtgatagt gtagggggca acatggccac
     1621 ttcagttgca ctgcttgcta ttgagcgtgg tggtcctcct ataacattcc aactgctgtt
     1681 ttatccagtt acagatgcaa actttgatac cccatcatat ttgaaatatc aggaaggtta
     1741 ttggcttgct cgagatggaa tgaaatggtt ttggagtaat tatctttcca acgacactaa
     1801 tagaaaagaa ccgactgtat ctccactgca agcatcaatt gaccaactca gtaaattacc
     1861 acctgcactc attatagtag gagaaaatga tgttctacgt gatgaaggtg aagcctatgc
     1921 tcataaacta atgcaagctg gagttcctac gacagcaact cgttatctag gtactataca
     1981 tgattttgtg atgttaaacc ctattactga tactcctgca ccaagagctg cgatagatca
     2041 ggcatctaat acacttaaag aggtattttc
//
LOCUS       DATCMF010000048         1530 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_603195, whole genome shotgun sequence.
ACCESSION   DATCMF010000048 DATCMF010000000
VERSION     DATCMF010000048.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1530)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1530)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1530
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_603195"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            173..1090
                     /locus_tag="VIL14_00605"
     CDS             173..1090
                     /locus_tag="VIL14_00605"
                     /inference="COORDINATES: protein motif:HMM:NF019884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH domain-containing protein"
                     /protein_id="HEY8522236.1"
                     /translation="MYKRYTIDEIKNKVIETLGNHEEGMSSMELADAIHVNRMTITKY
                     LNVLSAIGLIKKKKIGSINIWTRESGVDDIEFPLNYIHIQQKFLTALLGYNKRESSKI
                     LLNTIYSESEILKVLKEIIIPSLNTINEIYNRGRLGKTELIYLNNLLFDLLIVIEIYY
                     KNIEHNKNIHNIFIAGNEDQILYSKILSLVSEVSNSDTIYLGNIGQHIDPFFDIDLQR
                     YITKFWSHKKGTKIIFLCCSDESSLKFLFSTADYIKRKMTEIIKIVLFVNPEILNLTK
                     DLKFDFIASDLTSLIIWLEELIKQIRTKF"
     gene            complement(1125..>1530)
                     /locus_tag="VIL14_00610"
     CDS             complement(1125..>1530)
                     /locus_tag="VIL14_00610"
                     /inference="COORDINATES: protein motif:HMM:NF013429.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase family
                     protein"
                     /protein_id="HEY8522237.1"
                     /translation="SFSKDFGVYLLLEPLNRYSTPFCCNAADAIYVTSTINDEYFSIL
                     LDTYHMNIEEMDFSDSITKSKNFLKHIHFADSNRKMPGLGHINFNSILKTLRKIQYNN
                     YIGLEPIVDRNYKVEIRQGLNFLNKLCNKYKI"
BASE COUNT          610 a          173 c          196 g          551 t
ORIGIN      
        1 tgaataggct aaaatgcatt tttctttaac catcgttagc cgatgcgaat atagttatta
       61 tatttatatt tttggattcc gttaatcatt aaatttagtt atttattaaa tttataaaaa
      121 aaattataat aaaaaacgat aaatgttatt ttattaaata tatgttgaaa atttgtataa
      181 aagatataca atcgatgaaa taaaaaataa agtcattgaa acattgggaa accatgaaga
      241 aggaatgtct agtatggaac tggctgatgc cattcatgtt aatagaatga caataacaaa
      301 atatcttaac gttttatcag caatcggttt aataaaaaag aaaaaaattg gttcaattaa
      361 tatatggaca agagaatcag gtgtagacga tatagaattt cctttgaatt atatccatat
      421 acaacagaaa tttttaactg cattgcttgg atataataaa agagaatcaa gtaaaatact
      481 acttaatact atttattcag aaagtgaaat tttaaaagtt ttaaaagaaa taatcattcc
      541 ctcattaaat actatcaatg aaatttataa cagaggtaga ttaggtaaaa cagagcttat
      601 ttatttgaat aacttattat ttgacctttt aattgtaatt gaaatatatt ataaaaatat
      661 tgagcataac aaaaatatcc acaatatttt tattgctgga aatgaagatc agatattata
      721 ttcaaagata ttatcattag tctctgaagt ttcaaatagt gatactatat atcttggaaa
      781 tatagggcag catatagacc ctttttttga tattgattta caaagataca taactaaatt
      841 ttggtctcat aagaaaggaa caaaaattat ttttctatgt tgctcagatg aaagctctct
      901 gaaattttta tttagtactg ctgattatat aaaaagaaaa atgaccgaaa ttataaaaat
      961 agtattattt gtaaatccag aaatattaaa tttgacaaag gatttgaaat ttgatttcat
     1021 tgcatcagat ctcacttcat taattatatg gttggaagaa ttgattaaac aaattaggac
     1081 gaaattttaa gctatttctt caaaagaatg tataataaat aatatcatat cttatattta
     1141 ttacaaagtt tattcaaaaa atttaatcct tgccggattt caactttata atttctatct
     1201 actataggtt ccaaaccaat gtaattatta tattgtatct tccttaatgt ttttaatata
     1261 gaattaaaat taatatgccc taatcctggc atttttctgt tgctatctgc aaaatgaata
     1321 tgttttaaaa aattttttga ctttgtgata ctatcagaaa aatccatttc ttcaatattc
     1381 atatggtaag tatccaatag gatggaaaaa tactcatcat taatagtgga tgtaacatat
     1441 attgcatctg ctgcattaca acaaaagggt gtagaatacc tatttaatgg ttctagcaaa
     1501 aggtatactc caaaatcctt tgaaaaacta
//
LOCUS       DATCMF010000049         3420 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_6292, whole genome shotgun sequence.
ACCESSION   DATCMF010000049 DATCMF010000000
VERSION     DATCMF010000049.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3420)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3420)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3420
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_6292"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(142..1749)
                     /locus_tag="VIL14_00615"
     CDS             complement(142..1749)
                     /locus_tag="VIL14_00615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY8522238.1"
                     /translation="MSNKQADNNNNNERTSSDNETNNNNNFRNNNNSGSNAKNLEFAT
                     SKKNLILNNNKGDKYNENINNDLTFISKFIRSKSGIAGVVILLILVSMTLYAFFGIPF
                     ASFKEWNNPNYWIDNPRLASPIWSDFFGFFGRNIPEHLILSSSIDNNDRTSSKNKVTI
                     YTTNENGITVVTHSYHINYNSDIPPNDFMITYSLHKEEIPPAIEIELIRPNKNKFDIY
                     FDSITPSVSGSNESITLGRIFSTDSLIHQKLLDYLKFYDYKQETSKPEIMLFSNQDKR
                     SIMKGNYTFNVKFYLFNSEDKILNSKLILGGEKFGLMGTDELRRDLTVGLVWGAPVAF
                     FIGLSVSTISIVIGMIYGVIAGYKGKRTDESLMRINDIFYSLPTLPLLIILSLFIGRS
                     IFLIVLFLIFFGWMGTAKISRSLALQIKNLQYVEAAKLIGQSDIKIIFKHIIPQLLPL
                     TFASIAISVPGAILAEASLSFIGLGDPSIPTWGQILHEAHTAAAASRGLWWWLIPPGM
                     LIALTGLAFVLIGNTIDSILNPKMKRM"
     gene            complement(1742..2692)
                     /locus_tag="VIL14_00620"
     CDS             complement(1742..2692)
                     /locus_tag="VIL14_00620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY8522239.1"
                     /translation="MDNVIKDSVKYSVIDSLSNQKIEFKDITERQRYIDQQIQLQIKN
                     LGLEEPWYSPNRFFNTLLKVMVLDLGKSNFFVSDSGSSSVKDIIIEKIPKTLLLFTTA
                     TIVIALMGVYLGVFLASRAESKLDRTNSIFAIFGNSIPVWWFGMIMIFIFAFSLNIFP
                     ARSTPLTPPDDPFYFFDLLYHMILPFITIVILGFGSVAYIVRHIVSGILQEDFIKAKF
                     AMGIPKKKILYSHALKNAAPPIVTMIALGLAGSFGGAFTVEVVFDWPGMGKLYFDAIG
                     LMDVPIIIGLTYVSTLIFLVTVFFIDLIYAYFDPRVKLNE"
BASE COUNT         1230 a          504 c          520 g         1166 t
ORIGIN      
        1 cattaataag tagttataga ccttttcagt gaatacaatc attcattatc attagatttt
       61 cacacataaa ttttttttta tgatattaga ttgagcacaa tacatgataa taaaaaagga
      121 ggagaaatct atccattgta gttacattct tttcatcttg ggattcaaga tagagtctat
      181 tgtatttcca ataagaacaa aagctagtcc tgttaaagca attaacatac caggagggat
      241 taaccaccac cataggcctc tagaggcagc tgcggcggtg tgagcttcat gaagtatttg
      301 accccatgtt ggaatagatg gatcccctag accaatgaag ctaagagaag cctcagctag
      361 aattgctcct ggaacggaga tagcaatgct tgcaaaagtt aaaggaagta gttgaggaat
      421 tatatgttta aagatgattt tgatgtcaga ttgtccaata agctttgctg cttcaacata
      481 ttgaaggttc tttatctgta atgctaaact tcgtgaaatc ttagcagtac ccatccatcc
      541 aaaaaatatt aaaaataaaa caataagaaa gatacttctt ccgataaata aagataaaat
      601 aatcaaaagc ggcagagtag gtaaagaata gaaaatatca ttaattctca ttagactttc
      661 atctgttctt tttcctttgt aaccagcaat aacaccatag atcatgccta ttacaatgga
      721 aattgtagaa acagataaac ctataaaaaa agcaacaggc gccccccaca ccaatccaac
      781 cgttaaatct ctacgtaatt cgtcggtgcc cattaatcca aatttttctc ctccaagaat
      841 taatttagaa tttaaaattt tatcttcact attgaagaga taaaatttaa cattgaaagt
      901 gtaatttcct ttcataattg atcgcttatc ctggtttgaa aataacatga tttcaggttt
      961 tgaagtttct tgtttataat cataaaattt taagtaatca agtaattttt gatggattaa
     1021 actatctgtg gaaaatattc ttcccaatgt tatgctttca tttgaaccag agactgatgg
     1081 agtaattgaa tcgaaataaa tatcaaattt atttttgttt ggtcttatta attctatttc
     1141 aatggcagga ggaatttctt ctttatgtag tgaataggtt atcataaaat cattgggtgg
     1201 aatatcagaa ttataattaa tatgatatga atgggtaacg acagtaatac cattttcatt
     1261 tgtggtatat atggttactt tatttttgct actagtcctg tcattattat caatagaaga
     1321 agaaagaatt agatgttctg gtatgtttct tccgaaaaat ccaaaaaaat cactccatat
     1381 tggtgatgca agcctaggat tatcgatcca ataattgggg ttgttccatt ctttaaaaga
     1441 tgcaaacggt ataccaaaga aagcatagag ggtcatagat accaaaatta aaagaataac
     1501 tactcctgcg ataccgcttt tgcttcgaat aaatttagat ataaaagtta aatcgttatt
     1561 tatattttca ttatatttat cacccttgtt attatttagt attaaattct tcttagaagt
     1621 agcaaattct agatttttgg cattcgaacc ggaattattg ttattacgga aattattgtt
     1681 attgttagtt tcattgtcag aggaagtacg ttcgttattg ttattattat cagcttgttt
     1741 attactcatt taatttcacc ctaggatcaa aatatgcata aattagatct ataaaaaaaa
     1801 ctgttacaag aaaaattaat gtagagacat aagtgaggcc gataataata ggaacatcca
     1861 tcaatccaat agcatcaaaa tataattttc ccattcctgg ccaatcaaag actacttcaa
     1921 cagtaaaagc tcccccaaag gatccagcta gacctagagc tatcattgta actataggag
     1981 gagctgcatt tttgagggca tgcgaataaa gtattttctt tttaggaata cccattgcaa
     2041 attttgcttt gataaagtct tcttgtaata ttccagaaac tatatgtcta acaatatacg
     2101 caacggatcc gaatccaaga attacaattg taataaatgg aaggatcata tgatatagca
     2161 aatcaaaaaa atagaatgga tcatctggag gagttaatgg tgttgaacgg gccgggaata
     2221 tatttagcga gaaggcgaaa ataaatatca ttatcattcc gaaccaccag actggaatgc
     2281 tattaccgaa aatagcaaag attgaattgg ttctatccaa tttggattcc gcacgactag
     2341 ccaaaaaaac tcccaaataa acacccatta atgcaataac tattgttgct gttgtaaaaa
     2401 gtaaaagagt tttaggaatt ttttcaatta taatatcttt tacagatgat gatccggaat
     2461 cacttacgaa gaaatttgat tttccaagat ctaacaccat aactttgagt aaagtattaa
     2521 aaaatcgatt tggagaatac catggttctt ctaaccctaa atttttaatc tgcagttgaa
     2581 tctgttggtc gatatatctt tggcgttctg taatatcctt aaactcgatt ttttgattgc
     2641 ttaaactatc tataacactg tatttcacag aatccttaat tacattgtcc attgttgggc
     2701 ccagaagaga gatagttaga acgagaattg aaaataagac tataaacata ttgatgattc
     2761 ttttaaataa aaaaaacaag aatcctgagg tcatttatat tgagagtagt aatattcaat
     2821 aatattaata gtattgtcta atcaacagtt atcttataca tagtttgtgt aagaattatt
     2881 tatttataaa agttttattt gcgaagtatt tttggcatta ttaatttatt agaataaatt
     2941 ttattatatt tgatatattt aatatatttc atgaaatggt caagtattaa taatttaatt
     3001 ttaatatcgt ctacaaataa aaaagaacta atgtaaattt taataaaata ttattctatg
     3061 agatacaatt atttattgac tggtgcaatt caattctttc aattcaatca atataagcta
     3121 ttctcaaata ctcccacaga aaggagagta cttcttatta attccagtat atctaaaaaa
     3181 gatttgataa ttcatcacag taatatgtat ttgttatcat ctcctaatca aactcttgtt
     3241 aaagaatttt acaaggcgat aatttattgt atatttcata gtataagtgg ttttttttct
     3301 cgatattttt ctacaacaga tggatacatg atgagctgaa ctaatatatt aatagttgca
     3361 aaattgactg ttgcattatc gattgaggtt cacgtacaga attacacaaa actacaaaac
//
LOCUS       DATCMF010000050         1824 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_6447, whole genome shotgun sequence.
ACCESSION   DATCMF010000050 DATCMF010000000
VERSION     DATCMF010000050.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1824)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1824)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1824
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_6447"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(55..822)
                     /locus_tag="VIL14_00625"
     CDS             complement(55..822)
                     /locus_tag="VIL14_00625"
                     /inference="COORDINATES: protein motif:HMM:NF013256.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522240.1"
                     /translation="MERNNIKLHTQKVEKMKDATIHIVPHMHYDAVWILNKEDYYFVN
                     IEYILKQAINLIKKFDYKFMLEQTFLLEKIEKDYPHIFADISDLIKDNRIEIAGGQYL
                     LADNMVPNGEVLIREITEGKKFVKEKLNKDIIVSYGADEFGFNAQWPQILRNSGYKYF
                     IFRRGINISTPSEFFWEGLDGTQILTHWMPLGYRAGLFLDQLPLSLKQLKKYASTNQI
                     LMLSGSGSTPPQPELVDVISEWNKKVNGKKGTKSKSE"
     gene            complement(783..1625)
                     /locus_tag="VIL14_00630"
     CDS             complement(783..1625)
                     /locus_tag="VIL14_00630"
                     /inference="COORDINATES: protein motif:HMM:NF019887.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIB family hydrolase"
                     /protein_id="HEY8522241.1"
                     /translation="MIFSDIDNTLLQSYIIKEGEIYHTEDYGEIKEIVQRLRKNNVPL
                     VLCSSKTRVEQEKIRKYLEIEDPFIVENGGAICIPENYFPIDLEELGLSINRINENLI
                     IELGKSYNRIIETLQEIREIFHIEFIAVHDLSLPQLAQKVGITINDAKLMASREYSET
                     VLEFNNINELDKLKKILNDRGLRILQGTRYNTISSLHDKGSAISILKKLYAMKFEKEK
                     IESIGIGDAVNDIPMFENVDKPFLVRNIQNGYTPMKINNLIRVNGVGQTGWKEIILNY
                     ILKK"
BASE COUNT          564 a          291 c          231 g          738 t
ORIGIN      
        1 attttggttt tctaaataat taaaatattg aagaggagat gacataataa tattttattc
       61 acttttagat ttagttcctt tttttccatt taccttttta ttccattcac ttataacatc
      121 aactaattca ggttggggag gagtagagcc acttccagat aacattaaaa tttgattagt
      181 tgaagcatat ttttttaatt gttttaacga taggggtagc tgatctaaaa aaagtcctgc
      241 acgatatcct agtggcatcc agtgagtaag aatttgggtc ccgtcaagtc cttcccaaaa
      301 aaattctgat ggggtagaaa tatttattcc tcttctaaaa atgaagtatt tgtagccaga
      361 atttcttaaa atttgaggcc actgtgcgtt aaaaccaaat tcatctgccc catatgaaac
      421 tataatatct ttatttaatt tttcttttac aaattttttt ccttcggtta tttctcttat
      481 aagtacttct ccatttggaa ccatgttatc agccaacaaa tactgtcctc ctgctatctc
      541 aattctatta tccttgataa ggtcacttat atctgcaaaa atatgaggat aatccttttc
      601 tattttttct aataaaaaag tttgctctag catgaattta taatcgaatt ttttaataag
      661 atttatagct tgttttagaa tatattcaat gtttacaaag tagtaatctt ctttgttaag
      721 aatccatact gcatcatagt gcatatgggg aactatgtga atagttgcat ccttcatttt
      781 ctctactttt tgagtatgta gtttaatatt atttctttcc atcctgtctg tccaactcca
      841 tttactctga taagattatt tattttcatg ggggtataac cattttgaat atttcgtact
      901 agaaacggtt tgtcaacatt ttcaaacatt ggaatgtcat taactgcatc tcctattcct
      961 atagattcaa ttttctcttt ttcaaatttc attgcatata acttctttaa tattgaaatt
     1021 gcagagcctt tatcatgtaa agaagaaatt gtattatacc ttgttccctg taaaatacga
     1081 agacctctat cattcaatat tttttttaac ttatctaatt cattgatatt attaaattca
     1141 agtactgttt cgctatattc ccttgatgcc attagttttg catcatttat tgttatgcct
     1201 accttttgag ctaattgtgg caatgaaaga tcatgtacag caatgaattc aatatgaaat
     1261 atttctctta tttcctgaag agtttctatt attctattgt atgattttcc taattctata
     1321 attaaatttt catttatacg gttgattgat aaacctaact cttcaagatc tataggaaaa
     1381 taattctcag gaatacaaat tgctccaccg ttttcaacta taaatggatc ttcaatctct
     1441 agatattttc ttattttttc ctgttcgact cgagtttttg atgaacataa gaccaaagga
     1501 acattgtttt tacgtaatct ttgaacaatt tctttaattt ctccatagtc ttcagtatga
     1561 taaatttctc cttcttttat aatatatgat tggagaagtg tattatctat atcagaaaaa
     1621 atcaaatacc gtgacattct ttttacttta cttttgttaa atgaatgaaa tactttatac
     1681 tttaacgtaa gaaattatat aaaaattttc acgaatattt aatctctttt tagacaatct
     1741 gtatccaaaa aatcaacaat cttttatttt actatgagta tgtactattg cagcagttgt
     1801 tctcgactga tgtaaacaca gtgg
//
LOCUS       DATCMF010000051         1822 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_70928, whole genome shotgun sequence.
ACCESSION   DATCMF010000051 DATCMF010000000
VERSION     DATCMF010000051.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1822)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1822)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1822
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_70928"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(54..1082)
                     /locus_tag="VIL14_00635"
     CDS             complement(54..1082)
                     /locus_tag="VIL14_00635"
                     /EC_number="1.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004412 - homoserine dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine dehydrogenase"
                     /protein_id="HEY8522242.1"
                     /translation="MRIILIGYGIVGQSFTKLLLSKLVDLSNLYGMKPRIVACVDKNG
                     SAIDTSGLDIQRLLEIKKNKGTVGEYYRNKTSQLDPLQIIENIDAEVVMELTPTNLKD
                     GEPGLSHITSAMKYGKNVITVNKGPLSVAFPSLIELANYNGIMFKFSGTVGGGTPILE
                     FAKRCLKGDRIVSFKGILNGTTNFILSKMEEGLTFKEALKDAQVKGYAETVPSLDIDG
                     FDAAAKLVIMANWLMGMKVALDDVNRNGITKVKTQEVSKALKKGNAIKLIACCENKKL
                     VVKPMEVSKLDPICVNGTLNAVTFSLEYAGNQTIIGRGAGGIETASAVLRDMIEIREN
                     IINEKNLS"
     gene            1301..>1822
                     /locus_tag="VIL14_00640"
     CDS             1301..>1822
                     /locus_tag="VIL14_00640"
                     /inference="COORDINATES: protein motif:HMM:NF014035.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HEY8522243.1"
                     /translation="MIELFIILVIIGFGSGIIGSLIGVGGGIIMTPALTYMGFSPAVI
                     ASSSLIAVFATSLSSTITYIRKKYINYRLGLQLALPAIPGSIIGGFFSNFVSLDYFKI
                     YFAILLTSVGLYIFFKNKIINKTLNRTPKPLFYLILIFGTFGAGVISSFFGIGGGIIF
                     VPILVIIYKLKMIN"
BASE COUNT          569 a          308 c          262 g          683 t
ORIGIN      
        1 cctcaatcaa agcatttcag caggctagta cttcttttac ataaattaag aaattaagac
       61 aaattttttt cattgatgat gttttctcga atttctatca tatctcttaa tacagcacta
      121 gcagtttcga tacctccggc ccctcgtcca attattgtct gattgcctgc atactccaat
      181 gaaaaggtga cagcatttaa agttccattg acgcagatag gatctaattt tgatacttcc
      241 ataggcttta ctacaagttt tttgttttca cagcaggcaa taagtttgat cgcatttcct
      301 ttttttaatg ctttggaaac ttcttgagtc ttcacttttg taattccatt tctattaaca
      361 tcatcaagtg caactttcat tcccattaac caattagcca ttattaccaa tttcgcagca
      421 gcatcgaacc catctatgtc taaggagggg acagtttccg cataaccctt cacttgggca
      481 tcttttagcg cctctttgaa tgtcaatcct tcttccattt tactcaaaat aaaatttgtt
      541 gttccattaa gtataccttt aaaagaaaca attctatctc cttttaagca tctcttagca
      601 aattcaagaa tcggagttcc tccacctact gttccactaa acttaaacat tattccgtta
      661 tagttagcta attctataag agatggaaaa gctactgata atggtccttt attaactgta
      721 ataacatttt taccatactt catggctgaa gtaatatggg ataaacctgg ttctccatct
      781 tttagattag taggcgtgag ttccattact acttctgcat caatattttc aattatttgt
      841 agaggatcta gttgagatgt tttatttcta taatattcac caactgttcc tttatttttt
      901 tttatttcta aaagcctctg tatgtctaaa ccagaagtat caattgcaga accgttcttg
      961 tcaacgcagg ctacaatcct aggtttcatc ccataaagat tagataaatc tactaattta
     1021 gaaagcaata gtttagtaaa actttgacct acaattccat atccaattaa aattattctc
     1081 aattctaaat aataatatga taaataatga tatacttata ttttataatc aaaagtatta
     1141 gaggagtcct tcttgaattg tgatgaaact aaattttaaa tttggattag ataatatttg
     1201 tttatagttg aacaataggt tgtttgtctt gtatcccgaa ctaaagagaa taaactttaa
     1261 cttgtctact tgatgaaact caaggtatag gaagaataat ttgatagaac tattcattat
     1321 tttagtcata attggatttg gttcgggtat tattggctca cttataggag taggcggagg
     1381 tataatcatg acaccagcat tgacatatat gggattttct cctgctgtaa ttgcaagttc
     1441 tagtctaatt gcggtatttg caactagttt atcatctaca ataacatata ttagaaaaaa
     1501 gtatatcaat tatcggcttg gactacaact agctttacca gctatacctg gatctataat
     1561 tggaggattt ttttccaatt ttgtatcact agattatttt aagatttatt tcgctatatt
     1621 attgacatcg gtgggactgt atatattttt taaaaataaa attatcaata aaactctgaa
     1681 tagaactcca aaacctcttt tttatttaat tttaattttc ggaacttttg gtgcaggggt
     1741 tatatcaagt ttttttggca taggaggagg aattattttt gttccgattt tagttataat
     1801 ttataaactc aaaatgataa at
//
LOCUS       DATCMF010000052         2039 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_468679, whole genome shotgun sequence.
ACCESSION   DATCMF010000052 DATCMF010000000
VERSION     DATCMF010000052.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2039)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2039)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2039
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_468679"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            231..410
                     /locus_tag="VIL14_00645"
     CDS             231..410
                     /locus_tag="VIL14_00645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522244.1"
                     /translation="MRWPKDNKCKTIMSIAGKAIEKEDKTTKEEEEEPSLNVISNSPI
                     IMKELDDVGDLTIEK"
     gene            464..1651
                     /locus_tag="VIL14_00650"
     CDS             464..1651
                     /locus_tag="VIL14_00650"
                     /inference="COORDINATES: protein motif:HMM:NF018479.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="low temperature requirement protein A"
                     /protein_id="HEY8522245.1"
                     /translation="MDNNQDKKNKNEERHATWLELFYDLVFVVTISQLSHYLFHEISL
                     SNFFGFLFLFIPVWWSWIGTTFFATRFYSDDIVHRLLLLLQMGGAGAMAVNISGAFNN
                     TFSGFALSYAFMRLILVIEYVRVFRTIKSSDSANPLVKRYIIGFSIAAIIWLISAFVP
                     ITEIRFALWVIGLIIDFATPISTSKLTSKVAPHISHLPERMGLFTLIVLGESIVGIVT
                     GMTEQVWDVYSVIEASLGLCISFSLWWLYFDSTGKLPIQILREKGKISLYIIWWFTHF
                     PLVVAITAVGVGIRRLVSSEQHSVLSTSDLWLICGSVAISLISQSVLHLISIDRDTHD
                     FTRRKKFAISRVVSAIVIISIPILLNNYGIPIIIASLITGVCGFQIVFDLKSHPHHRI
                     FKL"
BASE COUNT          680 a          294 c          323 g          742 t
ORIGIN      
        1 ttccacggtt ttggtcttac tagtactata gcaattggat gttttatcaa tgttaaaaac
       61 tgaattagtg gatatttttg attctcctct tttcctccta tgtcagtaat ttataatgct
      121 aaaccgaatt ttccagcaag aatctatgca aatgaagaaa aaaattagga ttctttgttt
      181 ctgaattagt tttagatcca tcggcatata gaccagtagc tgatattata ttgagatggc
      241 ctaaagataa taaatgcaag acaattatga gtattgcagg taaggcaatt gaaaaagaag
      301 ataaaacaac aaaagaagaa gaagaagaac cttctcttaa tgtgatttca aattctccaa
      361 ttataatgaa ggaattagat gatgtagggg atttgactat tgagaaataa tagttcttag
      421 aatatcatca aaataataat ttgaataata ctatttaaat aaaatggata ataatcaaga
      481 taaaaaaaat aaaaatgaag aacgtcatgc aacatggtta gaacttttct atgaccttgt
      541 ttttgtagta acaatttcac aattatctca ctatttgttt catgaaatat ctttatcaaa
      601 tttttttggg ttcttatttc tctttattcc agtttggtgg tcatggatag gtacaacatt
      661 ctttgctact agattttact ctgatgatat agtacataga ctcttgttgc tattgcaaat
      721 gggaggagca ggtgctatgg cagtcaatat ttcaggtgca tttaataata cattttcagg
      781 ttttgcatta tcttacgcat ttatgcgttt aattcttgta atagaatatg tccgcgtatt
      841 tagaactatt aaatcttcag attctgctaa tcctttggta aaaagataca taattggttt
      901 ctctattgca gcaatcattt ggttaatctc tgcttttgtc cctattacag aaatacgttt
      961 tgcattatgg gttattggct taataattga ctttgctact cctattagta ctagtaaatt
     1021 aacttcaaaa gttgctcctc atatatctca tttaccagaa cgcatgggtt tgtttacgct
     1081 tattgtacta ggagaatcaa ttgttggtat agttactggg atgactgaac aagtttggga
     1141 tgtttattca gtgattgagg catctttggg cttatgtata tcttttagcc tttggtggtt
     1201 atattttgac agcaccggaa aattacctat acaaattctc cgagaaaagg gaaaaatttc
     1261 attatacata atctggtggt ttacacactt tccattagtt gttgcaataa cagctgtagg
     1321 agttggcatt agacgtttag tatcaagtga gcaacattct gtattatcta cctcagattt
     1381 atggctaatt tgtggttcag tagctatatc attaatttct cagagtgtat tacatttgat
     1441 ttctatagat cgagatactc atgattttac tcgtagaaaa aagtttgcaa tttctagggt
     1501 agtttcagct atcgtcatca ttagtattcc tattctatta aataattatg gcataccaat
     1561 tataatagca tcattaatca ctggagtatg tggattccaa atagtcttcg atctaaaatc
     1621 tcatcctcac catagaattt ttaaattata gatacacatc ataaagcact ttatagaaaa
     1681 attaagggca acacatatgg tttgaaagtg attgtaattt ctatattttt tattttcaga
     1741 tttcctttat catttttgaa gcctattaga gattacttca atattcaaat aagttaccaa
     1801 attaataaat aaataccagt ttaccgatcc caattacagg tcatgctcga agccatctaa
     1861 gctttggatt ttaggtgtag aacccgttta gttaatggga ccaagcagat atgaacccat
     1921 gagataaaaa atacaaaata aaacaaatca aacataaaaa ttattatcaa accttcaaac
     1981 ttaattttat taataaataa cttttttttc tatgtgacat tagcaaaata gtaattggt
//
LOCUS       DATCMF010000053         1896 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_402776, whole genome shotgun sequence.
ACCESSION   DATCMF010000053 DATCMF010000000
VERSION     DATCMF010000053.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1896)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1896)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1896
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_402776"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1101
                     /locus_tag="VIL14_00655"
     CDS             <1..1101
                     /locus_tag="VIL14_00655"
                     /inference="COORDINATES: protein motif:HMM:NF016310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aconitase X"
                     /protein_id="HEY8522246.1"
                     /translation="DGLKLAYKILVSIGNANDATKLIPIKWAHISGVNFNTIGEAGVR
                     FLSELDKETKVTVTTTLNPMGFDSKKDNNISEDFKANQHSIINSYLSLGVIPSFTCIP
                     YEIFTLPKKGEIVSFAESNAAVFINSILGIKTNKESSLSSLASAITGKTPYSDLLIDD
                     LRTPTISIKPDIDIRTESDFGLLGYFAGKIAKDICVGLEINSESLDIIKSKAISAGIG
                     TSGMCGMFSNKNNDCEKISFGQTELTQVKDELNTAEKGDLIVFGSPQLGLEEINLLGH
                     LTERKKFKKPCMIFCPRSLTECNNKMIGKLKKAGADINCDSCTCLTPLITKNDYDSIV
                     TNSIKCAYYMKHANKIDVSLKDMKSITKEYCE"
     gene            1109..1516
                     /locus_tag="VIL14_00660"
     CDS             1109..1516
                     /locus_tag="VIL14_00660"
                     /inference="COORDINATES: protein motif:HMM:NF014091.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF126 domain-containing protein"
                     /protein_id="HEY8522247.1"
                     /translation="MRNINCKKIVGGKAEGLALLSNKPLNMLSMFDTKTGQIKDKDHD
                     LFNKTLKNRILIFPNCIGSSVGAYIFYSLKINGVSPKAVICTNKCDIITASGCAISDI
                     PLVDGTGSSFESLKNNTKVTVDADKQIIIIHTV"
     gene            complement(1684..>1896)
                     /locus_tag="VIL14_00665"
     CDS             complement(1684..>1896)
                     /locus_tag="VIL14_00665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LSM domain-containing protein"
                     /protein_id="HEY8522248.1"
                     /translation="VTVQVLKENVGKNIMIKLKGDKVIRGTLSKFDQHMNLVLSDATE
                     YKGGDQTKLGNILLKGDNIIIISPQE"
BASE COUNT          709 a          274 c          311 g          602 t
ORIGIN      
        1 gatggattga agttagcgta taaaatattg gtttcaatag gaaatgctaa cgatgcaaca
       61 aaactaattc ctattaaatg ggcccatatc tcaggagtta attttaacac aataggagaa
      121 gctggtgtaa gatttctttc agagttagat aaagaaacta aagttacagt cacaacaacc
      181 ttaaatccca tgggatttga ctcaaagaaa gacaataaca tttcagaaga ttttaaagca
      241 aatcaacatt caattataaa ttcatattta tctttaggtg tcataccttc tttcacttgt
      301 ataccttatg aaatttttac tttgccaaaa aaaggtgaga ttgttagttt tgcagaaagt
      361 aatgcagcgg tattcataaa ttctatatta ggaatcaaga caaacaaaga aagttctttg
      421 agctccttag cgagtgccat aactggcaag actccatatt ctgacttgtt aattgatgat
      481 ctcagaacac caactattag cataaaacca gacatagaca tacgaacaga gtctgacttt
      541 ggactattgg gttactttgc tggaaaaata gcaaaagata tttgcgtagg tttagaaatt
      601 aattctgaaa gtttagatat aatcaagtca aaagctattt ctgcaggaat tggaacatca
      661 ggtatgtgtg gaatgtttag taataaaaat aatgactgtg agaaaatttc ttttggccaa
      721 acagagctaa cacaagtaaa agatgagtta aatactgctg aaaaaggaga cttaatagta
      781 tttggaagtc ctcaattagg tttagaagaa ataaatctac ttggtcactt aacagagaga
      841 aaaaaattta aaaaaccgtg tatgatattt tgtcctcgtt cactaacaga atgtaataat
      901 aaaatgattg gaaaattaaa aaaggcaggc gctgatatta attgtgattc atgtacatgc
      961 ttgacgccgt taataacaaa aaatgattat gattcaattg taactaatag tataaaatgt
     1021 gcatattata tgaaacatgc aaacaaaata gatgtttctt taaaagatat gaaatcgata
     1081 acaaaagaat actgcgaatg atttagttat gagaaatata aattgcaaaa aaattgttgg
     1141 cggaaaggca gaaggtttag cgctcttatc gaataagccc ttaaacatgc tctcaatgtt
     1201 tgatacaaaa acaggccaga taaaagacaa agaccatgat ttatttaaca aaacactcaa
     1261 aaatagaatt ctgattttcc ctaattgtat tggaagtagt gttggagctt atatttttta
     1321 ttcattaaaa atcaatggtg tcagtccaaa agcagttatt tgtaccaata aatgtgatat
     1381 tataactgca tcaggatgtg caatatcaga tattccactt gtagatggaa cagggtcaag
     1441 ttttgaatca ttaaaaaata ataccaaagt tacagttgat gcggataaac agatcattat
     1501 aattcataca gtttaatttt cggattatct ttcaatctta ctatcggtgc gtggcaatcg
     1561 atgggcgaac tgatcatgta taacatgaga tgaagaccaa agtccacgca ccgaaagaat
     1621 aacctaaatt aaaattaatt actttttcta ataaccataa agaagaacaa aatacctttt
     1681 gaattattct tgtggagata ttattattat attatctcct ttaagaagaa tatttcctaa
     1741 tttagtctgg tctccacctt tgtattctgt agcatcgctt aatacaagat tcatatgttg
     1801 atcaaatttt gagagtgtac ctctaattac tttatctcct tttagtttaa tcattatgtt
     1861 ctttccaaca ttctccttta atacttgaac cgttac
//
LOCUS       DATCMF010000054         2244 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_469103, whole genome shotgun sequence.
ACCESSION   DATCMF010000054 DATCMF010000000
VERSION     DATCMF010000054.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2244)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2244)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2244
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_469103"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            205..1224
                     /locus_tag="VIL14_00670"
     CDS             205..1224
                     /locus_tag="VIL14_00670"
                     /inference="COORDINATES: protein motif:HMM:NF012600.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522249.1"
                     /translation="MEEINNIIIYNEKNKNNNNNNNISLCSICNNDFKTISDPESGEI
                     ICEICGIVLSEEKKLPLHTRVYEEMNANSHFNTTTNTNLQNHDNNSSSNSNNILLNIE
                     SSTIIGRSNVDAIGKKISNDMQTKVDRLRVWEQRTRYTNPKDRNLKHAFNKLNNIKDK
                     MVLSTAIVEKSFSLFKKASSRGLVRGRSTEGVLSASIYLACKELGTPKTLKEISLTTN
                     VKIKSISKYSKVLIIELGLKPIPVIDPIKCIVKIANNLDLDEKSKHKAIKIMKEIMKE
                     EIHVGKNPLSMAASTIYAVCKTVEGEDITQSEIANSVGISALVIRDRYNDIIDKINLE
                     QIIYT"
     gene            complement(1657..1977)
                     /locus_tag="VIL14_00675"
     CDS             complement(1657..1977)
                     /locus_tag="VIL14_00675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522250.1"
                     /translation="MEDIIENFAEKLGIAPNVAKQCISITSRYFLQNLEPVVATGLLS
                     MLPSSLTNIISSDEKNEINTSQENISYGKIIEKISNECCNGDKQKGKKVYEEAINLIK
                     SKIW"
BASE COUNT          872 a          273 c          299 g          800 t
ORIGIN      
        1 aacaataata aagattactg atttaatagt gaaattcatc tatttcttaa gagaagttgg
       61 tctggagtag agtcctgtta gtagtacagt tctaccacat tttatttatc tttttggaaa
      121 tatatttaaa attttggttt aacatagatt aaacatatct tttttagtaa taaatgtata
      181 ttatatttta aggggttatt aaatttggaa gaaataaata atataataat atataatgaa
      241 aaaaataaga ataataataa taataataat atttcattat gctcaatttg caacaatgat
      301 tttaaaacaa tatcagatcc tgaatcaggt gaaataattt gtgaaatctg tggtatagtc
      361 ttatctgaag aaaagaaatt acctttacat acaagagtat atgaagagat gaatgctaat
      421 agtcatttca atacaacaac aaatacaaat ttacagaatc atgataataa tagtagtagt
      481 aacagcaaca atatcttgtt gaatattgaa tcttctacga ttattggaag atccaatgta
      541 gacgctatag gaaaaaaaat tagtaatgat atgcagacta aagtagatag attaagagta
      601 tgggagcaaa gaactaggta caccaatcca aaagatagga acttaaaaca tgcatttaac
      661 aaattaaata atattaaaga taaaatggta ttatctactg ctatagtgga aaaatctttt
      721 tctttattta agaaagcatc ttcacgagga ttagtacgag gaagatccac ggaaggagta
      781 ctatctgcat caatatactt agcatgtaaa gaacttggaa ctccaaagac attgaaagag
      841 atttcactga caactaatgt aaaaattaaa agtatttcaa aatactcaaa ggttcttatt
      901 atcgaacttg gtttaaaacc aataccagtc atagacccaa taaagtgtat tgtaaaaatt
      961 gcaaataatc ttgatttaga tgagaaatca aaacataaag ccataaaaat aatgaaggaa
     1021 atcatgaaag aggaaattca tgtaggaaag aatccattat caatggctgc atcaacaata
     1081 tatgcagtat gtaaaactgt agaaggggaa gatataactc aatcagaaat agcaaattct
     1141 gtaggaatat ctgctttagt tataagagat agatataatg acattattga caaaattaat
     1201 ttagagcaaa taatatacac ttgaaaataa ctcatttaga tatacaatcg ataataataa
     1261 cttcgctttt ttgttagaat atttcagtct attagaagat ctgacaatat caaaaagata
     1321 attaaatgtt gattactttg ctaaatcttg taatcctttg ccaagagttt catcaagacc
     1381 gtttgcacct tcagtgatat ttgtcgccag atgttttaat tgttttaatt caaggctttc
     1441 tagtatattt aaggttcaaa tcccaaatcc tagaattcat tttatgtgtc ataattttta
     1501 aaccgaacta tttagtttat aatttttaaa atatattatc tctctatttg taatctctca
     1561 attttttaga taatttgaat ttaaatatat caaatgtttt tgaatataga aaagttcaaa
     1621 agaaccttca taaagcaatg aaaaaatatt tgatttttac cagattttac tttttattag
     1681 atttatcgct tcttcatata ccttttttcc tttttgttta tcaccattac agcattcatt
     1741 agatattttc tcaataattt taccgtagga aatattttct tgacttgtat tgatttcgtt
     1801 tttctcatca ctagaaatta tatttgttaa acttgatggt agcattgata aaagacctgt
     1861 tgctactact ggttctaaat tttgaagaaa atatcgtgat gtaattgaaa tacattgttt
     1921 tgcaacatta ggagcaattc ctaatttttc tgcaaaattt tcaataatat cttccataaa
     1981 taatatttga cattaaaata tttaaccaat taatatatca tatttctaat gagttaacta
     2041 atagtgatta aatcaatcaa tcgatttaca aattggaatc tttacgatta ttataggttt
     2101 actattttta ttatcatatt ttattgaatt actattatct ccatccataa tatattatat
     2161 aatacagaca acataattta taatgattta taccctggat ttaggtttta ataataaagg
     2221 aaaaggctca ttgaggctgc tgta
//
LOCUS       DATCMF010000055         1952 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_71980, whole genome shotgun sequence.
ACCESSION   DATCMF010000055 DATCMF010000000
VERSION     DATCMF010000055.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1952)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1952)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1952
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_71980"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..280
                     /locus_tag="VIL14_00680"
     CDS             <1..280
                     /locus_tag="VIL14_00680"
                     /inference="COORDINATES: protein motif:HMM:NF016300.4"
                     /note="The SIMPL domain is named for its presence in mouse
                     protein SIMPL (signalling molecule that associates with
                     mouse pelle-like kinase). Bacterial member BP26, from
                     Brucella, was shown to assemble into a channel-like
                     structure, while YggE from E. coli has been associated
                     with resistance to oxidative stress; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HEY8522251.1"
                     /translation="FRVSEEKLQNIKNMLLKEAVTNAKTKADIVAAASGLNVAGIKSI
                     TVGEIGLPPVPGPVYAKSVTSDEASSTPILAGEQEVSTTVSIVYFLSR"
     gene            complement(560..913)
                     /locus_tag="VIL14_00685"
     CDS             complement(560..913)
                     /locus_tag="VIL14_00685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="four-helix bundle copper-binding protein"
                     /protein_id="HEY8522252.1"
                     /translation="MNTSILKNQQYQTCIDACNNCAECCEACCTECMSNTEMAGMMGR
                     CMMMCRDCADMCRMASMMMARGSEYVKQMCNMCADMCEACAMECEKMGGKMEICKQCA
                     EMCRMCAQECRNMMR"
     gene            1212..1871
                     /locus_tag="VIL14_00690"
     CDS             1212..1871
                     /locus_tag="VIL14_00690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522253.1"
                     /translation="MSYGIFREIERLIEYIPIEIDTYGIGKLATNTFIDSRYNFKDID
                     RIATRLGILEIGRNTVSLREIIKLLNKFLKDADIEELVESPRRYREIQNSVSGLPLKG
                     LLFDFCLSALVNDTFDAKLFLIHSLYLTGLRRQLVILLSSVINDSVLVKNDNDVREML
                     TLLALLSEPNNIDVYFDINNDGFNRRYNMYLKEIGKLSKYNNNCNTPLAKISQVKKVQ
                     K"
BASE COUNT          710 a          284 c          273 g          685 t
ORIGIN      
        1 ctttagggta tcggaagaaa agttacaaaa tataaaaaat atgttgctaa aagaagcagt
       61 tacaaatgct aaaactaaag ctgatattgt tgctgctgca tctggattaa atgtagctgg
      121 aataaaatct ataacggttg gagaaatagg tctccctccg gtaccgggac cagtatatgc
      181 caaatctgtt acttctgatg aagcatcttc aacgcctatt cttgcaggag aacaagaagt
      241 ttctacaaca gtaagtattg tttactttct aagtagataa acatttttat ttttttaagg
      301 ataatttttc ctttataacc tattgtaatt attttttcgg cgatcatatt aattaaagga
      361 taatatctta gacattgaat aaataatgtt ttgtcatttc actttattta aaatttagat
      421 aattttaata taagacactt ataagcatat gctatatatc gttactattg aagaaaaaag
      481 tattctagag aaaaagagaa tgatttatct tacacggatg tgtagtatag tacgtttttg
      541 taattaatat tgtgttattt tatctcatca tattacgaca ttcttgtgca cacattctgc
      601 acatttctgc acattgttta catatctcca tttttccacc catcttttca cattccattg
      661 cacatgcttc acacatatct gcacacatat tgcacatttg ttttacgtac tcgctacctc
      721 tggccatcat catagaagcc attctacaca tgtctgcaca atcgcgacac atcatcatac
      781 atcgtcccat cattcctgcc atctctgtat ttgacataca ttctgtacaa caagcttcac
      841 aacattctgc acaattgtta cacgcatcta tacaagtttg gtattgttga ttttttaaaa
      901 ttgaagtatt catattttta tggtaacggg atactatata aagattaagt aaaaattgta
      961 atatatatgt gaaaattgca tatatttagt ataaagtaca tatttattaa aattatatgt
     1021 aaatattgca taattcaata tgcagaattt acctatataa gtaaagtagt tttcaggcat
     1081 atgaaaaaat tatagaacta gttgtatgaa aaatattatt ccaaatgttc tgatttgcat
     1141 atacttttaa taatttacat gtttcctaag gataataaat gatacattta ccataattat
     1201 tgataacaat aatgtcatac ggaatattta gagaaataga aaggctgata gaatatattc
     1261 caattgaaat agacacttat ggaataggaa aactagctac taatacattt atagattcta
     1321 gatacaactt taaagatata gacagaatag caacaagatt aggcattcta gaaataggaa
     1381 gaaataccgt tagtttgcga gaaattataa aacttctcaa taaatttctc aaagatgcag
     1441 atattgaaga actagtagaa agtcctagac gctatagaga aatacaaaac agtgtctctg
     1501 gtcttccatt gaaaggtttg ttatttgatt tttgtttatc agcattagta aatgatactt
     1561 tcgatgctaa attatttctt atacattcac tatatcttac tggactccgc agacaattag
     1621 ttatattgct ttcttctgta atcaacgatt cagtacttgt gaaaaatgat aatgacgtta
     1681 gagagatgct gacacttctt gcattgcttt ctgaaccaaa taatattgat gtatactttg
     1741 atattaataa cgatggattt aatagaagat ataatatgta tttaaaagaa ataggtaaac
     1801 tctcaaaata taataataat tgtaatacac cactggcgaa aattagtcaa gttaaaaaag
     1861 tacaaaaata acaatagtgt attctcttat ttgctataat catcaagata gaaatcaaat
     1921 ctaaatgaat tctttcttta ttttaaaaga ag
//
LOCUS       DATCMF010000056         3073 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_8993, whole genome shotgun sequence.
ACCESSION   DATCMF010000056 DATCMF010000000
VERSION     DATCMF010000056.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3073)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3073)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3073
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8993"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            34..1590
                     /locus_tag="VIL14_00695"
     CDS             34..1590
                     /locus_tag="VIL14_00695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AarF/ABC1/UbiB kinase family protein"
                     /protein_id="HEY8522254.1"
                     /translation="MTNKNASKLKLIKIIIKLLPIIVNFKRDRKEWVKREGKNVDEKK
                     YRKHAQQALKIFIQLGPSYIKLGQWLSSRSDILPQPYLEVFATLQDDVPVESFEKVKK
                     IIEEELGNLEEKFEYFNKEAFSGASLGQVYHARYNGKEVVVKISRPGIERIVEEDISI
                     IKKLIPLSTRFIDPNLRFSVEGMFSQFTETIYEEMDYIKEAENLLAIKKNLAKEKKII
                     IPNVILDRTSKHIITTEYEPGIKITDVETLDKKGIDRQKLVILIHHIFFKMLLRNNIF
                     HSDPHPGNIAVKDDGSVILYDFGMVGRLDNETRLLLIRLYLGLIDKDPVRTVDVLYQL
                     GTLDYTTNRNIIEKAIELSIRSMHGKHVDKMEVKSLMDLSNKTLSKFPFRLPKNLALY
                     MRMTSIVEGIYHQHKIRFQFVKVLSNLFEQEGLIKDAYIEEIKYSFQKFIKNIETSVN
                     LSQNIKTYLDNQETNIKKTDKLYTFLGKSIFASALFVGSAFLFSYNPIISSIGFICSI
                     ILFVFSIIKK"
     gene            1719..2996
                     /locus_tag="VIL14_00700"
     CDS             1719..2996
                     /locus_tag="VIL14_00700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HEY8522255.1"
                     /translation="MDIFLFFSVFNILSLPESTSSEFIVQDFAVIMIIAAIMLVLTHK
                     YKQSMVIGYLIAGMIIGPFTPPFSLIHDIETVNIFAELGIIMLLFVIGIEFPIAKLKQ
                     IGKISIIVGLTESIGTMIITFFVAQRLGFTIFDSMFLGLAMSITSTVVTIKVLEELGK
                     IKERSSILILGVLIVEDIVAVSVLAILQSIAVAADTEEIAIIPISVSIAIALVFIGSI
                     LILGSKFLPNLIDKIGKTNDYALLLIVILGLAFGLSFIANILGLSVVIGAFLAGVLVA
                     ESRSATVAKVITIPLRDVFSALFFVSIGALVNISLIPLYIVPVIVLILTAFAVKFLLV
                     LAVLAKSKVDNIDILKVGLGLATAKGEMSLVIAKGGQDVGAITSSILPILSVVTIITS
                     FATPYILKFANNIRISSSNNKTNKIDDENKNKP"
BASE COUNT         1160 a          373 c          469 g         1071 t
ORIGIN      
        1 attttgatta ttgtttaaat atttatttct gaaatgacaa acaagaatgc atcaaaactt
       61 aaattaataa aaattataat aaagttatta ccaataatag tcaattttaa gagagataga
      121 aaagaatggg taaaacgtga aggaaaaaat gtcgatgaaa agaaatatag aaaacatgca
      181 caacaggcct taaaaatttt tattcaactg ggaccatcat acataaaatt aggtcaatgg
      241 ctatcatccc gttctgatat attaccgcaa ccatatttag aagtctttgc taccttacaa
      301 gatgatgttc ctgtagaatc ttttgaaaaa gtaaaaaaaa taattgagga ggagttagga
      361 aatttggaag aaaagtttga gtattttaat aaagaggctt tttctggcgc tagtttagga
      421 caagtatatc atgcaaggta taatggaaaa gaggtagtag taaagatttc aagaccagga
      481 attgaaagaa ttgtagaaga agatatttca ataataaaaa aattgatccc tttatctact
      541 cgatttatag atcctaattt aaggttttca gttgaaggaa tgttttctca atttactgaa
      601 actatttatg aagaaatgga ttacataaaa gaagcagaga atctattagc aattaagaaa
      661 aacctagcta aagagaaaaa aattataatc cctaatgtaa tacttgatag aacttctaaa
      721 catatcataa ctacagaata tgaacccgga ataaagataa cagatgtaga aacattagat
      781 aaaaaaggta ttgatagaca aaaattagta atattaatac accatatatt tttcaagatg
      841 ctattacgta ataatatttt tcattctgat cctcatcctg gaaatatagc tgtgaaagat
      901 gatggttcag taattctata cgattttgga atggttggaa gacttgataa tgaaactaga
      961 ttactgttga ttagacttta tctaggtttg attgataaag atcctgtaag aactgttgat
     1021 gtattatatc aacttggaac attagattat accactaata gaaatattat tgagaaagct
     1081 attgaattaa gtattagatc gatgcatgga aaacacgtag ataaaatgga agtgaaatct
     1141 ttaatggatt tatcaaataa gacgttaagt aaatttccat ttagactacc caaaaattta
     1201 gcattatata tgaggatgac ctcaattgtg gaagggattt atcatcaaca taaaataaga
     1261 ttccaatttg taaaagttct atcgaattta ttcgaacagg agggactaat caaagatgca
     1321 tatattgaag agataaaata ttcttttcaa aaatttataa aaaatataga aacatcggta
     1381 aatttatctc aaaatataaa aacatattta gataatcaag aaacaaatat caaaaaaaca
     1441 gataagcttt atacattttt aggtaagagt atttttgcct ctgcattatt tgtaggatct
     1501 gcatttttat tttcatacaa tcctataatt tcatctatag gttttatttg ttcaataata
     1561 ttatttgttt ttagtattat aaaaaaataa taatattttt gtatcaataa taaatttttc
     1621 aatattatta ttgaaagagt ggtagagcaa taactcaaca agattttctt tataaccctc
     1681 ttgattttta ttttagatga ttatataatg aatgggccat ggatattttt ttattttttt
     1741 cagtatttaa tattttatcc cttcccgaat caacatcttc agaatttatt gttcaagatt
     1801 ttgctgttat aatgattatt gctgctataa tgttagtttt aactcataaa tataaacaat
     1861 ccatggttat tggttatcta atagcaggaa tgattatagg cccgtttact ccacctttta
     1921 gtttaattca cgatatagaa actgtaaaca tatttgctga gttaggtata ataatgcttc
     1981 tctttgtaat tggtatagaa tttcctatag caaaactcaa acaaataggt aaaatttcaa
     2041 taatagttgg attaacagag tcaattggaa ctatgattat aacttttttt gttgcccaaa
     2101 gattaggatt tactattttt gactcaatgt ttctaggatt agccatgtct attactagta
     2161 ctgtagtaac tatcaaggta ttggaagaat taggaaaaat aaaagaacgc tcatcaatat
     2221 taatattagg agttttaata gtcgaagata ttgtggctgt atcagtttta gccatattgc
     2281 aatccatagc agttgcagca gatactgaag agattgcaat tattcctata tcagtatcta
     2341 tagctatagc actagttttt attggaagta tacttatact tggatcaaaa tttttaccta
     2401 atttaataga caaaatagga aaaacaaatg attatgctct tctcttaata gtaatattgg
     2461 gacttgcttt cggtctatcc ttcatcgcta atattttagg tttatcagtt gtaataggtg
     2521 catttttagc tggagtttta gtggctgaat ctagaagtgc aacagtcgcg aaagttatta
     2581 ctataccatt aagagatgta ttttctgcat tattctttgt atctatagga gcattagtaa
     2641 atatttcact tatcccgtta tacatagttc ctgttattgt attgatacta acagcttttg
     2701 ctgtaaaatt ccttctagtg ttagctgtat tagcaaaatc caaagttgac aatattgaca
     2761 tattaaaagt aggtttagga ttggcaacag caaaaggaga aatgtcttta gttatagcaa
     2821 agggtggaca agatgtgggt gcaataactt catctatatt accaatacta agtgttgtta
     2881 caataattac atcttttgct actccatata tactaaaatt tgcaaataac ataagaattt
     2941 ctagttcaaa taataaaact aataaaattg atgacgaaaa taaaaataaa ccttgagaga
     3001 tatacaatgc attttaatag acacttttaa taattaattc ccttaaagtt tgagatcata
     3061 ttaaaaaata tgc
//
LOCUS       DATCMF010000057         1500 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_72915, whole genome shotgun sequence.
ACCESSION   DATCMF010000057 DATCMF010000000
VERSION     DATCMF010000057.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1500)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1500)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1500
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_72915"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..203
                     /locus_tag="VIL14_00705"
     CDS             <1..203
                     /locus_tag="VIL14_00705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522256.1"
                     /translation="LEEARCRIRLSSVRGKIKKYEIEVSIFTPTNRYSYTNEGSDLAT
                     IFDLMKDSLKKKLTQKNKKRQK"
     gene            complement(676..1425)
                     /locus_tag="VIL14_00710"
     CDS             complement(676..1425)
                     /locus_tag="VIL14_00710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522257.1"
                     /translation="MKCHLCNGEDFLFKCNYCKEFFCTNHRLPISHFCNAIDRFSEKR
                     KMNLFRDDFKKSSFLNNFSKTINIRFSRTEIKHLLIATFLVLLVGMSLNNYRYVSFEF
                     LVIFIIAFLFHELAHKFLANFYGSWAEFRAELYGLIVTAISAIPFIPFKFIAPGAVIV
                     GISDKEKLGKVALIGPMTNLVMGLVFLLLSYLYPYLLYFNIGASFNAWISMFNLLPFG
                     VLDGQKIFNWNKVVWSFTMAITMTLFIISYN"
BASE COUNT          609 a          211 c          196 g          484 t
ORIGIN      
        1 atttagaaga agcaagatgc agaataagat tatcgtcagt cagaggtaaa attaaaaaat
       61 acgaaattga agttagtata tttacaccga ctaatagata tagttacacc aatgagggtt
      121 cagatcttgc tacaattttt gacctaatga aggatagttt aaaaaaaaaa ttaacacaaa
      181 agaataaaaa acgtcaaaag taatgaaaaa tagatagata ctttagtatc gtatcattta
      241 taattttata cttagtttct catatcttga tattttcaaa cattgctatt gctattgtac
      301 aataaaagaa tctaaaagaa aggaaaaata gagagaatat taaaaaatag acatatttaa
      361 tagattgttt cccctataga atgtaatgga tttttcttct acaggatcta taatgtattg
      421 tagaacatgt aaagaatata tggttatcaa tgttgatgaa aaaaatccaa agaattacaa
      481 atgctctcgt tgcgaggtag aacttctccc agttctagat aattagaata aaaattaatt
      541 tctttttatt tttcatttga tatcgcgaaa acttgtacaa gttaagcaag ttatttagtt
      601 tgtttttcac ttataataag accaaaatag atctttgcca ttcatatttt attagatatc
      661 aaatatagag attcattaat tataagatat tatgaataaa gtcatagtta tggccattgt
      721 gaaagaccat actactttat tccaattaaa aattttttgt ccatctaata ctccaaatgg
      781 tagtaaatta aacatagata tccacgcatt aaaacttgct ccaatattaa aataaagtaa
      841 atatggatat aaatatgaaa gcaaaagaaa taccaatccc attactaaat tagtcatagg
      901 ccctatcaaa gcaactttgc ccagcttttc tttatctgaa ataccaacaa tgactgcccc
      961 tggtgcaata aatttaaaag gaatgaatgg aatagcagat attgctgtaa caattaaacc
     1021 atatagttct gctcgaaact ccgcccaact tccataaaaa ttagctaaaa atttatgggc
     1081 cagctcatga aatagaaatg ctattataaa aataaccaaa aattcaaatg agacatagcg
     1141 gtaattattc aatgacattc ctactaacaa taccaaaaaa gttgctataa gtaggtgttt
     1201 tatttctgtt ctagagaatc gaatattgat agttttacta aaattattaa ggaaactact
     1261 ttttttgaaa tcatcacgga atagattcat ttttcttttt tcagaaaacc tatcaatagc
     1321 attacagaaa tgactaattg gaagacgatg attagtacaa aaaaattctt tacaataatt
     1381 acatttaaaa agaaaatcct ctccattaca tagatggcat ttcataaatc ataatctaaa
     1441 aagcaagata tattattgcc gattggaact acagaataac ctcacaaatg tacaattctt
//
LOCUS       DATCMF010000058         1623 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_143988, whole genome shotgun sequence.
ACCESSION   DATCMF010000058 DATCMF010000000
VERSION     DATCMF010000058.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1623)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1623)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1623
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_143988"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(406..1416)
                     /locus_tag="VIL14_00715"
     CDS             complement(406..1416)
                     /locus_tag="VIL14_00715"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent alcohol dehydrogenase"
                     /protein_id="HEY8522258.1"
                     /translation="MTIQAYAAHKASGKLESFEYELGSLKPDEVEIDVEYCGICHSDL
                     SMLKNEWGITRYPFVPGHEVIGKVAEVGNMVTHLEVGQYVGLGWRARSCLVCDQCLSG
                     YHNRCLKGEDVIIGRHGAYAEKVRCQALWAFPLPKNINTKTAGPLFCGGITVFNPIIQ
                     NNIKSTDHVAVVGIGGLGHMAIKFLKSWGCEVTAMSSNPEKEREAQQFGAHHFLNSRG
                     PDALKSYVNYFNMVLVTANVNLDWDAYINTLRPGGKLHIVGAASQVKATVSPLIAGEK
                     SIGASPSGGPAEILMMLDFCNRHAIEPVIEEFPLSRVNEAMTRLEAGKARYRIVLRND
                     FK"
     gene            complement(1413..>1623)
                     /locus_tag="VIL14_00720"
     CDS             complement(1413..>1623)
                     /locus_tag="VIL14_00720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522259.1"
                     /translation="ADYQESQTGFDLGTLGHTQMDIVSCKAILLSVVDILQQILISVS
                     VTTLANVTVMRYRKRLIFLYASTSA"
BASE COUNT          486 a          355 c          283 g          499 t
ORIGIN      
        1 tgtcagtatt gcctttctaa attctatatg ctccataatt aatctttaat gcgcttttcc
       61 ttggtaatca cactccaagc atcaaatgta ttgtagtcgc ttagtttgtt gagcaagcgt
      121 ggcaagtcct taatttctga ctgcatgtaa ataagaatta ggctagccta ttattctcgc
      181 ttgcattatt tctttgacta gaggttcgag ttttgaaaaa ataagtagcc aataaagtct
      241 aagttatttt atgactaaag catctaaata cagatagtag ggccagtggt ttccgtagtg
      301 atatcacttc aataattgga ttctgaaatg ataacggcta acgtctttta aaaaatacct
      361 agttcagttc gttgtcgttt ggggttgaaa gattagttat caagactatt tgaaatcatt
      421 tcttaagact attctatatc gtgctttacc cgcttcaaga cgtgtcattg cctcattaac
      481 acgtgaaaga ggaaattctt ctatgactgg ctcaatggca tgacgattgc aaaaatcaag
      541 catcattaga atctctgcag gacctcctga aggtgaagcg ccgatagatt tctcaccggc
      601 aattaatggg gacacagttg cctttacttg tgaagctgcc ccaacgatat gtaacttacc
      661 accaggacga agtgtattaa tataggcatc ccaatccagg ttaacatttg cagtaaccag
      721 taccatattg aaataattta catacgactt taaagcatca ggacccctag aatttaagaa
      781 atgatgagct ccaaactgtt gtgcctccct ctctttttca ggattgctag acatagcagt
      841 aacctcacat ccccaggatt taagaaattt aatagccatg tgtcctaacc caccaattcc
      901 aaccacagct acgtgatctg tagatttgat attattctgg ataatcggat tgaaaactgt
      961 aattccacca caaaataatg gaccggcagt cttagtgtta atattcttag gtaatggaaa
     1021 agcccataaa gcttgacatc gtactttctc tgcatatgcc ccatgtctgc caattatgac
     1081 atcttctccc ttcaaacaac gattatggta accactgagg cactgatcac atactaagca
     1141 agaacgagct cgccaaccta gccctacgta ttgtccgacc tctagatggg ttaccatatt
     1201 tccaacctca gctactttac cgataacctc atgtcctggt acaaacgggt accttgtaat
     1261 accccattcg tttttaagca tgctcaaatc actgtgacag ataccacagt actcgacatc
     1321 gatctctact tcatcaggtt tcaaggaacc taattcatac tcaaatgatt ctagttttcc
     1381 acttgcttta tgagccgcat atgcttgtat ggtcatgccg atgtacttgc gtataggaat
     1441 ataagacgct ttctataccg cattaccgtc acattagcca gtgtagttac agataccgaa
     1501 attagaattt gttgaagaat atcaactacg gacagcagta tcgctttaca agaaacaata
     1561 tccatctgcg tatgacctag agttcctaaa tcaaaacctg tttgtgattc ctgatagtcc
     1621 gct
//
LOCUS       DATCMF010000059         1542 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_536837, whole genome shotgun sequence.
ACCESSION   DATCMF010000059 DATCMF010000000
VERSION     DATCMF010000059.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1542)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1542)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1542
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_536837"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(277..612)
                     /locus_tag="VIL14_00725"
     CDS             complement(277..612)
                     /locus_tag="VIL14_00725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522260.1"
                     /translation="MNLNTMNKLFIFSMALMLSLALGYGVAIPQSALAALGQGYDSNS
                     YSNSYDNSYSKYPQKSMSYDNSYSKYPQKSMSYDNNYKKEFKPYECRKGSLEGFFTSS
                     VEFCIKATR"
BASE COUNT          536 a          208 c          230 g          568 t
ORIGIN      
        1 atatatttta tgacatcaaa taaggacaca aaaataattc gaagctcctc taagatggtg
       61 taattcgaga atctggctat tttagactta gaagaaggga tcaacaaagt cattaatact
      121 atctagaaca tgttctaaga aaggaattgg tatttcttaa attaattgga ctaacaaatt
      181 ataaaatttt tagggttgaa aaaaaataaa agtagaggat ttttaaccat gtaatatctg
      241 gtttaaacct gtttttatgt tagggaatat gtgaaattac cttgttgctt taatacaaaa
      301 ttctactgaa cttgtgaaga acccttctaa tgaacctttt ctacattcat atggtttaaa
      361 ttctttttta taattgttgt catagctcat agatttttga ggatatttgc tgtagctgtt
      421 gtcatagctc atagattttt gaggatattt gctgtagctg ttgtcataag agtttgaata
      481 gctgttgcta tcatatcctt gacctaaggc ggctaaggct gattgaggaa tagcaactcc
      541 atatcccaac gcaaggctca acattagagc cattgagaag atgaataatt tgttcatagt
      601 attcagattc atataagatt tatttagatt gtgaattatc actagagaat caaatagaag
      661 aatcttataa ttaatgaagt ctaataaata tctacttata aatttttatg ttcttttaac
      721 acgagattta ttccattcat ataattttaa ttattttcct agcataatgt tatataaaac
      781 agatatactg atcactgtga gtaaacagtg gatattatat aaagggattt aaaataactt
      841 ttttataaat ataatcaatg actaatccgg agaatgggta ttaacacctt gcatggacat
      901 tctccgaata gtggtggatg tgacttatcc aaaataacct tgaattttat tttattatag
      961 gttgttgtaa atcattctat agagttattc tataacaaaa gaatcatttt tgcttgaaaa
     1021 tttattaaaa taatatctaa taactggtat atattaccaa gctgttatat attcaaatct
     1081 aataccctat ttgttgataa ttatttgtag ttctatttag gctcgtactc gaatatttcc
     1141 tgaatggtct cgcttttctt gtccttatat atattagaag aatatttcat tgaaaatcta
     1201 atagtttcag taaagatttt atttaaatct acggatcaaa tatgtttcca aagttaaact
     1261 tattagagag cacaatttta attcaggaag atatattaga gatagcgtat aataataata
     1321 gtagtagtga agctattcac ttattataaa gattcaaatc ctaccactta ttgcatttag
     1381 tacttttttc attcctattg gaaataatag gaagggttga aataagttac caatcaacta
     1441 atactagtta accgatctac ctacttgtca tattctaatc cccctacgaa aagcacctca
     1501 tgtttggcat gatatattca tttttccagg gcataatggc ac
//
LOCUS       DATCMF010000060         2022 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_10575, whole genome shotgun sequence.
ACCESSION   DATCMF010000060 DATCMF010000000
VERSION     DATCMF010000060.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2022)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2022)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2022
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10575"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(441..863)
                     /locus_tag="VIL14_00730"
     CDS             complement(441..863)
                     /locus_tag="VIL14_00730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522261.1"
                     /translation="MNKNLLIAGMFGFLVSAVIAEIYAIYSPSDVLTSTITVLVGFII
                     YKISFIVLFHIDNKRKYTNRFTSRINFNRLKQIIKKMIFAWSIFDIVNNLSRWIILYE
                     LLIIGFRPFEAAILSSIAASSLSYLSINIISRRIKLFS"
     gene            1471..1962
                     /locus_tag="VIL14_00735"
     CDS             1471..1962
                     /locus_tag="VIL14_00735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522262.1"
                     /translation="MSIVNAQENIQEDEYSKTTTTNLTQIFGEPIYKEISRQASNSIV
                     LNVEGGSIQTQDFYTATGILKDVGNVTDKSTFITTYQPDGNTSTSTGNGIIMTTDGEI
                     ATYTGQDLGMTDINGTQTFRGMMILQSDLDGKIAFLDNLIGLYEYKSWLDGKKSGVIW
                     KWK"
BASE COUNT          734 a          277 c          270 g          741 t
ORIGIN      
        1 attttcttat aattcactta ttctctatat actttggttt atctatacat tttctatatt
       61 tgatattata gtactcttat agttgttctt aaatgtgatt cataaacata atccgctcat
      121 caacaattta ctaaatgact attttcctag agcttgaccc ctttcttctt tagttctatc
      181 atcgtctgac atatttttat atagttttta tgataattta gtatttatct tggtttcata
      241 agtgtgttat aaaattacaa tcatttgtct aatattcttt attttctatt taacatcaac
      301 gattttaata caaaactaag taaatcttta tccatattgc tataatttag actcttattt
      361 tcgcataact aggcctcatt cctttctctg tctatttata tcgggattaa tttcatttta
      421 agatacttct tttttgatgg ctatgaaaag agtttgatac gtcttgaaat tatattgatt
      481 gataaataag atagggaaga agcagctata gaagataata ttgctgcttc aaaaggtctg
      541 aatcctatta ttaacaattc atataatatt atccatcttg atagattatt aacaatatca
      601 aatatagacc atgcaaatat catcttcttt attatttgtt taagacgatt aaaattaatc
      661 cgactagtaa atctattagt gtattttcgt ttgttgtcaa tatgaaaaag aactataaat
      721 gatatcttat aaattataaa tcctaccaac actgttattg tagaagttaa tacatcacta
      781 ggagaatata tcgcatatat ttcagctata acagcactca ctaaaaatcc aaacatacct
      841 gcaataagta aattcttatt catcaaaata gtttctcgat atttcttgta aaaattattc
      901 aagagtttat tcaattaata attatatata cacagacaac tctttatgtc tttgaataga
      961 caatttacct aattaagaat agaacttttg tcaaaattat ttaacttcaa attcttcatt
     1021 tgggacaagt aaattgtgaa gatactatga gctactttgc taaataatga agccataaaa
     1081 agacactaaa actataatca aattaaaaaa gctaaatact atgttgttgt agaatttatg
     1141 atattagact catatattat aaccgctatc ggtgttactc cccgactggt cagtttctgt
     1201 tattgtaagt gaactcgaat gtcaaagaag aagatgaaga aatgactaac aaacttgttc
     1261 tacctatttt atcattatat gctaaatgaa taaatttttc attggaattt ctttatcttt
     1321 attgaatgat gcatgggcat aaagctagac aattactgta gtaataaacg gatataaatt
     1381 ggtcttacta aatatttata caaaattatg atgaaaaaac taatctttaa cattgtcttc
     1441 cttgtattct atatattttt atcaaatgga ttgtcaattg tgaatgcaca agaaaatata
     1501 caagaagatg aatattcaaa aacaacaact actaatttaa cgcaaatatt tggagaacct
     1561 atttacaaag agataagtcg tcaggcaagt aattcaatag tcctaaatgt tgaaggtggt
     1621 agcattcaaa ctcaggactt ttatactgca actggaattt taaaggatgt tggaaatgtt
     1681 actgataaat cgacttttat aacaacatat caacctgatg gtaatacttc cactagtacg
     1741 ggtaatggca ttataatgac aactgatggt gaaattgcaa cttatactgg acaggatcta
     1801 ggaatgactg atataaatgg aactcagaca tttagaggta tgatgatttt gcaatctgat
     1861 ttggatggaa agattgcatt ccttgataat ttaataggac tatatgaata caaatcttgg
     1921 ttagacggaa agaaatctgg tgtcatttgg aaatggaaat aaaatataat aaagaagcaa
     1981 aatcattatg taaaatacaa ctcttgtaat tgtctaatag tt
//
LOCUS       DATCMF010000061         2772 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_536955, whole genome shotgun sequence.
ACCESSION   DATCMF010000061 DATCMF010000000
VERSION     DATCMF010000061.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2772)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2772)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2772
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_536955"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(350..862)
                     /locus_tag="VIL14_00740"
     CDS             complement(350..862)
                     /locus_tag="VIL14_00740"
                     /inference="COORDINATES: protein motif:HMM:NF012584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-containing protein"
                     /protein_id="HEY8522263.1"
                     /translation="MKFQIEGNTNKINAELVYNKGSGDLLFVIDDQKYNLKLLKSSSN
                     EFEFILENTYHYVKILPSTETKYKVYIDGIVVEIKKHSKITEIIEKTLKSKGTTYQAN
                     NVTSQIPGRVVKISVSTGDKIKEGDPIVVLESMKMQIAIKSQKEGTIKEIKVKEGSTV
                     SRNEIVAIIE"
     gene            complement(862..2361)
                     /locus_tag="VIL14_00745"
     CDS             complement(862..2361)
                     /locus_tag="VIL14_00745"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HEY8522264.1"
                     /translation="MSKISSILIANRGEIALRVIRACKELGIKSISVYSDDDNRSIHV
                     KRADETYRLGPSQASESYLRIDKILEIAKSSGADAIHPGYGFLSENDVFSDECKKNGI
                     IFIGPTARAMELAGDKMKCKEIMKKAEVPTVPGSDGVVDDMGLAVEIAKEAGYPVMLK
                     SAFGGGGRGIRLVNDEKELRQEFELASNESQAAFGKSALFIEKYLTNIRHIEFQLIRD
                     SSGNGRHLFERECSIQRRHQKLIEMSPSPVVNKEKREKVGEIAVRASTALDYLNAGTA
                     EFLADAEGNFYFIEINARLQVEHPITEIVTGKDLVKLQIHVAQGEELPFKQQDLELKG
                     SAIECRINSEDPFYDFAPSVGYVPNCNIPSGPGVRVDTYLYPGCNVSGYYDSLIAKLI
                     TYGGDFYEARIRMKNALSEFTIEGINTTIPIHKTILEESNFVNGNISTDYIEKYNIIE
                     KMKHKRDQEYKDKAYAAISGILLQSEFVKKSYSGQRIDRSQKSMDGGFF"
     gene            complement(2374..>2772)
                     /locus_tag="VIL14_00750"
     CDS             complement(2374..>2772)
                     /locus_tag="VIL14_00750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxyl transferase domain-containing protein"
                     /protein_id="HEY8522265.1"
                     /translation="LYAYCEASVPKITCIIGKAYGGAYIAMGSKNLKTDINFAWPSAE
                     IAVLGPEAAITIIHRRELKSSVDAKTIKKKLAEEFRKKFANPYIAAEKGIIDQVIDPM
                     ETRTMIIGALDSLSGKKEIGPWKKHGNINL"
BASE COUNT          836 a          518 c          396 g         1022 t
ORIGIN      
        1 ttaactgtct tgatttaaaa ttgtctatgt gattaactca tattactaaa agtcaactat
       61 ctcttaataa tcctctatct aatttttcaa agaaagactt gatgtggatt ccatctttat
      121 taagtgacta caattagatc atagagaggg gaaaataatt aatagaatta ggaagagcga
      181 caatcactta aattatacaa agcagtgaaa attctttttt gatattagcg aaagagaaaa
      241 taagattaca taataggagt ttagatcacc agcttattga ccagtcttaa tggactttgt
      301 aaggatcatt tgatgtataa tatatatttt gaaatacaaa cgaagctact cactctatta
      361 ttgcaacaat ttcatttcgt gagacagttg atccttcttt tactttgatt tcctttatag
      421 taccctcttt ctgagacttt atagcaattt gcattttcat agattcaagg actacaatag
      481 gatctccttc ttttatttta tcaccagttg aaacagagat cttaaccact ctaccaggta
      541 tttggctagt tacgttatta gcttgatatg tagtgccttt agattttaat gttttttcta
      601 ttatttctgt tatttttgaa tgtttcttaa tttcaactac tattccatcg atataaactt
      661 tatattttgt ttccgtagaa ggaagtattt taacataatg atatgtattt tctaaaataa
      721 attcaaattc attagatgaa gattttaaaa gttttagatt atatttctga tcatctataa
      781 caaataaaag atcaccagat cctttattgt aaactaattc agcattaatt ttattagtat
      841 taccttctat ttgaaatttc attaaaaaaa gcctccatcc attgactttt gacttctatc
      901 tatacgttga cctgaataag attttttgac aaattcagac tgtaataaaa ttccagaaat
      961 cgctgcatac gctttgtctt tgtattcctg atctctttta tgtttcatct tttcaattat
     1021 attatatttt tcgatataat cagtagaaat attgccgtta acaaaatttg attcttctaa
     1081 aattgtttta tggattggta tggtagtatt tattccttca atggtaaatt cagataaagc
     1141 attcttcatt cgtatgcgtg cttcataaaa gtctccacca taggtaatta atttagcaat
     1201 tagtgaatcg taatacccag aaacattaca accagggtag agataagtat caactctcac
     1261 gccagggcca gaaggaatat tacaatttgg aacatatcct acagaaggag cgaaatcata
     1321 aaaagggtct tctgaattga tacgacattc gattgcagag ccttttagtt caagatcctg
     1381 ttgtttaaat ggtaattcct ccccttgagc gacatgaatt tgtaacttaa ctaaatcctt
     1441 gccggtaaca atctcggtaa ttggatgttc tacttgtaat ctagcattaa tttcaataaa
     1501 ataaaaattt ccttccgcat cagccaaaaa ttcagctgta cccgcattta gatagtcaag
     1561 tgcagtagat gcacgaacgg caatttcgcc tactttctct ctcttctcct tatttacaac
     1621 tggagaagga gacatttcaa taagtttttg gtgtcttctt tgaatagaac attctctttc
     1681 gaaaagatgt ctgccatttc cactagaatc tcttatcaac tgaaattcaa tgtgtctaat
     1741 atttgttaga tatttttcta taaataatgc agatttacca aaggctgctt gtgattcatt
     1801 cgacgctaat tcaaattctt gcctaagttc tttttcatcg ttaacgagtc taattccccg
     1861 tcctcctcct ccaaaagctg attttagcat taccggataa cctgcttcct tcgctatttc
     1921 cacagctaat cccatatcat caactactcc atcacttcct ggcacggtag gaacttcggc
     1981 ttttttcatg atttctttac atttcatttt gtcacctgct aactccatcg ctcttgctgt
     2041 tggtcctata aaaataatgc catttttctt acattcatct gaaaaaacgt cgttctcgga
     2101 tagaaatcca taaccagggt gtatagcatc ggccccagaa gatttggcaa tttcaagtat
     2161 cttgtctata cgaagataac tttccgaagc ttgtgaaggc cctagtcggt atgtttcatc
     2221 agctcgttta acatgtattg atctattatc gtcatctgaa taaactgaaa ttgattttat
     2281 tcccaactct ttgcatgctc ttataacccg gagggcaatc tctccacgat ttgctattag
     2341 gatgctagaa atctttgaca ttctcaacct cacctataaa tttatatttc catgcttttt
     2401 ccacggacct atttcttttt ttccggataa tgagtcaagg gcacctatta tcatagttct
     2461 agtttccatt ggatcaatga cctgatcaat gattcctttc tctgctgcaa tatatggatt
     2521 agcaaatttt ttcctaaatt cttctgctaa tttcttttta attgtttttg catctacaga
     2581 actcttaagt tctcttctat gaattattgt aattgctgct tctggaccta aaacagcaat
     2641 ttcagcagag ggccatgcaa aattaatatc tgtttttaag ttcttacttc ccatggcaat
     2701 atatgctcca ccataggcct ttccaatgat acaggtaatt ttaggtactg aagcctcaca
     2761 ataagcatat aa
//
LOCUS       DATCMF010000062         1805 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_11115, whole genome shotgun sequence.
ACCESSION   DATCMF010000062 DATCMF010000000
VERSION     DATCMF010000062.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1805)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1805)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1805
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11115"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(152..1420)
                     /locus_tag="VIL14_00755"
     CDS             complement(152..1420)
                     /locus_tag="VIL14_00755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ISL3 family transposase"
                     /protein_id="HEY8522266.1"
                     /translation="MTGKKGIKLLTDILNIEGIKVISQHPYEGIGIILQIEPSRKESV
                     CPRCGTKSHRIHQNHRHIVKDLPWGEKPVFLEINRRQFKCEKCRKPFSVRAASRREDL
                     DFIKKRRNYTKRLATQIIQEVLENDIHSVAKKRLVTTEEIERMLKDAAEEFLKSKPSE
                     LKRLGIDEIALIKGKGNYCAVLVDLDKSKLIGIMPVRTQEEMSQVMKGWGTEVLESIE
                     EVSIDLWKGYKNLVIKLMPKVQVVADRFHVMAQINKELDIQRKREKRKVEDLIKTAKS
                     PEEKAENEKVLEGLKKSKYVLLKNEADLSEEQKAKLIQVKEVSYSLKVMHQLKEEIRQ
                     IFSQTEDWLAGLFQLGRWLSEAKKYFPNSQNTIIRWLDEIIAYFDHRTTSGVIEGINN
                     KLKLIKRSAYGFRNFENYRIRCLLNWHFVC"
     gene            complement(1553..>1805)
                     /locus_tag="VIL14_00760"
     CDS             complement(1553..>1805)
                     /locus_tag="VIL14_00760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522267.1"
                     /translation="SLLPALAQADKCGKKERFVVLNKTAPIKMLPELYLNCLNSQLSA
                     SQLLTLEMLVWLLQFHKQVRIERLAACLPGSSVLSMPNT"
BASE COUNT          470 a          400 c          268 g          667 t
ORIGIN      
        1 actgaaaata cattatgctt aactgtgcca aaatcaatca acactggcat cttatcgctc
       61 tgccgaaaca taagattttc gggtgaaata tctcgatgaa taattccttt gttgtgaata
      121 tattcggttc ttcagtacgt agtatgctaa actaacaaac gaaatgccaa ttaagcaagc
      181 atctaattcg atagttttca aaatttctaa agccgtaagc agagcgttta atcaacttga
      241 gtttgttgtt aatcccctcg ataacaccac tcgtagtcct gtggtcaaag taagcaataa
      301 tctcatctag ccaacggata atagtgttct ggctattggg gaaatatttt ttcgcttctg
      361 acaaccatct tccaagttga aataatccgg ctaaccaatc ctccgtttga ctaaaaattt
      421 ggcgaatttc ctcttttaat tgatgcatta ctttaagaga ataagacacc tctttgactt
      481 gaataagttt agctttttgc tcttcactta gatctgcttc gttcttcagc aatacatatt
      541 tacttttctt caatccctct aaaacttttt cattctcagc tttctcttcc ggcgatttcg
      601 ccgttttaat caaatcttct acctttcttt tctctctctt tctctggata tctaactcct
      661 tattgatttg tgccatcaca tgaaatctat cagcaactac ttgcaccttc ggcattaatt
      721 ttattactaa attcttgtaa cctttccaca aatctatgct tacttcttct attgactcta
      781 agacctctgt tccccatcct ttcatgactt ggctcatttc ttcttgagtc ctgacaggca
      841 ttataccgat tagtttagac ttatctaaat ctactaatac tgcacagtaa tttcctttcc
      901 ctttgattag cgctatttca tcaatcccta gtcttttcaa ctcgctgggt tttgatttta
      961 aaaactcttc tgctgcatct tttaacatcc tttctatctc ttctgttgtt actaaccttt
     1021 ttttggctac actgtgtata tcgttctcta aaacttcttg tattatttgg gtcgctagcc
     1081 tttttgtata attccttctt tttttgataa aatctaagtc ttctctacga gacgctgcgc
     1141 gaacactaaa cggcttgcgg cacttttcac atttaaattg tctcctatta atttctaaaa
     1201 atactggctt ttctccccaa ggtaaatctt taactatatg tcgatgattt tgatgaattc
     1261 tatgactttt tgttccacac cgaggacaaa cactttcttt ccggctcggc tcaatctgta
     1321 aaattatccc aatcccttca tacgggtgct gcgaaattac ttttattccc tctatattca
     1381 gaatgtctgt tagcagtttg attccctttt tcccggtcat gactgtcaat gcacctcaac
     1441 agcttcttgc ttctgcttac agtcaataat aattggggtt catctgtcaa tcaaaatcag
     1501 ggttttgctc cctattcgtt cacttaattc tttctctttg ttcttggagc tactatgtat
     1561 ttggcatact aagtactgaa gaaccgggta aacaggcagc taatctttca attcgtactt
     1621 gtttatgaaa ttgcaacaac cacaccagca tttctaaggt taacagttga gatgcactaa
     1681 gttgagagtt gagacagttg agatacaatt cgggaagcat ttttatcggg gcggttttgt
     1741 taagaacaac aaaccgctct tttttaccac atttatctgc ttgagcaaga gctggaagaa
     1801 ggctg
//
LOCUS       DATCMF010000063         2579 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_537240, whole genome shotgun sequence.
ACCESSION   DATCMF010000063 DATCMF010000000
VERSION     DATCMF010000063.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2579)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2579)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2579
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_537240"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            350..1177
                     /locus_tag="VIL14_00765"
     CDS             350..1177
                     /locus_tag="VIL14_00765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522268.1"
                     /translation="MSEKVDVKILEQGDIFFFFRPKVSATDIKSIDDVRRFYMVLCPE
                     EEQKIIDDTSKDTNPKEKKIYRLFIIGKKSLPEIRKTEARSSERFWAQVGGIFYDPQN
                     LVEELTADEYKKGDAARPVGEGKYAIIEHQNHAELAFILEMPQQIGEAQKELGIQKEA
                     SYIITVINPYKPVSEGYTTAEAEHPKYPEDIQKYLNKTDGKFIPLSENLTLINYQNAQ
                     IILIGAREGKDVIKQEIGLDIETEEGKENLSSADIFTKLKIRKEQVPIKPIIEGKFQ"
     gene            complement(1220..1999)
                     /locus_tag="VIL14_00770"
     CDS             complement(1220..1999)
                     /locus_tag="VIL14_00770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEY8522269.1"
                     /translation="MKFVQISDLHVGGLFKQEAFNTLVEEINELNPDAIIISGDLTDE
                     GLVFQFKKAADEIKKFTCPNLIIFPGNHDYRHTGYLLFQKYFPSSSKQVYEFKSEKEN
                     VVILSLDTALPDRDEGEVGDSQNLWINEVLKTYDNKVIKIVAMHHHLIAIPDTGFTNL
                     VGILDSGDALRILTENSVSLVLCGHKHRPWLWNLGNLIIAYAGTSSSWRYRGIFEDTY
                     NIIEVKEKNINIDIKIVGGRRFPISELVEKYEPEKRLPFSK"
BASE COUNT          958 a          361 c          367 g          893 t
ORIGIN      
        1 atatataaat tgaaaattgt tacaaagata attccttatt ttatttcata tatttcaatg
       61 ggttttgtta tatttattct ggcaaaagca attcatcaca ctctctcaaa ataaaatcat
      121 aaaaaaaccc tatatagtga aaaattatct agttgttatc aattctgaaa catataccat
      181 taatatttgg ttatatctca gtcgtattag aatcacacaa tttcatttat ttatattctt
      241 atttgtggat gtttgtacaa taagtaaatt taaaaattat aatggaataa tttaatatac
      301 atattaaagt attttatatt ttgattccgt gatataatag tagtcgtata tgagtgaaaa
      361 agtagatgtt aaaatactag aacaaggaga tattttcttt ttttttagac ctaaagtatc
      421 tgctacggat ataaaaagta tagatgatgt ccgaagattt tatatggttc tatgtcctga
      481 agaggagcaa aaaataatag atgatactag taaggatact aatccaaagg aaaagaaaat
      541 ttataggcta tttattatag gtaaaaaatc acttcctgaa attagaaaaa ccgaagctag
      601 gtcctcagaa agattttggg ctcaagtcgg tggtattttt tatgatcccc aaaaccttgt
      661 tgaagagctg accgctgatg aatataaaaa aggtgatgca gctagacctg ttggagaagg
      721 aaaatatgct ataatagaac atcaaaatca tgcagaatta gcatttatac ttgaaatgcc
      781 ccaacagatt ggtgaagctc aaaaagaatt aggaatacaa aaagaggcaa gttatattat
      841 taccgtaata aatccatata agccagtttc agaaggatac actactgcag aagctgagca
      901 tccaaaatat cctgaagata ttcaaaaata tctcaataaa actgatggaa aatttattcc
      961 gttatccgaa aatttaacac ttataaatta tcaaaatgcc caaataatac ttattggtgc
     1021 tcgagaagga aaagatgtga taaaacagga aataggttta gatattgaaa cagaggaagg
     1081 aaaagaaaat ttatcctcag ccgatatatt cacaaagctc aaaataagaa aggaacaagt
     1141 acctataaaa ccaataattg aggggaaatt tcaataatat ctaaagtatt tataaatagg
     1201 tagattatct gattctactc tacttggaaa atggaagtcg tttttctggt tcgtattttt
     1261 caaccagttc agatatggga aatcttcttc ctcctactat ttttatatca atatttatgt
     1321 ttttttcttt cacttctata atattatatg tatcctcaaa tatacctcta tatctccaag
     1381 aagatgatgt tcctgcataa gcaattatta aatttcctaa attccataac catggtctat
     1441 gtttatgtcc acataagact agtgaaacac tattttcagt taaaattctt aaagcatctc
     1501 ccgaatctaa aatgcctact aaattagtaa atccggtatc aggtatagct attaaatgat
     1561 gatgcattgc gacaattttt ataactttat tgtcataagt ttttaatact tcatttatcc
     1621 aaagattctg actatcacct acttctcctt catctcgatc aggtaatgca gtatctaaag
     1681 aaagaatcac aacattttct ttttctgatt tgaattcata tacttgtttt gatgatgaag
     1741 ggaaatactt ctgaaaaagt agatatccag tatgacgata atcatgattg cccggaaaga
     1801 ttattaaatt cggacatgta aattttttaa tttcatcggc agctttttta aattgaaaaa
     1861 ctaggccctc gtctgttaaa tctccagaga taattattgc atcgggatta agttcattta
     1921 tttcctctac tagtgtattg aaggcttctt gtttgaataa tcctcctaca tgtaaatctg
     1981 atatttgaac gaatttcatc aaaattatca aatgctccta gtatttataa ggcaatctcc
     2041 attaagatat tttataaatc ttttatagtg aaaataaaac tattaaaaat caataacgat
     2101 gtaatagcaa gtatttaata ataaatagtt tgtgagaatg gattttaaag cattagattg
     2161 ctattgcatc aaatcttctt aaagattctg gaaaaaatgt agtacataca atgaacagta
     2221 gtacaaatga atcaagagat cccttaggat ttattagata cccaagatga cgtgtattta
     2281 ttagatcttt tcattcctag actaaattaa tcctcatcta tggctaatgt agataaatct
     2341 cttgatttag tctatgaaat tcaacccaat taacaccaga tgccttttaa agataatata
     2401 accgtggatt gacaaattgc aattattaat ggctaaatga gcaagttatt attgttcaaa
     2461 tttacaattc agaaaaattg atttacttgt ataaaaattt tcgtctttgt atagaatatt
     2521 tttatttaag taattaaatt ttcttgtagg cctaatttgt tactttataa aaaaactat
//
LOCUS       DATCMF010000064         4396 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_537506, whole genome shotgun sequence.
ACCESSION   DATCMF010000064 DATCMF010000000
VERSION     DATCMF010000064.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4396)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4396)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4396
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_537506"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(108..500)
                     /locus_tag="VIL14_00775"
     CDS             complement(108..500)
                     /locus_tag="VIL14_00775"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY8522270.1"
                     /translation="MKNILIVDDVDTSLRYKKWLEDEGFTLTLINHPNTAEQNFNPEN
                     YDLVLIGFRMSVMDGFELYKKLYEMSKKVQQDTSSSSNDFRVCFMTASRINYTVLAEI
                     HPEFGEECYVCKESPKEVFLKHVYSLIS"
     gene            complement(753..1706)
                     /locus_tag="VIL14_00780"
     CDS             complement(753..1706)
                     /locus_tag="VIL14_00780"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY8522271.1"
                     /translation="MNSLDLFNKYIEYDHIIDLWYSWLYSRLHFLLSKEVIQKFSPKN
                     VLDIGCGTGFQSFLHYIDGSRVIGIDSSVKMIKIAQRKMGSLNQSNRLMLFPEKFDFV
                     KKYNELITTLIIQHGNYHYEYPKFLVSDLYHLPFKNDKFDHINCCGSVLGLVRDIDSA
                     LLEMSRLLKVEGTLFIEVDSRWSLDTLWMMLDYFLLHKLGFYTSRNDVNKIIFSSILK
                     DIIVDYPYGEYEGFQDKNYKIKLKLFSPFALQKKFCLYNFKVLKKWNIHSITNLLPST
                     ILDKDNPSNTVKKIFTMLSSIEEKMPNLIPGCSTVYLLKKT"
     gene            complement(1712..2065)
                     /locus_tag="VIL14_00785"
     CDS             complement(1712..2065)
                     /locus_tag="VIL14_00785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522272.1"
                     /translation="MAKKDFICKKWIDKIINKDYSLDLLCSMAEEFKNYLNKFIYIDL
                     TDIISNVINFYIGVLKLKILIYLLNQKKSKKNIAREFDRVNPEFKYIKEHILKNIISQ
                     KKKEIRFTQYDITIH"
     gene            complement(2132..2626)
                     /locus_tag="VIL14_00790"
     CDS             complement(2132..2626)
                     /locus_tag="VIL14_00790"
                     /inference="COORDINATES: protein motif:HMM:NF025030.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HEAT repeat domain-containing protein"
                     /protein_id="HEY8522273.1"
                     /translation="MEIIFDEYDMRKLPPRERLDKIIQILRNERDESIRWDSVWLAGE
                     ITEVIDKDDPIFAEIADLMVWVLLNDDNGIVKHEAAFQIGVRNMKAKIPNLINSALND
                     KNELVRHEAIEALGLIRAQECKETLRKMLADPSDAVRETAVFVLKRLDRLTNRGDYKV
                     EAIL"
     gene            2750..4153
                     /locus_tag="VIL14_00795"
     CDS             2750..4153
                     /locus_tag="VIL14_00795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522274.1"
                     /translation="MRRTKNNESSAFAIKHETKYLFFGFIIAIAVAIVFIHIILFVTD
                     SDRFIGTTSAVLLGSTTCISLFIIFSNPRKIEVQKFKLLFIGITLWFIGEFSYSYYQI
                     VLDTDAPYPGVGEIFYVAGYVPLILFTYRSFKTINRDGLIKRRVIAFVVTLASVIPVI
                     STIIVFSEEVDFQSQWPDIVISTITNYSDSILLSLSILILTKLPRNNPYIYHWILFTS
                     FLILTIITDFFYLTLAIVDEEFLSKTELIWEAMWAFAYLSILASLFWYYKLIRILSED
                     SAEIYSKLVSMQSLMKEDYAAEYRDNISVKDKDQLPQEDQLHTENIQGFQLVENRIDE
                     IIKGAKDGITILFCNINTLKREETQSILKFLKNKTRSNILVRILFPLGVDDSIINSYR
                     EVANVRIFETKLENNDIIIVPDNIKFLLVSTTDPIDYDKEIAYAVTYSDNEEINYTYV
                     TMFEKLWLLQTVTKLEV"
BASE COUNT         1522 a          656 c          612 g         1606 t
ORIGIN      
        1 ttatagattg tgaaatgaaa aatatatgta ttatttttag gcgccaaaaa ataataatat
       61 cttataataa ttaaagttta gcgtataata gaaagacaat aacaaattta ggatatcaaa
      121 gaataaacat gttttaaaaa aacttctttt ggactttctt tgcaaacata acattcttct
      181 ccaaattcag gatgaatttc tgctaacact gtgtaattta ttcttgatgc agtcataaaa
      241 caaaccctaa aatcgtttga tgatgatgat gtatcttgtt gtactttttt tgacatttca
      301 tataattttt tataaagttc aaaaccatcc attacggaca ttctaaaacc aataagaaca
      361 agatcataat tttctggatt aaagttttgt tctgctgtat tagggtgatt tattaaagtt
      421 aaagtgaagc cttcatcttc caaccatttc ttatatctta aagaggtatc aacatcatca
      481 actattaaga tatttttcat taaatattat ataatataat atgtagaagt aagtaataaa
      541 caattcttta aaaatgagaa ctaaagttct acttttggct tgattgttgt ttattactct
      601 taagcattcg tttaggtata aaaaaatatt taaaatcatt gaaccatgtt aattgatgtt
      661 atctaaggga tttgaataga gatggtttta gtattcaatc aatagaaaaa atgataagat
      721 aaagaaagga atgtattaac tgaatgtatt aactaagttt tttttaataa ataaactgta
      781 ctacatccag gaataagatt aggcatcttt tcttctattg aagataacat cgtaaagatt
      841 tttttaactg tattagatgg attatcttta tcaagaattg tacttggaag taaatttgtt
      901 attgaatgaa tattccattt tttaagaact ttaaaattat ataaacaaaa ttttttttgt
      961 aatgcaaaag gagaaaaaag ttttagttta attttataat ttttgtcttg aaaaccttca
     1021 tactcgccat agggatagtc aactattata tcttttaaaa tagaagaaaa aattatttta
     1081 tttacatcat tacgtgaagt ataaaatcct agtttatgta ataaaaaata atccaacatc
     1141 atccataaag tatccaaact ccaacgtgag tcaacttcta taaataaagt tccttcgact
     1201 tttaaaagtc tactcatttc aagtagggca gaatcaatat ctctaactaa acctaaaaca
     1261 ctcccacaac aattgatatg atcaaatttg tcatttttaa aaggaagatg gtataaatca
     1321 gatactaaaa atttaggata ttcataatgg tagttaccgt gttgtattat taaagtagtt
     1381 attaattcat tatatttttt tacaaaatca aatttttctg gaaatagcat caatctattt
     1441 gattggttaa gagatcccat ttttctttga gcaattttaa tcattttcac tgaactatct
     1501 atgcctatta ctctcgaccc atctatgtaa tgaagaaatg attgaaaccc agtgccacac
     1561 cctatatcta atacattttt cggactaaat ttctgaataa cttctttaga taataaaaaa
     1621 tgtaatctag aatatagcca tgaataccac aagtcaataa tatggtcata ttctatatat
     1681 ttattgaaaa gatccagact attcattttc gctaatgaat tgttatatca tattgtgtaa
     1741 atcttatttc tttttttttt tgagatataa tattttttaa tatatgttcc ttaatatatt
     1801 taaactccgg attgaccctg tcaaattctc tagctatatt ttttttagat ttcttttgat
     1861 ttagtaaata aataagtatt tttaatttaa gtactcctat atagaaattt attacatttg
     1921 aaattatatc tgttaaatca atatatataa atttgtttaa ataattttta aattcttctg
     1981 ccatcgagca taatagatca agtgaataat ctttatttat tattttatca atccattttt
     2041 tgcaaataaa gtcttttttc gccaattctt aactactata gcctatagga atgtcaatgt
     2101 tagacttgag cagtactaat aattagatct attacagtat cgcctctact ttatagtctc
     2161 ctctatttgt cagcctatca agtcttttta atacaaaaac tgcagtttcc ctaactgcat
     2221 cacttggatc tgccagcatc tttctcagcg tttctttaca ttcttgggct cgtattagac
     2281 ccaaagcttc tatcgcttca tgtcttacaa gttcgttttt atcatttaga gcagagttaa
     2341 tcaagttagg aatcttagct ttcatgtttc gcacaccaat ttgaaaagca gcctcatgtt
     2401 ttacaattcc attatcgtca ttaagcaaaa cccagaccat taggtcggct atttcagcaa
     2461 aaataggatc atctttgtca atcacttcag ttatctctcc tgcaagccaa acagaatccc
     2521 atcgtataga ttcgtctctt tcgtttctta aaatttgtat aattttgtca agccgctctc
     2581 tcggtggcag ttttctcata tcatactcgt caaagataat ttccattctg aggtcagtta
     2641 ttttagaaga attatttaag gtttttcgct tgtacttggc tctccatcga gcatatataa
     2701 aaatattatc gaggatgctt taaataattt ataaaggata catatttaat tgagaaggac
     2761 aaaaaataac gaatcttctg cttttgcgat taagcatgaa acgaaatatt tgttcttcgg
     2821 atttataatt gctatagctg tagctatcgt gtttatacat ataatactat ttgttacaga
     2881 tagcgacaga ttcatcggca caacctcagc agttttgttg ggatcaacta cctgtatatc
     2941 cttgtttata attttttcaa atcccagaaa aatagaagtt cagaaattta agctcctttt
     3001 cataggaata actctttggt tcattggtga attttcctac tcgtattatc aaattgtatt
     3061 agatacggat gccccatacc caggtgtcgg ggaaattttc tatgttgctg gctatgtacc
     3121 tttaattcta tttacctaca gatcatttaa gactataaac agagatggat taataaaacg
     3181 tagggtgatt gcgtttgtag taacactcgc atctgtaata cctgtaatat caactatcat
     3241 agtttttagc gaggaagtag attttcaatc ccagtggcct gatattgtga ttagtaccat
     3301 aactaactac agcgatagta ttttattatc tctttcaatt ctcattctaa caaagttacc
     3361 cagaaataac ccttatatct atcactggat attatttacc tcttttttaa tattaacaat
     3421 tatcacagat ttcttctatc ttacgttagc aattgttgat gaagaatttc tttcgaagac
     3481 tgaattgata tgggaagcga tgtgggcgtt cgcctatcta agtattctag cctcattatt
     3541 ttggtattac aaacttattc gtatattaag cgaagactct gcagaaatat atagtaagct
     3601 ggtgtctatg cagagtttaa tgaaagaaga ctatgcagca gaatatcggg ataatatttc
     3661 ggtcaaagac aaagatcaac ttccccaaga ggatcaattg catacagaaa acatacaagg
     3721 tttccaattg gttgagaatc gtattgatga aataataaaa ggcgcaaaag acgggatcac
     3781 tattttattc tgtaatataa ataccttgaa aagagaagaa acacaaagta tcctaaaatt
     3841 tttgaagaac aaaacaaggt caaatatttt agtaagaatt ctttttccgt tgggtgtcga
     3901 tgatagtatt attaatagtt atagagaggt cgctaatgta cggatctttg aaaccaaact
     3961 agagaataat gatatcatca tagtccctga caatattaag ttcctactag tttcgactac
     4021 agatcctatc gattatgata aggaaatagc gtatgctgta acatattctg acaacgaaga
     4081 gataaactat acatatgtaa caatgtttga aaaattatgg ttacttcaga ccgtgacgaa
     4141 attggaggta tgataagcat catcatttat cagatgaacc tgttcaatca tacaacttta
     4201 tagtcaattt atgaaatgtc cttactgcag tgtgttgctt cgtctctggt atatatctat
     4261 gattagtcaa aaataaattt acaagcaaat ccaattttct attatgttga aaaatataaa
     4321 agatagatga attcttggaa aaacttcgag atataactga ttaaataaat tttttatatt
     4381 agaatatctg aatatt
//
LOCUS       DATCMF010000065         3145 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_537598, whole genome shotgun sequence.
ACCESSION   DATCMF010000065 DATCMF010000000
VERSION     DATCMF010000065.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3145)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3145)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3145
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_537598"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            84..1631
                     /gene="guaA"
                     /locus_tag="VIL14_00800"
     CDS             84..1631
                     /gene="guaA"
                     /locus_tag="VIL14_00800"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003922 - GMP synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016462 - pyrophosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006177 - GMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HEY8522275.1"
                     /translation="METELKLDKIIILDFGSQYSHLICRRIRDANVFCEIYPYNLTSE
                     QIKDLSPNGLVFSGGPASVYAENSPKPDKKIFELGIPILGICYGHQIIVDNFKGKVKR
                     SKTREYGKAILTIDDKSDLFLNLDKSINCWMSHGDVAEKTPSGFKVLAHTESSFAAAI
                     GNQEKKFYGIQFHPEVVHTENGFEILKNFSINISKAKPEWDMTNFVESTIENIKKKVG
                     NDKILCAVSGGIDSTTVAVLLNRAVHDNLQCIFVNHGLLRYGEESMVMDRLTQIGLNV
                     IYIDASEKFLTKLKGITDPEEKRKIIGHEFITVFQEEVNEKEQFRWLAQGTLYPDVIE
                     SGISIGPASIIKTHHNVGGLPTVLNLKVLEPLRHLYKDEVKKVAKILQVPEDLLNRHP
                     FPGPGLAVRIIGEITPEKIRISKHASKIVEDELITENLYNSVWQAYASVGDDKAVGVV
                     GDERLYGNIVTIRIVNSVDAMTADWTKLPYPLLERISNRITNEVEGVSWVTYAISSKP
                     PATIEPQ"
     gene            2035..2163
                     /locus_tag="VIL14_00805"
     CDS             2035..2163
                     /locus_tag="VIL14_00805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522276.1"
                     /translation="MSEESVRCPYCESLFNNKVDLSKHIDRIHLGSGLLEGDSSKF"
     gene            2353..>3145
                     /locus_tag="VIL14_00810"
     CDS             2353..>3145
                     /locus_tag="VIL14_00810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522277.1"
                     /translation="MEHIKFELIYALTKSSKSLNIELISINGSFISDGKFLIIPDPYQ
                     KFSSLEVSDNELVDSNKTIGVISIKGISNSNYTVTQKASNNNYLPNTISKVAEINDEN
                     PISSVLFVNNFNFTSEKPEIYTSKSFTYNAKFVCGSIRGDEGPLRPGHYDTDISIYNK
                     QNYPITLIWNAVFNNSNSSNSMLNTVNPKQSIGLVCKDIKQLAHLNPQDTDLLEGFVI
                     IQIEENNISSGTKERFTNEPVSIQVFYSANALDSLPQQTLVEKFVF"
BASE COUNT         1168 a          408 c          507 g         1062 t
ORIGIN      
        1 ttatagagaa aaagaaagac taactgatat tattaatacc tcggcatggg tattgacgag
       61 aatgttagaa aaagagaata cttttggaaa cagaacttaa attggataaa ataattattc
      121 tagattttgg ctctcaatac agtcatctta tatgtagaag aataagagat gcaaatgttt
      181 tttgtgaaat ttatccctat aatctcacgt ctgagcaaat taaagatcta tctccaaatg
      241 gtctagtttt ttctggggga ccagcgagtg tatatgctga gaattctccc aaacctgata
      301 aaaagatatt tgaacttgga ataccaattc taggaatatg ttatggacac caaataattg
      361 ttgataattt caaagggaaa gttaaaagat ctaagactcg agaatatgga aaagcaatat
      421 tgacaataga tgataaatca gatctttttc ttaatttaga caaaagtata aattgttgga
      481 tgagtcatgg tgatgtagca gaaaagactc ctagcggatt taaagtatta gctcacacag
      541 aaagttcttt cgcagcagcg ataggaaatc aagaaaagaa attctatggg attcagtttc
      601 atcctgaagt tgttcatacc gaaaatggtt ttgaaatttt gaagaatttt tctatcaata
      661 ttagtaaagc aaaacctgaa tgggatatga caaattttgt cgagtctact attgaaaata
      721 taaagaaaaa agtaggaaat gataaaatct tatgtgccgt tagtggaggg atagattcta
      781 ctactgtagc agttctatta aatcgtgctg tccatgataa tttgcaatgt atctttgtta
      841 atcatggttt acttagatat ggtgaagaat ctatggtaat ggaccgttta acacaaatag
      901 gtttgaatgt aatctatatt gatgcttcag aaaaattttt aactaaatta aaaggaatta
      961 cagatcctga agaaaagagg aagataatag gtcacgaatt tattactgtt tttcaagagg
     1021 aagtgaacga aaaagaacaa tttcgatggc tagcacaagg aactttatat cctgatgtga
     1081 tagaaagtgg tatttctata ggtcccgcat caataataaa aactcatcat aatgttggcg
     1141 gccttcctac tgtccttaat ctcaaggtat tagaaccctt gagacatctt tataaagatg
     1201 aagttaaaaa agtcgctaag attctgcagg ttccagagga tcttttaaat agacatccgt
     1261 ttccaggacc tggactggct gttagaataa taggagaaat aacaccagaa aaaataagaa
     1321 tttcaaaaca tgcaagtaaa attgttgagg atgagcttat tactgaaaat ttatataatt
     1381 ctgtttggca agcctatgcc tcggtaggtg atgataaagc cgtaggggta gtcggagatg
     1441 aacggctata tggtaatatt gtgactataa gaatagtaaa ttcagtagat gcaatgacag
     1501 cagactggac aaagctaccg tatccattac ttgaaagaat cagtaataga attacaaatg
     1561 aagtagaggg agtgtcatgg gtaacatatg caatatcaag taaaccccct gcaactatag
     1621 aaccacagta atttaattat tttataaatt gtgatctttt acgtaacaat tattttttta
     1681 gtaatttcta gattttgtta tattataaat ttctgagtac tataaattgg aattcttcaa
     1741 atatgaaata tgaaataatt accattacat tgtaactaaa atatctcgta atattattat
     1801 ataaattcaa aaataggtaa tgataaagaa ctaattttat tgcctacatt tttctttctg
     1861 ttgatcaata gaaacctatc tctcaataat taagcattgt cagaagaaag ttaaatgacg
     1921 atcaaaggcc tctaatctaa tatgatttgt tattaggaat atattaatca taacagtatt
     1981 attataacca aaatattaac taaattaata aagcagttgt atattatatt tgttatgtct
     2041 gaagaatcag ttcgatgtcc gtattgtgaa tcattattta ataataaggt tgatctatct
     2101 aaacatatag atagaattca tctaggttct ggtctattag agggtgattc aagtaaattc
     2161 taatgtatat ttgttatcat tatataaaat aacactttaa catctctacg tgaatcggca
     2221 atacgctttt atattttatt taaaattttt tgatcttgat aagtataaat tatatatttt
     2281 ctaattatag tattaatgaa aattttaatg ttattttttt tatttattac catcatctta
     2341 acttttcttt atatggaaca tataaaattc gaattaattt atgcattaac aaagagttcc
     2401 aagtcgttaa atatagaatt aatttctatt aatggttctt ttatatctga tggcaaattt
     2461 ctcattattc ctgatccata tcaaaaattt tcaagtctag aagtatctga taatgaattg
     2521 gtggattcaa ataaaactat aggagttatt tctattaaag gtatttcaaa tagtaattat
     2581 actgttacac aaaaagccag taataataat tatttgccca atacaatttc aaaggtagct
     2641 gaaattaatg atgaaaatcc aatttcttca gttttatttg taaataattt taattttaca
     2701 tctgaaaaac ctgagattta tacatctaag tctttcacat ataatgctaa atttgtatgt
     2761 ggttctatca gaggagatga aggcccgtta cgacctggac actatgatac tgatatcagc
     2821 atttataata aacaaaatta tccaattaca ttaatttgga atgccgtatt taataatagt
     2881 aattcgagca attccatgct aaataccgtt aatccaaaac aatcaattgg attggtatgc
     2941 aaagatataa aacagttagc acatttaaat cctcaagata ccgacttatt agaaggattt
     3001 gtaataatcc aaattgaaga aaataatata tcttcgggaa ctaaggaaag atttacaaat
     3061 gaaccagtta gtatacaggt attttatagt gctaatgcac ttgactctct tccacaacaa
     3121 actttagtag aaaaatttgt tttcg
//
LOCUS       DATCMF010000066         1912 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_405346, whole genome shotgun sequence.
ACCESSION   DATCMF010000066 DATCMF010000000
VERSION     DATCMF010000066.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1912)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1912)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1912
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_405346"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..424
                     /locus_tag="VIL14_00815"
     CDS             <1..424
                     /locus_tag="VIL14_00815"
                     /inference="COORDINATES: protein motif:HMM:NF014010.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PhoU domain-containing protein"
                     /protein_id="HEY8522278.1"
                     /translation="CYFKDNGWRKKVFELSEKLRSLEDEIGDIAVELIARYQPVAKDL
                     RFIRASMEIAYILWRFGRHSYDIIDTIEALHPGLDCDKTIVMEMSYIVRRIVEISLQC
                     LRTKDETLVKTLYEMDATVDALYRTCLRGIISGDNREN"
     gene            646..1755
                     /locus_tag="VIL14_00820"
     CDS             646..1755
                     /locus_tag="VIL14_00820"
                     /inference="COORDINATES: protein motif:HMM:NF014010.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoU domain-containing protein"
                     /protein_id="HEY8522279.1"
                     /translation="MVISVSNHSNNEVRRIQFTGRSTYILSLPKKWMNEMNLKAGDLV
                     NIVRDTNHSLSIVPNSLRSSDSLNEATALIAQVESGNSLKRKVISMYLAGYNIVHLKS
                     KSGRISPAQRDAIREVIRRNLVGTEIIADSSEIITVQVLLTLPELSVNTAVRRMFLIA
                     TAMHKDAMSALGELNHELAEAVIKSDDEVDRFSLYILRNLVMATQNERALQEMGLKGT
                     ADCLSYRVAVKSIERVADHAVGISSKHLRLNQKITKEAFDKIQKMSQLSLSVLSDSVE
                     AFLRRDYVLADSVVDKAEDMRNLEADVISFLDKQNGIRGESANVDIKIILEDIRRTAE
                     HASDIAEAAMNQTIREVIQVRAAPQREKEKDTVGA"
BASE COUNT          631 a          330 c          412 g          539 t
ORIGIN      
        1 ttgttatttc aaagataatg gctggcgaaa aaaagttttt gaactatctg agaaacttcg
       61 gagcctcgag gatgaaattg gtgatattgc agtggagcta atcgcacgat atcagccagt
      121 cgcaaaagac cttcgattca ttcgggcttc tatggaaata gcatacattt tatggcgatt
      181 tggaagacac tcttatgaca taatagacac aattgaagca ttacatccag gcttagactg
      241 tgacaagact attgtgatgg agatgtctta catagtgcgt agaatagtgg aaataagtct
      301 ccaatgtcta cgaaccaagg atgaaaccct agtaaaaacc ctatacgaaa tggatgcaac
      361 ggtggatgca ctctatagaa catgccttcg gggcatcatt agtggagaca atcgtgaaaa
      421 ctgaaatatt cgatcacaat gcgatattcg taatatactc atcttaaaat tccgtgaacg
      481 catatccgat catgcgtgtt atctgggaga ttgtgtattt tttttggtga ctggcgaatc
      541 tagcccaagg cgataatttg catatctata taatgtacat agtattacta ttgactatat
      601 gaatacttgt gataatatgt attaactaaa ggatggccat aataaatggt gatttctgta
      661 tctaaccaca gtaacaatga agtacgtaga atacagttta ccggtcgttc gacctatatt
      721 ctatctttac ctaagaagtg gatgaacgag atgaatttga aggcaggcga tctcgttaac
      781 atagttagag atacaaatca ttctttgtca atagttccaa attctttgag atcctctgac
      841 tcccttaacg aagcaaccgc attaatagca caagtcgaaa gcggaaattc attgaaacgg
      901 aaggtaatct ctatgtattt ggccggatat aatattgtgc atctaaaatc gaaatctggg
      961 aggataagtc cagcgcagag ggatgcaatt agagaggtaa tccgccgtaa cttggtagga
     1021 actgaaataa tcgctgactc ttcagaaatt ataactgtcc aggttttact tacccttcct
     1081 gaattgtctg taaacacagc tgtacgaaga atgtttctta ttgcaaccgc aatgcataaa
     1141 gatgctatgt ctgcattagg tgagctaaat catgagttgg cagaagccgt aataaagtca
     1201 gatgacgaag ttgacaggtt cagcctatat atcttaagga atcttgtgat ggccactcag
     1261 aatgaacgtg ctttacagga aatgggtctg aaaggaacag cagattgctt gagctatcgt
     1321 gttgccgtca aaagcattga aagagtggct gatcatgctg taggaatatc tagtaaacat
     1381 ttaaggctta atcagaaaat tacaaaagag gcctttgaca aaatacaaaa gatgagtcaa
     1441 ctatctcttt ccgtgcttag tgattctgtc gaggcctttc taagaaggga ctatgtttta
     1501 gctgatagtg tggtggataa agctgaagat atgcgtaatc tggaggcaga tgttatctct
     1561 ttcctcgaca aacaaaatgg tattcgcggt gaatctgcaa atgtagatat taaaatcatt
     1621 ttggaggata ttagaaggac tgccgaacat gctagtgaca tcgcagaggc ggctatgaac
     1681 caaactattc gagaagtaat acaagtaaga gcagctccac agcgggaaaa ggaaaaagat
     1741 acagtaggag cttaacctta gattctcaca gataatagtt attcaaactg ctttttctca
     1801 ttattcttta ggccacaaaa gctccaacta gaaagactat gtagaagaaa aagaagttta
     1861 aaacctagcc ggctctaatt atgtccctat gtgatttcca caagaaggga tt
//
LOCUS       DATCMF010000067         1578 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_74211, whole genome shotgun sequence.
ACCESSION   DATCMF010000067 DATCMF010000000
VERSION     DATCMF010000067.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1578)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1578)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1578
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_74211"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..370)
                     /gene="ureC"
                     /locus_tag="VIL14_00825"
     CDS             complement(<1..370)
                     /gene="ureC"
                     /locus_tag="VIL14_00825"
                     /EC_number="3.5.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018102.1"
                     /note="ureases catalyze the hydrolysis of urea into
                     ammonia and carbon dioxide; in Helicobacter pylori the
                     ammonia released plays a key role in bacterial survival by
                     neutralizing acids when colonizing the gastric mucosa; the
                     holoenzyme is composed of 3 ureC (alpha) and 3 ureAB
                     (gamma/beta) subunits; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urease subunit alpha"
                     /protein_id="HEY8522280.1"
                     /translation="MVLKLTRKQYTDLFGASQGDKIRLGDTDIIIEVEKDLISPGDEC
                     VFGGGKTIRDGLAQASGVTNANGALDYVITNAVVLDPIVGIVKGDIGIKDGKIAGIGK
                     AGNPLVMDNVTSNMIVSACTE"
     gene            complement(385..759)
                     /locus_tag="VIL14_00830"
     CDS             complement(385..759)
                     /locus_tag="VIL14_00830"
                     /EC_number="3.5.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0035550 - urease complex [Evidence IEA];
                     GO_process: GO:0043419 - urea catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease subunit beta"
                     /protein_id="HEY8522281.1"
                     /translation="MIPGEYILSSDPVICNGNKKTVTITVNNTGDRPCQVGSHTHFFE
                     VNKVLDFPREKAFGYRLNIPAGTSIRFEPGDSREVELCELGGKKIVYGFNGLTMGGLK
                     STVAKQAALEKAKKLGFKGFSS"
     gene            complement(824..1123)
                     /locus_tag="VIL14_00835"
     CDS             complement(824..1123)
                     /locus_tag="VIL14_00835"
                     /EC_number="3.5.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009039 - urease activity [Evidence IEA];
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA];
                     GO_process: GO:0043419 - urea catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease subunit gamma"
                     /protein_id="HEY8522282.1"
                     /translation="MLVPREIDKMMIWTAAQIAEGRKKRGVKLNHPESVAYIANFVVE
                     GAREGKSVAELMKSAREVLSRNDVMDGIPELIHTVQVEATFPDGTKLVTVHDPIQ"
     gene            complement(1238..>1578)
                     /locus_tag="VIL14_00840"
     CDS             complement(1238..>1578)
                     /locus_tag="VIL14_00840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522283.1"
                     /translation="AGLGPFPYMIISQKKQESKIKDSAKLQIDKILHDQNLDCIINYN
                     DILKIVIKRGSNSVVRNMLGSFIAKNYMTIFTKNNEYEYILPTKKNGEFHKMSYWMKS
                     ILPVQISLIE"
BASE COUNT          474 a          316 c          197 g          591 t
ORIGIN      
        1 cctctgtaca ggcagaaact atcatatttg acgttacatt gtccattact aacggatttc
       61 ctgctttacc gattcctgca attttaccat cctttatacc aatatctcct ttaactattc
      121 caacaatcgg atcaagaaca acagcattcg taattacata atcaagtgca ccattagcat
      181 ttgtgactcc tgatgcttga gcaagtccat ctctaattgt tttacctcca ccaaatacac
      241 attcgtcacc aggagagatc agatcttttt caacttctat aataatatca gtatctccta
      301 gtctgatttt atctccttga gaggcaccaa aaagatcagt atattgtttt ctagttaatt
      361 ttaaaaccat actcttctca tctcctaaga actaaatccc ttaaacccaa gttttttcgc
      421 tttttccagt gccgcttgtt tagccactgt cgatttaagt cctcccatag taagaccatt
      481 gaatccatag acgatttttt ttcctccaag ttcacaaagt tctacttcac gagaatctcc
      541 tggttcaaat cttatagaag ttcctgcagg aatatttaat ctatatccaa atgctttctc
      601 ccgtggaaaa tctaaaactt tatttacttc gaaaaagtga gtatgtgatc ctacttgaca
      661 tggtctatca ccagtattat ttacagttat agttacggtt tttttgttac cattacaaat
      721 aactggatca gaagataaaa tatattctcc tggtatcact ttaagagtta cctccttcct
      781 tttctaaatt tttttcaata attttattca ttttttttct cctctattga attggatcat
      841 gaactgtaac taattttgtt ccatctggaa aagtcgcttc tacttgaact gtatgtatca
      901 actctggtat tccgtccata acatcgtttc tagacaaaac ctctctcgct gatttcatta
      961 actctgctac acttttcccc tctctagcac cttcaacaac aaaatttgct atgtatgcta
     1021 cggattcagg atgattaagt ttaacacccc ttttttttct accttcagca atttgtgccg
     1081 cagtccaaat catcatctta tcaatttcac gtggaactaa catcaaattt ccaattcacc
     1141 tgaaataata ctggatttgg attattttaa atttcaaata attaaattat ataaatggat
     1201 atatacaaat ttatctaatt agccgacgtc ggcaaaatca ctctattaac gaaatttgca
     1261 caggtaaaat agatttcatc caatacgaca ttttatgaaa ttcaccgttc tttttagtag
     1321 ggagaatata ttcatattca ttattttttg taaaaattgt catatagttt ttagcaataa
     1381 aggaacctag catgtttcgg actactgaat ttgatcctcg ttttataaca atttttaata
     1441 tatcattata attaataata caatctaaat tttggtcatg taaaatttta tctatttgta
     1501 gttttgctga atctttgatt tttgattctt gttttttttg agagattatc atatagggaa
     1561 atggtccaag gcctgcta
//
LOCUS       DATCMF010000068         2221 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_537927, whole genome shotgun sequence.
ACCESSION   DATCMF010000068 DATCMF010000000
VERSION     DATCMF010000068.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2221)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2221)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2221
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_537927"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(604..2145)
                     /locus_tag="VIL14_00845"
     CDS             complement(604..2145)
                     /locus_tag="VIL14_00845"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003852 - 2-isopropylmalate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019752 - carboxylic acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HEY8522284.1"
                     /translation="MDNKRNKNFKSNPHIDDQIRIFDTTLRDGEQTPGVSVNPEKKIK
                     IAFRLDELGVDAIEAGFPIVSQGERESIKTIAKQGLKANIYGLARSVQADIDAALACD
                     LEYIHTFIATSDIHLKYKLNMTKEQVLEHAIRAVEYAKKHGLQVEFSAEDATRSDRDF
                     LIRVFKAVQAAGADRIDIPDTVGYATPEYISSLVKEVANNISLPISMHCHDDFGQAVA
                     NSIAGINSGANCAHVTINGIGERAGNASLEEFVMSLHCLYNKKTNIHTQLLYETSKFV
                     SNTMGIIVQPNKAIIGENAFGHESGIHTHGIINNPLTYEPISPELVGRKRWLQAGKHA
                     GAHGIKAMLNEFGVEPTDEELQKIVEQQKIISDKGKSITTAELLSISGHVMGNTKFEE
                     KFTLHDFHIVTGLNIIPTAVIQLSTQGKEYIASEIGVGPVDSALKAIQKIAVEVAKIK
                     VREYRLESITGGSDALAEVSVKVEDNFGNVVSARKSGADVVVASVQAMMDAINKVMLR
                     KVLES"
BASE COUNT          723 a          386 c          325 g          787 t
ORIGIN      
        1 ttaataacgt tatattaaat gctagaatga aacttaaggt ttggaccaat tcttagacac
       61 attgattttc aagaataaga attagatctt atagtaatga cagatcagcg gaacagtata
      121 atacaattaa aaaatatatt tatcaatgat aaaactcacc tcttatacta taaattatat
      181 ctaaaaaatt aaaccatttt atgagatgtc tcaaagaatt tggaatcatt taagataaat
      241 aaatttgtaa tttcaaattc ctagagagaa gtagatttaa aagtattttt aattgaagac
      301 aatttatcaa taaagtatat aatgaaaaaa taataaaaat atagcaatat tttaaaagat
      361 tgtttatctt ttataaattg ttgcatggta aatatgagtc ttctctgatt ttatatttta
      421 aagtacgagc atatgtaaat actgctaatg tcattgaaaa cttgtctcac tatttaagaa
      481 ggatctcaaa gaacagaggt aaaaaaaata gcagtcttta aaaataaaag aatgcttaat
      541 tacctttgaa caattataaa aaacgagagc aagatgaaaa aatgattcta gaaaaacagt
      601 aatttaagat tctaaaactt ttctcagcat taccttgttg atggcatcca tcatggcttg
      661 gacggaagca acgacgacat ctgctccaga tttcctagcc gaaacgacgt ttccaaaatt
      721 gtcttcaact ttgactgaaa cctcggctaa ggcatctgat ccacctgtga tagattcaag
      781 tctatattcc cttactttta ttttagcaac ttccacagct attttctgga tcgctttgag
      841 agcagaatca actggtccaa ctcctatttc tgatgcaata tattccttac cttgagtact
      901 taattgtatt actgctgttg gtataatatt taaacctgta actatatgga aatcatgtaa
      961 cgtaaatttt tcttcaaatt ttgtatttcc cattacatgt ccggaaattg ataacaattc
     1021 tgcagtagta attgattttc ctttgtcaga aataattttt tgttgttcaa caattttttg
     1081 taattcttca tcagttggtt ctacaccaaa ttcatttaac attgctttga ttccatgagc
     1141 gcctgcgtgt ttgccggctt gtaaccatct ttttcttcca acgagttcag gactaatagg
     1201 ctcataagtt aaaggattat taataatccc atgagtatgg atcccggatt catgaccaaa
     1261 tgcattttca ccgataatcg ctttatttgg ttgaacaatt atccccatcg tattggaaac
     1321 aaatttagat gtttcatata atagttgtgt atgtatattt gtttttttat tatataaaca
     1381 atgcaatgac attacaaatt cttcaaggga tgcattccct gctctctcac ctatgccatt
     1441 tatagttaca tgagcacaat ttgcacctga atttatacct gcaattgaat tagcaacagc
     1501 ctgaccaaaa tcatcatgac aatgcatgct tattggtaat gatatattat ttgcaacttc
     1561 ttttactaga ctagatatgt actctggggt tgcgtaccca actgtatctg gtatatcaat
     1621 tcgatctgct cctgctgctt gaactgcttt aaaaactcga atcaaaaaat ctctatctga
     1681 acgcgttgca tcctctgctg aaaattcgac ttgtagccca tgtttttttg catactcaac
     1741 tgcccgaatt gcatgttcta ggacttgttc tttagtcata tttaatttat atttcaaatg
     1801 aatatcagaa gtagcaataa aagtgtggat gtattctaaa tcgcaagcta atgccgcatc
     1861 gatatctgct tgtaccgatc tagcaagtcc ataaatgtta gcttttaaac cttgtttagc
     1921 aattgtcttt atagattccc tttccccttg agaaacaata ggaaagcctg cctcaattgc
     1981 atcaacaccc agttcatcta gtctaaatgc tattttaatt tttttttctg gatttacgga
     2041 gacacctgga gtctgttctc catctcttaa tgttgtatca aaaatccgga tttgatcgtc
     2101 aatatgagga ttacttttaa agtttttgtt cctcttatta tccatcttta aactcctcta
     2161 ggtaaggcag aaataccagt tcttgcaatt tggataattc catatggatc tacaatactc
     2221 t
//
LOCUS       DATCMF010000069         2689 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_405539, whole genome shotgun sequence.
ACCESSION   DATCMF010000069 DATCMF010000000
VERSION     DATCMF010000069.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2689)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2689)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2689
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_405539"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..868
                     /locus_tag="VIL14_00850"
     CDS             <1..868
                     /locus_tag="VIL14_00850"
                     /inference="COORDINATES: protein motif:HMM:NF012795.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HEY8522285.1"
                     /translation="DVVKQMKIWQIARKSIVSAVSDMSAKGIKPPYFSLLSLAIPSSW
                     TKNKIKNLILGFKKASKEFGIVYLGGDTNESKELVIDCTLIGFLDSTSNSIPLRNNAK
                     AGDIVITSGEFGYTSAGLKILLFNSKAIPSFKKQAISRILLPKPNQKFGISLGKYFSS
                     SIDSSDGLGISLYELAKQSKVDFYIDDIPVPRGLIEFAKNNSLDIYDLIFNGGEEYEI
                     LATINPSNLQKVNFLAKKFHLPMFVIGKAMIGSGNVFSKYDNKLELFHGRKIEKRKDY
                     FLIENKGFLHFS"
     gene            915..1322
                     /locus_tag="VIL14_00855"
     CDS             915..1322
                     /locus_tag="VIL14_00855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HEY8522286.1"
                     /translation="MSETEDVTQYKWGVAHIFSSYNNTLVHITDISGAETISFSSGGR
                     HVTADRYESSPYAAMKSALSAADTAKSKGINALHIRVRAVGGVGPRIPGPGAQAAIRA
                     LARAGFRIGRIDDVTPVPHDTTRKPGGRRGRRV"
     gene            complement(1501..1917)
                     /locus_tag="VIL14_00860"
     CDS             complement(1501..1917)
                     /locus_tag="VIL14_00860"
                     /inference="COORDINATES: protein motif:HMM:NF014086.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HEY8522287.1"
                     /translation="MGEDPDIEILKAKKMQEIMQRMMKQKKENIEKEIKKREPSEREI
                     LLSHLYDRGDEVLNLAESQFPSETRAIINRIVELINSGEINRKISGGELLSLFRTIGM
                     NIKINTTIKIEEHGKYMSFAEKLKQNKEIDDEENKR"
     gene            complement(1918..>2689)
                     /locus_tag="VIL14_00865"
     CDS             complement(1918..>2689)
                     /locus_tag="VIL14_00865"
                     /EC_number="6.5.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008452 - RNA ligase activity [Evidence
                     IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="RtcB family protein"
                     /protein_id="HEY8522288.1"
                     /translation="KGQITVLIHCGSRGFGHQVCSDYLRYSEKSLKKYNIELIDRELA
                     CVPNNSIEGENYRKAMYSALNFAWSNRQIITHFTRKTFEKIFSSTETELDMKLVYDVA
                     HNIAKVERHKVDGQGMRDLVIHRKGATRAFPAGMEQVPEKYRQIGQPVIIPGSMGTAS
                     WILVGNKKSLDLSFGSTAHGAGRTMSRGAAKRSYTVEKVKAELDSKGIYIKALTKNGI
                     VEETPLAYKDVDSVVNVSDKLGIATKVAKLVPIGVIKG"
BASE COUNT          865 a          433 c          396 g          995 t
ORIGIN      
        1 tgatgtagtt aaacaaatga aaatatggca aatagcaaga aaaagtattg tttctgctgt
       61 tagcgatatg tctgcaaaag gaataaaacc accgtatttt tcgttactat cattagcaat
      121 tcctagctct tggacaaaaa ataaaataaa aaacctaatt ttgggattca aaaaagcctc
      181 taaagaattt ggtatagttt atcttggagg tgataccaat gaatctaagg aactagttat
      241 tgattgtact ttaattggtt ttttggattc tacatctaac agtattcctt tgagaaataa
      301 tgctaaagct ggagatattg taataacgtc aggagaattt ggttatacat cggcaggatt
      361 aaaaatattg cttttcaatt caaaagcaat accttctttt aaaaaacaag ctatatcacg
      421 tattctactt ccaaaaccta atcaaaaatt tggaatatca ttgggaaagt atttttcatc
      481 atcaattgat tctagtgatg gattagggat ctctctttat gaattggcta agcaaagtaa
      541 agttgatttt tatattgatg atattccagt tcctagaggt ctaattgaat ttgcaaaaaa
      601 taattctcta gacatttatg atctgatatt taatggtggt gaagaatacg aaatattagc
      661 tacgatcaat ccctcgaatt tgcaaaaagt aaattttctt gcaaagaaat ttcatttacc
      721 aatgtttgta ataggaaaag caatgattgg gagtggtaat gtttttagta aatatgataa
      781 taaacttgaa ttgtttcatg gaagaaaaat tgaaaaacgt aaagattatt ttctaataga
      841 aaataaaggg tttttacatt tttcataata tattaacaaa gttttaatat ccaaattaag
      901 tgaattataa gattatgtct gaaactgaag atgttactca gtataaatgg ggagtagctc
      961 atatttttag cagttataat aatactttag ttcatattac cgatattagt ggtgctgaaa
     1021 caatatcgtt tagttctgga ggtagacatg taactgcaga taggtatgaa tcatcacctt
     1081 atgcagcaat gaaatctgcc ttatctgccg cagatacagc aaaatctaaa ggaataaatg
     1141 cacttcatat tagagtgcgc gcagttggag gagtaggacc tagaataccc ggtccaggag
     1201 ctcaagctgc aataagagca ttagctcggg ccggttttag gatcggaaga attgatgatg
     1261 ttactccagt tcctcatgat acaaccagaa agcctggtgg cagaagagga agaagagtgt
     1321 aacattacaa tactttttac tttttcgtaa gtagaatata accaagcatt aaaaatttta
     1381 tgaaagtata tacagagata taattacaat aataaattac cgatattact atcattttta
     1441 atgatataaa aataaattaa aaaaaataaa tatttgatga aatgtatatt tatttacatt
     1501 ttatctttta ttttcttcat cgtcaatctc tttattctgc ttaagtttct ctgcaaatga
     1561 catatatttt ccatgttctt caattttgat agtagtattt attttaatat tcattcctat
     1621 tgtgcgaaat aacgatagta attctcctcc cgaaattttt cggtttattt ctccactatt
     1681 aataagttct actattctat ttattattgc tctagtttct gatggaaatt gagattctgc
     1741 taaatttaat acttcatctc cccgatcata caaatgtgat agtaagatct ctctttcgga
     1801 cggctcacgt tttttaatct ctttttctat gttttctttt ttctgtttca tcatacgttg
     1861 cattatttct tgcattttct tagctttaag aatttcaata tctggatctt ctcccattta
     1921 acctttaatc actcctattg gaactaactt tgctacttta gttgcaatcc ccaatttatc
     1981 tgatacattc actactgagt ctacatcttt ataagctaaa ggtgtttcct ctactattcc
     2041 attttttgtt aatgctttta tatagatccc ttttgaatcc agttcagctt ttactttttc
     2101 aactgtataa cttcttttag ctgcacctct tgacatagtt cttcctgctc catgtgcagt
     2161 tgatccaaaa cttaaatcaa gagatttttt atttcccact aatatccaac ttgctgttcc
     2221 catcgatccg ggtataatta caggttgacc tatttgtcga tatttctctg gaacctgttc
     2281 catacctgct ggaaaagctc tggtggcacc ttttctatga attactaaat ctctcattcc
     2341 ttgtccatca accttatgac gttctacttt ggctatatta tgtgctacat cataaaccaa
     2401 tttcatatct aattctgttt ctgtactcga aaatattttc tcgaatgttt ttctagtaaa
     2461 atgagtaatt atttgcctat tggaccatgc aaaattcaaa gctgaataca tcgcttttct
     2521 ataattttct ccttcaattg aattatttgg aacacatgct agttctctat caattaattc
     2581 aatattatat tttttcaaag atttttcgga ataacgtaaa taatcactac aaacttgatg
     2641 accaaatcct cgtgacccac aatgtatgag tactgttatt tgacctttt
//
LOCUS       DATCMF010000070         1554 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_608324, whole genome shotgun sequence.
ACCESSION   DATCMF010000070 DATCMF010000000
VERSION     DATCMF010000070.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1554)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1554)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1554
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_608324"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..226)
                     /locus_tag="VIL14_00870"
     CDS             complement(<1..226)
                     /locus_tag="VIL14_00870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522289.1"
                     /translation="MSDFRNKKEENIQEIQRFIVHPLIKNNSIESRLYQNIIFNSSKD
                     KNSLIVLPTSLGKTVISALICAEILYNYKHT"
     gene            complement(464..>1554)
                     /locus_tag="VIL14_00875"
     CDS             complement(464..>1554)
                     /locus_tag="VIL14_00875"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: protein motif:HMM:NF016724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEY8522290.1"
                     /translation="GCIILPTGSGKTIIAIKLIEIINSSTLIVVPTLDLMEQWTRILS
                     KYFQKIEIGNIGGGISNITGITVSTYDSAFIRSSFIGNKFAFVIFDEVHHLAAPGYRT
                     IAEQFISPYRLGLTATYEREDNLHLDFPRLVGGIVYQSSVNELAKDKHIASFIVEKRY
                     VKLLREEEIEYHKNYDQYLSYLQELGIRYGQIGLQKLIMISGKNQYARNALLARNKAL
                     DIALNSESKIEELRKILIENPQMKTIIFTQHNKLVYLISNKFLIPFITHKSSKQERED
                     ALNGFRDGRYRVLVTSKVLDEGVDVPDAELGIIVSGTGSKREFIQRLGRLLRTKPNNK
                     NAKLIEIIASGTSEINTSIRRKQGLKNI"
BASE COUNT          521 a          231 c          186 g          616 t
ORIGIN      
        1 tagtgtgttt ataattatac aaaatttcag cacagatcag tgcagaaata acagttttac
       61 ctagagaggt aggtagaaca attaatgaat ttttatcttt tgatgaatta aaaataatat
      121 tctgatacaa tcgagactca atagaattat ttttgataag tggatgtact atgaatctct
      181 gtatctcctg tatgttttct tcttttttat ttctaaagtc tgacatatgg caaatgtatt
      241 tattaaaaat aatatattat actaaataat ttaattcttt ttgttttatt ttataataat
      301 ttattatgga tttatataaa agatatttta atatttttat ataattataa aaaataacta
      361 ctaaaattat ctctatttct cgaaatataa aacaatattt actattagta atatatacta
      421 ggaacataag aataagtata ttcataattt ttaaagtgta taattatata ttttttaaac
      481 cctgctttcg tctaatactt gtgttaattt cacttgttcc tgacgctata atttcaataa
      541 gttttgcatt tttattattc ggttttgttc ttagtaaacg tccaagtctt tgaataaatt
      601 ctcttttgct tccagtccca ctaactatta tacctaattc agcatcagga acatcaactc
      661 cttcatctaa aacttttgaa gttactaaaa ctcgatatct gccatctcta aaaccattta
      721 atgcatcttc tctttcctgt ttactagact tatgagttat aaaaggaatt agaaatttat
      781 tggaaattaa ataaactaat ttattatgtt gtgtaaatat aatagttttc atctgtggat
      841 tttcaataag aattttacgc aattcttcaa ttttagattc gctatttaat gcaatatcta
      901 aagctttatt ccttgccagt aatgcatttc gagcgtactg attttttcct gatatcataa
      961 ttaatttttg caatccaatt tgaccatatc taattcctag ttcctgtaaa taagacaaat
     1021 attgatcata atttttgtga tattctattt cctcttcccg tagcaactta acatatcttt
     1081 tttctactat aaaagatgca atatgtttat ccttggctaa ttcattaaca gatgactgat
     1141 atactattcc tccaactaat ctaggaaaat ctaaatgcag attatcttca cgttcatatg
     1201 tagcagtcaa acctaatcta tagggagata taaattgttc tgcaatagtt ctgtatcctg
     1261 gtgcagccaa atgatgcact tcatcaaata tgacaaatgc aaatttgttt cctataaatg
     1321 aggagcgaat aaaagctgaa tcatatgtag atacagtgat acctgtgatg ttcgagatac
     1381 ctccaccaat atttccaatt tctatttttt gaaaatattt tgataaaatt cttgtccatt
     1441 gctccataag atccaaggtt ggaactacaa tcagcgtaga agaatttatt atttcgatta
     1501 attttattgc tattatagtc tttcctgaac ctgtaggtag gattatacaa cctt
//
LOCUS       DATCMF010000071         1670 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_538117, whole genome shotgun sequence.
ACCESSION   DATCMF010000071 DATCMF010000000
VERSION     DATCMF010000071.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1670)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1670)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1670
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_538117"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..324
                     /locus_tag="VIL14_00880"
     CDS             <1..324
                     /locus_tag="VIL14_00880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TCP-1/cpn60 chaperonin family protein"
                     /protein_id="HEY8522291.1"
                     /translation="MDPIDTMAELRAKQNKGMKWTGVNVRSTTVSDMFKQNILEPVVI
                     KEQIIKSATEAACMLLRIDDVIASSKSKAPPGGGMPGGMGGMGGMPGMGGMGGMGGMP
                     GMDMD"
     gene            complement(475..1593)
                     /locus_tag="VIL14_00885"
     CDS             complement(475..1593)
                     /locus_tag="VIL14_00885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522292.1"
                     /translation="MYYYNIHDIIKIKSQINLQELEYFSTKEFDDPDITLMIRSFSND
                     HDMSKFRATRKLMTNNFESGGAQYTIKYTEHFGSSGAQFQINFNGSKIEISINELISK
                     SKHVTYVNLIEPILRFLFLSKEYILLHSACMSPPNGQGFFLSAPPDTGKTTTVIKCVK
                     HGYYFLSDDMTIINLPNNALCFPKSMTISAHTYRTAVEAQSSSSHNGDNDTNDKKGMR
                     IRSLIHSKTGRSLMHKLADHNVPIFTINTIGQSRIKPPKYHISDIIKDAKIKAKTTIN
                     SLFFLEKGSDQEKVEKMESISVEDALKRAIENSDDAFLFPPYSDLIKYIRIENKTAYD
                     LLEAEKKMMEELLSSIDCYILKSSERKWSEMILNKFST"
BASE COUNT          532 a          243 c          284 g          611 t
ORIGIN      
        1 atggatccaa tcgatacaat ggcagagtta agagcaaaac aaaacaaagg aatgaaatgg
       61 actggtgtta atgtgaggag tacaactgtc tcagatatgt ttaaacaaaa catattagag
      121 cctgtggtaa ttaaagaaca aataatcaag tctgctactg aagcagcttg tatgctttta
      181 cgaattgatg atgttattgc atcaagtaaa tcaaaagctc ccccaggagg cggtatgccc
      241 ggtggaatgg gtggcatggg tggcatgccc ggaatgggtg gcatgggtgg catgggtggc
      301 atgcccggaa tggatatgga ttaaattttt cctttccatc tttttctttt taataataga
      361 tgcatatttc ggttaactat aatagtatga cagaaaaggt aatgatagtt tagtcaatat
      421 taaaataaaa tgcgttattt ttagtatttc taaaaaagat tagtgaattt gtaattatgt
      481 agagaattta ttgagtatca tttcagacca ttttctttca ctacttttta agatataaca
      541 atcaatacta gatagtaatt cttccatcat ttttttctcg gcctctaaaa gatcatatgc
      601 tgttttattc tcaattcgta tatattttat taaatcacta tagggtggaa atagaaatgc
      661 atcatcacta ttttctatcg ctctttttaa tgcatcctct acagagatac tttccatttt
      721 ttctactttt tcttggtcac tacctttttc caagaagaaa agagaattga ttgttgtctt
      781 agctttaatt ttcgcatctt ttataatgtc gctaatgtgg tatttaggag gttttatcct
      841 tgactgtcca attgtattaa tcgtaaagat tggtacatta tgatcggcca atttatgcat
      901 caaactcctt ccagtttttg agtgaatcaa acttctaatt ctcattcctt ttttatcatt
      961 tgtatcatta tcaccattat gagaagatga tgattgtgct tcaactgctg ttctataggt
     1021 atgtgcacta attgtcattg attttggaaa gcatagtgca ttatttggca gattgattat
     1081 agtcatatca tcagacaaaa aataatatcc atgtttaaca cattttatta cagttgttgt
     1141 cttgccagta tcaggaggcg ctgaaaggaa aaacccttga ccatttggag gggacataca
     1201 tgcagaatgt aaaagaatgt attctttaga aagaaagaga aatctgagaa taggctctat
     1261 taaattcaca tatgtaacat gtttggattt tgatattaat tcattaattg atatctctat
     1321 tttacttcca ttaaagttta tttggaattg agctcctgaa gaaccaaaat gttctgtata
     1381 tttgattgta tattgtgcac ctccagattc aaagttgttc gtcattaatt tcctcgtagc
     1441 tctaaattta gacatatcat gatcattgga aaaagatcgt atcattagcg tgatatcagg
     1501 atcatcaaac tcttttgtgg aaaagtattc taattcttgt aaatttatct gtgatttaat
     1561 cttaatgata tcatgaatgt tatagtaata caaatataca agattactat ctttaaaaga
     1621 gatttaaaca ctattccttt atcttatata agaatgttca attattatat
//
LOCUS       DATCMF010000072         2479 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_538146, whole genome shotgun sequence.
ACCESSION   DATCMF010000072 DATCMF010000000
VERSION     DATCMF010000072.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2479)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2479)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2479
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_538146"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..388)
                     /locus_tag="VIL14_00890"
     CDS             complement(<1..388)
                     /locus_tag="VIL14_00890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEY8522293.1"
                     /translation="MRKKTIISDGNGQTISKKIMMFDNITDIKILSNNIAWKIIELLS
                     SKAMYPAQVAKELKLYDQTVYYYIRKLAKIGAIEQVGTRLIRGGTARLYSTSSPSFGL
                     ELEGNGEKLESSNYTKDEKRKNIPHIL"
     gene            556..2322
                     /gene="glmS"
                     /locus_tag="VIL14_00895"
     CDS             556..2322
                     /gene="glmS"
                     /locus_tag="VIL14_00895"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004360 - glutamine-fructose-6-phosphate
                     transaminase (isomerizing) activity [Evidence IEA];
                     GO_process: GO:0006040 - amino sugar metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HEY8522294.1"
                     /translation="MCSIIGYLGKCMAAPVIIESLKKMEYRGYDSVGIATLERDRILL
                     RKDVGKVLDVDSSLQLNNMPGQIGIGHTRWATHGGITKLNAHPHTDCTNNVVVVHNGI
                     IDNYQPLKDTLIKQGHIFQSQTDSEVIAHLIETYLKKFDDVKKVIIETCKQLRGSYAF
                     VAIFKSGLIAGARLDEPLIIGIGNDGNFISSDVLGFLEYTDKAIFLDNHDIVILDHQG
                     VNLFDFNGNKVSRPITQVAWELGDIDKGKYAHYTIKEIHQQKNSIPMAFQIDQLSIQK
                     AADLISSSKNIFITGSGTSYHSALLAKYLFYKFAKIRTEIIMSSEFEYMSAPIDENSV
                     LIAISQSGETADVLNSVKIAKEYKAKILSIVNISTSSLSRLSDHYVSINCGPEMGVAA
                     TKSFTAQLATLYSIIDNLCLNKKSLDMSTNMFGNALNEILIDDSYLEKIADDIKSVQD
                     IYILGKSFHYPIALEGSLKIKELAYVHAEGIAAGEIKHGPLAMIELNTIVIVLNPEDE
                     TYDDTLHSIHEMKSRGAKIIGISNKSNDIYDYFIKLPFVNENLYPVIEIIPIQILAYY
                     LALKKNANPDYPRNLAKSVTVK"
BASE COUNT          856 a          367 c          375 g          881 t
ORIGIN      
        1 ttaatatatg aggaatattt tttctctttt catctttcgt gtaattagaa gattcaagtt
       61 tctctccgtt tccttcaagt tctaaaccaa atgagggact agaagttgag taaagcctag
      121 ctgtacctcc tctaatcaaa cgtgttccta cttgttctat tgctcctatt ttagctaatt
      181 ttctaatata ataataaact gtttgatcgt aaagctttaa ttcctttgct acttgtgctg
      241 gatacatagc tttggatgat aataactcta ttattttcca tgcaatatta ttcgataaaa
      301 ttttaatatc ggttatatta tcaaacatca taattttttt acttatagtc tgtccgtttc
      361 catccgagat tatagtcttt tttctcataa tatatcttgt ttatttccta taaaatgttt
      421 tataccggtc accaattacc atagtggctt gttacgtctt gatttaaact ttaggattat
      481 ggttataatg atttttatag tggtatagca gaaatatcaa tatactattt aaactaattc
      541 tatttgatat agtttatgtg ttctataata gggtatttgg gaaagtgtat ggctgcaccg
      601 gttataattg aaagtttaaa gaaaatggaa tatagaggat atgatagtgt tggaatcgct
      661 acccttgaaa gagacagaat tttacttcgt aaagacgtag gaaaagttct ggatgttgat
      721 agctctttac aattaaataa tatgcctgga caaataggaa taggacacac acgatgggct
      781 actcatggag gcataactaa attaaatgca catcctcata cagattgtac aaataatgtg
      841 gttgtagttc ataatggaat aattgataat tatcaaccac taaaggatac tctaataaaa
      901 caaggacata tttttcaaag tcaaactgat agtgaagtta ttgcacactt aatagaaacc
      961 tacctcaaaa agtttgatga tgtcaaaaag gttattattg aaacatgtaa gcaattacgt
     1021 ggttcttatg catttgttgc aattttcaaa tctggattga tagctggtgc tagattagat
     1081 gaaccattaa ttataggaat aggaaatgat gggaatttta tttccagcga tgtgttaggt
     1141 ttcttagaat ataccgataa agctatcttt cttgacaatc atgacatagt tattctagat
     1201 catcaaggtg taaacttatt cgattttaat ggtaacaagg tatccagacc tataactcaa
     1261 gtcgcttggg aattgggaga tattgataaa ggaaagtatg cacactatac aatcaaagaa
     1321 atacatcaac aaaaaaattc tatacctatg gctttccaga ttgatcaact atctattcaa
     1381 aaagccgcag atcttatttc ttcctctaaa aatattttta ttacaggaag tggtacaagc
     1441 tatcattcgg cattattagc aaaatatctt ttctataaat ttgcgaagat aagaacggaa
     1501 ataataatgt caagtgagtt tgaatatatg tctgcaccta ttgatgaaaa ttcagtgcta
     1561 attgctattt ctcaaagtgg tgaaacagca gatgttttaa attccgttaa gatagctaaa
     1621 gagtataaag caaaaattct ttccatcgta aatatatcta cctcttcttt atctcgatta
     1681 agcgatcatt atgtttccat aaattgtgga ccagaaatgg gcgttgctgc aacaaaaagc
     1741 tttaccgcac aattagcaac attatattct attatagaca atttatgtct aaataaaaaa
     1801 tcattagata tgtcaacaaa tatgtttggt aatgctctaa atgaaattct aatagatgat
     1861 tcatatttag aaaaaatagc tgatgacata aaatctgtcc aagacatcta tattctaggc
     1921 aaatcctttc attatcccat tgcattagag ggatctctaa aaattaaaga acttgcttat
     1981 gttcatgcag agggtatagc tgctggcgaa atcaaacatg gacctttagc aatgattgaa
     2041 ctaaatacaa tcgtcatagt tcttaatcca gaagatgaaa cttatgatga tacattacat
     2101 agtatacatg aaatgaaatc aagaggtgca aagattattg gaatttccaa taaaagtaat
     2161 gatatttatg actattttat caaattgcct ttcgttaatg agaatttgta ccccgtaatt
     2221 gaaattattc caatccaaat attagcctat tatctagcat taaaaaagaa tgctaatcct
     2281 gactatccta gaaacttagc taaatcagtg actgtaaaat aaatttaatt ttttatttag
     2341 tttattttct ataatcaaat atttattttg tttaatgtaa tttttcaata tttttctcat
     2401 attcattctc aataaatttc aacaaagttt ctccattaag ttttccattc gcatttatca
     2461 ttgttgctat tgatactcc
//
LOCUS       DATCMF010000073         4637 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_538973, whole genome shotgun sequence.
ACCESSION   DATCMF010000073 DATCMF010000000
VERSION     DATCMF010000073.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4637)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4637)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4637
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_538973"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            50..2857
                     /gene="ligD"
                     /locus_tag="VIL14_00900"
     CDS             50..2857
                     /gene="ligD"
                     /locus_tag="VIL14_00900"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR02776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006303 - double-strand break repair via
                     nonhomologous end joining [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA ligase D"
                     /protein_id="HEY8522295.1"
                     /translation="MLDEYNKKRDFDRTPEPPGNKKRLTVTKSSKFVVQKHDASRLHY
                     DFRLEDTKERVLKSWAVPKGISLNPKIKRLAVLTEDHPLDYLLFEGVIPQGSYGAGTV
                     IVWDTGTYTSEEEISDQFKKGKITFTLFGHKLKGKFTLVRTHLDRGKEGKQWLLIKLA
                     DDFESNEELTITRPNSVLTRRINKDLEKEEEDTPYNKKYKTTVSFNKANKINDNQLNY
                     PTTNTTIFSNQQQQVVEEFPTTIKPMLSTLVDEPFNSKDWAFEVKWDGVRSILFFNKL
                     KRTLELQSRNGRIITHRYPELVMALKSEPITSSNHSAINCNESAILDGEIVVLDNKTG
                     IPSFQNHQRRMNIDSSREIEILSRELPATYYFFDILYLDGRNLQDLPFLERRKILSDV
                     IRENTMIKKSDFIEEVGKEIFDTTKRMGLEGLIAKHKSSKYVQGIRSREWLKIKHIKT
                     QDCIVIGYTRGEGNRENYFGSLLLAVNDSKGKLQFVGHTGSGFDFLLLKQLYDKLQKI
                     RIEKCPVDYVPYTNRDPFWTQAELVVEIKFSNWTSEKIMRSPIFLRVREDKTPNECLL
                     EREKYTEKLIKTVEVKNNEGEKNTIYYNIEDNNNNNGVSSFSNLDKVFWDKTINHPQL
                     TKKDLIEYYDKISKFILPYLKDRPLSLSRYPDGIKGKSFYHKNWNQNNKPPFVQTVEV
                     YSESREDKIINYIISNNKETILWLANLGCIEMHPWYSRINNFDSCKERDDILDKEKCG
                     LNFPDFIVFDLDPYIYSGQEKNKGQNEPEYTIKAFKATIDVAFDLKELFDDLKIESYI
                     KTSGKTGLHIFVPIANLYTYEQTRSFAEVIGKILIKRHPSKITMEWDTTKRTGKVFFD
                     HNQNARGKTIASIFSPRPTNSASVSFPIKWDDLLQVVPTDFTIFNVPHILNKKIKNPW
                     NNILEKKQNLNKILESIEEIL"
     gene            3277..3681
                     /locus_tag="VIL14_00905"
     CDS             3277..3681
                     /locus_tag="VIL14_00905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522296.1"
                     /translation="MSNDIEILSDFTENVLNSEKYIRWVGITDQNGIIINEKHREGLK
                     LFLTKEENQESAINTIIRQKTRTKFEPKIGKLTYAFGRYENFSRFIIPISENYYLILT
                     IEFKEKHFDKIITEKILPLIKEMKEKVSRIKK"
     gene            4024..>4637
                     /locus_tag="VIL14_00910"
     CDS             4024..>4637
                     /locus_tag="VIL14_00910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522297.1"
                     /translation="MDIKKNSYSIISISITMTLILGVIYSNDKDFSALSQQLPTDQTE
                     LQDLISKSLDYVHQGDTSMTSTNILLNGINLTQGEFILLYDSTPFASKGHIAVNLPCD
                     PKNPLDPIFDILVGRAPDLFVMPLGYLEPLSKPGKMCVYHGQFGFGDPVTDLLLQYVG
                     DDPIKLEGPHSIVISIHESYKPTGDSFEERQHHVTNVTNVTNVT"
BASE COUNT         1862 a          651 c          693 g         1431 t
ORIGIN      
        1 ttaatgttgc cttctctttt cttctattat tgtaaattag tgacataaaa tgttagatga
       61 atataataaa aaaagagact ttgatagaac acctgaacct ccaggaaaca aaaaacggct
      121 cacagtcact aaaagtagca aatttgtagt acaaaaacac gatgctagca gattgcatta
      181 tgactttaga ctagaagata caaaagaaag agtattaaaa tcttgggcag taccaaaagg
      241 aatctcactt aatccaaaaa taaaaagact tgcagttctg acagaagacc atcctttaga
      301 ttatttgctc tttgagggtg taattcccca gggaagttac ggtgcaggta ctgtaattgt
      361 ttgggataca ggtacataca catcagagga ggaaatatca gatcaattta aaaaaggaaa
      421 gattactttt actttatttg gtcataaact aaagggaaag tttaccttag ttaggactca
      481 tttagataga ggaaaagaag gaaagcaatg gctcttgatt aaattagctg acgatttcga
      541 atctaatgaa gaactaacta taactagacc aaattctgtt ttaactagaa gaataaataa
      601 ggatttagaa aaagaagaag aagatacacc ttacaataaa aaatataaga caacagtctc
      661 ttttaataaa gcaaataaaa taaatgataa tcagctaaat tatcctacta ctaatactac
      721 tattttttct aaccaacaac aacaagtagt agaagaattt ccaaccacaa taaaaccaat
      781 gctatcaaca ttggtagatg agccctttaa cagcaaagac tgggcctttg aagtcaaatg
      841 ggatggagta cgttctatac tattctttaa taagttaaag agaacactag aattgcaatc
      901 tagaaatggc agaattatca ctcacagata tccagagcta gtaatggcat taaagtcaga
      961 gccaataaca tcatcaaatc attcagctat aaactgtaat gaatcggcaa ttttggatgg
     1021 tgagattgtt gtcttagaca acaaaacagg aataccaagt tttcagaatc atcaaagaag
     1081 aatgaatatt gattccagta gagaaatcga aatcttatct agagaactac cagcaaccta
     1141 ttactttttt gatattcttt atttagatgg aagaaatttg caagatttgc catttttaga
     1201 gagacgaaaa attctttcag atgttattag agaaaataca atgataaaaa aatccgattt
     1261 tattgaagaa gtaggtaagg aaattttcga tacaactaaa cgtatgggat tagaaggatt
     1321 aatagccaaa cataaatcaa gtaaatatgt acaagggata cggtctagag aatggttaaa
     1381 aataaaacat attaaaactc aagactgtat agttataggt tatactagag gcgaaggaaa
     1441 tagggaaaat tactttggct cacttcttct tgctgttaat gattccaaag gtaagttaca
     1501 atttgttggt cacactggaa gtggatttga ttttttgctc cttaaacagc tatatgataa
     1561 acttcaaaaa attaggattg aaaaatgccc cgttgattat gtaccgtata ctaaccgaga
     1621 ccctttctgg acacaagccg aacttgtagt agaaataaaa tttagtaatt ggactagtga
     1681 aaagattatg aggtctccta tttttctcag agtaagagaa gacaagacgc caaacgaatg
     1741 tcttttggaa agggaaaaat acactgaaaa actaataaaa acagtagaag taaaaaacaa
     1801 tgaaggagaa aaaaacacta tttactataa catagaggat aataacaata ataatggtgt
     1861 ttcttccttc tctaatctcg acaaagtatt ctgggacaaa acaataaacc atccacaact
     1921 tacaaaaaaa gatttaattg aatattatga taaaataagt aaatttatcc tcccttatct
     1981 caaagataga ccactatcgt taagtcgata tcctgatgga attaaaggaa aatcatttta
     2041 tcacaaaaat tggaatcaaa acaataaacc accatttgta cagacagtag aagtttattc
     2101 tgaatcaaga gaagacaaaa ttatcaatta tattatatct aataacaaag aaactattct
     2161 atggcttgca aatctcggtt gtatagagat gcatccatgg tatagtagga ttaataattt
     2221 tgactcctgc aaagaaagag atgatatatt agataaggaa aaatgtggtt tgaatttccc
     2281 tgattttata gtttttgact tagacccata catatattca gggcaagaaa aaaataaagg
     2341 tcaaaatgaa ccagaataca ctatcaaagc atttaaagca acaattgacg tagcttttga
     2401 cctaaaagaa ttatttgacg atctaaagat agaatcatat ataaagacat ccggtaaaac
     2461 aggattacat attttcgttc ctattgctaa tttgtatact tatgaacaaa ctagatcgtt
     2521 cgcagaagtt ataggtaaaa ttcttatcaa aagacatcca agtaaaatta ctatggagtg
     2581 ggataccaca aaaagaacag gcaaagtatt ctttgatcat aatcaaaatg ctagaggcaa
     2641 gacaatagca tcaatatttt cgccaagacc tactaattct gctagtgtat catttcctat
     2701 taaatgggat gatctattac aggtagttcc aacagacttt acaattttca atgttcccca
     2761 tatactcaat aaaaaaataa aaaatccatg gaataatatc ctggaaaaaa aacaaaactt
     2821 aaataaaatt ctggaaagta ttgaagaaat actttgagag aaagaatgat gactggtaaa
     2881 aatgtaattt taaatcttca tatgctttta ctttatttta taaaaatata atttattcta
     2941 ctactgtcat atttttttca aacaaaatta aataattaaa ctctaattta gcagtaaagg
     3001 tatttatttt aaaaattttt aaattgaaac tataggtttc taattattaa tctaattatc
     3061 aatctaatta ttaatctaat tatcaattct gctatcattt tatgattcaa tcattgtaat
     3121 agacaacatt taacagtttt atagtgctca catatttgaa taaaattctt aaaacattct
     3181 tgggatatat tatatttgta aaatccagtt atttaataat gggtataata ataaagtcat
     3241 aggaaatttt ttattagata ttactttttg ataaatatgt caaatgatat tgaaattctt
     3301 tctgatttca ccgaaaatgt attaaattct gaaaagtaca tacgatgggt cggtattact
     3361 gatcaaaatg gtattattat aaatgaaaaa catcgtgaag ggttaaaatt atttcttact
     3421 aaagaagaga accaggaatc tgcaataaat acaataatta gacaaaaaac aaggactaaa
     3481 tttgaaccaa aaataggaaa attaacctat gcatttggaa gatatgaaaa ctttagtaga
     3541 tttataattc caattagtga aaactattat ctaattttaa caatagaatt taaggaaaaa
     3601 catttcgata aaataataac cgaaaaaatt cttcctttaa taaaagaaat gaaggagaaa
     3661 gttagtagga taaaaaaata aatactaata cttatgtagg ggataaacag taacaattgc
     3721 aagtatagcg ttaggggatc tacataatta atgctttaat agttgaaacc aatacagaga
     3781 aattagatat aaaactagca atagagatga aatagtaaat atatcaatag atcaaatttt
     3841 ttatttatag aaaagtgtta ctgatggtaa aaatatagta tcttcattat tattggaagt
     3901 cttaaaccag ccttaatttt attaagtcta tagaagttaa gttctttaac aactaacctt
     3961 taattaacat aatcatatta tattaaaaat aagattaaat atgatagtac ttttatctaa
     4021 ataatggata taaaaaagaa ttcctattca ataatttcaa tttcaattac tatgacatta
     4081 atattaggag taatatattc aaatgataaa gatttttcag cactttctca acaattgcct
     4141 actgatcaaa cagaactaca ggatttaata tcaaaaagtc tagattatgt tcatcaaggt
     4201 gatacaagta tgacatctac aaatattttg cttaatggaa taaatttgac ccaaggcgaa
     4261 ttcattttac tctatgattc cacaccattt gcctctaaag gccatatagc tgttaattta
     4321 ccatgtgatc ccaaaaatcc gctcgatcca attttcgaca tacttgtcgg acgcgctcct
     4381 gacttgtttg ttatgcctct tggttattta gaaccactat caaaacctgg taagatgtgt
     4441 gtctatcatg gacaatttgg atttggcgat cctgtaactg acttactttt acaatacgtt
     4501 ggagatgatc caataaaact agaaggtcct cactctatag taatctcaat tcatgaatcc
     4561 tataaaccaa ctggtgattc atttgaagaa cgccagcatc atgtaactaa tgtaactaat
     4621 gtaactaatg taactaa
//
LOCUS       DATCMF010000074         2712 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_75919, whole genome shotgun sequence.
ACCESSION   DATCMF010000074 DATCMF010000000
VERSION     DATCMF010000074.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2712)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2712)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2712
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_75919"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..221
                     /locus_tag="VIL14_00915"
     CDS             <1..221
                     /locus_tag="VIL14_00915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522298.1"
                     /translation="LMVSWGLLKGKRWARTITLIISIIAIIIAIISLVSSRDLIHIIS
                     VIIYGIIIYYMFTNKVKLFFGKVKEPTP"
     gene            complement(824..2194)
                     /locus_tag="VIL14_00920"
     CDS             complement(824..2194)
                     /locus_tag="VIL14_00920"
                     /inference="COORDINATES: protein motif:HMM:NF012296.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HEY8522299.1"
                     /translation="MDDAIEYPPGPKSLFPYALARKFLRDPLKTLTTISQTYGEISHF
                     KFGKQDVYFLNHPNYIEDVLIINYKNFIKSRGLQISKRLLGSGLLTSEGDYHDNQRRI
                     IQPTFYPKKIQSYAEVMIKKTLNLCDTWKEGSVIDIHKEMTRLTLEIISKTVLGYDIK
                     PEDDEIKDSLLICMKYFNRLLMPFGELIEKIPILPINKGFQKAKRNLDSIVFRMINEH
                     RMKLEKKAEKDTDLLFTLLQAQDDNTKMGKMTDQQLRDEVMTIFLAGHETTANALTWT
                     FYLLSTHPAIDARLQKEIYPIFSNKTDISFDDDIQQQLEYTTKVLTESMRLYPPAWAL
                     GRQAINDCKIGKYIIPSGSIILMSQYVMHRNPLYFPEPNTFYPDRWTNEFKKNLPRFC
                     YFPFGGGIRSCVGEPFAWMEAILITAIINRLWKINSIPSNKVVLKPLITLRPKYGMHM
                     KITRRY"
BASE COUNT          895 a          406 c          366 g         1045 t
ORIGIN      
        1 gtttaatggt ttcatggggt cttttaaagg gaaaaagatg ggcaagaaca attacactaa
       61 taatcagcat aatcgcaata ataattgcta ttatttctct tgtaagtagt agagatttaa
      121 tacatattat ttcagtgata atttatggta taataatcta ctatatgttt acaaacaaag
      181 taaaattatt ttttggtaag gttaaagagc caactcccta atttattttt caaattttta
      241 gaatataatt atttcaagtt taatctatgc atttccttct ttacaagtgc ccatattaaa
      301 attggaaaaa ttatgcccac tatcagtatt acttccattg ttaaaaaaat gaaaaaacct
      361 aatactataa cccatacaat acatgtcgtc tctatccaat cataggtgtt gatcaagata
      421 ttataataat aataaagttc actatctatt taagttgaat attttattta tatataatca
      481 ttacaatatt aaaaagtaat acgaatagga atatgaaaat ttacaaaaag attattatag
      541 atttatgttg acaaaacatt gagttctttc taaaatttta tagaattata taagcatata
      601 aagctaccaa aatcttcaat ttataatggt aagaatttag gtctttctcg ttcattcata
      661 ctcctaaaaa gaggtttttg aatatggatt ggtaaacatc atcatctctc ttagttccct
      721 acacatcaat aatacctctt tttaagttat ctatatcatt tacatatagt aactctccta
      781 gatgataagt tacaaatatt attatcttaa aagattcttt cagtcagtat cttcttgtta
      841 ttttcatatg cattccatat tttggacgca aggttatcaa gggtttcaaa acaaccttat
      901 ttgatggtat actatttatc ttccaaagtc tgtttataat agctgtaatg agaattgctt
      961 ccatccatgc gaatggttct ccaacacaac ttctaattcc accaccaaaa ggaaaatagc
     1021 aaaatcttgg taggtttttc ttaaattcat tagtccaacg atcgggataa aaagtatttg
     1081 gctctggaaa ataaagtgga ttacggtgca ttacatattg actcattaag attattgatc
     1141 cagaaggaat aatatatttt ccaattttgc aatcattaat tgcttgacgt cctaaagccc
     1201 atgcaggtgg ataaagtctc atcgactctg tcaatacttt tgtagtatat tccagttgct
     1261 gctgaatatc atcatcaaat gatatatctg ttttgttact aaaaatagga taaatctcct
     1321 tttgaagtct tgcatcaatt gcaggatgag ttgataacaa ataaaatgtc caagtaagtg
     1381 catttgcggt tgtttcatgg cctgccaaaa atattgtcat tacttcatct cttaattgtt
     1441 ggtcagtcat ttttcccatc tttgtattat cgtcttgtgc ctgcaaaaga gtgaataata
     1501 aatcagtatc tttttctgct tttttctcta atttcattct atgttcgttg atcattctaa
     1561 atactattga atcgagattt ctttttgctt tttgaaagcc cttatttatt ggtaaaattg
     1621 gtattttttc aattagttca ccaaacggca tcaaaaggcg gttgaaatat ttcatacata
     1681 ttagaagtga atctttaatt tcatcatctt ctggtttaat atcataacct aatacggttt
     1741 tactaataat ttccaaggta agacgtgtca tctctttatg tatatctatt actgatccct
     1801 ccttccaggt atcacataga tttagagttt tttttatcat cacttcagca tatgattgga
     1861 tttttttggg ataaaatgtt ggttgtatta tacgtcgttg attatcatga taatctcctt
     1921 cactagtaag taagccagac cccaaaagac gttttgatat ttgtaaccct ctacttttga
     1981 taaaattctt gtagttaatt attagtacat cttctatata attaggatga ttcaagaaat
     2041 agacatcctg tttaccaaat ttaaagtgag atatctcacc ataagtttga gatatggtag
     2101 ttaatgtttt aagaggatct cgtaaaaatt ttctagcaag agcataagga aataaagatt
     2161 ttggtcctgg aggatattca atagcatcat ccattcaata ttctttctct tttgcattct
     2221 tatattggtt tagctttaat caaaaactaa aataggcaat tggtgccaga tttcttcctg
     2281 ttgctttaga gataattgca tcgctcaagt ttttttagtc tgattcacta tctgataata
     2341 atctcaaaag gaaaagattg ttcgtagtta gatttaattg acgttcaaat gattcgtcaa
     2401 aatatacatc tccattattt aataaaaata taattgatga aaattcatga aattgatcca
     2461 agagtatttt agctattttt ctcttttcta tatccgcatc ttctggtata ccattaattt
     2521 ttggaaatct atttaactca aatttttttc taaattaaaa taataatagt agtaaatttt
     2581 ttttcattgc gtagtaggaa ttcgctttta tcaaactatt tattctatcc tgttgataat
     2641 tttttatgaa gcccttttct atacttaaaa acatagaggg atattcaaga attactaaat
     2701 tttctctctg tt
//
LOCUS       DATCMF010000075         1609 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_340956, whole genome shotgun sequence.
ACCESSION   DATCMF010000075 DATCMF010000000
VERSION     DATCMF010000075.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1609)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1609)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1609
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_340956"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            192..455
                     /locus_tag="VIL14_00925"
     CDS             192..455
                     /locus_tag="VIL14_00925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522300.1"
                     /translation="MEEKKIKVNNREYNVTLNDQTQLNAMKLKRLYQQSYSDMDSFDE
                     VSTEISTTINNLLKRSVSPEIREEDMDGAIQQILKMYEKKGKK"
     gene            617..>1609
                     /gene="thrC"
                     /locus_tag="VIL14_00930"
     CDS             617..>1609
                     /gene="thrC"
                     /locus_tag="VIL14_00930"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004795 - threonine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HEY8522301.1"
                     /translation="MNLALKKCINPTCGLTYEIQNHNYQCSCGSFLDVLYSERPDKEL
                     VEIFYQRRNPNRNIYNESGVWRFRELLNFPEIDTDNISECSDVLVSLDGAEGRLSKPY
                     NMSKVADFVDLPHENLFLQPEGYNPSGSFKDNGMSSAVTHAKMLKIKTLICASTGNTS
                     ASAAMYASNENMECDVFIPKGEIAPGKLGQAFQFGAQVIQVDGNFDDALQSSLEYSKT
                     SHGYTVNSINPFRIEGQKTIIYRALEHLEWNPPDWIIYPGGALGNISSCGKALIELYE
                     WGWIQKIPRIAVVNAEGANTLYELVNGKFENSKLHWNEGKPDINLIQRYYQYKKD"
BASE COUNT          616 a          231 c          275 g          487 t
ORIGIN      
        1 gggtgaaaat taacaataga aaaagaaaaa atatttctat tattatgaat ctacaatttt
       61 tataaagtct tgcaaaccga tgtatcgtgt ttccaaataa ttattgtcta gtatagcaaa
      121 ttattactta tagactaaag aataaaaatt ttacaaaagt tttttaaatc cttcagatag
      181 ggtatgatct tatggaagaa aaaaagataa aagtaaataa tagagaatat aatgttaccc
      241 ttaatgatca aactcaacta aatgctatga aacttaaacg gttatatcag caaagctata
      301 gtgatatgga cagttttgac gaggtcagta ctgaaatatc aaccaccatt aataacctct
      361 taaaaaggtc tgtctctccg gagattcgtg aggaggatat ggatggagcg attcaacaaa
      421 tcctcaaaat gtatgagaaa aaaggaaaga aatagcattc catttaaaag gatcaaacaa
      481 atcctttagg attccaccga gtagttataa ctttatcatt ttaaataact atacaattaa
      541 caataattga aaaataagat taagtaaaaa acacacacca ataatataaa taagataata
      601 ttaatgattc attcgaatga atcttgctct aaaaaagtgt ataaatccta cttgtggttt
      661 gacttatgaa atacaaaatc ataattatca gtgttcttgt ggttcatttc tggatgttct
      721 gtattcagaa agacctgata aggaattagt cgagatattt taccaaagaa gaaatcctaa
      781 ccgaaatatc tataatgaaa gtggggtatg gaggtttaga gaattattaa attttcctga
      841 aatagatact gataatatca gtgaatgttc agatgttctt gtttccctcg atggtgcaga
      901 aggtagatta tctaaaccat ataatatgtc aaaagttgca gactttgtag atcttccaca
      961 tgaaaatctt tttctgcaac ccgaaggata caatcccagt gggtctttca aagacaatgg
     1021 tatgtcgtct gccgtaactc atgcaaagat gctcaaaata aagacactga tttgcgcatc
     1081 tactggaaat acatcagcat cagcagccat gtatgcttcc aatgaaaaca tggaatgtga
     1141 tgtttttatt ccaaaaggag aaatagctcc aggtaaatta ggacaagcct ttcaatttgg
     1201 ggctcaagtt attcaagtag atggaaattt tgatgatgca ctacaatctt ctttagaata
     1261 ttcaaaaact tcacatggtt atactgtaaa ctctattaat ccatttagaa tagaagggca
     1321 aaaaactatt atttaccgag cactagagca tttagaatgg aaccctcctg attggatcat
     1381 ttatccgggt ggtgcattag gaaatatatc cagctgtggc aaagcattga tagaattata
     1441 tgaatgggga tggattcaaa aaatccctag aattgcagtt gtaaatgcag aaggtgcaaa
     1501 tactctttat gagcttgtta atggaaagtt tgaaaattca aaactacact ggaatgaagg
     1561 taaaccagat attaatctaa ttcaaagata ttatcaatat aaaaaggat
//
LOCUS       DATCMF010000076         2121 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_15252, whole genome shotgun sequence.
ACCESSION   DATCMF010000076 DATCMF010000000
VERSION     DATCMF010000076.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2121)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2121)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2121
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15252"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..311
                     /locus_tag="VIL14_00935"
     CDS             <1..311
                     /locus_tag="VIL14_00935"
                     /inference="COORDINATES: protein motif:HMM:NF013077.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HEY8522302.1"
                     /translation="FHDLGAANENMFIEAFKQGLIMHEMGGFDVRKAREVFNIAEDYE
                     IGSMIAIGYQDTHTVIPDRLDEKELIPRVRKPLSEIAFIEELDNPHGISVCSAYSRIL
                     "
     gene            339..902
                     /locus_tag="VIL14_00940"
     CDS             339..902
                     /locus_tag="VIL14_00940"
                     /inference="COORDINATES: protein motif:HMM:NF014678.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF192 domain-containing protein"
                     /protein_id="HEY8522303.1"
                     /translation="MGRTIIFAFVSAPAFIIAAVIGIVWMLPILNSHVFTASSARAEG
                     SNNNTNFLKEIENAPKDRYLQSKVSIDGFNMTADLALTSEQREKGLSVKDKLKENEAM
                     LFVFEESAKHSFWMKDMKFPIDIIWLDSDGEVVHVEKRLEPCISVFTCTSYSPSRDSQ
                     FVLETVAGFTQRHNVSVGTDIDFELVD"
     gene            complement(921..1073)
                     /locus_tag="VIL14_00945"
     CDS             complement(921..1073)
                     /locus_tag="VIL14_00945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522304.1"
                     /translation="MTCEALLIGGIAGLALTAGALAFQSLTSDKKISEKAKVKEERLA
                     AMTTNL"
     gene            complement(1242..1472)
                     /locus_tag="VIL14_00950"
     CDS             complement(1242..1472)
                     /locus_tag="VIL14_00950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522305.1"
                     /translation="MVGIDFTGLKKLCKGKRATSTGLTEEGEEKFPKENYQTIFLIYF
                     QLIGIHGTTMSTYVVLCILNLLEIHQKWLNAG"
     gene            1780..2094
                     /locus_tag="VIL14_00955"
     CDS             1780..2094
                     /locus_tag="VIL14_00955"
                     /EC_number="4.2.1.96"
                     /inference="COORDINATES: protein motif:HMM:NF013494.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008124 -
                     4-alpha-hydroxytetrahydrobiopterin dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006729 - tetrahydrobiopterin biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4a-hydroxytetrahydrobiopterin dehydratase"
                     /protein_id="HEY8522306.1"
                     /translation="MFSDNDVEKSFVEELKNISWELKDEKLVKLFRFPSFIRAIDFVN
                     EIAIIAERLDHHPIITINWKTVKLSLKSFDVDAITKRDISLAKEIENLNEQLKNTDNG
                     KI"
BASE COUNT          708 a          349 c          379 g          685 t
ORIGIN      
        1 attttcatga tttaggagca gcaaatgaga acatgtttat tgaagcattt aaacaaggat
       61 tgattatgca tgaaatgggt ggctttgatg tacgaaaggc tagagaagtt ttcaatatag
      121 ctgaagatta tgaaataggt agtatgattg cgataggtta tcaagacaca cataccgtga
      181 tacctgatag attagatgaa aaagagctta taccaagagt aagaaaacca ttatcagaaa
      241 tagcatttat tgaagagttg gataatcctc atggaatttc agtttgttca gcttattcac
      301 gtatactata aattgtaatc ctaataaaga caaatgttgt gggtagaaca ataatatttg
      361 ccttcgtaag tgcgccagct tttattattg ctgctgttat aggaattgtt tggatgcttc
      421 ctattctcaa cagtcatgta tttactgcat cgtcagcaag agcagaaggg tccaataata
      481 atacaaattt tctcaaagag atagaaaatg caccaaagga cagatatcta caatcgaagg
      541 tttctattga tggatttaac atgactgcag atttggcatt gacaagcgaa caaagggaaa
      601 aaggcctatc cgttaaggat aaattaaaag aaaatgaagc aatgctattt gtttttgagg
      661 aatctgctaa acattcattt tggatgaagg atatgaaatt tccaattgat atcatatggt
      721 tggacagtga tggcgaggta gttcatgtag aaaagaggct tgagccctgt atctcagttt
      781 ttacctgtac cagctatagt ccaagcagag actcacaatt tgtgttggag actgtcgcag
      841 gatttactca aagacataat gtcagcgtgg gaactgatat tgattttgaa ttagtggact
      901 aatctttcaa atctctgctg ttaaagatta gtagtcatgg cagctagtct ctcttctttt
      961 acctttgctt tttcacttat ctttttatcg ctagttaagg attgaaaagc caaagcccct
     1021 gctgtcaaag ccaatcctgc aattcctcct ataagtaatg cttcacaggt catactgtta
     1081 attcataggt atctgtggtg gaataatatt ttaatttatc caaatcttat gacgtctatt
     1141 gggataaaaa tatcttgtgg ggggtgcaaa catacctgat acaaactgct ctacttttat
     1201 ttttacttta tattgtcctg accaaaattt tgagaatgag tctaaccagc attcagccat
     1261 ttttgatgta tttctaataa attcagtata catagtacta catacgttga catagttgta
     1321 ccatgaatcc ctataagttg aaaatagatc agaaaaatag tttgataatt ttctttcgga
     1381 aatttttctt ctccctcttc cgttaagcct gtacttgtgg ccctctttcc tttgcataat
     1441 tttttaagtc ctgtaaaatc gattccaacc accggttaat ttccaacaac ccatgcatta
     1501 tgaccaggtg gaactacagc agtgtctcca ggaccaattt cttctcacta ccctcatcca
     1561 ttacaacctt aaccagtcca gatatcatgt attgtgtatg ctgctccatt aatcataata
     1621 ttatttctcc attcatattg agatgctgaa gaaatgacaa gaacgatggg aaaaccaaaa
     1681 ttattacttg aaaaatattg cggataaagt taaaacattg tttgacaatc tatgccactg
     1741 aaaaggttta actgttaact atcagaaata gtatatcaaa tgttctcaga taatgacgtt
     1801 gagaaaagtt ttgtagagga gttaaagaac atctcatggg agctaaagga tgaaaaatta
     1861 gttaaattat ttcgattccc aagttttatt agagccattg attttgtaaa cgaaatcgca
     1921 attatagctg agagacttga tcaccatcca atcattacaa ttaattggaa aactgttaaa
     1981 ctctccttaa agtcatttga tgttgatgca ataaccaaaa gagatatttc tcttgcaaag
     2041 gaaatagaga acttaaacga acaactaaag aacacagata acggcaaaat ttaaacggat
     2101 ttcttatacc tgattttatt g
//
LOCUS       DATCMF010000077         3035 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_76161, whole genome shotgun sequence.
ACCESSION   DATCMF010000077 DATCMF010000000
VERSION     DATCMF010000077.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3035)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3035)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3035
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_76161"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(711..968)
                     /locus_tag="VIL14_00960"
     CDS             complement(711..968)
                     /locus_tag="VIL14_00960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522307.1"
                     /translation="MTDTPIIYNAEDVLKKEARGLGNADLGEVQEVNPEYIVTQKGTL
                     VVDKFYLPKSLVERFDDNTVWFKITEEEANTYKKHATKPLG"
     gene            1439..2449
                     /locus_tag="VIL14_00965"
     CDS             1439..2449
                     /locus_tag="VIL14_00965"
                     /inference="COORDINATES: protein motif:HMM:NF025774.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MEDS domain-containing protein"
                     /protein_id="HEY8522308.1"
                     /translation="MRYFDNNNTNHLSNEHIMLLYEDRNKCNNFIIDIINEGLKNGCL
                     CIYASVDIDNSKSISVIDSLYSRIINYEANIQNENLKFINSKPYYESALKGDLTVFEK
                     WKSELEYILYKRLSEGKKDKILIVGDVTCTLYENKNFRECIDLEKWWQEVQSDWKINN
                     KDITVVCPHPNYVVKEESAQNTKNKIGNSHNATIDIENAYSFQYFYNLIAKNSNFDDL
                     VNYQQTIKKTMKEIKSNFMEEQNNIINTYHSIYSKQLDEIIDDSFNNPKTMEEYSNTC
                     NEINRNLMNYQNNPTRIINNIMDKNMDTFLKSIEIAQKFYRDVVQSYCNYIMMFKKLP
                     EK"
BASE COUNT         1116 a          391 c          402 g         1126 t
ORIGIN      
        1 atttaatatg tttattgtct aatcgtttta ttcaatatta tgctgaaaaa tgtttctcca
       61 agtaaatcgt gtattattct taatacctaa agcataataa attaattaaa tacttatcta
      121 cttgttaatt tattttgtta gaagttaaaa gccataggag ccacctacct actaaggagc
      181 aagtaataat aagagagagg ctataacaat attgattgct tgattgatta agcaggagca
      241 acaccaacaa tattataaac cattgtgtag taatgtacat attgaatgaa gatggcgaaa
      301 gcaaaaaaaa gaaatcattc atctccgaaa ttaaaaccgg taatataata aaatcaaaga
      361 tattttctta tggtttttca ttgctttcaa ttggttttct tatatttata ttaacaaatg
      421 tagtcaatca ctatctgaca aaatatatac actttcattt taatatgatt aaataaatta
      481 acaacaatta tttttgctta tttattttaa aagccataac caacttatta ttagtgagga
      541 atattatcaa taacaataga aggcccataa aattgttgga gtttttttcc tgatcctctg
      601 cttctgctta taaaattaat taggtgtttt cgaaagtagt agtctgattg tattaaattt
      661 tctattattt ctatttgtaa tttatcaatt tttaaaatag tttattcaaa ttagcctaat
      721 ggtttagtcg catgtttttt gtatgtattt gcctcttctt ctgttatctt aaaccagaca
      781 gtattatcat caaagcgctc tactaaactc tttggaagat aaaatttgtc gacaactaaa
      841 gtacctttct gagtcacaat atattcagga ttgacttctt gaacttctcc taagtcagca
      901 ttacctagtc ctcttgcttc tttttttaat acatcttctg cattatatat aattggagta
      961 tctgtcataa ctacaatagt aaaccacttt atttatgaat ttataaaatc tataagatgg
     1021 atatatttta gataaaacca ttatacttta gcacctactt gtaaaaatcc ctagcctctt
     1081 gaattagtga attatagata aatttggaga ccctagaaaa ctactgaccc tgcgggagta
     1141 ataccgatag cgcttctaaa ataggagtct gttattgtag ataactacta acttgtattt
     1201 agcttttatt atcagaaact tatcaattat tcaaagtaaa ataattttat aataataaac
     1261 taattggttc ggtggaatga tattgaaatt tcaatacaat tagattttta ttaattgtat
     1321 tgggataact agagaactat acgcgcttag aataaatact tgaaaatata gtttagctta
     1381 taatactatt aatagttttt atatatacta atagatatta gatatattag aacgtgtaat
     1441 gcgatatttt gataataata atactaatca tttatccaat gaacacatca tgttattata
     1501 cgaagatagg aataagtgta ataattttat tatagatatt attaatgaag gcttaaaaaa
     1561 tggctgttta tgtatttatg catctgtaga catagacaat tctaaaagta tatcggtgat
     1621 agatagttta tattccagaa taataaatta tgaagcaaat atccaaaatg agaatctaaa
     1681 atttatcaat tctaaacctt attatgaatc tgcgctcaaa ggagatttga cagtatttga
     1741 aaagtggaaa tcagagttag aatatatatt gtataagcgt ctttctgaag gaaaaaaaga
     1801 taaaatacta atcgttggtg atgtaacttg tactttatat gaaaataaaa attttagaga
     1861 atgtatagat ttagaaaaat ggtggcaaga agttcagtca gactggaaaa taaataacaa
     1921 agatattact gtagtatgtc ctcatcctaa ctatgtcgtt aaggaagaat cagcacaaaa
     1981 tacaaagaac aaaattggca attctcataa tgctacaatc gatatagaaa atgcatactc
     2041 gtttcaatac ttctataatt taattgctaa aaatagcaat tttgatgatt tagttaatta
     2101 tcaacaaaca atcaagaaga ctatgaaaga aataaagtcc aatttcatgg aagaacaaaa
     2161 taatatcatc aatacatatc attcaatata ttctaaacaa ttagatgaaa taattgatga
     2221 tagttttaat aatccaaaga ctatggaaga atattctaac acctgtaatg aaataaaccg
     2281 aaatctaatg aattatcaaa ataatcctac tagaataata aataatatta tggataaaaa
     2341 tatggacaca tttcttaaat caatagaaat agcacaaaaa ttttatcgtg atgttgtcca
     2401 aagttattgt aattatataa tgatgtttaa aaagttaccg gagaaataat cttattatct
     2461 cattgtaggc gtagtacaaa tattagcttt caaatctata atagtgcaat taaaacttcc
     2521 attattctcg tttcatgctt aatcggagga aggatatgga aatttcaata caatctcatt
     2581 aatattttaa ttagatatca ttaatttact tttttcgtca ggtaaaagtg attcaatcag
     2641 taaataagaa gaataaagga atatgagaga aagaacagta cgtctacata actatatttt
     2701 tgttatgtta aagtataata agtgtgtact atttttctgt taatctttct tttttgccat
     2761 taggatattc tattgttact ctttcttttg ctatatctac atgaactttt ttatcttcta
     2821 ttatcttatt ttttctaact atgatttctc ctatttttat cctttttttt gtaattataa
     2881 gctgttcagc ataaagtgga atgacttttt gtgtcttatc atttaagact tcattaattg
     2941 cttatcgaac tggaactctt tgagttgtct tcatcgaata atggaatctc agtctctttt
     3001 actcttacct gttgtctatc tttttcgttt tgttg
//
LOCUS       DATCMF010000078         1615 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_147926, whole genome shotgun sequence.
ACCESSION   DATCMF010000078 DATCMF010000000
VERSION     DATCMF010000078.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1615)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1615)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1615
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_147926"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            103..297
                     /locus_tag="VIL14_00970"
     CDS             103..297
                     /locus_tag="VIL14_00970"
                     /inference="COORDINATES: protein motif:HMM:NF013777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEY8522309.1"
                     /translation="MKDLSTTTLSIRLKELEKNGIMERQRYNEIPPRVEYRLTAKGQE
                     LVESVVSILQWMRKWSNRKR"
     gene            complement(355..1053)
                     /locus_tag="VIL14_00975"
     CDS             complement(355..1053)
                     /locus_tag="VIL14_00975"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF024811.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEY8522310.1"
                     /translation="MAMEGPFIFFDLGQTLVDEWRFIDYLDHKLLELLNGFGAKIDIR
                     NYKAVRDNVIRSRKIGNGSTRELIIEVCRLVSQHGYERIIADRLKDDINEGRKKLFRF
                     YYDAKPTLRVLSQKYMLGIIANQSGDILQLLDKFNITSFFKVIVISSQVNINKPDPRI
                     FQLAMDRAKNSTHYIMIGDRLDTDIGPANKLGMKTIRYTNSLFRLQEPIDKSEMATHI
                     VDRLSEIPDVLQRI"
     gene            complement(1259..>1615)
                     /locus_tag="VIL14_00980"
     CDS             complement(1259..>1615)
                     /locus_tag="VIL14_00980"
                     /EC_number="3.6.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HEY8522311.1"
                     /translation="NYRHGARTNLLELPGGLINPEEEPLAAAKRELLEETGYECNTLE
                     YINWTYTWPGRTTQKNFVFLAKGLKKHGNPNLEEFEYTKIRKLTKELAIQEIRSGNIR
                     SAISISAILYTLGGMQ"
BASE COUNT          515 a          299 c          265 g          536 t
ORIGIN      
        1 attgcgaaat taacaaatat aattacaaaa aagagggaca gttgaaatac taatcctttt
       61 atgctgcaca acaaaacctg ctagacataa gcaattcaag cgttgaaaga cttaagcaca
      121 acaacacttt cgattagact caaagaacta gaaaagaatg gtataatgga aagacaaagg
      181 tacaatgaaa taccacccag agtcgaatat agacttacag ccaaaggaca agaacttgtt
      241 gaatcagttg ttagtatact gcaatggatg aggaaatgga gtaacaggaa gagataatat
      301 acaattgtaa tgataaaaaa agcggtatga attaatcact cgggatcgat ggatctatat
      361 tcgttgcaac acgtctggta tttcacttaa cctgtcaaca atatgcgttg ccatctctga
      421 tttgtcaata ggttcttgca gtctgaaaag tgagtttgta tatctaatcg ttttcatgcc
      481 aagtttattt gctggaccta tgtctgtatc aagtctatct cctatcatta tataatgtgt
      541 tgaattttta gcacggtcca tagctaattg aaatattcta ggatctggct tgtttatatt
      601 aacttgcgat gatattacta tcaccttgaa gaaactcgtt atgttaaatt tgtctaacag
      661 ttgcaatata tctccagatt ggttagctat tatcccaagc atatacttct gcgaaagaac
      721 tctaagggtt ggttttgcat cataataaaa tctgaatagc tttttccgtc cctcattgat
      781 atcgtctttc agtctatcag caataattct ttcataaccg tgttgagata ctaacctgca
      841 aacttcaata ataagttccc tagtactgcc gttacctatc ttgcgacttc tgataacgtt
      901 gtccctgact gctttgtaat tacgaatgtc aatttttgct ccaaatccat ttaataattc
      961 taataattta tgatccaaat aatcaataaa tctccattca tccactagtg tctgtccaag
     1021 gtcaaagaat atgaacggtc cttccatcgc catctcatga aattacatag acagcagaat
     1081 gatttttggt atcctaagaa actgggaatc attggtgcaa taatgatggt aagtgtagcc
     1141 atcttcattt acgaatgtcg tatctagact gcacaagtct aaattagtac gaaaaagatt
     1201 cattgtaaat caacatggtt gaaaactgaa gaacaaccaa ctcaactttt aattgttatt
     1261 actgcatccc ccctaatgta tagagaattg cagagattga tattgcactt cttatgttac
     1321 cagatctaat ctcctgaatc gctagctcct ttgttaactt tcgaattttt gtatattcaa
     1381 attcttctag atttggatta ccatgtttct taagaccttt cgctagaaat acaaaattct
     1441 tttgtgtagt tcttccaggc caagtatatg tccaattaat atattcaagt gtattacatt
     1501 catatccagt ttcttcgagc aattctcgtt tagcggcggc taatggttct tcttcgggat
     1561 ttataagtcc tcccggtaac tctaacaggt ttgttcttgc tccatgacga taatt
//
LOCUS       DATCMF010000079         1659 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_15693, whole genome shotgun sequence.
ACCESSION   DATCMF010000079 DATCMF010000000
VERSION     DATCMF010000079.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1659)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1659)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1659
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15693"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..437
                     /locus_tag="VIL14_00985"
     CDS             <1..437
                     /locus_tag="VIL14_00985"
                     /inference="COORDINATES: protein motif:HMM:NF014841.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEY8522312.1"
                     /translation="DRTYFVNEIGGPDMLSQWLVRADYVSIHIPLTEETRGLISENEL
                     NSMKNSAFLINVARAAIVDRESLLNALTNKIIAGAAFDVFWEEPPNINDKLLHLDNFL
                     LTPHVAGWTSESVEAITNIIVMNIVRILHGELPLTIVNRELI"
     gene            complement(904..>1659)
                     /locus_tag="VIL14_00990"
     CDS             complement(904..>1659)
                     /locus_tag="VIL14_00990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522313.1"
                     /translation="IFRIYRDIMANYESSDEKLRISYPKIIVDVVSILDKGVNIEGKK
                     IAPYQVEIYYQRRKTNVGTSIAAQPVTPPTSTSATAASIVTIEKKKNEEPQDNSLPKL
                     KPTDSYEHLNQVNEEDKEKIIESLNKITSRSKKELEFSLTKLQRIDIIRLRHLCENYG
                     KLQKYCEIIHGSEEKFKVELQKDIGRKLSHHQLQRAANSIKQAKMYIENVLDGKFEPH
                     GSYGINHVKHNLEYGYQLTGLIQSKRRSSTHKK"
BASE COUNT          480 a          290 c          283 g          606 t
ORIGIN      
        1 ttgataggac ttactttgta aacgagatag gaggaccgga catgctttct caatggcttg
       61 tccgtgcaga ctatgtttca attcacatac cacttacaga agaaactaga ggactgatat
      121 cggaaaatga actgaattca atgaaaaatt ctgcattttt gataaatgtt gctcgcgctg
      181 caatagttga tagagaatcc ttacttaacg ctttaaccaa caaaataatt gcaggagctg
      241 catttgatgt gttttgggaa gaacctccga acattaatga taaattatta caccttgaca
      301 attttctact tactccacac gttgcaggat ggacctccga atctgttgaa gcaataacaa
      361 acattattgt aatgaatatt gtcagaattt tacatggaga attaccatta actattgtga
      421 accgtgaatt gatttgatga ttggcttatc ttttatttag atctaatttc tgcattgtta
      481 aaaaagagag tatcgggttc aaaatacgtt aacgataata gtctatatct agtgctatcc
      541 acggtttgat gctcttgtgt cattacctgc acatggtatt tctgcaaaac acttgggaaa
      601 agtgattttt catactgatg atgtagaccg gtaatattca tatcacaaga aaataaagaa
      661 gacctattaa atggatacta tttgaaaatc gaatccacag atgctccata gtatgagagg
      721 tattttcact caaggaaaaa taaagattta aacggtgctt tttccttttg ttctatgttt
      781 tggtctaatt gtaacatact ttactttttt gcaccggtat tatcaaaaca aagttgcatc
      841 tatcaatctt cgaaaacgag gttgacattt attagtacga tagaacagtt acagtgtctt
      901 tcttcatttc ttgtgagtag agcttcgcct cttagactga attagtcctg taagctgata
      961 gccatattct agattgtgtt tgacatggtt aataccgtat gaaccatgtg gttcaaattt
     1021 gccgtccaaa acattttcaa tatacatttt ggcttgtttt atggagtttg cagcacgttg
     1081 aagctgatga tgagaaagtt ttcttccaat atccttctgt agctctacct tgaatttctc
     1141 ttcagatccg tgtattatct cacaatattt ttgcaatttt ccatagtttt cgcacaggtg
     1201 tcttaatctt ataatatcta tcctctgaag ctttgtaagt gagaattcca gttctttttt
     1261 gcttctactg gttatcttat tgagactttc aataattttt tccttatcct cttcattaac
     1321 ctggtttaga tgctcataac tatctgttgg ctttaattta ggtaatgaat tatcttgggg
     1381 ttcttcgttt ttctttttct ctatcgtgac aatactagca gcagtcgccg atgttgatgt
     1441 tgggggagta acaggctgtg cagctattga agtacctaca tttgtcttcc ttctttgata
     1501 atagatttct acttgatatg gtgcgatttt cttgccctca atatttaccc ctttatcaag
     1561 aatagatacc acatcaacaa taatttttgg atatgatatt cttaatttct catctgaact
     1621 ctcataattt gccataatat ccctgtagat cctgaaaat
//
LOCUS       DATCMF010000080         1897 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_76416, whole genome shotgun sequence.
ACCESSION   DATCMF010000080 DATCMF010000000
VERSION     DATCMF010000080.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1897)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1897)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1897
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_76416"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(121..531)
                     /locus_tag="VIL14_00995"
     CDS             complement(121..531)
                     /locus_tag="VIL14_00995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522314.1"
                     /translation="MVLKNAINSDILIKLYKIYDSHRDAVLWFLEELDVDSYEEYIQK
                     YGGSSIQRSYFIAVCGFFELSGVIISHRMIDPDIYFDMFNPTPFWNKAAPAIEGMRKK
                     RPHIYENFEMLNNKRLGWTKKREDDKKKFSHNIK"
     gene            745..1542
                     /locus_tag="VIL14_01000"
     CDS             745..1542
                     /locus_tag="VIL14_01000"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY8522315.1"
                     /translation="MKYDWDASTYDNISDVIESWGLDLIERLNWKGNEIVLDAGCGSG
                     RLTKIISTKLPKGKVFAVDLDSSMIKLANERLGIISNVKFIQSNICDIELQDKIDVIF
                     SNAVLHWISNHRKVFEHFWQILKPNGQLSIQCGGYGNLTKTLSVFNKVRKSLEFCNYF
                     CNRKGESIWNEPWYFAKAEDTEKILKEIGFKNIEVSLENKVAKFHDKEDYFIFIKTIV
                     LRPYLEYLSNDKLKNMFAKAVVHEIETNFKELQWKLDYVRLNIHAKK"
     gene            complement(1563..>1897)
                     /locus_tag="VIL14_01005"
     CDS             complement(1563..>1897)
                     /locus_tag="VIL14_01005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522316.1"
                     /translation="LRYFYNPSKTFFHLFMHTSVYDKITNENIEKQGILLRSWNPITK
                     RGERYVFRKGEEGDGDLNLKRVYLPNTKTIFKFASSEDVKEESYKLAEEIIKECPHKD
                     IELKFSND"
BASE COUNT          687 a          268 c          245 g          697 t
ORIGIN      
        1 tatatatttt atagtaatat aatgatctta aatatacttc aaattttttc aatatattat
       61 atttttaaat ttataggcaa aataattgca tttactatac taaaattggt atgatctttt
      121 ctatttgata ttatgagaaa atttcttctt atcatcctct cgtttttttg tccatcctaa
      181 tctcttatta tttaacattt caaaattctc ataaatatga ggtctctttt ttctcattcc
      241 ttctattgca ggtgctgcct tattccaaaa tggagtagga ttgaacatat caaagtaaat
      301 gtcaggatct atcattctat ggcttataat aacacctgat aactcaaaaa atccacaaac
      361 agcaataaaa taagatcttt ggattgaaga tcctccatac ttttgtatat attcttcata
      421 actatcgaca tctagttctt ctaaaaacca aagtactgca tctctatggc tatcataaat
      481 tttgtataat ttaattagga tatcagaatt tatagcattt tttaaaacca taatagaaat
      541 atatgtaaga agtagataaa cgattcatta tcatcaataa ttaaatgtac atattattat
      601 tcaaaattta atgtgaaaat ctaatgtgta gaaaagattt aaaatactct actctatgat
      661 aaatggcttg cacgacatga tagtcagtag ttttttacac attttatgtt agtttatata
      721 aatactaatc caaatacctc tgttttgaaa tatgactggg atgcatcaac ttacgataat
      781 atctctgacg taatagaatc atggggatta gatttaatag aacgtctaaa ctggaaagga
      841 aatgaaatag ttctggatgc tggttgtggt tctggtagat taaccaagat aatatctact
      901 aaacttccaa aagggaaagt ttttgcagta gatcttgatt catctatgat aaaacttgca
      961 aatgaaagac taggaataat ttctaatgtt aaattcattc aatcaaatat ctgtgatata
     1021 gaacttcaag ataaaataga tgttatattt tcaaatgctg tattacattg gatctcaaat
     1081 cacagaaaag tgtttgaaca tttttggcaa attctcaaac caaatggtca actatcaatt
     1141 caatgcggtg gatatggaaa tttaacaaag actctgtctg tattcaataa agtccgaaaa
     1201 tcactagagt tttgtaatta tttttgcaat cgtaaagggg agtcaatttg gaatgaacca
     1261 tggtattttg cgaaagcaga ggatacggaa aaaatcctaa aagaaatagg ttttaaaaat
     1321 atcgaagtat ctctagaaaa taaggttgct aaatttcatg ataaagaaga ttactttatt
     1381 ttcataaaaa caattgttct acgaccgtat ttagaatatt tatccaatga caaattaaaa
     1441 aacatgttcg ctaaagcagt agttcatgaa attgaaacta actttaaaga attacaatgg
     1501 aaattagatt acgttagatt aaatattcat gcaaaaaaat agtatattaa attttgaatt
     1561 tattaatcat tgctaaattt taattcaata tctttatgtg gacattcttt aattatctct
     1621 tctgctaact tgtaactttc ttcctttaca tcttcactac tagcaaattt aaaaattgtt
     1681 tttgtatttg gtaaataaac tctctttaaa ttcaaatcgc catcgccttc ttctcctttt
     1741 ctaaaaacat agcgttctcc tcgtttggtt ataggattcc aacttctcaa caatattcct
     1801 tgtttctcta tattctcatt cgttatttta tcataaacac ttgtatgcat aaagagatga
     1861 aaaaatgtct tacttggatt gtaaaaatat cttaaag
//
LOCUS       DATCMF010000081         1739 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_16104, whole genome shotgun sequence.
ACCESSION   DATCMF010000081 DATCMF010000000
VERSION     DATCMF010000081.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1739)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1739)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1739
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16104"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(353..589)
                     /locus_tag="VIL14_01010"
     CDS             complement(353..589)
                     /locus_tag="VIL14_01010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522317.1"
                     /translation="MIYNKKSILISLFLILPLQISFAQINNTSNHKLDNTTTVTIEDS
                     IVGEKLELVQNQNQSNTAGKIIEELVSEEEPKKE"
     gene            768..1295
                     /locus_tag="VIL14_01015"
     CDS             768..1295
                     /locus_tag="VIL14_01015"
                     /inference="COORDINATES: protein motif:HMM:NF033823.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="archaemetzincin family Zn-dependent
                     metalloprotease"
                     /protein_id="HEY8522318.1"
                     /translation="MEIIIQPIEKNISNDILNLLSDSLSTEFNNVNVIITPTLKVGIQ
                     NFINRQRNQLKSPVILHYILDKMKPTKEMKILVICDMDAYSGELNFVFGEAHLRGSIA
                     AIYLARLKQEFYGLESNELVFYDRVTKEAVHELGHSFGLFHCNNKRCVMHFSNSLYDT
                     DFKNRIFCKNCKNKL"
BASE COUNT          648 a          227 c          228 g          636 t
ORIGIN      
        1 tcgaatacca aaatcaaggt aaacttttac aatggatcag aacttatttt gaaaatacca
       61 aattttttga tgcaagaata tgaatattaa taaatattaa gatgatattg ttatttttat
      121 cactattata agatcttaat aatagattta gtataattta attttcactt aacaaaattt
      181 caacagtaaa atcattacaa tcaattttaa caaaactcga taaatttttt aatatttaga
      241 aaaattaatg gcgagtgaat atataacatt caaaatatat tgttaaataa aagattacga
      301 tcataataat aaattaacca atatttttta gaacttataa cttatttcgc tcctactctt
      361 tctttggttc ttcttctgaa actagttctt ctataatctt tccagcagta ttagattgat
      421 tttgattttg aactagttct aatttttctc ctacaattga atcctcaatt gtaacagtag
      481 tagtattatc caatttgtga tttgaagtat tatttatttg tgcaaaagat atttgtaaag
      541 gaagtattaa aaataatgaa attaaaattg atttcttatt gtatatcaaa ttgttagtta
      601 taatatccta ttttttatat taaaattttt taaaacaaga tatctataaa aaaactgaat
      661 aatgttctcc atactatttc ttttttgtaa aaattaggtg tttaattctt ttagcctatg
      721 agattgtata aaatattttt taaacttcaa ttataattat aatatatatg gaaattatta
      781 tacaacctat cgaaaaaaac atcagtaatg atattttgaa tttattatct gattctctat
      841 ccacagaatt taataacgtt aatgttatta ttactccaac attaaaagtt ggtattcaaa
      901 acttcattaa tagacaaaga aaccaactta aatcaccagt catattgcat tatattttag
      961 ataaaatgaa accaacaaaa gaaatgaaaa tcttagttat ttgcgatatg gatgcatatt
     1021 ctggagaatt aaattttgta tttggtgaag cccatttaag aggaagtatt gcggcaatat
     1081 atcttgctcg attaaaacag gagttttatg gtcttgaatc taatgaattg gtattttatg
     1141 atagagttac aaaagaagca gtccacgaat taggacattc ttttggtttg tttcattgta
     1201 ataataaaag atgcgttatg cattttagta attcgctgta tgatactgat ttcaaaaaca
     1261 gaatcttttg taaaaattgt aaaaataaat tatgatctag ctagccaaag tatttagtta
     1321 tttggtaact tatttcaaat cttcgtctgt tatttctgat aaaatataaa aaaagaacta
     1381 agacaaggag tagtaggatt tgaatcttta tactaagtag agtgagtaat ttcactttta
     1441 ctaataacgg ctatagtggg atcgataata taattccgtg aattagactg tgcaatttca
     1501 tactcaaact tggaaacata tctagtcagt atttttaaat aaaccttcta ctgaaactat
     1561 tagataagaa taacatagat aaaagacaga gtcaaagata ttaaatttgt gccgcacctc
     1621 catccacgaa cagttcgata ccggtaacat aactgctctc atccgacgca aggaacgtga
     1681 cgacttttgc aacttcatcc ggagtgccca tcctcctcag cggcacagtg ctgacaagg
//
LOCUS       DATCMF010000082         1920 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_540154, whole genome shotgun sequence.
ACCESSION   DATCMF010000082 DATCMF010000000
VERSION     DATCMF010000082.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1920)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1920)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1920
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_540154"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..275
                     /locus_tag="VIL14_01020"
     CDS             <1..275
                     /locus_tag="VIL14_01020"
                     /inference="COORDINATES: protein motif:HMM:NF013053.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="isochorismatase family protein"
                     /protein_id="HEY8522319.1"
                     /translation="SNLPLILKNLGITHLVITGITTDVCVHTIMREANDNGYWCTLLK
                     DGTGATDYGNYQAAIKQIKMQGGVFGWVSDSARFVKGLKSAFDNKR"
     gene            511..681
                     /locus_tag="VIL14_01025"
     CDS             511..681
                     /locus_tag="VIL14_01025"
                     /inference="COORDINATES: protein motif:HMM:NF013706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HEY8522320.1"
                     /translation="MSKVLTLEPGDIISTGTPIGTALSLSSDLKYLRHNDIVEVEIEK
                     IGKITNRVRVID"
     gene            complement(718..1053)
                     /locus_tag="VIL14_01030"
     CDS             complement(718..1053)
                     /locus_tag="VIL14_01030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522321.1"
                     /translation="MKNVVISKNAINFLHLQKKIRNPIIVIYRGICNISYGYGREFIF
                     IPKLKVFDGKKPNNKYFMMYDDSCGIPVWIENGLLSRLENKPILITLKKGLLKGLKLE
                     TGYSILATQ"
     gene            complement(1106..1372)
                     /locus_tag="VIL14_01035"
     CDS             complement(1106..1372)
                     /locus_tag="VIL14_01035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522322.1"
                     /translation="MQVDQKKVLNYLFLNLDPMRKIFNVTALILYVGLTFAYLTMVQM
                     ITAQVELPTNTNVTLLNETLTNNTNNTVSNATNDTTEMVENSSP"
     gene            1552..>1920
                     /locus_tag="VIL14_01040"
     CDS             1552..>1920
                     /locus_tag="VIL14_01040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522323.1"
                     /translation="MALGELVEDSRGKITGQRVLEVEIPKMETSFAMEGNYRGTACTD
                     IGTYTSVLRGGVLFGEGQGIITTKDGQGMATWTGQGIGKFTAPGKVSFRGSIFLRTPS
                     TPEGGKLSSLNNMVAVFEYEA"
BASE COUNT          637 a          307 c          378 g          598 t
ORIGIN      
        1 aaagcaacct gcccttaatt ttaaagaatc taggaataac tcacttggtg ataactggaa
       61 tcacaacaga tgtgtgtgtg catacaataa tgagagaagc aaatgacaat ggctattggt
      121 gtactcttct aaaagatggc acgggtgcta ctgattatgg taactaccag gcagcaataa
      181 agcaaattaa gatgcaaggt ggtgtctttg gttgggtttc agattctgcc aggtttgtta
      241 aaggactgaa gtctgcattc gataataaaa gatgatagta aaagcaataa tatttactac
      301 taatctataa tgagttaatg aattaagaac cgctattgta ttgctaggtg caacaataat
      361 actttgtaat tggaatatca actaaccact gcagacgaaa ttatagatcc atgtaatctg
      421 catataacta caagagagaa cagagatata agaacaagat tcgtctactg caaaccttgt
      481 cttaaagatt aatgaaataa tatctctaag ttgagtaaag ttttgacact tgagcctgga
      541 gatataatat ctacgggaac tccaattggt acggcactat cattatcgtc agacttaaag
      601 tacctaagac ataatgatat agttgaagtt gagatcgaga agattggaaa gattacaaat
      661 agggtccgag ttatagacta gatgttgtat tgatattaaa agccgtacct agtgatgtca
      721 ttgtgtagca agtatactat atccagtctc caactttaaa cctttgagta aacccttctt
      781 cagtgttatt agaatgggtt tattctctaa gcgcgacaaa agtccgtttt cgatccaaac
      841 aggtatgcca caactatcgt catacatcat aaaatatttg ttgttaggtt tcttaccgtc
      901 aaataccttc aattttggaa taaaaatgaa ctctcttcca taaccgtagc taatattaca
      961 tatacctcga tatatcacga taattgggtt tcgtatcttc ttttgcaagt gaagaaaatt
     1021 aattgcattc ttggatatta ctacattctt caataattct cgcctttatt caaccgaccc
     1081 ttgtgaaagc aatctggtat tggtgtcagg ggcttgaatt ttcaaccatt tctgtagtat
     1141 cattagtagc atttgatacg gtgttattag tgttattagt gagtgtttca tttagtagtg
     1201 ttacatttgt atttgttggt aattccacct gtgctgttat catttgtacc atagtcagat
     1261 acgcaaaagt tagtcctaca tatagaatca atgcagtaac attgaatatt tttctcattg
     1321 gatctaagtt aagaaataaa taatttaata ctttcttctg atcaacctgc ataatagcga
     1381 atactttttt tctatggcat tattaacctc taacctaaag tcaaattatg aagattttgt
     1441 tgtgaaacag gtaggataat ttaggaaaat gaaggatgaa gttttagaaa ccgcaggaag
     1501 actcaatcct tgtttttctt taaatacctg attctctcaa acagcgacat tatggcatta
     1561 ggagaactag tcgaagattc tagaggtaaa ataactggtc aaagagttct ggaagtagag
     1621 atacccaaaa tggaaacttc tttcgcaatg gagggaaact ataggggaac tgcatgcaca
     1681 gatattggga cttatacgtc tgtgctaaga ggaggagtat tatttggtga aggacaggga
     1741 ataataacca ccaaagatgg ccagggtatg gcaacgtgga caggtcaagg aataggcaag
     1801 tttacggctc caggaaaagt cagtttccgt ggttcaatat tcttgcgaac accttcaaca
     1861 cctgagggag gaaaattgtc gtctcttaac aacatggtag cagtgtttga atatgaggca
//
LOCUS       DATCMF010000083         1533 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_407789, whole genome shotgun sequence.
ACCESSION   DATCMF010000083 DATCMF010000000
VERSION     DATCMF010000083.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1533)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1533)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1533
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_407789"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..232)
                     /locus_tag="VIL14_01045"
     CDS             complement(<1..232)
                     /locus_tag="VIL14_01045"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY8522324.1"
                     /translation="MSKRRILIIDDDPDINNLFKLFLEHDGYKVDAYIDPVDALYAFR
                     KNTFDLILLDLKMPKMSGMLLYQKLRNIDSHLL"
     gene            628..1335
                     /locus_tag="VIL14_01050"
     CDS             628..1335
                     /locus_tag="VIL14_01050"
                     /inference="COORDINATES: protein motif:HMM:NF012383.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase family protein"
                     /protein_id="HEY8522325.1"
                     /translation="MSTKFHDRKEAGLLLAERLKVYNRNTFGSEEEEAKKESFIVMAI
                     PRGGVILGDIIASELNIGMDIIICKKIGAQNNPELAIGAVMADGSYIINDEIVNRINT
                     SPEYISKQVEIQKKEIERRLIEFRGNKEYNNNTLKDKVVILVDDGIATGATMLAAVKW
                     LKEKHYCKRLVVAVPVAPLESSILEKLNQIADKVIVIFTPYDFAAVGQFYEHFDQVSD
                     KEVKEIMKKYGFNSQET"
BASE COUNT          574 a          177 c          238 g          544 t
ORIGIN      
        1 ataagagatg ggaatctata tttctgagtt tctgatacaa gagcattcca gacatcttgg
       61 gcatttttaa atcaaggaga attaaatcaa aagtattttt tctaaaggca tacaatgcat
      121 cgactggatc aatataagca tcaaccttat atccatcatg ttctaaaaat aatttgaata
      181 aattattaat atctggatcg tcatctatta ttagtattct tctctttgac attttagtat
      241 cccagcactt atcaaaggtc aatatcctat atcaatatta aggaaacttt tgttgtgtat
      301 ttattgtatt taataattaa tagataaaaa aaagcaaatt aaaaatttac tatagaatac
      361 tgtcaaatgc atttattgct gaaccaacaa attttggcct tattttttga catgtttttt
      421 atttttcaaa agttatagtc agaaattatt ttttatttgg tcacattttt gagttatact
      481 gtatgacaac tttagctgtt ttatataaat ataataaaca aaaggtttaa tttattaaaa
      541 tcacaatttg tttaatttta taggtaatgg cgagttaata aaaggctaaa tgggtgtata
      601 taatttatgt atcttatata attatacatg tcaactaaat ttcatgacag aaaagaggca
      661 ggattattgc ttgctgaaag actaaaagta tataatagaa atacctttgg ctcagaagaa
      721 gaagaagcaa aaaaagaatc ttttattgtt atggccattc ctcgtggagg tgttatttta
      781 ggtgatataa ttgcgtcaga actcaatata gggatggata tcattatatg taaaaaaatt
      841 ggagcacaaa ataatcctga acttgcaatt ggtgctgtaa tggctgatgg aagctatatc
      901 atcaatgatg agatagttaa cagaattaat acgtcgccgg aatatatctc taaacaagta
      961 gaaatacaaa aaaaagagat tgaacgtcga ttaatagaat ttagaggaaa taaagaatat
     1021 aataataata cactaaagga caaagtagtc atattggtag atgatggcat tgcaactgga
     1081 gcaacaatgc ttgctgctgt taaatggtta aaagaaaaac attattgtaa aagattggtt
     1141 gttgctgtac ctgtagcacc actagaaagc agtatattag aaaaactgaa tcaaattgca
     1201 gataaagtaa ttgttatttt tactccatat gactttgctg cagtaggtca gttctatgaa
     1261 cactttgatc aagtaagtga caaagaggtt aaagaaatta tgaagaaata tggttttaat
     1321 tcacaggaaa cttaaattaa cttatctatt ggttttgtcg atagaaaatt tttatatttt
     1381 atcttcttga aaatactctt tattttgttc atatttatga actatgtctt ttattaataa
     1441 atattttagt ggtaatcctt tcttatttat ggttaaatga gataatgata atctcactta
     1501 attatttgaa ataattatac aaaatttaca caa
//
LOCUS       DATCMF010000084         2141 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_209087, whole genome shotgun sequence.
ACCESSION   DATCMF010000084 DATCMF010000000
VERSION     DATCMF010000084.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2141)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2141)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2141
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_209087"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1126)
                     /locus_tag="VIL14_01055"
     CDS             complement(<1..1126)
                     /locus_tag="VIL14_01055"
                     /inference="COORDINATES: protein motif:HMM:NF044564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522326.1"
                     /translation="MVKKELETALKFNGERIYSNIDKDIFLISRRNCDGLVAGTIIST
                     ALLKLDTRFTFRTIDYLDPDTVARIISEDHDFNIFIDLNIEDIGKIKNLKDKLLIIDH
                     NNTSQNLKDCEEYLLNPYLYGINGKNEISSGGLAYLIAEKLNKGNKKLSLLAIVSALA
                     EKQDTGIKKSLIGLNSEIASVASSTGIVNIRTDLVFNTLGYKPIHEALAYNISPFIEG
                     ITWNKENCYKILKNSGINTHKNGKLRTFAEISEEEKNIILDAITKFIFLSSRNNSNKE
                     IIENISSELINQLYEFVKEDNNSILHDGREFAFVINACIRNMKSELAIGICLGERNNT
                     LIETELLTNSYKANIVNSLEKIFKEKWRLIDNGSFVFINGE"
     gene            complement(1133..1582)
                     /locus_tag="VIL14_01060"
     CDS             complement(1133..1582)
                     /locus_tag="VIL14_01060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HEY8522327.1"
                     /translation="MARTHAHTHGKSHSIRPASKDAPSWINQKPKEIVELIVKLSDEG
                     LSPTEIGLKLRDEYAIPIVKPIVGKSITTILKDNNISSAMPEDLNRLLQKALGLQKHL
                     KTHNSDHRNVRSLELIESKIHRISKYYKYNGKIPSNWKYSAVIAQLE"
     gene            1681..1989
                     /locus_tag="VIL14_01065"
     CDS             1681..1989
                     /locus_tag="VIL14_01065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522328.1"
                     /translation="MNKPNIWIATAIVMVIGTTFFGLQSAVAQYTGSSNLEEELKLAQ
                     EKVSNAGQEGAYGSGTSMVSADTSQTAIFIVILVAIFGGVAAAFFAMSRSRHREPAKY
                     "
BASE COUNT          699 a          308 c          276 g          858 t
ORIGIN      
        1 cctctccatt aataaataca aatgaaccat tatcaatcaa gcgccatttc tctttgaata
       61 ttttttctaa tgagttaaca atattagctt tataactatt agttaatagt tcagtttcta
      121 tcaatgtatt gtttctttct cccaagcata ttccgattgc taattcagac ttcatatttc
      181 ttatacaagc attgatcaca aacgcaaatt ctcttccatc atgtaatata ctattattat
      241 cttcttttac aaattcgtat aattgattta ttagttcact ggaaatattc tcaataatct
      301 ctttgttact attatttcta cttgatagaa aaatgaattt agtgattgca tctaaaatga
      361 tatttttttc ttcttcagat atttctgcaa aagttctcaa tttgccattc ttatgagtat
      421 taatccctga atttttcaaa attttatagc aattttcctt gttccatgta ataccttcta
      481 taaatgggga aatattataa gctaatgctt catgtatggg cttatatcca agagtattaa
      541 aaactaaatc tgtcctaatg tttacaattc ctgtggatga tgcaacagat gcaatttcgg
      601 aattcaatcc aatcaatgat tttttaattc cagtatcttg tttttctgct aatgcagaaa
      661 ctatagctaa aagtgacaat tttttatttc ctttatttaa tttttcagct attaaatagg
      721 ctaatcctcc tgatgagatc tcattttttc catttattcc atatagatag gggtttagta
      781 aatattcttc acaatccttt aagttttgag atgtattatt atgatctatg atcaataact
      841 tgtctttgag attcttaatt tttccaatat cttctatatt taaatctata aaaatattaa
      901 aatcatgatc ttcagaaatt atccttgcta cagtatcagg atctaaataa tcaattgttc
      961 taaaagtaaa tcttgtatct aattttaata aagctgtaga tataattgtc ccagcaacta
     1021 atccatcaca atttcttctt gaaattagaa aaatatcttt atcaatattt gaatatattc
     1081 tttctccatt gaatttaaga gcagtttcaa gctctttttt aaccattatt atttattcta
     1141 attgtgctat tactgccgaa tatttccaat ttgaaggaat ttttccattg tatttgtaat
     1201 atttagaaat tctatgaatc tttgattcta tcaattctaa tgagcgaacg tttctatgat
     1261 cgctattatg agtttttaaa tgtttttgaa gtcctaatgc tttctgtaat agtctattta
     1321 aatcttcagg cattgcagag ctaatgttat tatcctttag aatcgttgta attgattttc
     1381 ctactattgg tttaacaatg ggaattgcat attcatctct aagttttaat ccaatttcag
     1441 ttggagataa tccttcatca gataatttca caataagttc tactatttcc tttggttttt
     1501 gattaatcca actaggggca tctttactag caggcctaat tgaatgagat tttccatgag
     1561 tatgagcatg agtacgagcc atcttaatat taatttttta ttgtatatct taaatgttac
     1621 ttaattattt tatttcatat gataaaagtt aaataattga atttaaaagt gaagattagg
     1681 atgaataaac caaatatctg gatagcgaca gcaatagtaa tggtgatagg aactactttc
     1741 tttggacttc aatcagcggt agcacaatat accggaagtt cgaatttaga agaagaattg
     1801 aaattagcac aagaaaaggt ttctaatgct ggacaagaag gagcttatgg ttcaggtaca
     1861 tctatggtaa gtgcagatac tagtcaaact gctattttta tagtaatact agtagcaata
     1921 ttcggtggtg ttgcagctgc attctttgct atgagtagaa gtagacatag agaaccagct
     1981 aagtactaat cttttttttt atttggaaaa ataatttatt tattatatgg ttgaattaat
     2041 aatattatta taataataat aatataatat tattcaagtt ctataacttt ccaacaaata
     2101 ttttatctta ttattttaca agtttaatgg aatataaata c
//
LOCUS       DATCMF010000085         2094 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_540471, whole genome shotgun sequence.
ACCESSION   DATCMF010000085 DATCMF010000000
VERSION     DATCMF010000085.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2094)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2094)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2094
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_540471"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1045..>2094)
                     /locus_tag="VIL14_01070"
     CDS             complement(1045..>2094)
                     /locus_tag="VIL14_01070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase domain-containing protein"
                     /protein_id="HEY8522329.1"
                     /translation="QKNCTTELDKRPTSIEYLTHFNCGRVSEGDNGQTTREFTLIIEE
                     NQNITISNAGHYFDAWTFNGTVPGPTMRMTEGDLVKINVINSKDSKHTHSLHTHSIHT
                     AEMDGVAVPLSSNSQGQLHEVADGHNTTSMEDVYESGMILPGKSFTYEFVAQPYGVYP
                     YHCHVNPIADHINRGLYGMMIIDPKEPREQMVEMVMTMNGYDMDYDLEGPVIPPSLAD
                     IRGEEEREEEKERDNEIYTVNGKAFDYMDNPIPLNVGEKNRIYLLNMVEFDLINSFHL
                     HGDMMAYIPGGTEYESTQVNDVIELGQANRGIVEFDYDNPGRYMFHAHVQEFTDLGWM
                     GLFDVRKEDAKSGST"
BASE COUNT          606 a          425 c          338 g          725 t
ORIGIN      
        1 tgaggtttgt cataaggaat ttgatgactt aaaagagcaa aagttatttc tgagtcacgg
       61 ttactaatta tgaagcctat taaaagagga acacgaacag aagcttcaat ccaaggctac
      121 ttccttggct tgcttcgaac caattctgtg gtattgagct agcttcttaa gagtccaggt
      181 aatctatgat ataaacaaag ttaggacata aaagcgtgtc aaatatggtt cacaaaccat
      241 tggccccact atgatattag ttctctaagt ggattcactc gagtgtggtt attagtactg
      301 ttttatgcaa actaaattac aatattcatc gatagattaa tctagtataa ctcgatatcc
      361 atccagctat tcctcgtgct cagaggtcaa atcgagataa catactatag ggtatattaa
      421 gatgaagttc tttcccgtca catgaatcgg ctttagattc ggtatcatga gttgatggga
      481 aacaaactct ccatgtttat tatgatattg tcattgtact ctgcaatgac atttccacat
      541 acaactttat cgctagctct aaccgctttt tttgttttga taatttcatt ccaatctgat
      601 attggcgaat ctgttgctgt agcctatata ttccctccac acaacaatat aggactactc
      661 tatcgaactg gcatttatta aattaatata ctttatagta cattctattc tatccgatag
      721 ataaatagat atgctatgta agtttttgtg agtttatgag tgtacaataa taaaggatat
      781 aaaaatatgc ttttagtatc gagtctaact ccgcctgtcc ttggtgagct ttttgttcac
      841 caccctctaa gatacaatgg ttacatggta tcgtcaaaca ggtaatgact ggaacgccag
      901 ccctgatacg caaggacaga tcagccttca tacaatgaag caagaatatc gttgacctca
      961 tgattgaaat aataatctac atggaatttg tagatgatag aggtagaaaa tgattatcct
     1021 atagtttaac tataaatctc caggttaggt actaccactt tttgcatctt ctttccttac
     1081 atcaaataat cccatccatc ctaaatcagt aaactcctgt acgtgtgcat gaaacatgta
     1141 tcttccagga ttgtcgtaat caaactctac tattcctcta tttgcctgcc ctaactcgat
     1201 tacatcattt acttgagtcg attcatattc tgtcccacca ggtatgtaag ccatcatatc
     1261 cccgtgaaga tggaatgaat ttatcaagtc aaactctacc atattaagta agtagattct
     1321 gttcttttct ccaacattta acggaatcgg attatccata tagtcaaacg cttttccgtt
     1381 tactgtatag atttcgttat ctctttcttt ttcctcctct ctttcttctt cacctcttat
     1441 atcggccaga gaaggtggta ttactggtcc ttccaaatca taatccatat catacccatt
     1501 catagtcatt accatctcca ccatttgttc ccttggttct tttggatcta ttatcatcat
     1561 accatacaaa cctctgttaa tatggtctgc aattggatta acatgacaat gatatggata
     1621 tactccgtat ggttgtgcta caaactcata tgtaaaactc ttgccaggta aaatcatgcc
     1681 gctttcataa acgtcttcca tcgatgtcgt attatgacca tcagcaacct catgtagctg
     1741 tccttgtgaa ttagacgata gtggaacagc aaccccatcc atctcagctg tatggatgct
     1801 atgcgtatgc agtgaatgtg tgtgtttgct gtctttacta tttattacat tgattttaac
     1861 tagatctcct tcagtcattc tcatcgtcgg acctggaact gttccattaa atgtccatgc
     1921 atcaaagtaa tgaccagcat ttgaaatggt tatattttgg ttctcttcta tgattagagt
     1981 aaattccctt gttgtctgac cattatctcc ttccgaaact cttccacagt taaaatgggt
     2041 taaatattct attgatgtag gtcttttgtc tagttcagta gtacaattct tttg
//
LOCUS       DATCMF010000086         1738 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_17104, whole genome shotgun sequence.
ACCESSION   DATCMF010000086 DATCMF010000000
VERSION     DATCMF010000086.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1738)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1738)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1738
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17104"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1638)
                     /locus_tag="VIL14_01075"
     CDS             complement(<1..1638)
                     /locus_tag="VIL14_01075"
                     /inference="COORDINATES: protein motif:HMM:NF024777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="discoidin domain-containing protein"
                     /protein_id="HEY8522330.1"
                     /translation="MTTNYKIYKNKMIKLILISFIISFTIIYSNLFQINSVEAQIGKF
                     GTFTGNNFKYVKDSELFQLNQFSIAVWFKTNNTDPHVSFLVNKGGFGSEASGENMNYG
                     FWITYLGHLQAGFEAKDSSNYFVTSKKPINDNKWHYATVTYDGSLLKLFIDGVLDHSI
                     NTKNAKPDITGKNRIAIAANSLFKDKLYVGDVDEVRIWDRALTTAEVYDAYTQNKFNL
                     DNQLVFVSFGDNTSCKPEKAVNVTSIGYSANNTELNAIDANQSTRWSKYGLDSWVQVD
                     LGKEKEVCDIDISWYKGDQRKIKFTVSTSVDGEIFSNLFSETSSGLSTGPEKFDIPDV
                     KARFLKITVNDNSINDWSSISEIDINNPIVPGSPSPCLPLNIPADHISSISSSPNNTE
                     GNAVDNDLSTKWSNLGLGSWLQFDLGQEKQICDIGISWYKGNLRYIDFTISVSSDGYD
                     FRQVFSSTNSYTTDESEVYDIPDTVGKYLRITVSGNSVNDWASINEVEVFANPIQKES
                     FSSASLINIVTQVINDNGGTKQSKDFILSVNGSQSSPN"
BASE COUNT          582 a          296 c          259 g          601 t
ORIGIN      
        1 attgggagat gactggctac cattaactga taaaataaaa tctttggatt gtttagttcc
       61 tccattatca ttgattacct gagtcactat atttatgagt gatgcagatg aaaatgattc
      121 tttttgaatt ggattagcaa atacctcaac ttcattgata ctggcccaat catttacact
      181 atttccacta acagtaattc taagatactt accaacagta tcgggtatat cataaacttc
      241 actttcatca gtagtataac tattggtgct tgaaaaaact tgtctaaaat cataaccatc
      301 agaagaaaca gagattgtaa aatctatgta acgaagattt cctttatacc aagaaattcc
      361 aatatcacat atttgttttt cttgtccaag atcaaattgt aaccatgagc ctaatcctaa
      421 attggaccat tttgtggaga gatcattgtc gactgcatta ccctcagtat tattagggga
      481 actacttatt gatgaaatat gatcggcagg gatatttaag ggtaaacagg gagaaggaga
      541 gccaggaact atgggattat taatatcaat ctcagatata cttgaccaat catttattga
      601 attgtcatta acggttattt taagaaagcg ggctttaaca tctggaatat caaatttttc
      661 aggtcctgta gaaagtccac tactagtttc agaaaataaa ttgctaaaaa tttctccatc
      721 gacagacgtg gataccgtga atttaatctt cctttgatca cctttatacc aagatatatc
      781 aatatcgcat acctcctttt ctttacctaa atcaacttga acccacgaat ctagtccata
      841 tttagaccat cgcgtcgatt gattagcatc aattgcattg agttctgtat tattggcaga
      901 ataccctatg gaggtaacat taacagcttt ttcaggttta caagacgtat tatcgccaaa
      961 tgacacaaat actaattgat tatctaaatt gaatttgttt tgtgtgtatg catcatatac
     1021 ctctgctgta gtaagagctc tatcccaaat gcgaacttca tctacatcac ccacatataa
     1081 cttatctttg aagagagagt tggcagcaat ggcaattcta ttttttcctg taatatcagg
     1141 ttttgcattc tttgtattta tactatggtc aagcacacca tcgataaata acttcagtaa
     1201 ggagccgtcg taagtcactg tggcgtaatg ccatttattg tcattgatgg gttttttaga
     1261 agtaacaaaa tagtttgaag agtcttttgc ttcaaatcct gcttgaagat gccctagata
     1321 ggttatccaa aatccatagt tcatattttc accagaagct tcggatccaa atccaccttt
     1381 attaactaaa aatgaaacat gaggatctgt attatttgtt ttgaaccaaa ccgcaattga
     1441 aaattggttt aattgaaata attctgaatc ttttacatat ttaaaattat tacccgtaaa
     1501 ggttccaaat tttccaattt gtgcttctac actatttatt tggaaaagat ttgaataaat
     1561 aatggtaaat gaaattataa atgaaatcaa aattaactta atcatcttat ttttataaat
     1621 tttataattt gttgtcatta tctctcacca agaattagtc aaataaattt gttttatcac
     1681 tttcagaaat ttaccaagat gtcctataat ctattttacc aaaaatagtt gataaaaa
//
LOCUS       DATCMF010000087         2618 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_17217, whole genome shotgun sequence.
ACCESSION   DATCMF010000087 DATCMF010000000
VERSION     DATCMF010000087.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2618)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2618)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2618
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17217"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            177..662
                     /locus_tag="VIL14_01080"
     CDS             177..662
                     /locus_tag="VIL14_01080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522331.1"
                     /translation="MFEKKGRKNWKGEYEDTIYKIYDWDNNLAGYFYPTYNIQRISEM
                     EEEEIIVRMNENKDKVQGGHLMVPFLKLDLLDIDTLNIDEVIYRLQTNIQRAMVWKKW
                     IEDNKYKFNLAESLVCTSREDRNLLAVLFMINKEIILDEKVLVKEISPILDQLHIDQL
                     L"
     gene            complement(936..1460)
                     /locus_tag="VIL14_01085"
     CDS             complement(936..1460)
                     /locus_tag="VIL14_01085"
                     /inference="COORDINATES: protein motif:HMM:NF024258.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEY8522332.1"
                     /translation="MKIGVISDSHDDIINVRQAIKIFNKYGVDYVIHAGDYIFPGIVL
                     EFKNLNKNIKFIGVFGNNDGEKFGLVKSFITIGGNLMGDFGELRIEDEIFGIYHGTNE
                     DIKKTCLLANYYDVLICGHTHKKDNRKINRTQILNPGSAHRSLQNDELNKKASVIIYH
                     TGIKKYEFIELDQS"
     gene            1826..2533
                     /locus_tag="VIL14_01090"
     CDS             1826..2533
                     /locus_tag="VIL14_01090"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF024811.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEY8522333.1"
                     /translation="MKKLFLIFDLGQTLINEWNFLKFFDQKLLELINGFGGRIDWRNY
                     ITLRNNIIKNRMIGNGGMEELIITICRLILPMGYDRIILKKINSDLSYGKRKYFCLND
                     GAKKLIETMSKYHELGIMSNQPKEAIEPLINANIFSLFNRVVIPSQIKIKKSHEKLLF
                     EGIDFTGFPASRCIMIGDRLDIDILPANKLGMKTIRFTDSLFHMQSAKIKLELPTYTI
                     KKLEEIPNVIKDILCEF"
BASE COUNT          965 a          337 c          350 g          966 t
ORIGIN      
        1 gttttataaa agcactagct tgtattaatt tcagaagttt cttgggtttg aggctcttgc
       61 aaatatattc taatatagtg ttttttattc aacacgcatt atattagaaa ttgaattaaa
      121 aaatataata gaatatatag ataaattttt tattgtaata caatattcta catcaattgt
      181 ttgaaaaaaa aggaagaaaa aattggaaag gtgaatatga ggatactatc tacaaaattt
      241 atgattggga taataatcta gctggatatt tctaccccac atacaacata caaagaatta
      301 gtgaaatgga agaggaagaa attatcgtaa gaatgaatga aaataaagat aaagtacaag
      361 gtggtcattt aatggttcca tttttaaaat tggatctttt agacattgat actttaaata
      421 tagatgaagt tatttatcgc ttacaaacca atattcaaag agctatggta tggaaaaaat
      481 ggattgaaga taataaatat aaatttaatt tagccgagag tttagtatgc acatccagag
      541 aagatagaaa ccttttagca gtacttttta tgataaataa agaaataata ctggatgaga
      601 aggtccttgt aaaagaaatt tcacctattc ttgatcagct acatatcgat caattgttat
      661 aactattctt tgagggaact agttatattt ttgtggaatc tttaatatat taaagacaat
      721 gatattagtc ctaaactaga ttttctcttt atctatccca tcatcttgat ttaagtgaat
      781 ttgtaacatg tgagttaaat ctaacagttg tctttagcta aatctagttc gctattctac
      841 ggtatttgac agttggttgt atttgacgac atcttataga accattgaaa attgtttgag
      901 attataactg tgttaaattt catatagaat tactactatg actgatctaa ttctataaat
      961 tcatattttt ttattccagt atgataaatt ataacagatg cttttttgtt taattcatca
     1021 ttttgtaaac ttctatgggc gctacctgga ttaagtattt gtgtcctatt aatttttcta
     1081 ttatcttttt tgtgtgtatg accacatatt aaaacatcat aataattagc aagaaggcat
     1141 gtttttttta tatcttcatt tgttccatgg tatattccaa atatttcatc ctctattcta
     1201 agctctccaa aatctcccat aagattcccg cctattgtta taaaactttt aacaaggcca
     1261 aatttttctc catcattatt tccaaataca ccaataaact tgatattttt attaagattt
     1321 ttaaattcaa gtacaatacc tggaaatata taatctcctg catgaatcac atagtctaca
     1381 ccatatttgt taaaaatttt tattgcttgt cttacattga ttatatcatc atgagaatct
     1441 gatattactc caattttcat tataataaaa aacaatacaa atatttttat tttttatgtt
     1501 tcataattaa acatagatta taaaattcaa atttggacca cttgacaatt tcaaaaattc
     1561 taatttgata tattttaaat gtattgataa ttattactac tgattatttg tgatgttata
     1621 atacatattg taaatagcct accaatgaag agtaatgaaa catcgtaatt cattatagct
     1681 ttggtgatta ctttaaagaa actctaatac tagattaaaa tcatctctat gatttctaag
     1741 gaataattta actattttaa acttatgact taagtttttc caaatctaaa ctattaaata
     1801 aataaaaaac ttaaattcaa ttttaatgaa aaaactattt ttgatatttg atttgggaca
     1861 aacattgata aatgagtgga actttctaaa attttttgat caaaagcttt tagaattaat
     1921 taatggattt ggtggaagaa ttgattggag aaattacatt accttgagaa ataatatcat
     1981 aaaaaataga atgattggaa atggtggaat ggaagaatta atcatcacga tatgtagact
     2041 tattcttcct atgggttatg atagaatcat tttaaaaaaa ataaactctg atttatctta
     2101 tggaaaaaga aaatactttt gtctcaatga tggtgcaaaa aaactcatcg aaaccatgtc
     2161 aaaatatcac gaattaggga tcatgtctaa tcaacccaaa gaagcaatag aacctttgat
     2221 aaatgcaaac atattttcgc tgtttaatag agttgttatt ccgtcacaaa taaaaattaa
     2281 aaaatctcat gagaagttgc tttttgaagg aatcgatttt actggatttc ctgctagtag
     2341 atgtataatg attggagatc gtttggatat agatatttta cctgcaaata agttaggaat
     2401 gaaaacaata agatttacag attccctttt tcatatgcaa tctgcgaaaa tcaaacttga
     2461 acttcccaca tatactatca agaagctaga agagattcct aatgttatta aagatatatt
     2521 gtgtgaattt taaatcatct atgtaacaat ctctttaatt ctatcgttta aaatagcatc
     2581 ttttatttcc atagcaattc tcctcccgac tccgaatg
//
LOCUS       DATCMF010000088         1946 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_77046, whole genome shotgun sequence.
ACCESSION   DATCMF010000088 DATCMF010000000
VERSION     DATCMF010000088.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1946)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1946)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1946
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_77046"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(223..1737)
                     /locus_tag="VIL14_01095"
     CDS             complement(223..1737)
                     /locus_tag="VIL14_01095"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HEY8522334.1"
                     /translation="MTYLGNSINIAGKNRFLSSNLMYDTAEFLLGNNSDISNINSDIK
                     ELETNILTLKQGGKISDIELKPLPDEFSNDWDKIYQKWILLKTTLTNNVLKESQTRSS
                     MVVKVVASETSAPSSLSLSSSSSSPSSELEINNIIKTIKEREVLPLVNSSNVLVTKLG
                     EYAKDKSQYSIFLQILFAVLNIGVTTAFILYIIRKLLKPIFALINATSQIKSGNLNVV
                     VKSKVNGDELSFLSESFNSMVTAIKNYIKKQNELTKQLEKANEELKSRDQLKDEFINV
                     AAHELKTPIQPILGLCELLRDRKTDIIKDEEILDVIIRNSKRLMKLAEDILNVARIES
                     GSFFLKKERFDIGELISEIMNDIEEKIVENKKNIKMFFELYNGNNNSKIIIEADKNRL
                     SQVISNLLNNAIKFTDEGSITVIVGTKKINNNSNKVIVSIKDTGTGIDSEVLPKLFTK
                     FATKSPVAGGTGLGLFISKSIIEMHGGIIWAFNNDEKNKDDRGSTFTFSLPLQE"
BASE COUNT          617 a          281 c          247 g          801 t
ORIGIN      
        1 tactgttatt ctaacatttt ttttgttatc atgtaataag ttctcctact actgacttgt
       61 ctttagcttt tatcattaga aacttatttc aagataactt gagaatataa attaattttg
      121 agtgtgggga attctctaga aatttcaata taatctctta atagcttttt caaggaaatc
      181 tatttcatat tatttattat attgaagaat tactattagt agttattctt gtaatggtaa
      241 gctaaaagta aatgttgagc ctctatcatc tttattcttt tcatcattat taaatgccca
      301 tataatgcca ccatgcattt caattatact tttggaaata aataatccca aaccagttcc
      361 acctgctaca ggagatttag tagcaaattt tgtaaaaagt tttggcaata cctctgaatc
      421 aatacctgtt cctgtatctt ttatgctaac aataactttg ttactattat tattgatttt
      481 ttttgttcca acaataacag taatgctacc ttcatctgta aacttgatag cattgtttaa
      541 aagattggaa atgacttgac taagtctatt tttatcagcc tctataatta ttttagaatt
      601 attgttacca ttataaagtt caaaaaacat ttttatattt tttttatttt ctacaatctt
      661 ttcttcaatg tcattcatta tctctgatat cagttcaccg atatcaaacc tttctttctt
      721 taaaaagaaa gagccacttt caattcttgc aacatttaat atatcttctg caagtttcat
      781 tagtctcttc gaatttctaa taataacatc aagaatttct tcatctttta ttatgtcagt
      841 ttttctgtct cgaagtaatt cacagagtcc aagtataggc tgtataggag tttttagttc
      901 atgtgctgct acatttatga attcatcctt taattggtct ctagatttta attcttcatt
      961 tgctttttca agttgctttg ttaactcatt ttgtttttta atataatttt ttatagctgt
     1021 taccatggaa ttaaaagatt cgcttagaaa tgaaagttca tcgccattaa ctttgctttt
     1081 aaccactacg ttaagatttc cacttttaat ttgagatgtt gcattaataa gtgcaaaaat
     1141 tggctttaat aattttctta ttatgtaaag tataaaggca gtagtgactc caatatttaa
     1201 tacagcaaaa agtatttgga gaaatatcga atattgagat ttatctttag catattctcc
     1261 taattttgta accaagacat ttgaggaatt tactagaggt aatacttctc tctcttttat
     1321 tgtttttata atgttgttta tttctaattc tgatgatggc gatgatgatg atgatgataa
     1381 cgataaagaa gatggagctg atgtttcaga tgctactact tttactacca tcgaactacg
     1441 tgtttgactt tcttttaaaa cattatttgt taatgttgtt tttagcaaaa tccatttctg
     1501 atatatctta tcccaatcat tagagaattc atcaggcaat ggttttagtt cgatatctga
     1561 tatttttcca ccttgtttta atgtcaatat gtttgtctct aattctttaa tatcggaatt
     1621 aatattagaa atatcgctgt tatttcctaa taaaaattct gctgtatcat acataagatt
     1681 agatgagaga aatcgattct tacctgcgat atttattgaa tttcctaaat aagtcatttg
     1741 tgattgataa taagaaacta taatcagact aataatgata aaaaaaattt gaataaaaac
     1801 tagtattact attcttctgc ctatcttaga acgtaggagt ttgaaagcgt ccgtagaata
     1861 ttctagcata actatataaa aggaaagaac tatttggtta tatccatctt ctttttaaag
     1921 ttttgacatt aattattatt ttaaac
//
LOCUS       DATCMF010000089         2941 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_612532, whole genome shotgun sequence.
ACCESSION   DATCMF010000089 DATCMF010000000
VERSION     DATCMF010000089.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2941)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2941)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2941
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_612532"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..340)
                     /locus_tag="VIL14_01100"
     CDS             complement(<1..340)
                     /locus_tag="VIL14_01100"
                     /inference="COORDINATES: protein motif:HMM:NF024486.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA domain-containing protein"
                     /protein_id="HEY8522335.1"
                     /translation="MNTGRIFPSFDGIENFEQKTARYRINSEKTVPVTGPPGTGKSTV
                     ISHCCFDLLNDDYFPILVTAPTNVMIDSILSKIDSLLQREKIQLPRGFVIRYGNVANL
                     NRTYNHLMKYA"
     gene            complement(373..2025)
                     /locus_tag="VIL14_01105"
     CDS             complement(373..2025)
                     /locus_tag="VIL14_01105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522336.1"
                     /translation="MINTHSKWHFNHTDILNTNNIKNVDSDCQVLDFNSSNKNVPKVD
                     SFHKDIDNDYTLTSKDVIRKINPVVLPRISAIANIGLCERAAYNISFFGMESDNNFTA
                     EGVIGNAIHRITLRSIMEITQSLKNGSSNAINSSTNISTQRSKAKEIFIRNAERDIKI
                     NWKRFMLSNIENPLPCILDDLEIRSDRLVHQLFAKEEEADNKQIIFRPEFTIRNIKIP
                     LEGRLDLIKIKLSNKQREKGNNSYNGSKYLNPYVTADDLVNLEKESVEIVQIKTGNYR
                     PRTAVWNLQADAEALLLMQTLNLKEPPKYTWQFADKDGNRKKFDFAKVYKVIDKYIHI
                     WKSEVSPQITGFCPKCPLREGCLNWAFVSNNALTEDERIKRNIEFRLSKRIREEVSLD
                     DRWKAYVVLQSAEKRQREGSAITNLHIDTSSIDAEKQKITLLGDEYFGQFLDFSVGEH
                     VTISDGTPNLGSNPNAVIRAIDIDRKSITLEFYRDDLYYLLYDNRDKSPLTIDRFNFS
                     SGLISMKFLDSFFRLSSYANDIVLKKRSVKIDEQNIISMKRR"
     gene            complement(2022..>2941)
                     /locus_tag="VIL14_01110"
     CDS             complement(2022..>2941)
                     /locus_tag="VIL14_01110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522337.1"
                     /translation="DSSNFDSSFKILTERLLKEPFHFEPNNYQSGYAIPSILNLKVVV
                     IPYYEIIDGNIIQNVTGKEKLGAVTKQTTTIKSQKLKYIIDASTFAHSKIILVCKVKT
                     VDQARDFLADYLKAIGFKENNQTWDFIYNESDSIMQQLLLSLYDYWPTNESQTTSIKI
                     GGKTISANYSGRGKYDLRLEEVNDEIKNRIINGDHIENITLKPPIGITGIKLRKSVPK
                     ITINDQGVISCRANINYENFVIIKWFIEETINIIKQLNKVKQPKASYIKLEDFIPQEI
                     AHVTDSKLPIYDNSLKINNNEKILRGRND"
BASE COUNT          929 a          466 c          403 g         1143 t
ORIGIN      
        1 atgcatattt cataagatga ttatatgttc tatttagatt cgcaacgtta ccatatctaa
       61 taacaaatcc acgaggtagt tgaatttttt cccgttgtag aagagaatct atttttgaca
      121 aaatgctatc aatcatcaca ttggttggag cggtaactaa aattggaaaa taatcatcat
      181 ttaaaagatc aaaacaacaa tgtgagataa cagtggactt tccagtacca ggaggaccgg
      241 tgacaggaac tgttttttct gaatttattc tatatcttgc tgttttttgt tcaaaatttt
      301 caattccatc gaaggatgga aatattcgac cagtattcat tttttttata ctagtctatt
      361 cataaccaat gattaccttc ttttcatact tataatattc tgctcatcta tcttaacact
      421 tcttttcttt aatactatat cattagcata agacgacagt ctaaagaaac tatcaagaaa
      481 tttcattgat attaatccac tactaaaatt aaatctatca atagtaagag gtgatttatc
      541 tctgttatca tacaaaagat aatacaaatc atctctgtaa aattcaagtg taattgattt
      601 tctatcgata tcaattgctc ttataactgc attaggatta cttcctaaat ttggagtacc
      661 atcagaaata gttacatgtt cacccacact aaaatctaag aattgaccaa aatattcatc
      721 acctagtaat gtaatttttt gtttctcggc atcaattgaa gaggtatcaa tatgcaaatt
      781 tgtaatggca gatccttctc tttgtctttt ctctgccgac tgtaaaacta catatgcttt
      841 ccatcgatca tcaagtgaga cctcttctct tattcttttc gaaagacgaa attctatgtt
      901 tctttttatt ctttcatctt ctgttaatgc attattacta acaaatgccc aatttaagca
      961 tccttctcgc aatggacatt taggacaaaa accagtaatt tgtggagaga cctcagactt
     1021 ccaaatatgt atatatttgt ctattacttt gtatactttt gcaaaatcaa acttttttct
     1081 attaccatct ttatcagcaa attgccatgt atatttagga ggttctttta gatttaatgt
     1141 ttgcataagt aaaagagcct cagcatctgc ttgaagattc caaacagcag ttcttggtcg
     1201 ataattacct gtttttattt gtactatttc tacagattct ttttctaaat taactaaatc
     1261 atctgcagtc acatatggat ttaaatattt actgccatta tagctgttat ttcctttttc
     1321 tctttgttta tttgaaagtt taattttaat taaatccagt cttccttcga gaggaatttt
     1381 gatattacga attgtaaatt cgggtctaaa gatgatttgc ttgttgtctg cctcttcttc
     1441 ttttgcaaat aactgatgaa ctaatctatc agatctaatt tccaaatcat ctaggataca
     1501 aggcaaagga ttttctatat ttgaaagcat aaaacgtttc caattgattt tgatatctct
     1561 ttccgcattt ctaataaaaa tttctttagc tttagatctt tgtgtagaaa tatttgtaga
     1621 agaattgatg gcattactac taccattttt tagtgattgt gtaatctcca ttatagatct
     1681 taaagtgatt ctatgaattg cattacctat tactccttca gcagtaaaat tattatctga
     1741 ttccatgcca aagaaagaaa tattataagc agcacgttca cagaggccga tattagctat
     1801 agcacttatc ctaggaagta ctactgggtt tatttttctt ataacatctt tggaagttaa
     1861 agtataatca ttgtcaatat ctttatgaaa gctatctacc ttgggaacat ttttatttga
     1921 agaattaaaa tcaagaacct gacaatcaga atcaacattc ttgatattat tagtgttaag
     1981 tatatcagta tgattaaaat gccactttga atgagtattg atcaatcgtt cctgcctctg
     2041 agaatctttt cattattgtt aatttttaat gaattatcat aaattggcag ttttgaatct
     2101 gtgacatgag ctatttcttg ggggataaag tcttcaagtt tgatatatga tgcttttggt
     2161 tgtttgactt tatttagttg ttttattata ttgatagttt cttcaataaa ccactttatt
     2221 atgacaaaat tttcatagtt aatatttgct ctgcaactaa taactccttg atcatttatg
     2281 gtaatctttg gtacagattt tcttaattta attcctgtga tgcctattgg tggttttaat
     2341 gtaatatttt ctatgtgatc accattaata atacgatttt ttatttcatc attaacctct
     2401 tctaatctta aatcatattt tcctcttcct gaataattag ctgagattgt tttaccccct
     2461 atttttatag acgttgtctg actttcattt gtaggccaat aatcataaag tgagagaagt
     2521 aattgctgca taatagaatc tgactcatta taaataaaat cccaagtctg attgttttcc
     2581 ttaaatccta ttgcttttaa atagtctgca agaaagtcac gagcttggtc tacggtttta
     2641 actttacaaa ctaaaattat tttactatgt gcaaatgtac ttgcatcaat aatatatttt
     2701 aacttttgag atttaatggt tgtagtttgt ttagttactg cacctaattt ttctttacca
     2761 gtaacattct gaattatgtt tccatcaata atttcataat aaggaattac cacaactttg
     2821 agatttaaaa tagaaggaat agcataacct gactgatagt tattaggttc aaagtgaaaa
     2881 ggttctttta aaagacgctc ggttaagatt ttaaatgaag aatcaaaatt agaactatcg
     2941 t
//
LOCUS       DATCMF010000090         2054 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_342620, whole genome shotgun sequence.
ACCESSION   DATCMF010000090 DATCMF010000000
VERSION     DATCMF010000090.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2054)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2054)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2054
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_342620"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..513)
                     /locus_tag="VIL14_01115"
     CDS             complement(<1..513)
                     /locus_tag="VIL14_01115"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HEY8522338.1"
                     /translation="MIRKSWIVFLFAVILSFESILIEYLTLLLGISPLAISAFSIAIS
                     GVLLLLILNFVSNRETSSLVYSIKDFIPASIFLSVGIFTWYDAVSRVGASKESLLAGP
                     IEIIAVLFLARIFLHEKLNKKQISGICIALLGFIIVLLSDHNSGTNNNGIINVTIIEV
                     KTLNFSISFGD"
     gene            complement(700..1500)
                     /locus_tag="VIL14_01120"
     CDS             complement(700..1500)
                     /locus_tag="VIL14_01120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522339.1"
                     /translation="MVDQLAHVFAHSFNSDDSSYFLGLDKRTKIELELAEKNYPLNIT
                     LSMDHSDNAARLVYDIYYADDDIVEDSDFIKRYNKEVSSSNSTTFALVVADLLDEVLR
                     GYADALVIDTDLTNMSNLALLDELQNLTKQSNSTNFSSNSSDNNTEGTKSEQSKLLSR
                     NNSIFNYADYETAKALLVEIKDIFENHLKSSSNNAIGSQSVNDISKLEKDLEKLSNLI
                     NNNNGSPAEVMELVHLQIHPSLQTAFGLQTKMNMDGQMNMDGQMNMDG"
     gene            1704..1892
                     /locus_tag="VIL14_01125"
     CDS             1704..1892
                     /locus_tag="VIL14_01125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016862 - intramolecular oxidoreductase
                     activity, interconverting keto- and enol-groups [Evidence
                     IEA];
                     GO_process: GO:0006725 - cellular aromatic compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxymuconate tautomerase family protein"
                     /protein_id="HEY8522340.1"
                     /translation="MPVIQITMSEGRTLEQKRELVKVLTRETARILNSKEENMRILIY
                     EVSKENWGDAGILGVDMK"
BASE COUNT          770 a          270 c          278 g          736 t
ORIGIN      
        1 atcaccaaat gaaatagaaa aatttaatgt tttaacttca attatggtaa catttatgat
       61 tccattatta ttagtaccac tattatgatc acttagtagc acaattataa atcctaagag
      121 tgctatacaa attcctgata tttgtttttt atttaatttt tcatgaagga atattcttgc
      181 caagaagagg accgctataa tttcgattgg tcctgccaat agactttctt ttgatgcacc
      241 aactctgctt actgcatcat accatgtaaa tataccaaca gaaagaaaaa tagatgcagg
      301 aataaaatct ttaattgaat aaactagaga agatgtttct ctattactta caaaatttaa
      361 gattaataat aatagaactc cggatatagc aatactaaat gcagatatag ctaatggaga
      421 aattcctaat aatagtgtaa gatattcaat tagaattgat tcaaatgata aaataacagc
      481 aaataaaaaa actatccatg atttccttat caatagtaat taatatggta aaatttgggt
      541 aaagataaat cttccttaat atcaaattat tattcaagaa aaactttttg catttttgct
      601 tagataatta gctaattaat tataattatt tcaagggaac aaaaaaaata tataaaaatt
      661 taatttaatg actaatattc attaattatt gaatttctat catccatcca tgttcatttg
      721 tccatccatg ttcatttgtc catccatgtt catttttgtt tgtaatccaa atgctgtctg
      781 caaagatgga tgtatttgta aatgaaccaa ttccatcacc tctgctggcg aaccattatt
      841 attattaatt agattagata atttctcgag atccttttct agttttgaaa tatcatttac
      901 agattgacta ccgatagcat tattggatga tgattttaga tggttttcaa atatgtcttt
      961 aatttcaact aataatgcct ttgctgtttc ataatcagca taattaaata ttgaattatt
     1021 tcttgataag agtttagatt gttcagactt ggttccctca gtattattat ccgaactatt
     1081 tgaagagaaa tttgtagaat tagattgttt tgttagattt tgcaattcat ctaatagggc
     1141 taaattagac atatttgtaa ggtcggtatc tattactaat gcgtctgcat agcctcttaa
     1201 tacctcatct aaaagatcag caacaacgag ggcaaatgtt gttgaatttg aagaggaaac
     1261 ttctttgtta tatcttttaa taaaatcact atcttccaca atgtcatcat cagcataata
     1321 gatatcatat actaatcttg cggcattatc agaatgatcc atagataaag taatattcaa
     1381 aggatagttt ttttccgcga gttctagttc tattttcgta cgtttatcta aacctagaaa
     1441 ataagatgaa tcatcagaat taaaactatg agcaaaaaca tgtgctagct gatcaaccat
     1501 cgaaaatgaa ataacaaaaa tggctacgct aaaaattgaa gtaaacttta gaacattatt
     1561 atttttcaat tcactaataa aagttgtttt ataataaaac tgttatgcaa gtattttcta
     1621 ggtcaatctg acttgtataa ttcattagat attataacaa cattcataaa tttgctttta
     1681 ttaggttttt aataattatt aacatgcctg taatacaaat aacaatgagt gaaggtagaa
     1741 ctcttgagca aaagagagaa ttagtaaagg ttttgactag ggaaacagct cgcattttaa
     1801 attcaaaaga ggaaaatatg agaattttaa tttatgaagt ttctaaagaa aattggggag
     1861 atgctggaat attgggagta gacatgaagt aattagaatt aatgcgaatt aagataataa
     1921 ttataattaa ataatagtaa aaatatttga atcgattttg catattttta tctataatag
     1981 tcacaaacat ccttaacaat tattttcaaa aattataaat agaatttaac ttgatacata
     2041 acattattat gaat
//
LOCUS       DATCMF010000091         1768 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_342622, whole genome shotgun sequence.
ACCESSION   DATCMF010000091 DATCMF010000000
VERSION     DATCMF010000091.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1768)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1768)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1768
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_342622"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..837
                     /locus_tag="VIL14_01130"
     CDS             <1..837
                     /locus_tag="VIL14_01130"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY8522341.1"
                     /translation="DSRYAVNQELSKQQLPPFSYKISMDYGVLNLALVGDYSQVDLFG
                     STINFCSKINSSSLSAHNEIIIGDKFYRILNSFSNIATTYNFINHGECKITETFGYST
                     YGIKKVNKSSIDEDDNNSNTSPLRKKILGSATHHLIETQSKKDLSFHIHNKNNNKQRV
                     ILVDDEKDILFTYESFLKHNGYEIITFTDSSNALNYIKDLSNFDNLLVTLDIRMKDLN
                     GFQLHQQIKSIDPTINILFITALDILDELLIIVPGLSKEQIMRKPIDKKEFTNTVKKL
                     LK"
     gene            complement(1083..1448)
                     /locus_tag="VIL14_01135"
     CDS             complement(1083..1448)
                     /locus_tag="VIL14_01135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522342.1"
                     /translation="MNRNLLIAGIFGFLVSAAIAEIYAIYSPNEVFTSTITVLVGFII
                     YKTAFVVLFHINNKQKYTNRFTSQINFNQLKKIIKKMIFAWSIFDIVNNLSRWIILYE
                     LLIMGFRPFDIAILSSIAA"
BASE COUNT          691 a          225 c          196 g          656 t
ORIGIN      
        1 gattcccgct atgctgtaaa tcaagaatta tcaaagcaac aattaccacc attcagctat
       61 aaaattagta tggactatgg tgtactaaat ttagctttgg tcggggatta tagtcaagtt
      121 gatttatttg gctcaactat aaacttttgt tcaaaaataa attcctcttc tttatctgca
      181 cataatgaaa taattattgg agataaattt tatagaattt taaattcttt ttccaatatt
      241 gctactactt ataattttat aaatcacggt gaatgtaaga taactgaaac ttttggatat
      301 tctacatatg gcataaaaaa agttaacaaa tcatcaattg atgaagatga taataatagt
      361 aatacatctc ctctaagaaa gaaaatatta ggttccgcta ctcaccatct tatagaaact
      421 caaagtaaaa aagacttatc ttttcatatt cataataaaa acaacaacaa acaaagagta
      481 attttagtag atgatgagaa agatattctt tttacttatg aatcattttt aaaacataat
      541 ggttatgaga taattacttt tacagactcc tctaatgcac tcaattacat caaagacctt
      601 tcaaattttg ataatttact tgtgacactt gatattcgaa tgaaagattt gaatggtttt
      661 caattacatc aacaaataaa atcaatagac ccaacaatca atattctatt tataaccgct
      721 ttagatatat tggatgaatt attaattata gttcctggtt tatccaaaga acaaattatg
      781 agaaaaccta ttgataaaaa ggagtttaca aatactgtaa aaaaactgtt aaagtaataa
      841 aatagattta agtgttagaa caaaatattt tgaaaataag tttctaataa taaaagctaa
      901 atataagata ccagcacata taatctggac ccctctttta gaaccgctat aggtattaca
      961 cccttgcgtg catatcttca tattaagtat ttttttcatt tttaaacatc tgtatttttt
     1021 gatggttagg aaaagatttt gatacgtttt aaaattatat tgattgataa ataagatata
     1081 gattaagcag ctatagaaga taatattgct atgtcaaaag gtctaaatcc cattattaat
     1141 aattcatata gtattatcca tcttgataga ttattaacaa tatcaaatat agaccatgca
     1201 aatatcatct tttttattat ttttttaagt tggttaaaat ttatttggct agtaaatcta
     1261 ttagtatatt tttgtttatt gttaatatga aaaagaacta caaaagctgt cttgtaaatt
     1321 ataaatccaa ctaatactgt tattgtagaa gtaaatacct cgttaggaga atatatcgca
     1381 tatatttcag ctatagcagc actcactaaa aatccaaaaa tacctgcaat aagtaaattc
     1441 ctattcatca aaatggtttc tctatatttc ttgaaaaaat tattaagaat tttattaata
     1501 attctggtat taataatatt atttttttta ttcaattaat aattagatat atacatacaa
     1561 ctctttatat ctttgaatag acaattccct aattaagaat aaactttttt ttcaaattat
     1621 ctaacatcta aattcttcat tttaggaatc aattgaatgc ataatatagt gagaaaatct
     1681 ataaaattat tttaaaatta tgaaataaaa gaaaaatttg ttttagcttc tattatatat
     1741 ataaattatt aattatcacc ttttattc
//
LOCUS       DATCMF010000092         2457 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_475036, whole genome shotgun sequence.
ACCESSION   DATCMF010000092 DATCMF010000000
VERSION     DATCMF010000092.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2457)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2457)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2457
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_475036"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            372..1073
                     /locus_tag="VIL14_01140"
     CDS             372..1073
                     /locus_tag="VIL14_01140"
                     /inference="COORDINATES: protein motif:HMM:TIGR02271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2382 domain-containing protein"
                     /protein_id="HEY8522343.1"
                     /translation="MSSNDFPWKETIKKEARGIDDADFGEIQSVDPEYVKTQKGIIDK
                     EFFSFPVNLVQDYDGNRVLFKVTEEEARNSYMLSQNVDDRDDFSDSEIETESITTNDH
                     DSLSNTKEEEEEEEVIPLMSEKLDVNKKELVDETVITKKPVKETKTVEVQLIREEIES
                     IERRPPSGVSEAQSPIESPEEIKIPLKREEPEVTKKPYVKEEVVVKKKVVTDKKEITE
                     DVTSEELDTSKIDKE"
     gene            complement(1328..2260)
                     /locus_tag="VIL14_01145"
     CDS             complement(1328..2260)
                     /locus_tag="VIL14_01145"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEY8522344.1"
                     /translation="MYFLSFFLINNIQAFGEDNEIQQQNATLALTDYNFIATGDWYCN
                     EETKKTINNILDVHPELIITTGDQVKESPSAACWIQMSKPIKDKMKIAIGNHDAEFAN
                     IYKQIVDYHQLKSPYYSHDLENVHFISMSTEHPYEKGSKQYEFIKSDLEKTSKNPDID
                     WIVVHQHKPLYSTKQDKKEAEQLRDIYEQLFQKSDVDLVISSHNQYYERTYPLLYNEN
                     YEKITNKKTDPQPIVTDHSQSEYPPTDGIVFLTVGTAGDKLDPVKEKHDFYVVQESQF
                     GFLNIEIENKGKTLVGEFHSNDGKVIDRFKLNET"
BASE COUNT          887 a          303 c          386 g          881 t
ORIGIN      
        1 aaagtaatca gttttttaat ttacttattt agaatcacta aaagattgga taactatatg
       61 gccaaaacat tcaatatata tagaataaga gatctgaaat ggtagtgagt ccttttgttc
      121 ggcaatgaac tttgattttt ctatattatc ttccagtgaa cagccttcag ttaaggatct
      181 tgaattctta tgtaactttc taacctagtg gagtttttta tagttgtagt atacaatttt
      241 aatgagatag gtattatcta ggaagataat acaatagaat ttgaagaatt ctatttgata
      301 atttttatta atttgaagat aacaataaaa ttcattgtaa ttattaaata atttattaaa
      361 taaaataatg tatgagttct aatgattttc cgtggaagga aactataaaa aaagaggcga
      421 gagggattga tgatgctgat tttggtgaga tccaaagtgt tgatccagaa tatgtaaaaa
      481 ctcaaaaggg tataattgat aaagaatttt tctcctttcc agtaaattta gttcaagatt
      541 atgatggtaa tagagtatta ttcaaagtaa ctgaagaaga agcaagaaat tcatatatgc
      601 tatctcaaaa tgtagatgat cgggatgatt ttagtgatag cgagatagaa acagaaagta
      661 ttaccactaa tgatcatgat tcattaagca atacaaaaga agaagaagaa gaagaagaag
      721 ttattccttt aatgtcagaa aaattagatg ttaataagaa agaacttgta gatgaaacag
      781 ttattactaa aaaaccagtc aaagaaacca aaacagtaga agttcaatta ataagagaag
      841 aaatagaaag tattgagcga agacctccca gtggagtctc agaagcacaa agtcctatag
      901 aatcaccaga ggagataaaa ataccattaa agagagaaga accagaagtt acaaaaaagc
      961 catatgtgaa agaagaagtt gtagtaaaaa agaaggttgt gactgataaa aaagagataa
     1021 cagaggatgt cacatctgaa gaattagata catccaaaat agataaagaa tagaaaaagt
     1081 tatctacagt cgaagactca tatttgctta gtaacattaa ctaaatcggt tccatttttt
     1141 tattaactaa ttatgtaatt tttattcata ttaataagtt aaatttctag caattgagta
     1201 agtttgtttc tataaattgg atattattat gtgaaattga taaacttgta gcaatcattt
     1261 aattttttat tttagtgcta tataaaaatt tattgtattt ttagctgaaa aagtttaaat
     1321 caatttatca agtctcattt aatttgaagc gatctattac ctttccatca ttggaatgaa
     1381 attccccaac taatgtcttg cctttattct caatttcaat atttaaaaat ccaaattgac
     1441 tttcctgaac aacataaaag tcatgttttt ctttaactgg atctaattta tctccagcag
     1501 ttcctactgt cagaaagact attccatctg taggtggata ttctgattgt gaatgatctg
     1561 taactattgg ctggggatct gtttttttat tagtaatttt ttcataattt tcattgtaca
     1621 agagaggata agttctttca taatattggt tatgacttga aattacaagg tcaacgtcag
     1681 atttttggaa aagttgttca tatatatctc taagttgttc tgcttctttt ttatcctgtt
     1741 ttgttgaata aagaggttta tgttgatgaa ctactatcca atctatatcc ggattttttg
     1801 atgttttttc taaatcactt ttaataaatt cgtactgttt gcttcctttc tcatagggat
     1861 gttccgtaga catactaata aagtgaacat tttccaagtc atgagaataa tatggactct
     1921 tcaattggtg atagtcaaca atctgtttgt aaatatttgc aaattcagca tcatgatttc
     1981 ctattgcaat tttcatttta tctttgattg gctttgacat ttgtatccaa caagcagcag
     2041 atggagattc cttcacctgg tctcctgttg taattattag ttctggatgt acatctagaa
     2101 tattatttat cgtttttttt gtttcttcgt tacagtacca atctcctgtt gctataaaat
     2161 tataatctgt taaagctaga gtagcgtttt gttgctggat ctcattatct tcaccaaaag
     2221 cctgtatatt gttaattaaa aaaaaagata aaaaatacag gtgttaaaat aataaaaaca
     2281 attgttaaaa aaggttgatt attatttttc caaatcattt taatcactta tactttaata
     2341 aatggcatag ggttgcaaat acaaataaaa attttgtcct tattctatat atcgaaactt
     2401 tctctaaata ataatgttta aaatctgatt tcataatggg aggatatagt tcgtgta
//
LOCUS       DATCMF010000093         3666 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_541307, whole genome shotgun sequence.
ACCESSION   DATCMF010000093 DATCMF010000000
VERSION     DATCMF010000093.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3666)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3666)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3666
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_541307"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            139..1212
                     /locus_tag="VIL14_01150"
     CDS             139..1212
                     /locus_tag="VIL14_01150"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEY8522345.1"
                     /translation="MDRWFESKLSQLGKLDYYKKPEKYRGLKLDANENLALKKDFIKK
                     IAIKAAEKEDLREYPLQQVDDFYLQLSKYTKIDKKYLAIGNGSDQIIDLILSVFGKEK
                     RVTTFTPTFSYFIDRCLLYSLKIDKIPLLQDNSIDNKKFIQSAKKSEIIYICSPNNPT
                     GNQFDKNLLIELIKNFDDKLIIIDEAYVEFASYSFCSETIKSQNIILLRTLSKAFGLA
                     GARLGYCIANEDFAHTFKTIIQYPYAINNISLNIGSEILKNSKYIEKTIKIIKKERKR
                     ILDSLKEINNEIKVFQTESNFIFFQIPDMNKYEHILTQLKKDNITVKTIGKIKDRKGG
                     HIRVTIGTKMMNNKFLRSLDKVI"
     gene            1222..2259
                     /locus_tag="VIL14_01155"
     CDS             1222..2259
                     /locus_tag="VIL14_01155"
                     /inference="COORDINATES: protein motif:HMM:NF012905.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IA family hydrolase"
                     /protein_id="HEY8522346.1"
                     /translation="MYQKLNNNNFILKMRRCFHIDYIIFDIDGVLIDVKKSYNEAIKN
                     TVQFIVKNLIKRDLKNFVTDKIILKFRQTGGFNNDADTSYAISLALLSHQDLENANLE
                     KFLIEVAEHADETGIESVERYLKKLRVNKISPSDYLINMDKIRSYLNYPGKVRDSIVS
                     TVFDEFFYGQELFLERYRIKSKYYFGKPLIENDRIVITDNTIRKLRERFNDKIAMVSG
                     RSKIAAAYALDNKFDLLNEKNSVFLEDENRKFAKPNPYGLKKIINKINTKNDILYCGD
                     SVEDLIMARRAEEELNQKNSNKTKTNIVFCGIYGCSSNTDELISKFMQKKADIIIKSV
                     NDLPYILNKVS"
     gene            2273..2890
                     /locus_tag="VIL14_01160"
     CDS             2273..2890
                     /locus_tag="VIL14_01160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazoleglycerol-phosphate dehydratase"
                     /protein_id="HEY8522347.1"
                     /translation="MNSEPLDLHNSQKRISVKDRCTKETDVSVSVNIDGSGNVEIKTG
                     IPFIDHLISAFGKHSMIDISLEAKSNDSISHHLIEDVAITLSQTLNDALSNRTQIRRY
                     GYAIIPMDEVMAISAIDLIKRQAHKVNLGLTRKEIEGIAREDLEHFIESLLQNLNACT
                     HINIQYGENDHHKIEAAIKSFAIAFRMASGIDYQRNGIPSTKGVM"
     gene            2893..3513
                     /gene="hisH"
                     /locus_tag="VIL14_01165"
     CDS             2893..3513
                     /gene="hisH"
                     /locus_tag="VIL14_01165"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HEY8522348.1"
                     /translation="MNDIAIFDFGAGNLYSLKCSLERNGATKVSVIKSLKNIHKHDGL
                     ILPGVGNFDPAIRSIQPYRRDFNNLFEKNFPILGICLGMEMLFNNSEEGKLEGLKILN
                     GRVIMLPIKKVKIPHMGWNNLEITDKTCKILHGLKDGCWVYFVHSYHVVTKDKKIIVA
                     NSQYGGTIPVVVEKNNLFGTQFHPEKSGINGAKIIKNFLTICGGKY"
     gene            3510..>3666
                     /locus_tag="VIL14_01170"
     CDS             3510..>3666
                     /locus_tag="VIL14_01170"
                     /inference="COORDINATES: protein motif:HMM:NF013168.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HisA/HisF-related TIM barrel protein"
                     /protein_id="HEY8522349.1"
                     /translation="MNIIPAIDILEGKVVRLVKGDLQNKIVYSDDPIEIARKMESQGA
                     NIIHIVDL"
BASE COUNT         1539 a          396 c          611 g         1120 t
ORIGIN      
        1 aaaaaggcgc ttagggaaat cgagccttat gtcaagataa taactgaaga agaaggattg
       61 gttaatcatt ataaagccgt taaagaaaga gtaatagacg accttccaaa tcaaaaaata
      121 gaagatgaga aatgaagtat ggatagatgg tttgaatcaa aattaagtca attaggaaaa
      181 ctagattatt ataaaaaacc tgaaaaatat agaggactaa aactagatgc aaacgaaaat
      241 cttgctttaa aaaaagactt tatcaaaaaa atcgctatca aagctgcaga aaaagaggat
      301 ttaagagaat atccattaca acaagttgat gacttttatt tacagctttc aaaatatact
      361 aaaatagata aaaaatattt agctattgga aatggctctg atcaaataat agatttaatc
      421 ctgtcagtct ttggaaaaga aaaaagagta actacattta ctcctacgtt ttcttatttt
      481 attgatagat gtttattata ttccttaaaa atagacaaaa tacctctttt acaagataat
      541 tcaattgata acaaaaagtt tattcaaagt gcaaaaaaat cggaaataat atacatatgt
      601 tcaccaaata atcctacggg taatcaattt gataagaatt tattaataga gttaattaaa
      661 aattttgatg ataaattaat aattatagat gaagcatatg tagagtttgc tagttattca
      721 ttttgttctg aaacaataaa aagtcagaat ataatactat taagaacatt atcaaaagca
      781 tttggattag caggagctag attgggctat tgtattgcta atgaagattt tgcacataca
      841 tttaaaacta ttatacaata tccttatgca ataaataata tttctttgaa tataggaagt
      901 gaaatattaa agaattcaaa atatattgag aaaactatta aaattataaa gaaagaacgt
      961 aaaagaatac tagattcgtt aaaagaaatt aataatgaaa taaaagtttt tcaaactgag
     1021 tctaatttca ttttttttca aatacctgac atgaataaat atgaacatat tttaactcaa
     1081 ttaaaaaaag acaatatcac agttaaaaca ataggaaaga taaaagatag aaaaggaggt
     1141 catattagag taactatcgg aacaaaaatg atgaataata aatttttaag atcattagat
     1201 aaggtgatat aaggtaatag aatgtatcaa aaattaaata ataataattt tattcttaaa
     1261 atgagaagat gtttccatat tgactatatt atttttgata ttgacggagt tttaattgac
     1321 gtaaaaaaat cttataatga ggcaataaaa aatacagtcc aatttatagt caaaaatctg
     1381 attaaaagag atttgaaaaa tttcgttaca gataagatca ttttgaaatt tagacagact
     1441 ggaggtttca acaatgatgc tgatacaagt tatgcaatta gtttagcact attatcacat
     1501 caagaccttg aaaatgctaa tcttgaaaaa tttctaattg aggtagcaga acatgctgat
     1561 gaaactggga tagaatctgt tgagagatat cttaaaaaat taagagttaa taaaatctct
     1621 ccttctgatt atttgataaa tatggataaa attcgtagtt atttgaacta tcctggaaaa
     1681 gttagagaca gtatagtttc tacggtattt gacgaatttt tttatggaca agaattattt
     1741 ttagaaagat atagaattaa atcaaaatat tattttggca aaccactcat agaaaatgat
     1801 agaatagtga ttacagataa tacaattaga aaattaagag aaagatttaa cgataaaatt
     1861 gcaatggttt caggaagaag taagattgca gcagcctatg ccctagataa taaatttgat
     1921 ttgttaaacg agaagaatag tgtatttcta gaggatgaga acagaaaatt cgctaaacca
     1981 aatccatatg gattaaaaaa aataataaat aaaattaaca caaaaaatga tattctctat
     2041 tgtggagact ctgttgaaga tctaataatg gctagaagag cagaagaaga attaaatcaa
     2101 aaaaactcta acaaaaccaa aactaatata gttttttgtg gaatatatgg ttgtagtagt
     2161 aatacagatg agttaattag taagtttatg cagaaaaaag cagatataat aattaaaagt
     2221 gtaaacgatt taccatatat attaaataaa gtatcataag gaatattgtt agttgaattc
     2281 ggaacctctt gacttgcata actctcagaa aagaatatca gtcaaagata gatgtacaaa
     2341 agagaccgat gtaagtgtga gtgttaatat tgacggctct gggaatgtgg aaattaaaac
     2401 tggaattcca tttatagatc atttaatctc agcatttgga aagcatagta tgatagatat
     2461 ttctttagaa gcaaaatcaa atgatagtat ttctcatcat ttaattgaag atgtggctat
     2521 aactctctct cagactctaa atgatgcgtt atcaaataga acgcaaatta gaagatatgg
     2581 atatgccata attccaatgg atgaagtaat ggcaatttca gcaattgatc taatcaaaag
     2641 acaagctcat aaagtaaatt taggattaac aagaaaggaa attgaaggta ttgcacgaga
     2701 agatttggaa cattttatag aaagtttatt acaaaatctg aatgcatgta ctcatattaa
     2761 tatacaatat ggcgaaaatg accaccataa aatagaggca gcaataaagt catttgcaat
     2821 agcatttaga atggcgtcag gtatagatta tcaaagaaat ggtattccaa gtacaaaagg
     2881 agtaatgtga gattgaatga tattgcaatt tttgattttg gtgcaggtaa tctttatagt
     2941 ttaaaatgct ctttggaaag aaatggagca acaaaagttt ctgtaattaa atctttaaaa
     3001 aacatccata agcatgatgg attaattctt ccaggagtag ggaattttga ccctgctatt
     3061 cgatcgatac aaccgtatag aagggatttt aataatctgt ttgaaaaaaa ttttcctata
     3121 cttggcattt gtctaggaat ggaaatgtta tttaataata gcgaagaggg aaaattagaa
     3181 ggtttgaaaa ttttaaatgg aagagtaatt atgcttccaa taaaaaaggt aaaaatcccg
     3241 catatgggat ggaataattt agaaataaca gataaaacat gtaaaatcct acatggctta
     3301 aaagatggat gttgggtcta ttttgttcat tcataccatg tcgtaacaaa agataaaaaa
     3361 ataatagttg cgaattctca atatgggggc acaataccag tagtagtgga gaaaaataat
     3421 ctttttggaa cacaatttca tcctgagaaa tcaggtataa atggagcgaa aataataaag
     3481 aacttcttga caatatgtgg tggtaaatat tgaatataat acctgcaatt gatatactag
     3541 aaggaaaggt ggtgagatta gttaaaggag atcttcaaaa taaaattgtt tatagtgatg
     3601 atcctataga aattgcaaga aaaatggaat cccaaggtgc aaatataatt catatagtag
     3661 atcttg
//
LOCUS       DATCMF010000094         2210 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_18167, whole genome shotgun sequence.
ACCESSION   DATCMF010000094 DATCMF010000000
VERSION     DATCMF010000094.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2210)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2210)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2210
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18167"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(77..204)
                     /locus_tag="VIL14_01175"
     tRNA            complement(join(77..121,143..149,172..204))
                     /locus_tag="VIL14_01175"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(144..146),aa:Leu,seq:cag)
     gene            complement(300..965)
                     /locus_tag="VIL14_01180"
     CDS             complement(300..965)
                     /locus_tag="VIL14_01180"
                     /inference="COORDINATES: protein motif:HMM:TIGR00323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-6"
                     /protein_id="HEY8522350.1"
                     /translation="MGIYKYAYYKSPNIGIFVKCNDQFIVLPLGFAPTKTTMLSKYLE
                     VTDNIYVSIADTRLLGPMMVMNNNGILVSSITSDEEINILKEKSQLNVERLKSKYTAI
                     GNLIATNDHGAIVSPLCNDVKAQIQDILGVSVISMTISGYIQTGAMIVATNKGAAAYP
                     NASDDEIKTISDILNVNVEPVTINGGIPFLASGIIANSKSVVVGNMTSGPELIMLSRA
                     FNV"
     gene            complement(1042..1485)
                     /locus_tag="VIL14_01185"
     CDS             complement(1042..1485)
                     /locus_tag="VIL14_01185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522351.1"
                     /translation="MLSISSICLFQSFSLENKNNIIKESYGVIQTFPMEIDYAHFISP
                     LNQDNQVKVLLKSLTTNDTSGLNNKTINAVMKIYSINGTLLKTSSYPQGFNYNSTESI
                     KLATNIADKSIETITAVIQLTNLEKTQPLSDPLTIKLGLGQVIDR"
     gene            complement(1647..1787)
                     /locus_tag="VIL14_01190"
     CDS             complement(1647..1787)
                     /locus_tag="VIL14_01190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522352.1"
                     /translation="MVEFTDMKGQELVDIKETEDKLELFFKNNKYIIQIVDGNFKITQ
                     TN"
BASE COUNT          776 a          312 c          283 g          839 t
ORIGIN      
        1 tttttaattt ttttataatt agagcattaa ataaaaaagg tttgtcaata atattaaaaa
       61 aattgagact tatagatgcg ggaggtggga tttgaaccca cgaactccta agagatgagg
      121 tatcttagtc aaatgctaaa cttctgagca tcgtgtcaga ttaaatctga tctcacgcct
      181 ttgaccatgc ttggcaactc ccgctttctt tctataatat aattcctgag tgaaataata
      241 aatttttcat ttaataatcc tttacaaaga taaatagaaa taattaacta ttaaattgcc
      301 taaacattaa aagctctact taacattatt aactctggac cactggtcat atttccaact
      361 acaactgact tagaattagc aataatacct gatgccagaa aagggattcc accattaatt
      421 gttactggtt caacattaac atttaatata tcagaaattg tcttaatttc atcatcagat
      481 gcattaggat aagctgcagc acccttattt gtggcaacta tcattgctcc tgtttgaata
      541 tatccagaaa tagtcataga gataactgat acccccaaaa tatcttgtat ttgagctttg
      601 acatcattac ataaaggtga cactatagcc ccatgatcgt ttgtagctat taaattacct
      661 attgcagtat acttactttt taagcgttca acatttaatt gacttttttc ttttaatata
      721 ttaatctctt cgtctgaggt aatggaagaa actaatatcc cattattatt cataaccatc
      781 attggcccta ataatcgtgt gtcagcaatt gaaacataaa tattatctgt aacttctaaa
      841 tattttgata acatagtagt ttttgttgga gcaaatccta atggaagtac tatgaactga
      901 tcattacatt tcacaaaaat tccaatattt ggacttttat aatatgcata tttgtaaatt
      961 cccaagatct aacaattatt ataaatatta atatgaactt attggaatat tataattcat
     1021 ataaaaaata gagaattaag ttcatctatc tataacttgt ccaagaccaa gtttgattgt
     1081 taatggatca gacaatggct gtgttttttc taaattagtc aattgtataa ctgctgtaat
     1141 tgtttcaata gatttatctg caatattagt cgcaagtttt atagattcag tactattata
     1201 attaaatccc tgtggataag aggatgtttt tagcaacgtt ccgttaatag agtatatttt
     1261 cattacagca ttaattgttt tattattcaa tccggaagta tcatttgtag tgagagattt
     1321 tagaagcact tttacctgat tatcttgatt taaaggagat ataaaatgag cataatctat
     1381 ctccataggg aacgtttgta taacaccata agattctttt attatattat ttttattctc
     1441 gagcgaaaat gattgaaaaa gacaaattga tgaaatagat aacaatataa aaaatacaat
     1501 aaaattttta ttgaattgat ttagaatatt gaaattattc atagaccatt atttggatta
     1561 atatctttag aataacattg atgttaaatt aatttgacaa aatactatat gattacaata
     1621 gtgaaaataa gatttaaaaa ttcttattag tttgtttgtg ttattttaaa gttcccgtca
     1681 acaatttgaa taatatattt attattttta aaaaataatt caagtttgtc ttctgtttct
     1741 ttgatatcca caagttcttg acctttcata tcagtaaatt ctaccataag tttatgacga
     1801 gttactatta tttagattat ttgaattgtt aataataaca tgttcatgtc catcatgaat
     1861 gaataaatga atgaatgaag tagcacttca aataattttt taaatacctt tttttaattt
     1921 catattagtt catcattcct caccatcacg tatccaaata agtatttctg tttgttctgt
     1981 tgttagacta tagtaggcta tatgtaataa gccaagaaaa actcaaataa aatataacct
     2041 tctattatta ttgatttgct ctttatcaga gtactatggt ttttacttgt atcaaattaa
     2101 aattttctaa taataccaac cttgataaaa aagggcctta ctataatggg tattaagtcc
     2161 tatttctttg gatacttagc ctctaattct tttaatatct tttaatatta
//
LOCUS       DATCMF010000095         2541 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_18252, whole genome shotgun sequence.
ACCESSION   DATCMF010000095 DATCMF010000000
VERSION     DATCMF010000095.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2541)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2541)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2541
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18252"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            327..1880
                     /locus_tag="VIL14_01195"
     CDS             327..1880
                     /locus_tag="VIL14_01195"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY8522353.1"
                     /translation="MREEKKRGRKRIEKHRTTKTAVIYSRSARFLLILLSSTLLVIMF
                     SETMLLPAIPEIMQDFNIPYSTAAWIFSAYLIVAAVMTPIAGKLSDIYGNKKILLILL
                     ILYVVGVVAGGFSENISFLLASRIIQGVGLAAVPVAFSIIRDSFPPEKLSMPVGVFSS
                     AASGGSVVGLLIGASIIQNFGWHATFLFIAPAAMIVTFMIARFVPTDDKFKQQQQEHL
                     QPSVNDNNSDEKNVINRSKSVIDIKGAIALSATITSFLIALTFIENSNSLENSIGIAG
                     ISFIVSAASLILFIFIEKRTKMPLIDLWLIKQRILLPTYVMMIVTGTTIFLVYPTIVQ
                     LVRSPQPAGFGGDAVYAAYVQLPFMLVFLLFSSATSYIISKLGKIMPTVLGSAISIAG
                     EVGLLMLHSTGLLVSINLTIIAIGLALTMTAIWNLIVSSAPREFMGISTAIGALLSFI
                     GMAIGPALAGTYMHTFYISIEGIVGLYPSPESFNMIFFTAAALSAVSLTFSLLLKRRT
                     SMYKNIFHK"
BASE COUNT          859 a          414 c          409 g          859 t
ORIGIN      
        1 tttttaatta ttctaaaagt ttaacaatct gaaatttaaa tttgttctac ccgatcccaa
       61 ttacaggaaa tactcaaagt gctctagtca tttcaatagt tagaattcct gaacatcttc
      121 taaactacaa aaaatatcta cataaacaaa ttgtttaaat atattgacta aaaagttact
      181 cattataata gagatctaat gttaaaactg taaaacttaa taggaaaaat acttttttac
      241 taaggtattg aaaatcatta actaaaataa ttcatataat ttttaacctt ctgaatttat
      301 atattcttaa aattaaagtt tctgaaatga gagaggaaaa gaaacgggga agaaaaagga
      361 tagaaaaaca cagaacaaca aaaacagcag taatctatag tcgttcagct cgattccttc
      421 tcattttact tagcagtact cttttggtaa taatgttctc cgaaactatg ttactaccgg
      481 ctattcctga gattatgcaa gattttaaca taccatatag cactgcagcc tggatattca
      541 gtgcatatct cattgtagct gcagttatga caccaattgc aggcaagctt tcagatatct
      601 atggaaacaa gaaaatactg cttatcttgc ttatattgta tgtagtaggt gttgtagcag
      661 gaggattttc tgaaaacata tcttttcttc tcgcgagccg gataattcag ggtgtaggct
      721 tagcagcagt tcctgtagct tttagtatta tcagagattc ttttcctcct gagaaacttt
      781 ctatgccagt aggagtcttc agctcagcag cttcaggtgg atctgtagta gggctactaa
      841 taggtgccag tataatccag aattttggat ggcatgctac attcctcttt atagctccag
      901 cagcaatgat tgtaactttt atgattgctc gatttgttcc tactgatgat aagtttaagc
      961 agcaacaaca ggaacatcta cagccatctg taaatgataa caatagtgat gaaaaaaatg
     1021 tcattaatcg tagtaagtct gtgatagata ttaagggcgc aatagcactt tcagcgacga
     1081 taacatcttt tttgattgca cttacattca tagaaaatag taactcatta gaaaattcga
     1141 taggaattgc aggaatttct tttatcgtat cagcagcttc tttgattctc tttatcttta
     1201 tagaaaaaag gacaaagatg ccattgattg atttgtggct gataaaacaa agaatcttgt
     1261 tgccaaccta tgttatgatg atagttactg ggaccacaat atttttggtt tatcctacga
     1321 tagtacaatt agtaagaagc cctcaaccgg caggttttgg gggagatgct gtatatgcgg
     1381 cttacgtcca gcttccgttt atgctagtat tcttactatt ttctagtgca acatcctaca
     1441 ttatatctaa attaggaaaa ataatgccga cggtgttagg aagtgcaatc agcattgcag
     1501 gagaggttgg tctgttgatg ctgcactcta caggactctt ggtatctata aatcttacaa
     1561 taattgcgat tggactagca ctgacaatga ctgcaatttg gaacttgatc gtttcttctg
     1621 ctccaaggga gtttatggga atttcgacag caataggagc cctactttca ttcattggaa
     1681 tggccatagg tcctgccttg gcaggaacct acatgcatac tttctatata tctatagagg
     1741 gtattgttgg tttatatcct tctccagaat cgttcaatat gatcttcttt acagctgctg
     1801 cgctgtcagc tgtgtcattg actttttctt tattgttaaa gagaagaacg tcaatgtaca
     1861 agaatatatt ccataaataa gccacaaata tgttaagata atattattca aaacaagcac
     1921 caatttcttt tgattttatc ttcttttaat gtaaatttta tttggaacaa gagaacgaat
     1981 catttgatct tttatacaaa aaaataattg ttagattaaa atagagaggt attttataaa
     2041 tacatgaaaa acttaagatt gcatacaaca atagaattta gtccaaaata tattattctt
     2101 tttagataat tgttggatca cttcttctag caataatctc ttcaatccta aagttaaata
     2161 atgcaacaag aaagacagca attaaaataa tattaataat gttacataac ttgtgaccat
     2221 tatttagatt tatttagcaa agataaatat attttataat atatcatata ttgattcata
     2281 ttttttcttg aattatcaca tttttgctag ctctgcttta aacctataaa tggctataat
     2341 gtgacatact aaactgattt gcataacctg tacaaaatct actagtatca ttaatcaaga
     2401 ctaacttggc attcatgaaa ttcatacgca cagaaaatca tttaacttca tttctacaaa
     2461 gtaatatatg gttgtaacaa aggttagcaa ggaaatttct ctaaccgaat acccatatgg
     2521 aatgcccaca gaaaataatt t
//
LOCUS       DATCMF010000096         1689 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_18341, whole genome shotgun sequence.
ACCESSION   DATCMF010000096 DATCMF010000000
VERSION     DATCMF010000096.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1689)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1689)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1689
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18341"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..572)
                     /gene="cbiB"
                     /locus_tag="VIL14_01200"
     CDS             complement(<1..572)
                     /gene="cbiB"
                     /locus_tag="VIL14_01200"
                     /inference="COORDINATES: protein motif:HMM:TIGR00380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016880 - acid-ammonia (or amide) ligase
                     activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylcobinamide-phosphate synthase CbiB"
                     /protein_id="HEY8522354.1"
                     /translation="MISSFHFITILVISIVLDLILGDPNNKIHPVSWLGKYINYFVPK
                     IKDEKNEKNEKRNGVIFTTITIAFFAVIIQLSLLYLYHTTFILMMLFSIFILYSVIAI
                     KGMEKHINAITTALQNNDIENARANLSMIVSRNTKNLDEQHILSGTIESIADSIVDGI
                     LSPIFYFSLFGPTGAFIFRVINTLDSMIGY"
     gene            complement(572..1438)
                     /locus_tag="VIL14_01205"
     CDS             complement(572..1438)
                     /locus_tag="VIL14_01205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cobyric acid synthase"
                     /protein_id="HEY8522355.1"
                     /translation="MNAKVVMVQGTSSGAGKSTIVIALCRIFSNMGYKVSPFKAQNMS
                     SKIHIISNVHRISKIQAIQAFAARKELEWQINPILLVPLGNNKSNVFVAGKFLEEMSA
                     IKYYQEFVLAKGFPIVLDAVNKLKNENDIIIIEGAGSPAEINIAKYDIANMLLAEAIN
                     SRVILVSDIERGGCFASIFGTIKLLKIKHQRLIKGFIINKFRGDENILEEGIRFIEYR
                     TKVNNIGIIPKFEFFLPPEDSLDGTNNNNLKNLKKFSSKKKMNEQIDLLAATIGSRIN
                     VDFILQHVLKIG"
     gene            complement(1471..>1689)
                     /locus_tag="VIL14_01210"
     CDS             complement(1471..>1689)
                     /locus_tag="VIL14_01210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522356.1"
                     /translation="FLIKLKNINSITYQKILLNFHGIYVRDCSSFRGMSSDFIRVAVR
                     THKDNLILLKAIYDINNHLNKSKRFKNK"
BASE COUNT          579 a          269 c          216 g          625 t
ORIGIN      
        1 ttataaccaa tcatggaatc taatgtattg attactcgaa aaataaaagc accggtcgga
       61 ccgaaaagag aaaaataaaa tatgggggat agaattccat ctacaatact gtcagcaatc
      121 gattctattg ttcctgataa aatatgttgt tcatctaggt ttttagtatt tctgctcaca
      181 atcatggaca aatttgccct cgcattttca atatcattat tttgtaaagc tgtagtaatt
      241 gcattgatat gtttttccat accttttatt gctattacag aatataagat gaaaattgaa
      301 aaaagcatca ttaagataaa agtggtatga tagagataaa gtagagatag ttgtattatc
      361 accgcaaaaa acgcaatagt tatagtagta aatattaccc catttctttt ttcatttttt
      421 tcattttttt catctttaat cttaggaaca aaataattga tgtattttcc tagccatgaa
      481 acaggatgaa ttttattatt cggatctcct aatatcaaat ctaaaactat tgatatcacc
      541 agaatagtga taaagtgaaa ggaggatatc attatcctat ttttagaaca tgctgcaaga
      601 taaaatcaac atttattcta cttccaatag ttgcagctaa taaatctatt tgttcattca
      661 tttttttttt tgaactaaat ttttttaaat ttttcagatt attattattt gtcccatcta
      721 gagaatcttc tggtggtaaa aaaaattcaa atttgggaat tatacctata ttgttcactt
      781 tagttctgta ttcaataaat cggatcccct cttcaagtat attctcatca ccacgaaatt
      841 tattaataat gaaacctttg attagtcgtt gatgttttat ttttaacaat ttaattgttc
      901 caaatatact agcaaaacaa ccacctcgct caatatcaga tactaatatg acacgagaat
      961 taattgcttc agcaagtaac atattagcta tatcatattt cgcaatatta atttcagcag
     1021 gagaacctgc tccttcaatt attatgatgt cattttcatt tttcaactta ttcacagcgt
     1081 ccaatacaat gggaaaacct ttagccaaaa caaattcttg ataatattta attgcggaca
     1141 tttcttctaa aaattttcct gctacaaaaa cattgctttt attatttcct aaaggaacta
     1201 ggagaatagg atttatctgc cattcaagtt cttttctggc tgcaaatgct tgtatagcct
     1261 ggatcttaga tatcctgtgg acatttgaaa taatatgtat tttggaagac atattttgag
     1321 ccttaaaagg agagacttta taccccatat tagaaaaaat tctacataat gctatcacaa
     1381 tagtgctttt gcctgctcct gaagaagtgc cttgaaccat cactacttta gcattcatta
     1441 aaaattcttc ctactccttc tcatttagaa ttatttattc ttaaacctct tagatttatt
     1501 taaatgatta ttaatatcat aaattgcttt taacaatatt agattgtcct tatgagttct
     1561 tacagctact ctgataaaat cagaggacat tcctctaaaa ctagaacagt ctctcacata
     1621 aatgccatga aaatttaaca atattttttg gtaagtgata gaattgatat tttttaattt
     1681 tattaaaaa
//
LOCUS       DATCMF010000097         2428 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_18680, whole genome shotgun sequence.
ACCESSION   DATCMF010000097 DATCMF010000000
VERSION     DATCMF010000097.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2428)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2428)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2428
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18680"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..293
                     /locus_tag="VIL14_01215"
     CDS             <1..293
                     /locus_tag="VIL14_01215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ferredoxin--NADP reductase"
                     /protein_id="HEY8522357.1"
                     /translation="FKYRASISRPHEPFNRSWGGQKGRVESFLRPEPGSDTSTLEQIV
                     GERITPENTSFYVCGWQGTVDGVLDFLKPKGFVDERHKRKDGSYEIKFESYG"
     gene            317..655
                     /locus_tag="VIL14_01220"
     CDS             317..655
                     /locus_tag="VIL14_01220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522358.1"
                     /translation="MKFEYEEFSSIEDLFLYMASIAPYMKQLLPITYYKGYLFSIVPI
                     SQLSTEILMMVYVKTEMSTGLFEFDISTGKYKKIQSIERADKNYFIIITPKSASLADK
                     AIANLKINDQ"
     gene            complement(681..2258)
                     /locus_tag="VIL14_01225"
     CDS             complement(681..2258)
                     /locus_tag="VIL14_01225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEY8522359.1"
                     /translation="MTTSGKRIVLTADRSLMTNYRGNFLYGFIACGPYELVPEFVFDK
                     LFCPSVETDKHSGEVKVAQCGLRRIEGALLQEYNRSEIFLSHPEMLNKCIGPDTKVVG
                     INVMDPLGMAPVTTTMSPEKLSYVAMKFKKMCASIIQLKKRYNFKVVVGGNGAWELAK
                     PDRMKIHGIDTVVIGEADELALDLFHDLEQGDAPELLHTFVRNIENIPPIQGPTINSL
                     IEAMRGCGRGCDFCDVNKRSKKDIPLSRLTEEAKINLKYGFDSIWLQSDEMLLYGCDN
                     KDFFPNADAIIDVWSGLKNVGANFVGTTHMTLSAVASSPNLIKKLSQINDMENSGRWL
                     ATNLGVETVAPRMVKKHLGVKTKPFQPEEWGSVVREGCKILNNNHWFPALTLIIGWPD
                     ETPDETQYTIDLIEDFKHMKMRGLVAPLLYQDFSEKNSMHFGNLNEAQFTLFWKCWQH
                     NLRVINDIIPIIIRNKSYGPPMKLFMASLIKVGTWAIMRYLRGLSKDLFDGKLPEDII
                     QHYSRNRSVTTPLPSKL"
BASE COUNT          795 a          446 c          380 g          807 t
ORIGIN      
        1 attttaaata tagagccagt atcagcagac cacacgaacc attcaatagg tcatggggag
       61 gccagaaggg tagagttgaa tcatttttaa gaccagaacc aggaagcgat acatcaactt
      121 tagaacaaat tgttggagaa agaataactc ctgaaaatac ttcattttat gtctgtggat
      181 ggcaaggtac ggtagatggt gtcctagatt tcttaaagcc gaaaggattt gttgatgaaa
      241 gacataaaag aaaagatggc agttatgaga tcaaattcga gtcctatgga taattcaact
      301 tatcatgtga tatattatga aatttgaata tgaagagttt tcatctatag aagatttgtt
      361 tctttatatg gcatctatag ccccatacat gaaacaatta ttaccaataa catattacaa
      421 aggttatctt ttctctattg tcccaatctc acaactttct actgagatct taatgatggt
      481 ttatgtgaaa acggaaatgt ccacaggctt atttgaattc gatatttcaa ctggcaaata
      541 taaaaaaatc caatccatcg aacgtgcaga taaaaattat tttataatca ttactccaaa
      601 atcagccagc ttggcagata aagcgattgc aaatttgaaa attaatgatc agtaaataaa
      661 tgaagtataa cagtactatg ttatagctta gatggtaatg gagtcgttac cgaacgattt
      721 ctagagtaat gttgtataat atcttctggt aatttaccat caaataggtc cttagaaaga
      781 cctctaagat atctcattat tgcccatgtg cctactttaa ttaaactggc cataaataac
      841 ttcataggtg gtccataact tttatttctg attataattg gtataatatc attaatgaca
      901 cgaagattat gttgccaaca cttccagaaa agagtaaatt gagcttcatt taaattacca
      961 aaatgcattg agtttttctc tgaaaaatcc tgatagagta atggagctac taatcctcgc
     1021 attttcatat gtttaaaatc ttcaattaaa tctatagtat attgagtttc gtctggtgtt
     1081 tcatcaggcc agccaatgat aagagttaaa gcaggaaacc aatgattatt atttaaaatt
     1141 ttacaacctt ccctaacaac ggaaccccat tcttcaggtt gaaatggttt ggttttaacg
     1201 cctaagtgtt ttttgaccat tcttggagca actgtttcaa ctcctaggtt agtggctaac
     1261 catcttccac tattttccat atcatttatt tgggaaagtt tttttatcaa attaggtgat
     1321 gatgcaacag cagaaagcgt catatgagta gtgccgacaa aatttgctcc tacgttcttt
     1381 aacccactcc agacatctat aatggcatca gcattgggaa aaaaatcttt attatcacaa
     1441 ccatacaata acatttcatc cgattgaagc catattgaat caaatccata cttaaggtta
     1501 atttttgctt cctctgttaa tctagaaagg ggaatatcct tttttgacct tttattgaca
     1561 tcacaaaaat cacaaccacg tccgcatcct ctcattgctt caattaaaga atttattgta
     1621 ggaccttgga tgggaggaat attttcaata tttcgtacaa atgtatgtaa tagctctgga
     1681 gcatcacctt gttctaggtc atgaaataaa tccaaagcta actcatctgc ttctccgatc
     1741 actactgtat caatgccatg aattttcatt ctatcgggtt ttgctagttc ccaagcacca
     1801 ttacctccta ctacaacttt gaagttgtac cttttcttta actggataat tgaagcgcac
     1861 atttttttga acttcatagc gacgtaagat aatttttccg gcgacatcgt cgttgtaaca
     1921 ggagccatac ctaaagggtc cattacattt attccgacga ctttagtgtc tggtccaatg
     1981 cacttgttta acatttccgg atgggaaaga aaaatttcac ttctattata ctcttgaagt
     2041 aaagcacctt ctattcttct caatccacat tgagctactt tcacttctcc tgaatgttta
     2101 tctgtttcta cactaggaca aaaaagttta tcaaaaacaa attctggaac caactcataa
     2161 ggcccacatg ctataaaacc ataaagaaaa ttcccacgat aattagtcat tagacttcgg
     2221 tctgccgtta aaactatcct tttaccagaa gtagtcatta caatatcctc tcaagtcatc
     2281 ctctgagaat cagatataaa tttattatca taaacttact atgagtgagt gttggaatat
     2341 tcaataaaat cctttttcat gcccttctat cataattgat ttcaattgct ttctattgag
     2401 atatgttaat gattctgaaa atgttgtc
//
LOCUS       DATCMF010000098         1841 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_409304, whole genome shotgun sequence.
ACCESSION   DATCMF010000098 DATCMF010000000
VERSION     DATCMF010000098.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1841)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1841)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1841
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_409304"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..503)
                     /locus_tag="VIL14_01230"
     CDS             complement(<1..503)
                     /locus_tag="VIL14_01230"
                     /inference="COORDINATES: protein motif:HMM:NF014610.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522360.1"
                     /translation="MASSLPSKKNQVKKDIDDADNHSDYNNNNNNNNIKKKKHTPKAV
                     ALLSGGLDSNLAVRMMQEQGVEVEAIAVKTPFCDFDCGKGCGHRVKEVAIELGINLKT
                     VYFGEEYLKMLKDPKYGYGSGMNPCIDCRGMMYNAAKEHMEKIGADFIVTGEVLGQRP
                     MSQNGNA"
     gene            588..737
                     /locus_tag="VIL14_01235"
     CDS             588..737
                     /locus_tag="VIL14_01235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522361.1"
                     /translation="MVFESIPNFDQYVVVAVGLFIVGLFSVMVYEKSNSSSSNKQEKQ
                     SSETR"
     gene            676..>1841
                     /locus_tag="VIL14_01240"
     CDS             676..>1841
                     /locus_tag="VIL14_01240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEY8522362.1"
                     /translation="MKSQIHHHQINKRNNRQKLDNSIYFTSLRSEDLEEVVITQFTKF
                     GFPILTNIQNLSLKVIVRDYDSLLVAPTGSGKTEAAIVPIIKLISINKKENGIKAIYV
                     TPLRALNNDVLRRIVQYAEAENLTIEIRHGDTSAKNKKKITENPPDILITTPESLSVL
                     LTISNIIKALQALKWVVIDEVHELVSNERGSHLSLSIERLQSLSNHKVTRVGLSATLG
                     NLKEAGSFVAGSERKCAILHDKSMREYDLDVKYIQGTINDVSQFIIDYIHSNKITGSV
                     LLFTNTRDEAEYFGTILKNQKEIDIDVHHGSLSREIREDTESKLRTGVAGIVVCTSSL
                     ELGLDIGAVDLVIHYGSPRQVSKLMQRIGRSRHQKRRSAKGLIVTNIPDDEIEA"
BASE COUNT          644 a          298 c          301 g          598 t
ORIGIN      
        1 aaagcattgc cattttgact cataggtctt tggcctaaca cttctccagt tacaataaaa
       61 tctgccccta ttttttccat atgttctttt gcagcattat acatcatacc tctgcaatct
      121 atacatgggt tcattccaga accataacca tactttggat cttttagcat tttcaaatat
      181 tcctccccga aataaactgt ctttaaattt attcccagct caattgctac ctctttcaca
      241 cgatgtccac aacctttacc acagtcaaaa tcacagaagg gtgtctttac agctatagct
      301 tcgacttcga caccttgttc ttgcatcatt cttactgcta aattactgtc aagtcctcca
      361 gatagaagag caacagcctt tggtgtatgt ttttttttct taatattatt attattatta
      421 ttattattat aatctgaatg attatcagca tcatcaatat ctttttttac ttgatttttt
      481 tttgatggta gactactcgc cattgcagta atgtcttata caacttggaa gctctattta
      541 ttgctaagtc aaataatata tattaatagc aaacaccatt gatagatatg gtatttgaat
      601 caatccctaa ttttgatcaa tatgtggtag tagctgttgg gttgtttatt gtaggattat
      661 tttcggtaat ggtatatgaa aagtcaaatt catcatcatc aaataaacaa gagaaacaat
      721 cgtcagaaac tcgataatag tatttatttt acatctttaa gatccgaaga tcttgaagaa
      781 gtagtaataa ctcagttcac taaatttggc tttccaatcc taacaaatat tcaaaacctt
      841 agtttaaaag taatagtaag agactatgat tctttactag ttgcacccac tggatccgga
      901 aaaactgaag cggcaattgt acctataata aaactaattt caattaataa aaaagagaat
      961 ggcattaaag ctatttatgt aactccatta agggcattaa ataatgatgt actacgaaga
     1021 atagttcagt atgccgaagc tgaaaattta actattgaga ttagacatgg agatacctct
     1081 gcaaaaaaca aaaagaaaat aaccgaaaat ccaccggata ttcttataac tacccctgaa
     1141 tcactttcag ttcttttgac aatttcaaat ataatcaaag ctttgcaagc tttaaaatgg
     1201 gtagtaattg atgaagttca tgaattagtg tctaacgaaa gaggatcaca tctatctctt
     1261 tctatagagc gattacagtc attatcaaat cacaaagtta caagagtagg attatcagcc
     1321 acattgggaa atcttaagga agcaggaagt tttgtagcag gatctgaaag aaaatgtgct
     1381 attttgcatg ataaatcaat gagagagtat gacttggatg taaaatacat acaaggaacg
     1441 attaatgatg tatcacaatt tataatcgat tatatacact cgaataaaat aactggttct
     1501 gttctattat ttacaaatac aagagatgaa gcagaatatt ttggaactat tttgaaaaat
     1561 caaaaagaga ttgatattga tgttcatcat ggatccttgt caagagaaat acgtgaagat
     1621 acagaatcaa agttaagaac tggagtagca ggtattgttg tatgcacatc atcattggag
     1681 ttgggcttgg atattggggc ggtggatctt gtaatacatt atggttcccc aagacaggtt
     1741 tcaaaattga tgcaaagaat tggaagaagc agacatcaga aaagaagatc tgcaaagggg
     1801 ttaatagtta cgaatattcc agatgatgaa attgaagcat a
//
LOCUS       DATCMF010000099         2625 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_343898, whole genome shotgun sequence.
ACCESSION   DATCMF010000099 DATCMF010000000
VERSION     DATCMF010000099.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2625)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2625)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2625
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_343898"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            38..187
                     /locus_tag="VIL14_01245"
     CDS             38..187
                     /locus_tag="VIL14_01245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522363.1"
                     /translation="MYNNNNNNNKRDFVNAQQKKFYLISRAFKIGNILATIILISIIG
                     KYFLG"
     gene            196..522
                     /locus_tag="VIL14_01250"
     CDS             196..522
                     /locus_tag="VIL14_01250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522364.1"
                     /translation="MSNTQEEYLHSLKRIKEVEDKVQLEIETHRKLIEEKINSLQNDL
                     ENSIAASKLQGETLVEKSIEEGRFNASKEADKIMGEAEKRSQTISIQLDQQTIKKIIE
                     IFLSGM"
     gene            539..2563
                     /locus_tag="VIL14_01255"
     CDS             539..2563
                     /locus_tag="VIL14_01255"
                     /inference="COORDINATES: protein motif:HMM:NF013647.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="V-type ATP synthase subunit I"
                     /protein_id="HEY8522365.1"
                     /translation="MSTILKPAPMVKIAVIGLKKYRPQIISIIHEMNVIQLEPLSKEA
                     DSFLMKEQESDLHRHISDQLLRIRGLINSLPPSPVSEKSKFSSIRELIETLKSMDIDK
                     NIASLERQKEAILTQIKETENNLKLLEEFSFFPEDFKLLHLSFARSYFGRVNLEKFPE
                     FKKTLESNEGPIILYSQAKDNLLYFVLVLPPNFPSNILATAVSLYGVHLETVPKLEGK
                     IVYINVLQKNLHEDLNAKLKLINNQLIEISKSNYTFLKGAEEELEIENQKLEVIEDLG
                     VTNDAFALEGWIPRSKIENLKTAFERYSKGTILYELETKDKPPTLLANPKRFKVFESF
                     VRFYSLPSGNEFDPTLIFGLIFPIFYGLMIGDVGYGLFILLVSLWVIRRVQDRKRNLT
                     IMPKFLRNFAKTILRPSQMVKLAKAMIPGCIIAIILGFCFDLYFGFHLNAYLFSYLNN
                     FGLNLPPDGALLNPIGTFGLRKLLLISGYVGLGMVSFGLILGILNSMRERQIKHIISK
                     VGWLLFGWGIALVGLAMINHVNINPLQNIQGAGYFALLLGGIGMMFYGEGVRALMELP
                     SIISHILSYTRIVGILLASVILAHVIDFIFLKSLDNSIAFSILGIMIFLIGHTFNIII
                     GVFEPGIQGARLIYVEFFSKFYHGAGRAFKPFGSKRRFTINEYNIKMFKK"
BASE COUNT          923 a          387 c          459 g          856 t
ORIGIN      
        1 gaacatgaaa ttacgaagga ggccgaagta gagattaatg tataataata ataataataa
       61 taataaaaga gattttgtaa atgcgcagca aaaaaaattt tatttaatat ctagagcatt
      121 caagattgga aacatacttg ctacaataat tttaatttca attataggaa aatattttct
      181 aggatgattt aatatatgtc taatacgcaa gaagagtatc tccattctct gaaacgaatc
      241 aaagaagttg aggataaagt ccaactagaa attgaaacac atagaaaatt aattgaagaa
      301 aaaattaata gtttgcagaa cgatctggaa aattcaattg ctgcatctaa acttcaggga
      361 gaaacattgg tagaaaaaag tatcgaagaa ggtcgtttta atgcttccaa agaagctgat
      421 aagattatgg gagaagcaga gaaaagatcc caaactatat ccatccaact agatcaacag
      481 acaataaaaa aaataataga gatttttctt tctggaatgt aatggaagcg atattaggat
      541 gagtacaata ctaaaaccgg ccccaatggt taaaatagca gttattggac taaaaaaata
      601 cagacctcaa attatatcta ttatacatga aatgaatgtc attcagttag aacctctttc
      661 aaaagaagca gattcatttt taatgaagga acaagaaagt gatttacata gacacatttc
      721 cgatcagtta ttgcgaatta gaggactaat taattctctt cctccttcac cagtatcaga
      781 aaaatctaaa ttttcttcaa ttagagaact tattgaaaca ctcaagtcga tggatattga
      841 taaaaatatt gcttcactag aacgacaaaa ggaagcaatc ttaacacaaa ttaaagagac
      901 agagaacaat ctaaagcttc tagaagaatt ttcattcttt ccagaggatt tcaaactttt
      961 gcatttatcc tttgctcgct cttattttgg tcgagttaat ttagaaaagt ttcccgagtt
     1021 taaaaaaaca ttggaatcaa atgaaggacc tattatctta tattctcagg ccaaagataa
     1081 cctcctatat tttgtgcttg ttcttcctcc aaatttccct tccaatattc ttgctacagc
     1141 agtcagttta tatggtgtac acttagaaac agttccaaaa ctagaaggaa aaatagtata
     1201 tattaacgtc cttcaaaaaa accttcacga agatcttaat gctaaattaa aactaataaa
     1261 taatcaattg attgaaattt caaagtcaaa ttataccttt ctgaaaggcg cagaagaaga
     1321 gttggaaata gaaaaccaaa agctcgaagt aattgaagat ctgggagtta ccaatgatgc
     1381 atttgcacta gaaggatgga taccacgatc aaagatcgaa aatctaaaaa cagcctttga
     1441 aagatatagc aagggaacca tcctttatga attagaaact aaagacaagc ctcccacact
     1501 tcttgcaaac cccaaaagat tcaaagtttt tgaatctttt gtaagattct actctttacc
     1561 atctggtaac gagtttgacc ctacattgat ttttggttta atttttccta tattttacgg
     1621 tttaatgatc ggtgatgttg gatatggctt gttcatactc cttgtctctt tatgggtaat
     1681 ccgaagagtg caggatagaa aacgtaactt gactattatg ccaaaatttt tacgtaattt
     1741 cgctaaaaca attttacgtc cttcccagat ggtaaagtta gctaaagcta tgattccagg
     1801 ttgtattatt gctattatat tgggattttg ttttgaccta tatttcggat ttcatctaaa
     1861 tgcatatctt ttttcatatt tgaataattt tgggttaaac ttgccacctg atggtgcatt
     1921 attgaatcct attggaactt ttggtttgcg taaacttttg ttaattagtg gatacgttgg
     1981 attgggtatg gtttcatttg gcctaatact tggaatactc aatagtatga gggagcgtca
     2041 gataaaacat ataattagca aagttggatg gctattgttt ggctggggaa ttgcgctggt
     2101 tggtttggcg atgataaatc atgtaaatat aaaccccctg cagaatattc aaggagctgg
     2161 ttattttgca ttactcttgg gaggtatagg aatgatgttt tatggtgaag gcgtcagagc
     2221 acttatggaa ttgccatcaa taattagtca catactttct tatactagaa ttgtaggaat
     2281 attgcttgca tcagttatac ttgcacatgt tatcgatttt atcttcctca aatctttaga
     2341 taattcaata gctttcagta tattaggaat tatgatcttt ttaataggtc acacttttaa
     2401 tattattatt ggagtttttg aacctggaat acagggagca aggctgattt atgttgaatt
     2461 tttttccaaa ttttatcatg gggccggtag agccttcaaa ccgtttggaa gcaaaaggag
     2521 gttcacaatt aatgagtata atattaagat gtttaagaaa taaaaagcct gtttgtaaga
     2581 atttttagat tatgcgatca gtatttagct gatttgttat gtgca
//
LOCUS       DATCMF010000100         2250 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_542071, whole genome shotgun sequence.
ACCESSION   DATCMF010000100 DATCMF010000000
VERSION     DATCMF010000100.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2250)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2250)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2250
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_542071"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            92..484
                     /locus_tag="VIL14_01260"
     CDS             92..484
                     /locus_tag="VIL14_01260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522366.1"
                     /translation="MYSTENNIDLEFNDLFNALIEKNLFTKKQISIIYKKFNTPVSTI
                     SKNGLSAGAYYRQIKQCRKKYDQLIYTLVLFRLLNFIDNSTIETIESIIKQLEKISQH
                     DIHHNSTVMIPNDIIIVIEKIISKINKI"
     gene            594..1208
                     /locus_tag="VIL14_01265"
     CDS             594..1208
                     /locus_tag="VIL14_01265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEY8522367.1"
                     /translation="MIGFLISYLLKGQNTIENNTVPVQRDNNIELIEIIENKKQLQID
                     NIALKVNDLQIHLDLLESKLVQLENRSTYEKTSNIGENITTTSDNTSQDPAFNDITHD
                     SISKILSTEKAKSKSSIFNEKHNATEHYILKLILKDSLTSNEIKQAIGRTREHTSRLM
                     KKLYELKLVERDITTKPFKYKLTEQGKKYIGDQVRNKEINQDIH"
     gene            1735..>2250
                     /locus_tag="VIL14_01270"
     CDS             1735..>2250
                     /locus_tag="VIL14_01270"
                     /inference="COORDINATES: protein motif:HMM:NF024589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY8522368.1"
                     /translation="MSDDILDNIFENAVKGKSLIKNRKILTIDYIPQKLQFRDEETTT
                     IAQTLSVSLKGARPSNLLLFGKPGTGKTAVVKNVINKFKEKSTELGVEVIVVFINAKI
                     ANTAYKVLYEIAEEMNINKTDKKNQVYFTGLSLGEATNRILDFIKKRQLHVIFVIDEI
                     DSLVDKNGDDIL"
BASE COUNT          929 a          272 c          309 g          740 t
ORIGIN      
        1 ttagggccta aagactagat aatatttata ctgctagtaa ttgtataaaa aatattctaa
       61 cctttttata agaatcttgt accatacaaa tatgtatagt accgagaaca atatagattt
      121 agaatttaac gatcttttta atgcacttat tgaaaaaaat ttatttacta agaaacaaat
      181 atcaataatt tataagaaat ttaatacccc tgtttctact atttctaaga atggattaag
      241 tgctggtgct tattatagac aaattaagca atgcagaaaa aaatatgatc aactgattta
      301 tacactagtt ctatttcgat tattaaattt tatagataac agtacaatag aaaccataga
      361 atcaataatt aagcaactag aaaaaatatc acaacatgat attcatcaca attcaactgt
      421 aatgattcct aatgacatca ttattgtgat agagaaaata atcagtaaga tcaataaaat
      481 ttgagataat cgcatattaa tagataaaaa taaatatttt gtgatgtatg tgatattatt
      541 tgaatataga tataagtata ttttacttga tagttattac agctatctct tttatgattg
      601 gctttttaat ttcctacctc ctgaaaggac agaatacaat agaaaataat acggtaccag
      661 tacaaaggga caataatatt gagttaatag agataataga aaataaaaaa caattacaga
      721 ttgataatat tgctcttaaa gttaatgatc ttcaaattca tttggattta ctagaatcta
      781 aattagtcca attagaaaat aggtctacat acgaaaagac tagtaatatt ggagaaaata
      841 tcactacaac atctgataat acatcacaag atccggcatt taatgatatc acacatgatt
      901 ctatatctaa aatattatca actgaaaaag caaaaagtaa atcctcaatt tttaatgaaa
      961 aacataatgc tactgaacac tatatcttaa aattaatttt aaaagattca ttaacttcta
     1021 atgaaataaa acaagctatt ggtagaacac gtgaacatac ttcacgactt atgaagaaac
     1081 tctatgaact taaattggtg gagagggata taactacaaa accatttaaa tataaattaa
     1141 cagaacaagg aaaaaagtat attggagatc aagtaagaaa taaagaaatt aatcaagaca
     1201 tacattaaat tcagcatcat gtgctaactc cactttaata gattgaccaa tattgttatt
     1261 aacttaacag gtaacaaata ccaagaaaaa taaatgttaa catagtgatt acgcatatat
     1321 aattaagttt gttaattcaa aaacttctaa gataatgaat tatttatctg cagtagaaat
     1381 aaaggggtta gatcaatgct tgttaacaaa tttaacatga ttctaactct gcagtagaaa
     1441 taaaggggtt agatcattta cattttttgc aattacgtga tatgcttatt attgttaata
     1501 ttttgttatt agtgttgtta caactcgtct cccccttcat ttcttttgca catataataa
     1561 agaattggct ttggtttaag tttaatatta ttatttaaat agtgtataat atttgattta
     1621 gcactttaaa ttgtaaagtt aataacatgt taatattata ataacatgtt aatataaatt
     1681 tgaaatgcaa tggaaagtaa ggggtaaggg gattatttta tatggtgagt tatattgagc
     1741 gatgatattt tagataatat ctttgaaaac gcagtaaaag gaaagtcgtt aatcaaaaat
     1801 aggaaaatct taacaataga ttacatccca cagaaattac aatttcgtga tgaagagaca
     1861 actacaatag ctcaaacttt atctgtatca ttaaaaggag cacgaccatc aaatttattg
     1921 ctatttggta agcctggaac aggaaaaact gcagtagtta aaaatgtaat taataagttt
     1981 aaagaaaaat caacagaact tggagtagag gttatcgtag tttttattaa tgctaaaata
     2041 gctaatacag cctataaagt tctttatgaa atagccgaag aaatgaatat aaataaaaca
     2101 gataaaaaaa atcaagttta ttttactggt ctctcgcttg gagaagcaac aaatagaatt
     2161 cttgatttca ttaaaaaaag acaattacac gtaatttttg ttatcgatga aatcgattcc
     2221 cttgttgaca aaaatggtga tgatatactt
//
LOCUS       DATCMF010000101         2098 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_19472, whole genome shotgun sequence.
ACCESSION   DATCMF010000101 DATCMF010000000
VERSION     DATCMF010000101.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2098)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2098)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2098
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19472"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            202..1443
                     /locus_tag="VIL14_01275"
     CDS             202..1443
                     /locus_tag="VIL14_01275"
                     /inference="COORDINATES: protein motif:HMM:NF039904.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HEY8522369.1"
                     /translation="MVLEFTGEITDPIHKYIRITDIEKKLIDTEVFQRLRKIRQLAGA
                     HLVYPSAQHTRFEHSLGVMHLAGLAAETLLDKGYITNKEDVESLRIAALLHDIGHGPF
                     SHLFEEVLSENESKKINHEIIGKKIIKETIILDILGKYGYDGDYVCKLSFGESQKMFY
                     NEIIAGSLSADIMDYLPRDSFFTGAEYGKVDYYRLISSFEVLSNGHLGINKSAINSLE
                     SMLISRYQMFKAVYFHKTVRAGEVMLLHSLMSADKQLNFSNFCIEEYLAYTDEKTIDI
                     ICSLKGNKFASDLALDYKKRKLLKCVYEKFLQNKHNAFNKELAGKKIRDFLEGVTEYL
                     DIDERFIFIDISRAPSMPLTPSKEELNSIMLVDNNFEFETPTSDIPLIDSITGFLDMI
                     RIYTPERNREKLEKVLRNIDL"
     gene            1457..>2098
                     /gene="pyrH"
                     /locus_tag="VIL14_01280"
     CDS             1457..>2098
                     /gene="pyrH"
                     /locus_tag="VIL14_01280"
                     /inference="COORDINATES: protein motif:HMM:NF012899.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HEY8522370.1"
                     /translation="MVEYPQKKRIVIKLSGSIFSLYDNHDQDSNNYYDIFKQYSDILA
                     NLTPNVQLIVITGGGSIARLYINFARKLGLDEASLDLLGITISRVNAKLLIASLGHYA
                     YPEVPISLDDVDRFVESNKIIVSGGLHPGQSTNATSALIAEKTRASEFINATDVNGIY
                     DSDPRTNKNAQLFAKIELGKLLHILLKESSMAGEYDLLDIVALKVIERSKIRTK"
BASE COUNT          775 a          265 c          349 g          709 t
ORIGIN      
        1 tttagtcttt ttcaaatatt taattaatac tatctattta ataactatat tgttaataaa
       61 taattatttc ttttttatag attatataac aataaaatta aatatcattt tattttctaa
      121 ttacacaaag aagaggttca tttgtatttg tcatatcaac actatttata agaaaatgta
      181 tttttataat aatatactta aatggtttta gaatttacag gagaaataac tgatcctata
      241 cataagtata ttcgtattac agatattgaa aaaaaattaa ttgacactga agtttttcaa
      301 cgattaagaa aaataagaca gttggccggt gctcacctag tatatccgag tgctcaacat
      361 acccgtttcg aacattcttt aggagttatg catttagcag gcctagcagc agagactctt
      421 ttagataaag gatatattac taataaagag gatgtggaaa gtttacggat agctgcatta
      481 ttacatgata tcggacatgg gcctttttct cacctttttg aagaagttct cagtgagaat
      541 gagtcaaaga aaatcaatca tgaaataata ggaaaaaaaa taataaaaga aacaataatc
      601 cttgatattt tgggaaaata tggatatgat ggtgattatg tttgtaagct ttcttttgga
      661 gaatctcaaa aaatgtttta taatgagatc atagcaggaa gtttatccgc agatattatg
      721 gattatttgc ctcgagatag tttctttact ggtgcagaat atggaaaggt tgattattac
      781 aggttaatta gttcctttga agttctttca aatggtcact taggtatcaa taaatctgca
      841 attaattctc ttgaatcaat gttaatctct agatatcaaa tgttcaaagc tgtatatttt
      901 cataaaacgg ttagagcagg tgaagtaatg ttattgcatt ctcttatgag tgcagataaa
      961 cagctcaatt tttcaaattt ttgtattgaa gaatatttag cctatactga tgaaaaaact
     1021 atagatatta tttgctcttt aaagggaaat aaatttgctt ctgatttggc tttggattat
     1081 aaaaaaagaa aactactgaa atgtgtttat gaaaaatttt tacaaaacaa acataatgcc
     1141 tttaataaag agttagcagg taaaaagatt agagattttt tggaaggggt aactgaatat
     1201 ttggatattg atgaacgctt catatttatt gatatctcac gagctccttc aatgcccctt
     1261 actccttcca aggaagaatt aaattcaata atgttagttg ataataattt cgaattcgaa
     1321 acgcctactt ctgatattcc attgattgat tcaataacag gttttttgga tatgattcgg
     1381 atttatacac ctgaacgcaa tagagaaaag ctagaaaaag tgttaaggaa tattgatctt
     1441 taaaagggga atagaattgg ttgaatatcc acaaaaaaaa cgaatagtaa taaaattgag
     1501 tggaagtatt tttagtctat atgataacca tgaccaagac agtaataact attatgatat
     1561 tttcaaacaa tatagtgata ttttagctaa tctcacacct aatgtacaat taatagttat
     1621 tactggaggt ggaagtatag caagacttta tatcaatttc gcaagaaaat taggactcga
     1681 tgaagcaagc ctagatttgc taggtataac catatcaaga gtaaatgcaa aattgcttat
     1741 tgcttctctg ggtcattatg cttacccaga agttccaata tcgttagatg atgttgatag
     1801 gtttgtagaa agtaataaaa taattgtttc aggaggatta catcctggcc aaagtactaa
     1861 tgctacctcc gctctaattg cagaaaagac cagagcgagt gaatttatca atgcaactga
     1921 cgtcaacgga atttatgatt ctgatcctag gacaaataaa aatgcacaat tatttgcaaa
     1981 aattgaatta ggtaaactac tacatatact tttaaaagaa agttcaatgg ctggtgaata
     2041 tgatttgctg gatatagtag ctttaaaagt aatagaaaga tctaaaatta gaacaaaa
//
LOCUS       DATCMF010000102         3687 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_19802, whole genome shotgun sequence.
ACCESSION   DATCMF010000102 DATCMF010000000
VERSION     DATCMF010000102.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3687)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3687)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3687
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19802"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            267..509
                     /locus_tag="VIL14_01285"
     CDS             267..509
                     /locus_tag="VIL14_01285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522371.1"
                     /translation="MEEPDKYFENAFLVDCHEFIINIDYPITMTAPVVYDVNIESQKN
                     YCDIQLAIIESNKERVIARWKKRNIFQDQSFRLEWK"
     gene            724..1857
                     /locus_tag="VIL14_01290"
     CDS             724..1857
                     /locus_tag="VIL14_01290"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF021127.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042578 - phosphoric ester hydrolase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0045227 - capsule polysaccharide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CapA family protein"
                     /protein_id="HEY8522372.1"
                     /translation="MQILFAGDVMLGRLVNEVLANAQFTYVWGDTIDIIKRADFSLIN
                     LECPVSSKGKEWNKTFKVFHFRANLDAIQVLNSASIDYVSLANNHILDYDIEALLDTL
                     DILDKNNISHSGAGRNLKEAMKPAIIEKKLKLKPSNNHDSYYNVHNEEVNNNGSKNTI
                     RIGLISLTDNEPEWEAKYDQAGINYIPTALDPDRYYYRLQNYIENAKKQSDLVIVSSH
                     VGPHFRETPSMKYVNFAHKIIDFGADIYWGHSNHMPQGIELYKHNDNNKIILYDCGDF
                     IDDYAIDSNYRNDLSFIFLLHFLMDKNHKLSNNNRNNGNILLQNSMIELIPTKISNFM
                     VNTIPVDDNDADLIIKRMAKRCSSLGTKYFIDEKKKRIKIFLK"
     gene            2131..2355
                     /locus_tag="VIL14_01295"
     CDS             2131..2355
                     /locus_tag="VIL14_01295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522373.1"
                     /translation="MKTGFKKDNIPRLVKRFIKIYPEDEPPFCYLLCDIETGLVYESS
                     GEKQMCKEHKTQIKYNMDTHRFYCLDTIRE"
     gene            complement(2564..>3687)
                     /gene="amrS"
                     /locus_tag="VIL14_01300"
     CDS             complement(2564..>3687)
                     /gene="amrS"
                     /locus_tag="VIL14_01300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="AmmeMemoRadiSam system radical SAM enzyme"
                     /protein_id="HEY8522374.1"
                     /translation="VESTCSILQLNNHCLGKEAELFLKLPNGRIKCTACARYCEIPEG
                     KDGLCGIRGVANGKLQLYAYGRIIAGNIDPIEKKPVTHYMPGSSIYSIATTGCNWLCK
                     YCQNYDISQRKKIEGTEMTPKLIVKTAINHGVHGIAYTYNEPSIFIEFAKDCGIEAHK
                     KGLFNIFVSNGYDTPQSIDMMSKFLDCITVDFKGSGEEKFVRQYIGIPNSKPVFESIK
                     QIKETTNIHIEITDLIVPQVGDNLEAARKLCKFIYNELSPDTPIHFLRFHPDYKMMEF
                     ESTPIDILEKHYVIAKEEGLRFAYLGNVPGHFLENTYCPECNNIVVKRYGFNILSWNL
                     DSDNCCNQCKYAIPIKGKPVESLNNSTNKRKRYFQFIDF"
BASE COUNT         1361 a          512 c          518 g         1296 t
ORIGIN      
        1 atttgttaga gatgattttt aagaaattat aatattaagt ttaccattct tataagataa
       61 aaaatctatg ctttgtaata atatatacaa aatctttttt aatttcaaaa tcaataaaat
      121 atttaaatgt acatttcaag gtacaactac gtttcatact agaacctcaa gatgaatgct
      181 aattaataag tttgctatag aagctaaaaa tccagttaga ctacaagttt ataattaata
      241 aataaataaa tgttttagaa tatgaagtgg aagaacctga caaatatttt gaaaatgcat
      301 tcttagtaga ttgtcacgaa tttataataa atattgatta tcctataact atgacagctc
      361 ctgtagttta tgatgtaaat atagaatctc aaaagaatta ttgtgatata caactagcaa
      421 ttatagaaag taataaagaa cgtgttatag caagatggaa aaaaagaaac atctttcaag
      481 atcaatcatt tagacttgaa tggaagtaaa attgacgatt ttcttcatac tacaacccat
      541 tagacaaaac taggtttgaa tgcaataaca ttttttagca ttgatattac taataataaa
      601 aattagcact ttattaatac aataaccaat gtcctaatat cttatataga atattttatt
      661 tagtattttt atttctttta attgaatttg aaaattttta tttataataa cataatatat
      721 cttatgcaaa ttctttttgc aggtgatgtt atgcttggta gacttgtaaa cgaagttctg
      781 gcaaatgctc aatttactta tgtctgggga gatacaatag atattataaa gagagctgat
      841 ttttctctta taaatttaga atgtccagtc tcttcaaagg gaaaagaatg gaataaaaca
      901 ttcaaggtct tccattttcg agctaatctt gatgctattc aagttttgaa ttctgcctct
      961 attgattatg tctccctagc taataatcac atactagatt atgatattga agcgttacta
     1021 gatacactgg acatattgga caagaataat atatctcatt ctggagcagg cagaaattta
     1081 aaagaagcaa tgaaaccagc tattatagaa aaaaaattaa aactaaagcc aagtaataat
     1141 catgactctt attataatgt tcacaatgaa gaagtcaata ataatggtag caaaaatact
     1201 attagaattg gattaatttc tttaactgat aatgagccag aatgggaagc aaaatatgac
     1261 caagctggaa taaattatat tccaacagca ttagatcctg atagatatta ttatagactt
     1321 caaaattata ttgaaaatgc taaaaaacaa tccgatttag ttattgtttc ttctcacgtt
     1381 ggaccacatt tcagagaaac accttctatg aaatatgtaa attttgcaca taaaataata
     1441 gattttggtg ctgatatata ttggggacat agcaaccata tgccacaagg aatcgagctt
     1501 tataaacaca atgataataa taaaataatc ctatatgatt gcggagattt tatagatgac
     1561 tatgcgatag attccaatta tagaaatgac ttatctttta tttttctctt gcattttctc
     1621 atggataaga atcataaatt atcaaataat aatcgcaata atggtaatat attgttacaa
     1681 aacagtatga ttgaacttat tcctacaaaa ataagcaatt ttatggttaa tactattcca
     1741 gtagatgata atgatgctga tctaataata aagagaatgg ctaaaagatg ttcatcttta
     1801 ggaacaaaat attttataga cgagaagaaa aagagaataa aaatctttct aaaataagat
     1861 agttagttaa tcaatgttaa actctaaatt agaaagaatc aaaacttaaa atatgatttt
     1921 acccagccca attatatatt agtcgaagca taggattctc atataagtat tgaacaatta
     1981 agcaaaacga agatcatgag atagaattgt tttctaattt ttaacctttt atcataatac
     2041 ttgtagattg agaaggaaaa gagaataaga aaaaaataaa gaatgtctta ataataagat
     2101 cccataattt taatttaaat aaaaagagga atgaagacag gattcaaaaa agataatatt
     2161 ccaagattag taaagcggtt cattaagata tatcctgaag atgagcctcc tttttgttac
     2221 cttctatgtg atattgaaac tggcttggta tatgaatcaa gtggcgagaa gcagatgtgt
     2281 aaggagcaca agacacagat aaaatataat atggacactc atcgctttta ttgtcttgat
     2341 accataagag aataagtctg ttttattcat tcagaaaacg gtttttcaag aatttaaatt
     2401 atcgttaaat gaaaaatttt tagaactaga aaattgtgtt aaaacggttg attcatctcc
     2461 agaatactga tggataagat tatcttatta ttttaatgac aattaaccaa taatattttt
     2521 agaatccaga catcttatct attttttgtc tatttggaca catctaaaag tctataaact
     2581 gaaaatacct tttcctttta tttgtactat tatttaatga ttcgacaggc tttcctttta
     2641 ttggaatagc atatttacat tgattgcaac aattatcgct atcaagattc caagacaata
     2701 tattaaatcc ataacgtttt acaacaatat tattgcattc tggacaatat gtattctcta
     2761 agaaatggcc aggaacattg cctaaatagg caaatcttaa accttcttct tttgcaatta
     2821 catagtgttt ttctaatata tcaataggag tagattcaaa ttccatcatt ttataatctg
     2881 gatgaaatct tagaaaatgt attggagtgt ctggactcaa ttcattatat ataaatttac
     2941 atagttttct agctgcttct aggttatctc ctacttgagg aacgatgaga tctgttattt
     3001 caatatgaat atttgtagtt tcttttattt gtttaattga ttcaaaaaca ggcttggaat
     3061 ttggaattcc aatgtattgt cgaacaaatt tctcttcacc gcttccttta aaatctactg
     3121 taatgcaatc aagaaatttg ctcatcatat caatagattg tggtgtatca tatccatttg
     3181 agacaaatat attgaataaa ccttttttat gagcttcaat gccgcagtct tttgcaaatt
     3241 caataaagat tgaaggctcg ttatatgtat atgcaatacc gtgtacccca tgatttatgg
     3301 cagtcttaac aatcagttta ggagtcattt ctgttccttc tatttttttt ctttgagaga
     3361 tatcataatt ttgacaatat ttacatagcc aattgcatcc agtagtagca attgaataaa
     3421 tactacttcc aggcatataa tgtgtaactg gcttcttttc tatgggatcg atatttcctg
     3481 caattattct accatatgca tatagttgca gctttccatt tgctacacct ctaataccac
     3541 aaagaccatc ttttccttcc ggtatctcac agtatcgtgc acaagctgta cattttattc
     3601 taccgtttgg tagttttagg aataattctg cctcttttcc taagcaatga ttatttaatt
     3661 gcaatatact acatgtactt tccacat
//
LOCUS       DATCMF010000103         2473 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_151181, whole genome shotgun sequence.
ACCESSION   DATCMF010000103 DATCMF010000000
VERSION     DATCMF010000103.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2473)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2473)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2473
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_151181"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            221..1201
                     /gene="hisG"
                     /locus_tag="VIL14_01305"
     CDS             221..1201
                     /gene="hisG"
                     /locus_tag="VIL14_01305"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003879 - ATP phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HEY8522375.1"
                     /translation="MAHIVKFVVPKGTIEEATLKILEEAWQKISGRARTYRIKLSDPE
                     IEVKLLRPQEIPTYVQEGLYDVGITGRDWIIEANADVKILLDLEYGRVKQVIAIPESF
                     QFNNLDEMIVDHVRREKPLRISAEYLTTTANYIKSKIAYQKYFGNSNPMIITPWLRVG
                     ENKNVQIFLSFGATEAKPPEDVDAICDITETGTTLAQNNLKIIDTIMESTSVLIANKN
                     SLKDNKKREKIADMIALLRGVVEARKKLHIFVNVKKENLDELLSTLPALKRPTVSNLS
                     EEGWYGVNTIIDKNEFIKIVPIMRKLAQGLVVSEPRQILPLEDINIDKEE"
     gene            1202..>2473
                     /gene="hisD"
                     /locus_tag="VIL14_01310"
     CDS             1202..>2473
                     /gene="hisD"
                     /locus_tag="VIL14_01310"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: protein motif:HMM:NF013013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004399 - histidinol dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HEY8522376.1"
                     /translation="MIHRINIKNAKLDVESVRYRISSNFSEDAIKKTREIIENVRNFG
                     DNAIKRYTSTYDKVELDSFQVNKEEIEEAYNCISDEHIKTINLIRNRLIRNETILLEH
                     LKKISSLYIQNENIQRIIQPISSVGCYVPGGSARYPSTLIMCVTPAKLAGVKRIVAIT
                     PTKINGKIDPLTLVSADICGVNEIYKIGGAQGIAGLAFGTDSIKRVDKIVGPGGMFVT
                     IAKLLVSNIVSIDMLAGPTELVIYADDKSNAKYVALDLISQSEHSKDTLCGLVTNSSK
                     FANTVEDEINNILENKISRQEIVTNSLKENGFIAITENEDLAIEFINEIAPEHLQIMA
                     KNELKMVKKITSAGLTLIGENTPSAASDYCLGSNHVLPTMGFGKSRTSLSILDFIRIA
                     NLVQASKKELEEIEPYIKIITKEEGLINHYEA"
BASE COUNT         1003 a          307 c          437 g          726 t
ORIGIN      
        1 gaaggaatcc agaaaggaca tatgagatta catgcgcgaa atatagccat tactgcagga
       61 gcaaccgatg aacaaatcaa tatcgttgca agcagacttg tccaagaaaa taatgttact
      121 gtaaataagg ccgaagaaat tatcgaatta atcaataaaa atgaaaattg atacaaagta
      181 gatatatatc tgatgaaaca aaaaattttt tgttatagtt atggctcaca tagtaaaatt
      241 tgttgtacct aagggaacca ttgaagaagc aactttaaag attcttgaag aagcatggca
      301 aaaaataagc ggtagagcac gaacatatag aattaagtta agtgatccag aaatagaagt
      361 taaacttctg aggccccagg aaattcctac ttatgtacaa gaaggattgt atgatgttgg
      421 aattacaggg agagattgga ttatagaagc aaatgcagat gtaaaaatat tgcttgattt
      481 agaatatggt agagttaaac aagtaatagc tataccagaa agttttcaat ttaataattt
      541 ggatgaaatg attgtagatc atgttagaag agaaaaacca cttagaatat ctgcagaata
      601 tcttacgact acagctaatt atataaaatc taaaattgcc tatcagaaat attttggaaa
      661 tagcaatcct atgattatta ctccctggct tagggttggc gaaaataaga atgttcaaat
      721 atttctctct tttggggcta cagaagctaa gccaccagaa gatgtagatg ccatatgtga
      781 tattactgaa actggaacaa ctttagctca gaacaattta aaaattatag atacaattat
      841 ggaatctact tctgttctaa ttgcaaataa aaattctctt aaagataata aaaagagaga
      901 gaagatagca gatatgattg cattattaag aggagtagta gaagcacgta aaaaactgca
      961 tatttttgtt aatgttaaaa aagaaaattt agatgaatta ctttctactt taccagcatt
     1021 gaagagacct acagttagca atttaagtga agaaggatgg tatggagtga ataccataat
     1081 tgataagaac gaatttataa aaattgttcc aattatgaga aaattagcac agggcttagt
     1141 tgtatcagaa ccaagacaaa tattaccatt agaagatatc aacatagata aagaagaata
     1201 attgattcat agaataaata ttaaaaatgc taaattagat gtagaaagtg tacgttatag
     1261 aatatcgagt aatttttctg aagatgcaat taaaaaaaca cgagagatta tagaaaatgt
     1321 tcgaaatttt ggtgataatg ctataaaaag atacacttct acatatgata aagtagaact
     1381 agattcattc caagtcaata aggaagaaat agaagaagca tacaattgta tttctgatga
     1441 gcatattaaa actattaacc ttattagaaa tagattgata agaaatgaaa ctattctttt
     1501 agaacacctt aaaaaaatat catcactata tatacaaaat gaaaacatac aacgaataat
     1561 ccaacctatt tctagcgttg gttgttatgt tccgggtgga tctgcaagat atcccagtac
     1621 actaataatg tgtgtaacgc cagcaaaatt agcaggagtt aaaagaatag tagcaataac
     1681 accaactaag ataaatggaa aaatagatcc ccttacgtta gtttctgctg atatttgtgg
     1741 agttaatgaa atatacaaaa ttggaggagc acaaggtatt gcaggattag cgtttggaac
     1801 tgatagtatc aaaagagtgg acaagattgt aggtccagga ggaatgtttg taacaattgc
     1861 aaaattattg gtttcaaata tagtatcaat tgatatgtta gcaggcccta cagaattagt
     1921 aatttatgca gatgataaat ccaatgctaa atatgttgct ttagatttga tttcccaatc
     1981 agaacatagc aaagatacgt tatgtggatt agtaactaat tcatctaaat ttgcaaatac
     2041 agttgaagat gaaattaata atattttaga aaataagatt tcacgtcagg aaatagttac
     2101 aaatagttta aaagaaaatg gatttatcgc tataacagaa aatgaagatt tagcaataga
     2161 atttattaat gaaatagctc ctgaacattt acagattatg gctaagaatg aattaaaaat
     2221 ggttaaaaaa attacatctg caggacttac tttaattgga gaaaatactc catctgcagc
     2281 tagtgactat tgtttaggct caaatcatgt tcttcctact atgggatttg gtaaatcaag
     2341 aacatcttta tcaatattag attttatccg aattgcaaat ttagttcaag cttcaaagaa
     2401 agagcttgag gaaattgaac cttatatcaa gataataact aaagaagaag gtctgattaa
     2461 tcattatgaa gct
//
LOCUS       DATCMF010000104         1725 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_78740, whole genome shotgun sequence.
ACCESSION   DATCMF010000104 DATCMF010000000
VERSION     DATCMF010000104.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1725)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1725)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1725
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_78740"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..427)
                     /locus_tag="VIL14_01315"
     CDS             complement(<1..427)
                     /locus_tag="VIL14_01315"
                     /inference="COORDINATES: protein motif:HMM:NF014177.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009007 - site-specific
                     DNA-methyltransferase (adenine-specific) activity
                     [Evidence IEA];
                     GO_process: GO:0032775 - DNA methylation on adenine
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HEY8522377.1"
                     /translation="MDICDNMSPNMKPFAKNISETCHPFIKWAGGKSRLISQIKKFIP
                     KEFNNYFEPFVGSGALFFYIVRSIKMKRNCYAHLSDINAELINVYKIIKDNLTDLIKE
                     LQYNEIEYHKDPRRFYYKLREETFRFNHIQQAARFITLNK"
     gene            complement(976..1344)
                     /locus_tag="VIL14_01320"
     CDS             complement(976..1344)
                     /locus_tag="VIL14_01320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522378.1"
                     /translation="MKNIILIAMVATFFITMSGSNLGNYILAQEGAITPEGSVNDTMS
                     GKNATQWANATLAFAQEGFTTKDLVNETIDLGNSSTSNATLAFAQEGAITPEGSVNDT
                     MSGKNATQWANATLATALVS"
     gene            complement(1465..>1725)
                     /locus_tag="VIL14_01325"
     CDS             complement(1465..>1725)
                     /locus_tag="VIL14_01325"
                     /inference="COORDINATES: protein motif:HMM:NF017380.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF763 domain-containing protein"
                     /protein_id="HEY8522379.1"
                     /translation="LALISEIIYGNRASWSDPAKYNYAHGGKDGVPYPIARNTYDNSI
                     KYLSEAINGSEIEKIEKISSLKRLSMYSNILFNTNDYNYNCK"
BASE COUNT          589 a          244 c          249 g          643 t
ORIGIN      
        1 tcttatttaa ggtaataaat cgagcggctt gctgaatatg attgaatcta aaagtttcct
       61 ctcttaattt ataataaaat cttcttggat ccttatgata ttcgatttca ttatattgta
      121 attctttgat aagatccgtt aaattatctt ttatgatttt atagacattt atcaattcag
      181 cgttaatatc agataaatga gcatagcaat ttctcttcat tttaattgat ctcactatat
      241 aaaaaaataa tgctccactg cctacaaaag gttcaaaata attattaaat tctttgggaa
      301 taaacttttt tatttgagaa ataagccgtg attttcctcc ggcccatttt ataaagggat
      361 gacaagtttc agaaatattt ttagcgaaag gtttcatatt gggcgacata ttatcacaga
      421 tatccataag aattcatcct tctatcctca aatataataa agcttcctta ctctgtaaaa
      481 taaatatatc tatcttagaa caaattataa gagaagtgat taaatcttta ttagtaaatc
      541 tatgattgaa tgtaaacata ataaatgtgt tttttaattt ctcaaaatta tttattctgt
      601 tgaaggttta ttgttttctt gttaagtata ttttaagata cataaacata ttataaaaac
      661 ccaaaggtga aaatttataa tgatgagtca acctttgcag tatgaatttg tctgattgta
      721 atttgtttaa tctgtatttt ctaataatct aacgacatta tattgaggaa tttaattagc
      781 aacagaataa taatggtcta gaaaaatgaa ctcatgttat taattgataa tatattcatt
      841 taaattcgac aaataaataa tagataaatt ataacactaa agtgaaaagt tatttattcg
      901 aagtatatat gagaaaattt tttaagctaa ctaaaaaatg aagggtaaaa acactaaaag
      961 aaaattatga tgaatttaag atactaatgc agtagccaat gttgcattgg cccattgagt
     1021 tgcatttttg cctgacattg tgtcattaac tgatccctct ggcgtaatag caccctcttg
     1081 agcaaatgct aatgttgcat tagaggttga agaatttccc aagtctatgg tttcgttaac
     1141 taaatcttta gttgtaaaac cctcttgagc aaatgctaat gttgcattgg cccattgagt
     1201 tgcatttttg cctgacattg tgtcattaac tgatccctct ggcgtaatag caccctcttg
     1261 agcaagaata taatttccaa gattcgatcc agacatcgtt ataaagaatg tcgcgaccat
     1321 tgcgattaat ataatgtttt tcataagctt ttcgatgtaa taaagaaaac atttcttata
     1381 aaagtttcct atactttttt agcgtttaat ctaatgctca ttacaatttt tgagagtgaa
     1441 aattttaagt ggaacaataa gggcttattt acagttataa ttgtaatcgt tggtattaaa
     1501 aagaatattg gaatacattg ataatctttt tagtgaagag atcttttcta ttttttctat
     1561 ttccgatcca tttattgctt cactcaaata ctttatagaa ttatcatatg tatttctggc
     1621 tatgggatat ggcactccat ctttgcctcc atgggcataa ttatatttgg caggatcgct
     1681 ccacgaggct ctattcccat aaatgatttc agatattaga gctaa
//
LOCUS       DATCMF010000105         1651 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_614665, whole genome shotgun sequence.
ACCESSION   DATCMF010000105 DATCMF010000000
VERSION     DATCMF010000105.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1651)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1651)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1651
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_614665"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..815
                     /locus_tag="VIL14_01330"
     CDS             <1..815
                     /locus_tag="VIL14_01330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522380.1"
                     /translation="VIAIADKYGIKEYYKNNVIFVEKENFYTASLNESASYDIIHIHS
                     VDALVYKLRRRYGNRKKIILHYHGTDLRGNFKKNISLALRLKRLGVRMKNKLWLLRNG
                     YTGSLQDTMQQLADIVLVSTPDLLKLANKSNYLPNPVDTELFNDNISNHEKDPNYDAI
                     TIKTEAIDIQKALNYIKHRNLTHNIYVHDRIYNPIPYKDMPDLLKKYNTYVDIKFVNG
                     KLLESSSKTALESLACGLQVLNHQLKYTKKLPHEHEAINVVNNLFSLYLSVQ"
     gene            1133..>1651
                     /locus_tag="VIL14_01335"
     CDS             1133..>1651
                     /locus_tag="VIL14_01335"
                     /inference="COORDINATES: protein motif:HMM:NF024868.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY8522381.1"
                     /translation="MKILYLTSFGLPNGRIEKSVLTAINNGYEVIFAGRESPQYKNNI
                     FSRMYSITWNAKARFGIPYYWHMVRKQIIKIIEEVRPDIIHAHTIFPAKMIKDLGIPF
                     IYDDNEHWAQYAKLIYEITNSKNSSRIGKWLTKQMKKRAISLWPAWEKEIVSNHPTIT
                     VSERIVTDLKKMG"
BASE COUNT          676 a          207 c          233 g          535 t
ORIGIN      
        1 aagtaatagc tatagcagat aaatatggta tcaaagaata ttataaaaat aatgtaatat
       61 tcgtagaaaa agagaatttt tataccgcat ctttaaatga atctgcttct tacgacatca
      121 tacatataca cagcgttgat gcattagtat ataaattacg tagaagatat ggaaatagaa
      181 agaaaatcat tttacattat catggaactg atctacgtgg taattttaaa aaaaatatta
      241 gtttagcatt gagattaaag cgacttggag taagaatgaa aaataagtta tggttactta
      301 gaaatggata tacaggatct ctacaagata cgatgcaaca gttagctgat attgttttag
      361 tctctactcc agatctatta aaattagcta ataaatctaa ttatctgcct aatcctgtgg
      421 atacagaatt gtttaacgat aatataagta accatgaaaa ggatcccaat tatgatgcaa
      481 ttactattaa aactgaagct atagacattc aaaaggcttt aaattatatc aaacatagaa
      541 atctaactca caatatatac gtacatgata gaatatataa tcctattcca tacaaagata
      601 tgccggactt attaaaaaaa tataatacat atgtagatat aaaatttgtt aatggaaaac
      661 ttttagaaag ttcaagtaag actgctttag aaagtctagc atgtggatta caagtactta
      721 atcatcaatt aaagtatact aaaaaattac ctcatgaaca cgaagcaata aatgttgtaa
      781 acaatttgtt tagcctttat ttaagtgtcc aatagtatta gtagagcaat ataatttgca
      841 ttctgattag tattttctta ttttatacag attaaagtta ataacacatc taaaatatta
      901 tatcaataaa tcttttctaa aatttcctct ctgaagatac tatactttaa tatgcagaat
      961 aatatttaat attgaattaa aatatcatat gattaaaatc cctgattggt aattctatta
     1021 tatataactg aatatataat aaataattaa tttaaaagaa attaaggttt atgagacatt
     1081 aaagatcata gccgaaagtt ttactaaatg ctttaaatct ctactataat gaatgaagat
     1141 tttatatcta acaagttttg gattaccaaa tgggaggatt gaaaaatctg ttttaactgc
     1201 tataaataac ggttatgaag taatttttgc tggaagagaa tcaccccaat ataaaaataa
     1261 tattttttct aggatgtact ctattacatg gaatgccaaa gcaagatttg gaataccata
     1321 ttattggcat atggttagaa aacaaataat aaaaatcata gaagaagtca gacctgatat
     1381 aattcatgca catactattt ttccagctaa gatgattaag gatttaggaa tcccgtttat
     1441 atatgatgat aatgaacact gggcgcaata tgcaaaactt atttatgaaa taacaaattc
     1501 caaaaattct agtagaatag gaaaatggtt aaccaaacaa atgaaaaaac gagcaatatc
     1561 tctatggcct gcatgggaaa aagaaattgt atcaaatcat cccactatta ctgtttcaga
     1621 acgcattgta actgatttaa aaaagatggg g
//
LOCUS       DATCMF010000106         1533 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_211356, whole genome shotgun sequence.
ACCESSION   DATCMF010000106 DATCMF010000000
VERSION     DATCMF010000106.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1533)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1533)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1533
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_211356"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..411)
                     /locus_tag="VIL14_01340"
     CDS             complement(<1..411)
                     /locus_tag="VIL14_01340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522382.1"
                     /translation="MENTSTTIPSITSILKKISDDKALILFNHIAVSDGDRYIPLREM
                     NLTTKQYYSRISGLLSVGLIRRDKGKYSLTLLGKVVYDSQMTIGKSLAYYWKLKAIDS
                     IEMSASVTSGIPEGERLQLINALIDNHRIKDILMK"
     gene            complement(1174..1485)
                     /locus_tag="VIL14_01345"
     CDS             complement(1174..1485)
                     /locus_tag="VIL14_01345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="C2H2-type zinc finger protein"
                     /protein_id="HEY8522383.1"
                     /translation="MPFWFSKILFHGENNNVCDQCGQKFEKYDELVAHARHVHHETIV
                     KCHDCGKEFIHEKDRLHHVREEHEKKIDHRTHKWEHVHDNKINSQEQVDDQTRNFSDN
                     F"
BASE COUNT          487 a          280 c          287 g          479 t
ORIGIN      
        1 tttcattaga atgtctttga tacggtggtt gtctatcaga gcattaatca gttgtaatcg
       61 ttctccttct ggaataccag aagtaaccga agcactcatt tcaatagagt ctatcgcctt
      121 tagtttccag taataggcaa gtgatttacc tatggtcatt tgcgaatcat aaactacctt
      181 tcctaataag gtaagagaat actttccctt atctcttcta atcagaccga cacttaacaa
      241 accagaaatt ctagaataat attgctttgt agttagattc atttctctta atggaatata
      301 cctatctcca tcagaaacag caatgtgatt aaagagaatt agtgccttat catctgagat
      361 ctttttcaag atagaagtta tcgagggtat agtagtgcta gtattttcca tgtaagaaca
      421 cttgcttata tacggggttc tattaaggga ttacaagcca aacagagcct ataaaagcca
      481 ttatcgggtt aaacttgtct tatttcccat agaaaggcca tcagttcatg acattgagtg
      541 cggggtaaga tggtgactga acgtaccccg gaaataaacc cagtcaaatg agtgtagtgg
      601 aaatgcagag tgtactaact ctggttcaat aaaattcgca ccagcaccat aaaataaaaa
      661 tgtgaggcaa gtagcttcaa caacctcctt tgttgttctt atcagtaaag atccatatgt
      721 cgaaagaata tgaaactcag aatagcctga tggttagtcc gtggccggtg ccgccagacc
      781 ctaacgattg ttataaggtg ctgaagttaa cctccgagtc gtagattatt ggaaattata
      841 taatataagt aaagcgggca ggaaaccaga atcagaatga gtggaagcaa agggttcatg
      901 cttgtattcc caccttttat acaacaggat acacggagag cacggtagcg gcaaatccag
      961 attaatatac agagtatatc aagtcacaag aaataatccc tctaataata attggaaaac
     1021 catatggttt gatgcatggg aataagaacg aatagattct tcaaacctga tcaccataga
     1081 tatttgttgt atccgatgaa tgttgaagga gtacaactat tatggtaaga ctaggttagc
     1141 aggtgggaat tacctattct taatttattt ctctcagaaa ttatcactaa aatttctggt
     1201 ctggtcatcg acttgctcct gtgagtttat tttgttgtcg tgaacatgtt cccacttatg
     1261 agttctatga tctatctttt tctcgtgctc ttctctcacg tgatgtagcc tatccttctc
     1321 atgaatgaat tctttgccgc aatcatgaca ttttacaatc gtttcatggt gaacatgtct
     1381 tgcatgagct acaagttcat cgtatttttc aaacttttga ccgcattgat cacatacgtt
     1441 gttgttttct ccatgaaata atattttaga gaaccaaaaa ggcattagta cagagaacca
     1501 atagtactat taaaccaatt agtaaattag aga
//
LOCUS       DATCMF010000107         2044 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_344611, whole genome shotgun sequence.
ACCESSION   DATCMF010000107 DATCMF010000000
VERSION     DATCMF010000107.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2044)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2044)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2044
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_344611"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1921
                     /gene="acs"
                     /locus_tag="VIL14_01350"
     CDS             <1..1921
                     /gene="acs"
                     /locus_tag="VIL14_01350"
                     /EC_number="6.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003987 - acetate-CoA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0019427 - acetyl-CoA biosynthetic process
                     from acetate [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="acetate--CoA ligase"
                     /protein_id="HEY8522384.1"
                     /translation="VRISLEGKKFNKIRKYAEEQPEQFWAEQAKNLVWFKEWNKVLDW
                     SDQPFAKWFVGGKLNACVNCLDRHLAYDNNNLKNKAAIIWEGENGENKTFTYYQLYRS
                     VNIFANALKNIGVKKDDRVTIYLPMVPELPIAMLSCARVGAIHNVIFSGFSSQALVDR
                     INDSKSKIIITADGSYRRGKLLELKRTVDEAIANAPSVEHVVVLKRVSNNVRVGSKDL
                     WWHDIIENASQYCEPEVVDSSHPLYILYTSGTTGKPKGVVHSTGGYLTYLNATSKWVF
                     NFRKDDIYFCTADVGWVTGHSYIVYAPLMHGITQIMYEGAPDYPKPDRYWKIIEKHGA
                     TILYTTPTALRMYMRFGDAIPNSFDLSSLRLLGTVGEPINPEVWMWYFKTIGKENCPI
                     IDTWWQTETGGIMISACTGIEETIPMKPGSATFPIPGIYLDVVDENGSSVAADRKGYL
                     VIRKPWPGMLMTLWKDDEKYRNTYWKKFDNVYYTGDYALSDSSGYIWLLGRADDVLKI
                     AGHRLGTMELESAFVSHKSIAEAAVTSMPDEKKGESIIAFVVLRTGFSVSDNLRRELV
                     DYIRNAVGSIATPKEIYFVNKLPKTRSGKIMRRLLKSIANGATEIGDVTTVEDGTSLE
                     EVRQAYNEMHKTPNP"
BASE COUNT          695 a          313 c          450 g          586 t
ORIGIN      
        1 agttaggatt tcgttagaag gaaaaaaatt taataaaata agaaaatatg cagaagagca
       61 acccgaacaa ttttgggcag aacaagcaaa gaatctagtc tggttcaaag aatggaataa
      121 ggtgcttgat tggagtgatc agccgtttgc aaagtggttt gtcggaggta agttaaacgc
      181 atgtgtcaat tgtctggata gacatctcgc ttatgataat aataatttaa aaaataaggc
      241 tgccataatc tgggaaggcg agaatggtga aaataaaaca tttacctatt atcaactata
      301 tcgttctgtt aacatatttg ccaatgcttt gaaaaatatt ggagttaaga aagatgaccg
      361 tgttacaata tatcttccta tggttccaga actcccaatt gctatgctgt catgtgcaag
      421 ggtcggtgcc atacataatg ttattttctc tgggtttagt tctcaggcgc tggttgatag
      481 gataaatgat tcaaaatcga agattataat aactgctgat ggtagttata gaagaggtaa
      541 actcttagaa ttaaaaagga ctgttgatga ggccattgct aatgcacctt ccgtagaaca
      601 tgttgtggtt ttgaaaagag tatcaaataa tgtcagagta ggatcaaagg atttatggtg
      661 gcatgacata attgagaatg catcacaata ctgtgaacca gaggttgtag atagtagcca
      721 ccccctgtat attctatata cttccggcac aacgggtaaa ccaaaaggtg tagttcacag
      781 tacaggtggc taccttacat atctcaatgc aacctctaaa tgggtcttca attttaggaa
      841 agatgacatc tacttttgta ctgcagatgt tggttgggta acaggtcata gctatatcgt
      901 ctacgctcca ctcatgcatg gcattactca aataatgtac gagggagccc cagattatcc
      961 aaaacctgat agatactgga agataattga aaaacatggt gctacaattc tgtatactac
     1021 tcctacggct ttacgcatgt atatgaggtt tggagatgct attcctaact catttgattt
     1081 atcttcgctg cgcttattgg gaacagtagg cgaaccaatt aatccagaag tatggatgtg
     1141 gtattttaaa acaataggta aggaaaattg tcctattatt gatacttggt ggcagacgga
     1201 aacaggtgga attatgataa gtgcatgtac tggtattgag gaaactattc ccatgaagcc
     1261 gggttctgca acatttccaa ttcctggaat atatctagac gttgtcgacg aaaatggaag
     1321 ttcagtagcc gctgatagaa aagggtattt agtaattaga aaaccttggc ctggaatgtt
     1381 gatgacacta tggaaagatg atgagaagta tagaaataca tactggaaaa agtttgacaa
     1441 tgtgtattat acaggtgatt atgcgctatc cgattccagt ggttatattt ggcttctagg
     1501 tagggctgat gatgtactca aaatagccgg acacagactt ggtacaatgg agctggaaag
     1561 tgcatttgta tcacataaat ctattgcaga agctgcagta acaagtatgc cagatgagaa
     1621 aaaaggggag tctattatag cgtttgtagt acttcgaact ggcttttcag tatctgataa
     1681 tttacgtaga gaacttgttg attacattag aaatgctgta ggatcaattg caacgcctaa
     1741 ggaaatctat tttgttaata aacttccaaa aactagaagt ggaaagataa tgcgaaggct
     1801 acttaaatcg atagcaaatg gagcaacaga aattggagat gtaactacgg tagaggatgg
     1861 gacatcatta gaagaagtaa gacaggctta taatgaaatg cataaaacgc ctaatccttg
     1921 aattaggaca tgtagttagt atacttatta acagcataaa cacaccgtta gatagttgaa
     1981 ctcagcaacc aaagtaattg ccaagtactc accattatta gatagaaaga tagaagaaat
     2041 tagt
//
LOCUS       DATCMF010000108         2098 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_543133, whole genome shotgun sequence.
ACCESSION   DATCMF010000108 DATCMF010000000
VERSION     DATCMF010000108.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2098)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2098)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2098
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_543133"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1343)
                     /locus_tag="VIL14_01355"
     CDS             complement(<1..1343)
                     /locus_tag="VIL14_01355"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY8522385.1"
                     /translation="MQRSFLVGKFRRYFNKTVLSLLPYKWKALGNTTIGTLLASLDTN
                     IIIVALPQIASDLDVSMFTMVWIVLSYTLVTASILLNFGRLADMFGRVKLYTLGFMIF
                     TVGSGLCSLSQTGEQLVLFRIVQSVGAAFLFSNSVAILTDAFPSNERGRALGFNQVAI
                     VLGSVLGLVLGGFLTSYLGWRSVFWINIPIGVFGCLWSYTSLRESIEPTIKGKEKEKT
                     KVDWLGNFTFAAGLFLLLLGITFGPFGIFSIDWIVYVLIISGISLLVTFGFIEINIDY
                     PMFQFSLFKIKAFLGGNVAILLNSIARGDFTLLISFYLQGATMMLSPSEAGIYLIPVS
                     ASLAISGSISGWLSDKYGTRFFAGIGLFVSGIGFFLLTQLSPTTSTIDILLPFTLIGS
                     GFGMFASPNRASIMNSVPANRRGVSASTGTTLLYVGRSLSLGISFLILTSIMPSE"
     gene            complement(1670..>2098)
                     /locus_tag="VIL14_01360"
     CDS             complement(1670..>2098)
                     /locus_tag="VIL14_01360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEY8522386.1"
                     /translation="KEEKRRRFFGGNKLEIKVTETGLRMLNSKKQELQQQAEQLKQWN
                     KSGNTAQLQSYMNSNNNRSWMPFMLFSGIMDILFFTSMMSMMGMALNPMESQMAADSG
                     SGGDGGAGDTETDSSEAGGSEADTGGGDFGGFDGGGFGDF"
BASE COUNT          690 a          456 c          351 g          601 t
ORIGIN      
        1 tgttctgacg gcataatact tgtcaatatc agaaatgaaa tacctaagct caacgatcta
       61 cctacatata gcaatgtagt acctgtacta gcagatactc cccttctatt tgcgggtaca
      121 ctattcatga tcgatgctct atttggtgag gcaaacatcc cgaatcctga tccaataaga
      181 gtgaaaggta atagtatatc gatagttgaa gtagtcgggc ttaactgagt cagcaggaag
      241 aaacctatcc cggaaacaaa aagtcctata cctgcaaaga atctagttcc atatttatca
      301 gacaaccaac cactaataga tccgcttatt gccaaagatg cagaaactgg tatcaagtag
      361 atcccggctt cagatggact aagcatcatt gttgcacctt gaagatagaa tgatataagc
      421 agagtaaaat ctcctctggc tatagaatta agaagaatgg cgacatttcc tcctaagaag
      481 gctttgattt tgaataaaga aaactgaaac attggataat ctatatttat ttctatgaat
      541 ccaaacgtta ccaaaagaga aatgccgcta ataatcagta catacactat ccagtcaata
      601 gagaatatac cgaacggacc aaatgttatg ccaaggagta gaaggaataa acctgctgca
      661 aatgtaaaat ttccaagcca atctactttt gttttctctt tttcctttcc cttaattgtt
      721 ggctctattg attctcttaa acttgtataa gaccataggc acccaaaaac acctatggga
      781 atatttatcc aaaatacaga acgccatcct aaataggaag tcagaaatcc tccaagaaca
      841 agaccaagca cagaacctaa tacaattgca acctgattga atccgagggc ccttcctctc
      901 tcatttgatg gaaatgcatc tgtcagaatc gcaacactat ttgagaaaag gaaggcagct
      961 cctactgatt ggacaattct gaataaaact aattgttcac ctgtctgaga tagactacat
     1021 aacccagaac caacagtaaa tatcataaag cctagagtat acaatttgac tctaccaaac
     1081 atatcagcaa gacggccaaa gttcagaaga attgatgcgg ttacaagagt ataactaagg
     1141 actatccaca ccatggtaaa catagaaacg tcaagatccg aagcgatctg aggcaaagct
     1201 acaattatta tattcgtatc aagcgaagcc aaaagtgtgc caattgtggt atttcctagg
     1261 gctttccatt tgtaaggtaa aagactcaat accgttttgt taaaataacg tctgaatttc
     1321 ccaaccagaa aagatctttg cataatatgc tattaaaggt attaaattga aactgaaggc
     1381 aatatcaaaa cgtactccta aactataagt cctatttcaa ggcccttttt aagccgttag
     1441 gtataaatct gtatcataga tgtatcatga accgaaggag atcaaaaaag gtttaagttg
     1501 agtctgtcat ggttgccggc aagaaacaat ggctaggttc aatgagttag atcattcact
     1561 ccctcaaaaa taatcatcta taaaaacagc cattcgtttg tgcatgcatt atttgcttgt
     1621 tcccattagt acgtttgata tagctgatat ggacttgcaa cgataaagcc taaaagtcgc
     1681 caaaacctcc tccgtcgaac ccgccaaagt ctcctccacc cgtgtctgct tcactcccac
     1741 cagcctcgct actatctgtc tcggtatccc ctgctcctcc atctcctccg cttccactat
     1801 ctgcagccat ttgactttcc ataggattga gtgccattcc catcatagac atcatggatg
     1861 taaaaaacaa tatatccata attccagaaa ataacataaa aggcatccac gacctattat
     1921 tattagagtt catataactt tggagctgag cagtattgcc acttttattc cactgcttta
     1981 attgttcagc ttgttgttgt agttcttgtt tctttgagtt tagcattctt aatcctgttt
     2041 cagttacttt gatctccagt ttgttgccac caaagaaccg tcttctcttt tcctcttt
//
LOCUS       DATCMF010000109         1590 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_79782, whole genome shotgun sequence.
ACCESSION   DATCMF010000109 DATCMF010000000
VERSION     DATCMF010000109.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1590)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1590)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1590
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_79782"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1443
                     /locus_tag="VIL14_01365"
     CDS             <1..1443
                     /locus_tag="VIL14_01365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522387.1"
                     /translation="TEVDKGVNPGGHYKAVWSRDASFILKDQFLSGHFKIALQQILLI
                     WSNQIITTQEPSLSLLYCNLKKKPLLYGRGSPEMDFNPIVADDITKKKFDGALPTTIY
                     YEKGFCEVYGQNPDIDSLALMVSTTSWILSNLLDLKDSPTKGEPVITLSLNERVDNRR
                     ENEIPSSKFSLNDIINFLIPCMLKAVLYLQNRDIDNDGLLEQKHNEDWMDTILRIGKV
                     VYSQACWILALKNFSILLKKRGNEKESKRLEEMTNRAILAVEDKMWSEKDGCYIDLLD
                     ADLHLDEKMHNRLVTQDISLYLVALTEEDTKDASYDHIDSMNMKEYSPKWTNYTNNIN
                     LDMYQRALSTLEVLKKRAWKNNLPLVTETEITKTGPWLLKTNEYHNHTFWAWITGIEM
                     LARSRLGKIDDCSFLLSKFVSNSGVHSNMLYEWVNPLTFQGSGAYPFRTGISSVRIAA
                     IESLTHRASEYDDYQTIENHLGCANTNTNK"
BASE COUNT          596 a          229 c          276 g          489 t
ORIGIN      
        1 acagaagtag ataaaggcgt taatcctggc ggccattata aagcagtctg gtcaagggat
       61 gcatctttta tcctcaaaga tcaattcctt tcgggccatt ttaaaatagc acttcaacaa
      121 attcttttaa tttggtctaa tcaaataatt acaacacaag aaccatcgct atctcttcta
      181 tattgtaatt tgaaaaaaaa acccttattg tatggaagag gttcaccaga aatggatttt
      241 aatccaattg ttgcagatga tattactaag aagaaatttg atggtgccct tcctactaca
      301 atatactatg agaaaggttt ttgtgaagtt tatggacaaa atcctgatat cgattcttta
      361 gcattaatgg tatcaactac atcatggatt ttgtctaatc tgcttgattt gaaggatagt
      421 cctactaaag gagaacctgt aattacatta tcactgaatg aaagagttga taatagaaga
      481 gaaaatgaaa ttccttcctc aaagttttca ttaaatgata tcataaactt tttgattcca
      541 tgtatgctaa aggcagtact atatctacaa aatagggata tagataatga tggattatta
      601 gaacagaaac ataatgagga ttggatggat acaattctac gtataggaaa agtagtttat
      661 agtcaagcct gttggattct tgcattaaaa aatttctcta tattattaaa aaagagagga
      721 aacgaaaaag aatcaaaaag gttagaggaa atgaccaaca gagcaatatt ggcagtagaa
      781 gataagatgt ggtctgaaaa agatggatgt tatattgatc ttctggacgc tgatttgcat
      841 ttggatgaaa agatgcataa tagacttgtc actcaagata tttctctcta tcttgttgca
      901 ttaacagaag aagacactaa agatgcaagc tatgaccata tcgatagcat gaatatgaaa
      961 gaatattcac caaaatggac gaattatact aataatatta atttagatat gtatcaacgt
     1021 gcattaagta ctctggaagt attaaagaaa agagcttgga aaaataattt acctttggta
     1081 actgaaaccg aaattacaaa gacaggacca tggctactta aaacaaatga atatcataat
     1141 catacttttt gggcttggat aacaggaata gaaatgcttg cacgaagcag gcttggcaag
     1201 atagatgatt gtagtttttt gctatcaaaa tttgtttcca atagtggtgt acattcaaat
     1261 atgctatatg aatgggtaaa ccctttgact tttcaaggca gtggtgcata cccatttagg
     1321 acaggaatat cgtctgtaag gatagctgca attgaatctc ttacacatag agcatccgaa
     1381 tacgacgatt atcagacaat tgaaaatcat ttaggttgtg caaatacaaa tacaaataaa
     1441 taaaaaaaca cacttaaatt ttgataacta attaaataga ttgctaaaac gacagagtaa
     1501 taaataataa ttcttctata tcattaccac tctatagaga gttctattag tcaatcaatt
     1561 agtgttactt tacaggattc ttaatccata
//
LOCUS       DATCMF010000110         2142 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_212278, whole genome shotgun sequence.
ACCESSION   DATCMF010000110 DATCMF010000000
VERSION     DATCMF010000110.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2142)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2142)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2142
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_212278"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..424
                     /locus_tag="VIL14_01370"
     CDS             <1..424
                     /locus_tag="VIL14_01370"
                     /inference="COORDINATES: protein motif:HMM:NF013231.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEY8522388.1"
                     /translation="TQKEIAERLGLEGPTLIPIIDKMEKDYLVVRKVDPSDRRNNRIY
                     RTEKADELWDKMVKCAAKIRQVSLRDVPEENIYITKNVLENVYQNLRNQFEVGCNIGS
                     NNPLADSTASDIHNATTPVSATAIKSGKIGKDRKKGRL"
     gene            393..2087
                     /locus_tag="VIL14_01375"
     CDS             393..2087
                     /locus_tag="VIL14_01375"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY8522389.1"
                     /translation="MGKIAKREDSKMKPLPLDYNPNSNQPNKASSTNIDTFNSSSSNS
                     VKIPAYAWKMLAILSCIATMVMYAETMLIPAIPDLIRDFHVSYSMSSWILTSYLIAGA
                     VMTPIAGKLSDIYGRKKILLIIMVIYALGVSMAGFASDIYFMIFARAVQGIGMSMFPI
                     AFGMIRDQFPREKISIGQGVITSMFASGAVLGLTVGGIIVQDYGWHNTFFTIIPIAIA
                     LLLIIWRFIHVADIKDEDQSQERSRILEGDNIGKTRSGNDKTTFAKVSNQIDIKGAIA
                     LAITVASFLLALTLLETSGSNIEAASFANGNDNHPSNANSLSNILPFLIIGVISFVLF
                     VIIERREKYPLVDFKLMLHKSILPASLIIMLVGFSMFMVFQTIPILVRNPEPLGFGED
                     AISAGKVQLPFAIVLLIFGPTSGFIVSKLGSLKPIIFGTIITTAGFIGLLMFHSTELL
                     VSVNLGILSTGLSLTSVGAMNVIILSTPRQFTGVSLGMSSLMRIVGASIGPALAGMYM
                     QINQASLNIDGIMNYFPSSMSFDLIFLSAVIVSIISIALAIILRKRVTKMAIPNLS"
BASE COUNT          702 a          363 c          401 g          676 t
ORIGIN      
        1 tactcaaaag gaaattgctg aaagactagg acttgaagga cctactctta ttccaattat
       61 agacaaaatg gaaaaagatt atttggtggt aagaaaggta gacccgtcgg acagacgaaa
      121 caatagaatt taccgtacag aaaaggcaga cgaattatgg gataagatgg taaaatgtgc
      181 agcaaaaata agacaggttt ctttaaggga tgtaccagaa gagaatatat acattacaaa
      241 aaatgtttta gaaaatgtat atcaaaacct cagaaatcag tttgaagttg gttgtaatat
      301 tggtagtaat aaccctttag cagattcaac agcaagtgat atacacaatg ctactacccc
      361 tgtttctgct accgcaataa aatcagggaa aattgggaaa gatcgcaaaa agggaagact
      421 ctaaaatgaa accactacca ttggactata atcctaatag taatcaacca aataaagcaa
      481 gttctactaa tatagatact tttaattctt cttcctctaa ctctgtaaaa attccagcct
      541 atgcatggaa aatgttggct atactaagct gcattgcaac tatggtaatg tatgcagaaa
      601 ctatgttgat cccagctata cctgatctta tcagagattt tcatgtatca tatagtatgt
      661 cttcttggat tcttacttct tatcttatag caggagccgt tatgactcca atagctggca
      721 agttatcaga catctatggt agaaagaaga tcttactcat tataatggtg atttatgcac
      781 tcggagtatc tatggccgga tttgcctcag acatatactt catgatattt gctagagccg
      841 ttcagggaat aggaatgtcg atgtttccta ttgcatttgg tatgataaga gatcaatttc
      901 caagagaaaa aatatcgata ggtcaaggtg taataacttc tatgtttgca tctggagctg
      961 ttctaggttt aacagtggga ggaattatag ttcaagacta cggatggcac aatacattct
     1021 tcacgataat accaattgca attgcccttc ttttaataat atggcgattt attcatgtgg
     1081 ctgatattaa ggacgaggac caaagccaag agcgatcaag aatactagaa ggtgataata
     1141 tcggtaaaac aagaagtgga aatgacaaaa caacttttgc taaggtttca aatcaaattg
     1201 atattaaagg tgcaattgca ttagccatta cagttgcctc atttctgtta gccctgacac
     1261 tcctagaaac atctggcagc aatatagagg cagctagctt cgctaatggt aacgacaatc
     1321 atccatccaa tgctaattcc ttatcaaaca ttttaccttt tcttatcata ggagtcattt
     1381 catttgtatt gttcgtaatt atagaaagac gagaaaaata tcccttggta gattttaaac
     1441 tcatgctcca taaatcaata ctaccagcaa gtctgattat aatgctagtg ggattttcta
     1501 tgtttatggt ttttcaaaca ataccgatat tagtcagaaa tcctgagcca cttggttttg
     1561 gagaagatgc cataagtgcc ggaaaagtac aacttccatt tgccatagta ctcttaatct
     1621 ttggccctac ttctgggttc atagtgtcaa aattaggctc attaaagcca atcatctttg
     1681 gtaccattat aactactgca ggtttcattg gtttgcttat gttccattca actgaattat
     1741 tagtttcagt caatcttgga atcctttcta ctgggttgtc tttgactagt gtaggggcca
     1801 tgaatgtgat tatattatcc actcctagac agtttactgg tgtatcttta ggtatgagca
     1861 gtcttatgag aattgtaggg gcatcgatag gtccagcttt agctgggatg tatatgcaga
     1921 taaaccaagc ctcgttgaat attgatggga taatgaacta tttcccttca tctatgtcgt
     1981 ttgatttgat attcctcagt gctgtcatag tttcgattat ttcaatagca ttggcaataa
     2041 tattgagaaa gagagttaca aaaatggcta tacctaattt gtcttagtag tcggtaaacc
     2101 gaaattattt tttatataaa acttgaataa ctacactatt ag
//
LOCUS       DATCMF010000111         2642 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_477255, whole genome shotgun sequence.
ACCESSION   DATCMF010000111 DATCMF010000000
VERSION     DATCMF010000111.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2642)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2642)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2642
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_477255"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            45..1310
                     /locus_tag="VIL14_01380"
     CDS             45..1310
                     /locus_tag="VIL14_01380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004013 - adenosylhomocysteinase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylhomocysteinase"
                     /protein_id="HEY8522390.1"
                     /translation="MKRQSLTHKKSVGIKYANSRHLFETGKLSHEWAVKMMKVITKIT
                     EKYQKTKPLANFKLGFCLHITKETSVLVMAAKALGAQISLCSANPLSIQPDVMEFLRY
                     NEIDVFAKRDATRIEFFQNMSKVANSNPDIITDDGGELHGIVHKRKIKGIIGGTEQTT
                     SGIIRILSLKSKFGINYPIIGVNNAKSKHFFDNRYGTGQSTIHGLLKTLGILIAGKQF
                     VVCGYGWVGKGVSSCLRGLGARVTITEVDPIKALEAHMDGFNVQRLKETLPKGDCFIT
                     CTGQRDVITKYDFQILKNGAFLANAGHFDVEIDVDYLYAQNNPPVQMRPYVECFDING
                     KKINLIAKGRVINLVGGEGNPSEVMDLSFSNQLLSILYITKNYKNLEKDLHEVPKKID
                     EKVAKVALSSFGIKIDKLTKEQIEYHTKG"
     gene            1679..>2642
                     /locus_tag="VIL14_01385"
     CDS             1679..>2642
                     /locus_tag="VIL14_01385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HEY8522391.1"
                     /translation="MLSDTNNNNNNNNIHYNNQLSSYSIDSEDGFEANKPIVITTALP
                     YANGEIHLGHISSTYLPADIFTRFLRISKKKVYHVGASDDFGTPILIKAEKENKTPKE
                     FVDYWNKRDREDFNAIGISFDKFYKTSSIENQKFVKDVFNKLRSNGHIYEKEVIQFYC
                     DFDKKFLPDRYVIGICPYCKSQDQYSDLCEKCGRVPEEILEPKCGICGQSPIKKRSKH
                     FFFKLSNFSFELKKWLTDNKNLQVDIKNYVLHWINEGLEDWDITRDLDWGINIPLDDA
                     KGKVFYGWFDNHLCYISTFNTLMQERLGRNGKEIWNTSSIYHFIG"
BASE COUNT         1015 a          348 c          439 g          840 t
ORIGIN      
        1 atatttcata tttaatatca acactattgt aattattata tcaaatgaaa agacaatctt
       61 tgacacataa aaagtctgtg ggaataaaat atgctaattc acgacatttg tttgaaacag
      121 gtaaattatc acatgaatgg gctgttaaaa tgatgaaagt catcacaaaa ataacagaaa
      181 aatatcaaaa gactaaacct ttagccaatt ttaaattagg tttttgtttg catataacca
      241 aagagacctc agtacttgta atggccgcaa aagcacttgg agcacaaata tctctctgtt
      301 cagccaatcc tctatccatt caacccgacg taatggaatt tttgagatac aatgagatag
      361 atgtatttgc aaaaagagat gccacgagaa ttgagttttt tcaaaatatg agcaaagtag
      421 caaatagtaa tcctgatata attactgatg atggcgggga attacacggt attgttcata
      481 aacgaaaaat aaaaggtata atcggaggaa cagaacaaac tacgtcagga attattagaa
      541 ttttatcact taaatccaaa tttgggataa attatccgat aattggtgtt aataacgcta
      601 aatctaaaca tttttttgat aatcggtatg ggacaggtca aagtaccatt catggattat
      661 tgaaaacttt aggaatttta atagcaggga aacagtttgt agtatgtggc tatggttggg
      721 taggtaaagg agtatcttca tgtcttcgag gtttgggagc cagggttact ataacggaag
      781 tggatcccat aaaagcatta gaagcccata tggatggatt taatgtgcaa agacttaaag
      841 aaactttgcc aaaaggtgat tgtttcatta catgtactgg acaaagagat gtaataacta
      901 aatacgattt tcagattctt aaaaatggcg cctttcttgc taacgctgga cattttgatg
      961 ttgaaatcga tgttgattat ttatacgcac aaaataatcc tccggtacaa atgagacctt
     1021 atgtagaatg ctttgatatt aatggaaaaa aaattaatct aattgcgaaa ggaagggtaa
     1081 taaatttagt aggaggggaa ggaaacccct cagaagtaat ggatttatct ttttcaaatc
     1141 aattgttatc gatattgtat attacaaaaa actataaaaa tttagaaaaa gatcttcatg
     1201 aagtgccgaa aaaaatagat gaaaaagttg caaaggtggc tctatcctca tttggaataa
     1261 aaattgataa acttacaaaa gaacaaattg aatatcatac taaaggttag tgttaattat
     1321 taaaaatagt tattcctata ataaaatgct actattggat ttttcaatct aattttccaa
     1381 tagcaaaaac aaaaaaattt atattgtctt ggaattaagc acagaagaat attaaaggac
     1441 acgttatcat gcaataatat aacaagtata tgaaaaaatg gtaggacatt tttttcacga
     1501 aaaaattttc attaattaac tgtaaaagtt tgcaacaaaa ctgttatact aacaattaga
     1561 tttaaacaat tttagcatta ttctttcttg cttttaatca gcaggtttat aaaattgaac
     1621 aaatacaaaa gaaacccaat atcattttat taccggaaat aaaaaatact ttcatatatt
     1681 gctctccgac actaataata ataataataa taataatatt cactacaata atcaattatc
     1741 ttcttatagt attgatagtg aagatggttt tgaagcaaat aaacctatag taattactac
     1801 tgccctgccg tatgctaatg gtgaaatcca tcttggacat atatcttcaa catatcttcc
     1861 agctgatatc tttaccagat ttttgcgaat atcaaaaaag aaggtctatc atgttggtgc
     1921 ctctgatgat tttggtactc ccattttaat taaagcagaa aaagaaaata aaacccccaa
     1981 ggaatttgtt gattactgga acaaacgtga tcgagaagat tttaatgcaa ttgggatttc
     2041 ctttgataaa ttttataaaa caagttctat cgaaaatcaa aaatttgtaa aagatgtttt
     2101 caataaattg agaagtaatg gtcatatata tgaaaaagag gttattcaat tttattgtga
     2161 ttttgataag aaatttttac ctgatagata tgttatagga atttgtcctt attgtaagtc
     2221 acaagaccaa tattcagatc tttgtgaaaa atgtggaaga gttcctgaag aaatattaga
     2281 accaaaatgt gggatttgtg gacaatcacc tataaagaaa agaagtaagc attttttttt
     2341 caaactctcc aacttttctt ttgagctaaa gaaatggcta acggataata agaaccttca
     2401 agtagacata aaaaattatg ttttacactg gattaacgaa ggattagagg actgggatat
     2461 taccagagat ttagattggg gaataaatat tccattagat gatgctaagg gaaaagtatt
     2521 ctatggttgg tttgataatc atctttgcta tatatccacc ttcaatactt taatgcaaga
     2581 aagattaggg agaaatggaa aagaaatatg gaatacttcc tctatttatc atttcattgg
     2641 aa
//
LOCUS       DATCMF010000112         2020 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_21928, whole genome shotgun sequence.
ACCESSION   DATCMF010000112 DATCMF010000000
VERSION     DATCMF010000112.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2020)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2020)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2020
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21928"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            251..1678
                     /locus_tag="VIL14_01390"
     CDS             251..1678
                     /locus_tag="VIL14_01390"
                     /inference="COORDINATES: protein motif:HMM:NF012770.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEY8522392.1"
                     /translation="MMYFFPESIQKPLDAFFRYNEINYFYNYIYYNSFLNAIKEVNKQ
                     NLKKEIQSNENILLKTWFENMDREFEEKLRSSKFMNLLDKYVNSSLNLYNDIYNGHTT
                     PQTLYHDIFDFYLKYFYSPFISYSKELNLSAHEIIFHKNNIKLLHYINNNNQQTKESE
                     NNNILLIIYAPINRFHILDLNPSKSVVRTLLNNGIDVYLLDWGYPDTKDNKLTLKDYI
                     DYIDNAVNAIIYSRSPTTSPSTPSTIKLSILGYCWGGITSLIYAATAANQKNIDKLIL
                     MATPVDFSKDDTTVSLWSKYIDNEKIIKTFGHFDGYFLDFAFNMRNPAKFFYAKYFNL
                     WKNLDNKEFINTFFDVEKWLHDTPPVPGELYKKIVNDCYKDNLLITGNMKLEEEKLSL
                     EKEEKENGNNKININKITIPVLSIIAEEDNLVSPMSSFAINDNISSKEKKIFKHPGGH
                     VSLCISDGAHKELWPKVANWIKSKL"
BASE COUNT          808 a          250 c          242 g          720 t
ORIGIN      
        1 ataaatacat tttcatttta cataataata aatataatac aataaaatat aataatcaag
       61 aatattttat gtgtctttta ttgttatatt atgttctact attcaaatgg agatattgat
      121 ttaataatga gttttatctc aaaaatgaaa aatgattgta atggatataa ataaaattta
      181 catctagatc agacctatat aaaaaaatag ttgtcaaatt ataaatatat gtaatttaag
      241 aattataaac atgatgtatt tttttcctga atctattcaa aaacccctcg atgcgttttt
      301 taggtacaat gaaattaatt atttctataa ttatatttac tataattctt tcttaaatgc
      361 tattaaagaa gtaaataaac aaaatctaaa aaaagagatt cagtcaaacg aaaatatttt
      421 gttaaagaca tggtttgaaa atatggatag agagtttgaa gaaaaattaa gatctagtaa
      481 gtttatgaat ctattagata aatatgtcaa tagtagttta aatctatata atgatattta
      541 taatggccac acaactcctc aaacactata tcatgatatt tttgactttt atctaaagta
      601 tttctattca ccattcattt cttattcaaa agaattgaat ctttctgctc atgaaataat
      661 atttcataaa aataacataa aattattaca ttatataaac aataataacc aacaaacaaa
      721 agaatctgaa aataataata tattacttat tatctatgca ccaatcaatc gttttcatat
      781 cttagatcta aatccttcaa agagcgtagt aaggactcta ttaaataatg gcattgatgt
      841 ttatctacta gattggggtt atccagatac aaaagataat aagttgacat taaaagacta
      901 tattgattat atagataatg cagttaatgc tattatatac tccagatcac ctactacatc
      961 accatcaaca ccatcaacaa taaaactatc aattttagga tattgttggg gaggaattac
     1021 ttcacttatt tatgctgcta ctgctgctaa tcaaaaaaat attgataaat taatacttat
     1081 ggctacacca gtagacttca gtaaagatga tactacagtt tctttgtggt caaaatatat
     1141 agataacgag aaaataatta agacatttgg tcactttgat ggctactttt tagattttgc
     1201 ctttaacatg cgaaatccag ctaaattttt ctatgccaaa tattttaatt tgtggaaaaa
     1261 tttagacaat aaagaattta taaatacttt ttttgatgta gaaaaatggc ttcatgatac
     1321 tcctccagtt ccaggagaat tatataaaaa aatagtaaat gattgctata aggataacct
     1381 cttaattaca gggaatatga aattagaaga ggaaaaactt agccttgaaa aggaagaaaa
     1441 agaaaatggc aataataaaa taaatatcaa taaaattact atacctgttt tatcaataat
     1501 agcagaagaa gataatctag tctcaccaat gtcttcgttt gctattaatg ataatatatc
     1561 aagtaaagaa aaaaagattt tcaaacatcc aggtggtcat gtttctcttt gtattagcga
     1621 tggagcccat aaagagttat ggcctaaagt agctaattgg ataaaatcaa aactatgaca
     1681 atataatagt aaattcttta ctacgagcaa aattattgat tgcagtttaa attgatataa
     1741 atagagtgat gatgaataga atatagattt taataatttt ctaacatttt ttatctttat
     1801 tttgatcttt ctattgcata atctttcaga aaacataatt aacttatcaa taaatttgcc
     1861 ataatatcat tagaaagata atcttattta ttaaagaaaa ttatattgtg atatgaaatc
     1921 tactttattc atattatcag tgtttccttt aatgtttttt ttttgattct cttaatgttt
     1981 gtaccaatac aacaacatgc attcccagaa actgccaagt
//
LOCUS       DATCMF010000113         1855 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_22514, whole genome shotgun sequence.
ACCESSION   DATCMF010000113 DATCMF010000000
VERSION     DATCMF010000113.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1855)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1855)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1855
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_22514"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            577..822
                     /locus_tag="VIL14_01395"
     CDS             577..822
                     /locus_tag="VIL14_01395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522393.1"
                     /translation="MRDNYGGVLKPESIIKKEARGIDNTDRGKIKEITSDCIITQKDT
                     INNDKFIIPKNLLERFHEDNILFQVTEEETETYKKTD"
     gene            complement(1062..1412)
                     /locus_tag="VIL14_01400"
     CDS             complement(1062..1412)
                     /locus_tag="VIL14_01400"
                     /inference="COORDINATES: protein motif:HMM:NF012753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030234 - enzyme regulator activity
                     [Evidence IEA];
                     GO_process: GO:0006808 - regulation of nitrogen
                     utilization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="P-II family nitrogen regulator"
                     /protein_id="HEY8522394.1"
                     /translation="MKKIEIIIPHERIDNANHILNKFGIRDEMSFYQINGSREKTEFT
                     SVPVGRSNIMYTPKYGGRTKIEALVEDALVKKLVEELLNKLTTGSVSDGKIFVYDAYE
                     VYDIGSGKKTELNI"
BASE COUNT          769 a          223 c          201 g          662 t
ORIGIN      
        1 ttttggttac aaattgaagg agtaatctca ttaacatttt tttaaaattg gtatttactt
       61 ggatattatc cttattaatt tataaaatta gtattagatg ataaaaacgg atggtgaatg
      121 atttgttaaa tctttaaagc aaggaaataa aatatagcta tagaatattt ctagatacaa
      181 gaaggaaatt ggaaaacaca cacaataaac aaaaaataaa tagttaatat ttattattga
      241 aatatgtaat aggtaaaata agtagatcac atataaattt ctagcttgtt tacataaaag
      301 taaatgcctt ttttaatagg aatattatgt tactaataca ttaactaatg tatctatttt
      361 gtgctagaaa tacaaacaga gatatatatg aaaagatact aattttatca aacaatcttg
      421 ttgaatgcct tataaatacg gtataattac tatattattt aagcaaaagg acaatattga
      481 taattgtata gtaaaaaaat aaatgtttat acatactact aattttatat atttttagaa
      541 tatattctct atatacaata gtgaactatc ataagtatga gagataatta tggtggggtt
      601 ttaaagccag aaagtattat taaaaaagaa gcaagaggca ttgataatac agatcgtggt
      661 aaaatcaaag aaattacatc tgactgtata ataacacaga aagatactat aaacaatgac
      721 aaatttatca ttccaaagaa cttactagaa cgatttcatg aagataatat attatttcaa
      781 gtaacggaag aagaaaccga aacatataag aaaactgatt agatcttttt tctattttat
      841 aaaaatcaat caattttcac atcttatata taatatagtc aggttgataa atattctttt
      901 acatgacctt gaataagtaa tttaaagaaa gtcataaatt accaataatt ctataaattt
      961 gataaaaaat caaaagataa gatcaatcaa aagaaaatac aaaaaaagaa tactgtaggc
     1021 aaaagttaca agatcattca cctctgtaag aaaaatttct tttatatatt caattcagtt
     1081 tttttaccac ttccaatatc ataaacttca taagcatcat aaacaaatat tttcccatca
     1141 gatacagaac cagttgttaa tttatttaat aattcttcaa ctaatttttt aactaaagca
     1201 tcttcaacaa gtgcttcaat tttggttctt cctccatatt ttggagtata cataatatta
     1261 cttcttccga caggtacaga tgtaaattca gttttttctc tactaccatt tatttgataa
     1321 aaagacattt catctctgat accaaattta ttcaagatat gattagcatt atcaatacgt
     1381 tcatgaggaa taataatctc aatttttttc attgtttata caaatacatt attttataat
     1441 acaattttag aaggtaagcg ataaccaaca ataaaaatac tactactata tcttactata
     1501 ttttcttaaa tttagatagc ttttcatcac ttttacttct aatcaatgtt tattatctaa
     1561 aatttgagaa tacctcatat atttacctcc taacagttat tatttgatag tagaggaatt
     1621 taatatatgg ataataaata cctaaaagaa attataaacc acagagactt attgaaagaa
     1681 attataatgt attaatcgtt tttagactta atttaaacac aattactaat ctaatattca
     1741 tttagagatg acttggcaag agaaaaattt cattatctat ctattaatta taataagtaa
     1801 tatgagtatg tgtattcaaa taaatacatc aaataaatac atttatcact atcta
//
LOCUS       DATCMF010000114         2214 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_477583, whole genome shotgun sequence.
ACCESSION   DATCMF010000114 DATCMF010000000
VERSION     DATCMF010000114.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2214)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2214)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2214
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_477583"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..985
                     /locus_tag="VIL14_01405"
     CDS             <1..985
                     /locus_tag="VIL14_01405"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEY8522395.1"
                     /translation="SNSLVSMPINLRNINIIYILFFGVVVGVVSGSLLILGSIYDDNF
                     YDAYAQDENNVTIKTTKLTDSIYMLEGSGGNILVSIGQDGVFMVDDQFAPLTVKIKDA
                     ISKITDKPIKFVINTHWHPDHTGGNENLGEAGVIIVSHDNVKKRLSTEQFSDFLNRSV
                     PPLSEKGLPIITFSDNMSIYQNDDEINIIHMDNGHTDGDSIVHFTNNNVIHVGDDFSD
                     KAYPFIDISSGGTVDGLISSLKTISSIINDKTQVVSGHTGISNKTKVNEYANMLTDVR
                     NLISQMITEGKSLEDIIASQPTSKYDKIYYDYTNRKPKDFVTHVYQSLTKK"
     gene            complement(1311..>2214)
                     /locus_tag="VIL14_01410"
     CDS             complement(1311..>2214)
                     /locus_tag="VIL14_01410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522396.1"
                     /translation="KQYNSISLSFKLLIIGSFLSLIAGPLDYLWHQNFGLDGLLSPTH
                     ITLATGMLINSVAVFIGLYGVMNNISHWKNLAKIFLIPSLCSLWFTSIWYVFIFVLPF
                     SESDFFNFNLDTYSATLIASIFLPLINSIMFLCSSKVFNNTFGYASIIVSLLVLVNTL
                     STILPTGDILSPLIPWYFVSILGASILADIVLNSNFIRINTKQFKNNKLIASSIIGAI
                     FYFFNYPMIIWTYGTFLNTDLGSLNAVLPTFLNTIVTVTLITVPVGAVMGLIGYLIFS
                     KMIENSLNALIKGRNSTTIMKSDY"
BASE COUNT          889 a          303 c          319 g          703 t
ORIGIN      
        1 atccaatagt ttagtatcta tgccaataaa ccttagaaat attaatatta tatatatatt
       61 attttttggt gttgttgttg gtgtagtaag tggatcacta ttgattttag gtagcatcta
      121 tgatgataat ttttatgatg cttatgctca agatgaaaat aatgttacaa ttaaaacaac
      181 aaaattaact gatagcatat acatgcttga aggttcagga ggaaatattc tagtctctat
      241 tggacaagat ggggtcttta tggtagatga tcaatttgct ccccttactg taaaaattaa
      301 agatgcaatt tccaagataa cagataagcc tataaaattc gtgattaata cacattggca
      361 tcctgatcat actggaggaa atgagaatct gggagaggca ggagtaatta tagtttcaca
      421 tgataatgtt aaaaaacggc tcagtacaga acaattttct gatttcctta accggtcggt
      481 tccaccattg tcagaaaaag gtcttccaat tattactttc tccgataata tgtccatcta
      541 ccaaaatgat gatgaaataa atattattca catggataat ggtcacacgg atggtgattc
      601 catagtccat tttacaaaca ataacgtaat tcatgttggt gatgacttta gcgacaaagc
      661 ctatccattc atagatatat caagtggtgg caccgtcgac ggattaattt catcgttaaa
      721 aaccatctcc tcgataatta atgataagac tcaggtggta tctggtcata ccggaatatc
      781 taacaagact aaagttaatg aatatgcaaa catgttaact gatgtacgca acctaataag
      841 tcaaatgata actgaaggca aatctttaga agatattatt gcttcacaac caacctcaaa
      901 atatgacaaa atatattatg actatactaa cagaaaacca aaagattttg taacacatgt
      961 atatcaaagt cttacaaaaa aataaaacaa ttcatcatat tttatttttt tttgaagtat
     1021 ctatgaaata actagaacca aatattgata taaaaaataa aaaattctta ttatctatta
     1081 taaaatttct aaactaacat attaataatt tattgacatg attttatcag taagcaacaa
     1141 acaagcaatg tttttgttga aaataataaa taataaataa taaataaaaa tagaaataag
     1201 cattttaaat taacttataa attattaaaa aaaattgatt gatgttgttg taattgtaac
     1261 caattaaata gttaggttaa aaatacatac attttatacc cattactatt ctagtaatct
     1321 gatttcataa tagtagtaga gtttcttcct ttaattaaag catttaaaga attttctatc
     1381 atctttgaaa atataaggta tccaattaat cccataactg ccccaacagg aactgtaatc
     1441 aaagttacag ttacaatagt atttagaaat gttggtaata cggcatttaa agatcctaaa
     1501 tcagtattta gaaaggttcc atatgtccat atgatcatag gataattaaa aaaatagaaa
     1561 attgctccaa ttatagaact tgctatcaat ttattatttt taaattgttt tgtattaatt
     1621 ctaataaagt ttgaatttaa tactatatct gcaaggatag aggctcctaa aatactaaca
     1681 aaataccagg gaataagagg agagagtata tctccagtcg gaagaatagt tgaaagagta
     1741 tttaccaata ccaataaaga aactattata gatgcatagc caaaagtatt attaaatact
     1801 ttagatgagc acagaaacat aatagagtta atgagaggaa gaaaaatact tgctatcaaa
     1861 gttgcactat atgtatctaa attaaaatta aaaaaatcag attcggaaaa tggtaaaaca
     1921 aatataaata cataccatat agaagtaaac cacaatgaac agagagaagg aataagaaaa
     1981 attttagcta aatttttcca atgtgaaata ttattcatta ctccatataa ccctataaaa
     2041 actgcaacag agttaattag cattcctgta gccaaggtaa tatgagtggg actaagcaga
     2101 ccatcgagtc cgaaattttg atgccataaa taatccaatg gacctgcaat taatgacaaa
     2161 aatgacccta ttattaataa tttaaaagaa agcgaaatag agttgtattg ttta
//
LOCUS       DATCMF010000115         3265 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_80141, whole genome shotgun sequence.
ACCESSION   DATCMF010000115 DATCMF010000000
VERSION     DATCMF010000115.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3265)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3265)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3265
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_80141"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            262..999
                     /locus_tag="VIL14_01415"
     CDS             262..999
                     /locus_tag="VIL14_01415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047294 - phosphoglycerol
                     geranylgeranyltransferase activity [Evidence IEA];
                     GO_process: GO:0006650 - glycerophospholipid metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="geranylgeranylglyceryl/heptaprenylglyceryl
                     phosphate synthase"
                     /protein_id="HEY8522397.1"
                     /translation="MNTIETYILNEIKRYRTLCFPLIDSENPNDIISIAKKVEQLGAS
                     AILIGGSSIIDQIELSNIISQIKANITIPVILFPGNVTGVSPNADAILFMSLLNSENP
                     YFITGAQALAAIGVKKSHLEALPTGYLIIGEGTTAWFVGQAKGIPFDKPNLAIMYSLA
                     AQYLGMRFLYLEAGSGANQHISPVMVKAVRRYYEGVLIVGGGIRDSKIAKHLADAGAD
                     IIVVGTMIENDNNWEKKFSEIIQLIRK"
     gene            996..>3265
                     /locus_tag="VIL14_01420"
     CDS             996..>3265
                     /locus_tag="VIL14_01420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase II large subunit"
                     /protein_id="HEY8522398.1"
                     /translation="MNVNYNLLDENSLQELSSLKRPSFYHNYHNNLLNFLNEIYLIAS
                     DARLQGIDVSEKIESRIVYDLADRVAKMHDINITNRLRNLLSETTKEKAALKISEEIA
                     QGKYSDDDLTTRLDNAVRVSLAIVTEGVTVAPLQGISDVQIKNNSDGSQYLSISFAGP
                     IRSAGGTEAALTMLIADHVRKSVGLSKYQANSFDDETGRFVEELRIYEREVGSFQFKI
                     LDEDVIKCISNLPVELDGVDTDPVEIVGHRAMKRIKTDRVRGGALRVMNDGLIGRSRK
                     LLKIIDTLELDGWDWLNELKGAIQKEGSSEDDTIHHRMSEVITGRPVLSMSNKIGGFR
                     LRYGRCYNTGFSTIGIHPTVPILLNYAIVVGTQIKIDIPGKAATIALVDSIEPPLVKL
                     DDGTVTYVTSIEYAHQIQNRIVTILYLGDILVSYGDFLENNAKLFPASYVEEIWGLEL
                     QIKIKQISSNNSYSTDKKYTNEILEYIDKQRLLELANNPIEIIPTLKEAFLISKILSI
                     PLHPKYSFYWESISVDEIILLRNEFLKKSDMDKNVDLIFNITKDTTNQYYFESFSIEY
                     NKTLKDILERLGITHSVKNDNNNLLIIELSELNQINSLFILLCNTSINNESSNNISSI
                     DYIMRISGLLLKPKFSSSIAVRVGRPEKAAERKMKPPVHVLFPVGSKGGSTRDLIKAS
                     KEEILYTEIANRYCKTCTLPSVGTKCRTCLSETPLHNICVLCRELINSENNSSKKEIN
                     TRCTKCRREGKTYSPS"
BASE COUNT         1241 a          434 c          550 g         1040 t
ORIGIN      
        1 tcttagtaaa taaatttttt tcaataagtg cgttaaaaaa atcgttaaat tctaaatcta
       61 tattgttctc ggtactatac atatttgtat ggtacaagat tcttataaaa aggttagatt
      121 atttttatac aattactagc agtataaatt ctatcaattt tttaggccct aactttatgc
      181 atccaggatt taaaaattca agaaaacaaa accaaaaata ttttttagga gttaatatac
      241 tttaatatgg ttccacagta attgaatact atagaaactt atattttaaa tgagataaaa
      301 cgatatcgta ctttatgttt tccattaatt gattcagaaa atccaaatga tattatttca
      361 atagcaaaaa aagttgaaca attaggtgca tcagcaattt taattggtgg ttcctctata
      421 atagatcaaa ttgaattatc caatataata tcacaaataa aagcaaatat cacgattcct
      481 gtgatattat ttcctggaaa tgtcactgga gtctcaccta atgctgatgc tatattattt
      541 atgtcattac tcaattctga aaatccatat tttattacag gagcccaagc attagcagct
      601 attggggtta agaaatccca cttagaagca ttacctaccg gatacttgat aattggtgaa
      661 ggaacaactg catggtttgt aggccaagca aagggtattc cttttgataa acctaatttg
      721 gcaataatgt attcactggc agcacaatac cttggaatgc gattcttgta tctcgaggct
      781 ggttcaggag ccaaccaaca tatctcccca gtaatggtga aagcagtgcg tagatactat
      841 gaaggtgtat taattgtagg tggaggcatt agagactcta aaattgccaa acacttagct
      901 gatgctggtg ctgatattat agttgtggga acaatgattg aaaatgataa taattgggaa
      961 aagaaatttt ccgagatcat tcaattaata aggaaatgaa tgttaattat aatcttttag
     1021 atgaaaactc acttcaagag ttaagtagtt taaaaagacc ttctttttat cataattacc
     1081 ataataatct cttaaacttc ttaaatgaaa tttatctaat agccagtgat gcacggttac
     1141 aaggtattga tgtttctgaa aaaattgagt caagaatagt ctatgattta gctgatagag
     1201 ttgctaaaat gcacgatatt aatattacaa atagattaag aaatttatta tctgaaacaa
     1261 ctaaagaaaa ggcagcatta aagatatcag aagaaattgc acaaggtaaa tacagcgatg
     1321 atgacttgac aactagatta gataatgcag ttagggtaag tcttgctata gtaacagaag
     1381 gggtaactgt tgcaccttta caaggtattt cagatgtaca aatcaagaat aattctgatg
     1441 gaagtcaata tctttcaata tcatttgcag gacccattag atctgctgga ggaaccgaag
     1501 cagccttaac aatgcttatt gcagaccatg taagaaagtc agttggatta agtaaatatc
     1561 aggccaattc ttttgatgat gaaacaggtc gatttgtcga ggaattacgt atatatgaaa
     1621 gagaagttgg aagttttcaa tttaaaattt tagatgagga tgtgataaaa tgtattagta
     1681 atttaccagt tgaattagac ggggtagata ctgatcctgt agaaattgtc ggccatagag
     1741 caatgaaaag gattaagaca gatagagtcc gtggtggtgc tttaagagtt atgaatgatg
     1801 gtttaattgg aagaagtaga aaattattaa aaataataga tactttagaa ctagatggat
     1861 gggattggct taatgaactt aagggagcaa tacagaaaga aggctctagt gaagacgata
     1921 caatacacca tagaatgtca gaagtaataa ctggcagacc agttttgtca atgtctaata
     1981 aaattggtgg atttaggtta agatatggta gatgctataa tacaggattt tccacaatag
     2041 gaattcatcc aactgttcct atattattaa attatgcaat agtagtagga actcaaatta
     2101 aaattgatat tcctgggaaa gccgcaacaa tcgcattagt tgattcaata gaacctcctt
     2161 tagtcaaact agacgacgga actgtaacat atgtgacatc tatagaatat gctcaccaaa
     2221 ttcaaaatag aattgttact atcctttatt tgggagatat tttagttagt tatggtgatt
     2281 tcttagaaaa taatgcaaaa ttatttcctg catcctatgt tgaggagata tggggattag
     2341 aattacaaat taaaataaag cagatttctt caaataatag ttattccact gataagaaat
     2401 atactaatga aattttagaa tatattgaca aacaacgatt attggaatta gcaaataatc
     2461 ctattgaaat aattccaaca ctgaaagaag cattcttaat tagtaaaata ttgagtattc
     2521 ctttacatcc taaatattct ttctattggg aatcaatatc agtggatgaa attattttat
     2581 taagaaatga attcttaaaa aaatcagaca tggacaagaa tgttgattta atttttaata
     2641 ttacaaaaga cacgacaaat cagtattatt ttgaatcatt ttcaattgaa tataataaaa
     2701 cattaaaaga tatactagaa cgtttaggta taacacattc agtaaaaaat gataataata
     2761 acctattaat aatagaattg tcagaattaa atcaaataaa ctctttgttt attttacttt
     2821 gtaatacgtc aataaataat gaatcatcaa ataatatttc ttcaattgat tatataatga
     2881 gaatatctgg ccttttacta aaaccaaaat tttcttcatc aatagctgta cgtgttggac
     2941 ggccagaaaa agcagccgaa agaaaaatga agccgccagt tcatgtctta tttccagtag
     3001 gaagtaaagg aggttctaca cgagatttaa ttaaagcatc aaaagaagaa attctttata
     3061 cagaaatagc taatagatat tgtaaaactt gtactctacc atcagttggt actaaatgta
     3121 gaacatgttt atctgagaca cctctccata atatttgtgt actgtgtaga gaactaatta
     3181 attcagaaaa taatagtagt aaaaaagaaa taaatactag atgtactaaa tgccgaaggg
     3241 aaggaaaaac atattctcca tctaa
//
LOCUS       DATCMF010000116         2149 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_345860, whole genome shotgun sequence.
ACCESSION   DATCMF010000116 DATCMF010000000
VERSION     DATCMF010000116.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2149)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2149)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2149
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_345860"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1243
                     /locus_tag="VIL14_01425"
     CDS             <1..1243
                     /locus_tag="VIL14_01425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="electron transfer flavoprotein"
                     /protein_id="HEY8522399.1"
                     /translation="LTNSNEGAAYLFAGDVSLNLIGGGFVYTNRDSLSIGGVYHYDSL
                     LENPIEPAEIVNAMLRNPLISELIKDDVPLKEIDKTLPKEEQVRKSFAVTKLLNNWNE
                     LRQLYYSHKLKKKSIEDRKYNSEEEIKSKLDNLTQKLTDEYHTKFMTNYIELEYTTKL
                     VPDGKRGRMKKPYHKNILFIGDAAGRGLFIGPRIEGLNVGIDDAARASIAIARSLDKN
                     NFGTDYLGEFYTQSIEQSPYSVDMKEIDKQYLSVILNSTRNKISSDALGLKHKLLFNF
                     ISNDGVRNFFITLINKYGYTRLLSLIESGDVYFKIPIKIADKLGTVKSSTYVPQIPTV
                     QDRVAKLCYHEDTISHIKILNSGQNFLKKMVTLCPTKCYSLEGNDVILQHEGCIECGT
                     CSKETEWRHPRGEKGVVFKYG"
     gene            complement(1509..1814)
                     /locus_tag="VIL14_01430"
     CDS             complement(1509..1814)
                     /locus_tag="VIL14_01430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522400.1"
                     /translation="MGDSKKEIRIKSFQTQLFDDLIDQVNVWLGYKQDKTRNSFKFID
                     LKYYYRDSPSSDNDFQHSAIVIYQDSQDNFSKEKTEKSNTTNDEEFIAEKKKLEYRK"
BASE COUNT          749 a          289 c          320 g          791 t
ORIGIN      
        1 tctaaccaac tcgaacgaag gagccgctta cctttttgca ggagacgtat cattgaatct
       61 tattggtggt ggatttgttt atactaacag agactcactt tcaattggag gggtttatca
      121 ttatgattct ttactagaaa atccaataga acctgcagaa attgtgaatg caatgctaag
      181 aaatccgctg atcagtgaat taataaaaga cgacgtccct ttaaaagaga tagataaaac
      241 tctcccaaaa gaggaacaag taagaaagtc ctttgcagtt acaaagttac taaataactg
      301 gaatgaatta aggcaacttt attattctca taaattaaag aagaaatcca tcgaagatag
      361 aaaatacaat tcggaggaag aaataaaatc aaagctcgat aatttgactc aaaagcttac
      421 tgatgaatat catactaaat ttatgactaa ttatatagaa cttgaataca ctaccaaatt
      481 agtcccagac ggtaaacgag gaaggatgaa aaaaccctat cataaaaata tattattcat
      541 tggtgatgcc gctggtcgtg gtctattcat tggaccacga atagaaggat taaatgtagg
      601 aatagatgat gcagctagag cttccattgc tattgctaga tctttagata aaaataattt
      661 tggaactgat tatttaggtg agttttatac tcagtcgata gaacaaagtc cgtatagtgt
      721 tgatatgaaa gaaattgata aacaatatct tagtgtaatt ttaaatagta caagaaataa
      781 aatatcatct gatgctttgg gattaaaaca taaactactt tttaatttta tatctaatga
      841 cggtgtaagg aattttttta ttacattgat taataaatat ggatatacac gtttactttc
      901 attaattgaa tctggagacg tatactttaa aatccctatt aaaatagctg acaagttagg
      961 aacagtaaag tcgtctactt atgttccaca aataccaacg gttcaagata gagttgcaaa
     1021 attatgttac catgaagata caatatctca tataaaaatc ctaaattctg gccaaaattt
     1081 tcttaaaaaa atggtaacac tttgcccaac aaaatgttac agtttagagg gtaatgatgt
     1141 tatattacaa catgagggct gtattgaatg tggtacttgt tcgaaagaaa ctgaatggag
     1201 gcatcctcga ggggaaaaag gtgtagtatt taaatacggc taatttttta ccgaatttta
     1261 tttatgataa cctatcatat tatataacca attatttcct acttaaggtt tattgttatt
     1321 agtgcaaatt tgtttggttt ataccgaagc aacatctaag aagattattt ttttatagga
     1381 attttattat taatatagta gtagtaatat ataaaacaaa ttcactcctc cacaatttta
     1441 tacatattac aagctcaatt tagttgttgt atgatatttt ttattcagta ttatttattg
     1501 tccaatattt atttgcgata ttctaatttc tttttttctg caataaattc ttcatcattg
     1561 gttgtattac ttttctcggt tttttcttta gaaaaattat cttgggaatc ttgataaatt
     1621 actattgcag aatgctgaaa gtcattatct gaagatggag aatctctata gtaatatttc
     1681 agatcaataa atttaaatga atttctagtt ttatcttgct tgtaacctaa ccatacattt
     1741 acttgatcta tcaagtcatc aaataattgt gtttgaaaag atttaatcct aatctctttt
     1801 tttgaatctc ccatttctaa atacctctcc ttttattaat agaatattga ttcttgttta
     1861 tgaatttttt ctgatatctt tttttattag aatttaatat ttgatttaga ttatttgtgg
     1921 tatacaactt tttttcattt atatattaaa ttatcatttt tcttatagtt cataatattt
     1981 tggtaaaggg atgaactcaa ttattggatg ataaatttct aattaaaaat cactcctagt
     2041 aattatatca aaaataaaac tagattactt gtttaacttg ttatctctgc tgctgttgtt
     2101 ttatgtactt ctagattagt ttcatctacc tttatggctt gagttggac
//
LOCUS       DATCMF010000117         1742 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_345991, whole genome shotgun sequence.
ACCESSION   DATCMF010000117 DATCMF010000000
VERSION     DATCMF010000117.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1742)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1742)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1742
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_345991"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(142..230)
                     /locus_tag="VIL14_01435"
     tRNA            complement(join(142..177,193..230))
                     /locus_tag="VIL14_01435"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(194..196),aa:Lys,seq:ttt)
     gene            520..1413
                     /gene="uvsE"
                     /locus_tag="VIL14_01440"
     CDS             520..1413
                     /gene="uvsE"
                     /locus_tag="VIL14_01440"
                     /inference="COORDINATES: protein motif:HMM:TIGR00629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0009650 - UV protection [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UV DNA damage repair endonuclease UvsE"
                     /protein_id="HEY8522401.1"
                     /translation="MKIGYPCINYSIGKKTVSTFRLSSYTEEKFIQCVNYNLAVLVEI
                     LKFNIANNLMFFRISSDVIPFASHPICKFDWKEYFKSDFIKIGQLIKHNNIRISMHPD
                     QFVIINAKSQEIVNNSIRELEYHIDLLDLMELDYSSKVQIHIGGVYGDKEKSKKQFIS
                     NYKTLLSENIKNRLVIENDDHLYHLKDCMEIHEYIGIPILFDVFHHLCFDNNLPLNIA
                     LQISSNTWNRNKDGIMMIDYSNQELNQRKGKHSHTLDIKQFEKFIISVSNLNLDIMLE
                     IKDKEKSAKKAIEVINKINGI"
BASE COUNT          673 a          214 c          231 g          624 t
ORIGIN      
        1 aatcaaaaag attgttgcaa attatattat tcttgtcttt tctcctacaa gattgtcaaa
       61 tttagtaaat tatggataag aaaggatgaa tatctaaact tgattcaaaa tactatcaaa
      121 tatagtgaac cctagaaact acgggcccgt cgggagttga acccgagaca gccggatttc
      181 ttccattaga gttaaaagtc cggtactcta cctggctgag ctacgggccc ataaggtaat
      241 tacgattcag tgtagtgtgt attcctcact ataaatatta atctgatcat tgactgtaat
      301 taaattatcc cgtcaaaatt cacagtatta gtaataaaaa taaaataaac tttttacatt
      361 caaaaggtaa atattattat tatttaatct ttagttaaaa tttatgaaga aaatttacaa
      421 ttgtactctt ttgtatttat agctctttct aattcttgaa actattttat attttacttt
      481 atataaagta aaagaattcg gaatgatgtt aaatacaaca tgaaaatagg atatccttgt
      541 ataaattact caattggaaa aaaaactgta tccacattta gactgtcctc gtataccgaa
      601 gaaaaattta tccaatgtgt aaattataac cttgctgttc ttgttgaaat cttaaaattt
      661 aatatagcaa ataatttgat gttctttaga ataagttcag atgtgattcc ttttgcatct
      721 catccaattt gtaaatttga ttggaaagag tattttaaat ccgattttat taaaattggg
      781 caactaataa aacataacaa tataagaata tctatgcatc cagatcaatt tgttattatt
      841 aatgctaaaa gtcaagaaat tgttaataat agtattagag aacttgaata tcatatagat
      901 cttttggatt taatggaact tgattattca tccaaggtcc agatacatat tggaggtgtt
      961 tatggagata aagaaaagtc gaagaaacaa tttatttcta attataaaac tttactatca
     1021 gaaaatataa aaaacagatt agttattgaa aatgatgatc atctatacca tttaaaagac
     1081 tgtatggaaa tacatgaata tatcggcata ccaattcttt ttgatgtatt tcatcatcta
     1141 tgttttgaca ataatttacc tctaaatatt gctctacaaa tatctagtaa tacgtggaat
     1201 cgtaataaag atggcataat gatgattgat tatagtaatc aagaacttaa ccaaagaaaa
     1261 gggaaacatt ctcatacttt agatataaaa caattcgaga aatttattat ctcagtttct
     1321 aatctgaatt tggatattat gttagaaata aaagacaaag aaaaaagtgc taaaaaagca
     1381 attgaagtaa taaacaaaat taatggcatt taagagcaac agctaatttg aattatcaat
     1441 tatatttata attctattta ttttagtttt ttctataaaa tttgataaac tttcataaat
     1501 attgatatat tttaattgtc catatttaat tttaacagag ttataattga attaaacctc
     1561 ttcgtctcaa caatagaact aattgtatgg ggtcgaaaaa tatgtattgt taaaatatat
     1621 tctatgcata tcaatgatgt acaaagtcaa ttaacttagt aattctagcg tttctatgaa
     1681 aaaatttttt agccgaatta ttgagtctta tatataaaca tatgattagt tcaaaattta
     1741 ga
//
LOCUS       DATCMF010000118         4097 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_544076, whole genome shotgun sequence.
ACCESSION   DATCMF010000118 DATCMF010000000
VERSION     DATCMF010000118.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4097)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4097)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4097
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_544076"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..294
                     /locus_tag="VIL14_01445"
     CDS             <1..294
                     /locus_tag="VIL14_01445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522402.1"
                     /translation="LGIIPAEISDIFPASHNIISVENDSQSFAANYSTFIDAMKFFLK
                     VNQDKNIIIIANEFMKQIIYYFYSQENIIEIFNSRIKIVDYRENIICEISEIQ"
     gene            complement(335..937)
                     /gene="leuD"
                     /locus_tag="VIL14_01450"
     CDS             complement(335..937)
                     /gene="leuD"
                     /locus_tag="VIL14_01450"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HEY8522403.1"
                     /translation="MEPFQNFESKATPFPYVNVDTDQIIPKQFLKLTQKIGFGKYLFY
                     DWRYNKNGEPKKDFVLNNPRYSKYPILLTLDNFGSGSSREHAVWAIMDYGFRVIISPS
                     FADIFYSNCIKNGILPIILPKKEIEYLFDNPDCIIKVDLNKQQIELKPISRELKFQID
                     PSKKKMLLEGLDEIGMTLQLESHISDYENKVHTDFNINLV"
     gene            complement(968..2407)
                     /gene="leuC"
                     /locus_tag="VIL14_01455"
     CDS             complement(968..2407)
                     /gene="leuC"
                     /locus_tag="VIL14_01455"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HEY8522404.1"
                     /translation="MSHTIFEKIWDNHIVYPNSKSINESINPDSYLLYIDRHLIHEVT
                     SPQAFDGLRTNNRKVRRPDLTFATMDHNVPTTNRSLPIVDQISARQINTLVENCKEFG
                     IRLFDLDSPNQGIVHVIGPELGITLPGATIVCGDSHTSTHGAFGAFAFGIGTSEVEHV
                     LATQCLWLTKPKTMEVNFFGKPKNSLAVSAKDIILALIRKIGIGGGSGAVVEYRGDII
                     KKFSMEKRMTMCNMSIEAGARAGLIAPDEITFEYIRNREYSPKGEKFEKMVTYWKENL
                     KTDNNSIFDKKVEVNISNLSPQVSWGTNPSMVVDVTGIIPYADEYAMGNEDEKKAAIR
                     ALEYMNLKSGTPITDICIDRVFIGSCTNSRLEDLIEASVIVKGRKVSPKVHAMVVPGS
                     QSVKLKAEKLGLDKIFIESGFEWRESGCSMCLGMNPDILSSGERCASTSNRNFEGRQG
                     VGGRTHLVSPVMAAAAAIEGHFVDVREWI"
     gene            2505..3164
                     /gene="psmB"
                     /locus_tag="VIL14_01460"
     CDS             2505..3164
                     /gene="psmB"
                     /locus_tag="VIL14_01460"
                     /EC_number="3.4.25.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000502 - proteasome complex [Evidence
                     IEA];
                     GO_function: GO:0004175 - endopeptidase activity [Evidence
                     IEA];
                     GO_process: GO:0010498 - proteasomal protein catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="archaeal proteasome endopeptidase complex
                     subunit beta"
                     /protein_id="HEY8522405.1"
                     /translation="MHVQDNRYSEYIANQIKKGTTTCALSCSDGVVLAADTRASAGMF
                     IADRRVMKIQKVDNHLGMTIAGGVADAQNLVDTMRYNANLYRISNKRIIPVQSAARLC
                     SNILFNQRYFPYYVQIIMAGYEGKGTGQIYNIDLFGSLTEEKFISTGSGSPVAYGYLE
                     SEFKENMSVDEAYKVALQAIAAAIRRNAGTGDGINVVIIDKNGYRELSKEVKEAVKVV
                     F"
     gene            complement(3172..>4097)
                     /locus_tag="VIL14_01465"
     CDS             complement(3172..>4097)
                     /locus_tag="VIL14_01465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008641 - ubiquitin-like modifier
                     activating enzyme activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="HesA/MoeB/ThiF family protein"
                     /protein_id="HEY8522406.1"
                     /translation="GKIRIVDRDVVEISNLHRQHLYTEQDIGKVKVEAAIEHLKRRNT
                     DVEIEALPISITTYNAENIVKGFDVVIDALDSIDARYALNDACIKQHIPLIYAGALGM
                     LGSVCTILPNQSACLRCIFPALSEDDMPTCSTEGVHPSILYLVGGIQVSEAIKILLGQ
                     KPSLVNTLLYIDLNELSFERIKMLRHDECSACGKEKIIKEIQPEKELIIEELCGRDRG
                     KRTYTVTPSKITSIVNLNKVINNAELLGYNIKSRGSLGITVTTNNSNPSQQLSISFMT
                     SGTATIVGAKDENDALSIYNEFLNFKISNKK"
BASE COUNT         1357 a          685 c          591 g         1464 t
ORIGIN      
        1 ttaggaatta ttcctgctga gatatcagat atatttccag catcacacaa tatcatatcg
       61 gtagaaaatg attctcaaag ttttgcagca aattattcga cattcattga tgcaatgaag
      121 ttttttttaa aagttaacca ggataaaaat ataataatta tagcaaatga atttatgaaa
      181 caaattattt attattttta tagtcaagaa aatattattg aaatttttaa ctcaagaatc
      241 aaaatagtag attacagaga aaatatcata tgtgaaatat cggagataca ataagatctt
      301 ttaaattaaa taaatttact ctttggcaga acatttatac taaatttata ttaaaatctg
      361 tatgtacttt attttcataa tctgaaatat gtgattctag ttgcaatgtc attccaattt
      421 catctaaacc ttctaataac atctttttct tagacgggtc tatttgaaat tttaattctc
      481 ttgaaattgg ttttaattct atctgttgtt tatttaaatc tactttaata atacaatcag
      541 gattatcaaa aagatattct atctcttttt ttggcaatat tattggtaat ataccattct
      601 ttatacagtt actatagaaa atatcagcaa atgaaggaga aataataact ctaaaaccat
      661 aatccattat tgcccatact gcatgttctc tagaacttcc acttccaaaa ttatctaatg
      721 taagaagaat aggatacttt gagtatcggg ggttgtttaa tacgaagtcc tttttaggtt
      781 caccattctt attgtaacgc caatcataaa ataagtattt tccaaatccg attttttgtg
      841 ttaatttaag aaattgtttt gggattatct gatctgtatc aacattaaca tatggaaaag
      901 gtgttgcttt actttcaaaa ttttgaaatg gttccataat aattgattta gaggatatat
      961 tgaatattta tatccattct cgaacatcaa caaaatgtcc ttctatcgct gctgctgctg
     1021 ccataactgg acttaccaaa tgagttctac ctccaactcc ttgccttcct tcaaagtttc
     1081 gatttgatgt actagcacac ctttcccccg aggaaagaat atccggattc atccccaaac
     1141 acatactgca tccagattct ctccattcaa atccactctc tataaagatt ttatctaatc
     1201 ctaatttttc tgcttttaac ttgaccgatt gagatcctgg tacaaccata gcatgaactt
     1261 ttggtgaaac ttttcttcct tttacaataa cagatgcttc aataagatct tctaatctag
     1321 aatttgtaca tgaacctata aacactcgat caatacagat atcagtaatt ggagtacctg
     1381 attttaaatt catatattca agtgctcgga tagcagcctt tttttcatct tcattaccca
     1441 tagcgtattc atcagcatat ggaattatgc cagtcacatc aacaaccatt gaaggatttg
     1501 ttccccaact cacttgtgga gaaagatttg atatatttac ttctactttt ttatcaaaaa
     1561 tagaattatt atcagttttc aaattctctt tccaatatgt aaccattttt tcaaactttt
     1621 cgcccttagg ggagtattct cgattacgta tatattcaaa ggttatttca tcaggagcaa
     1681 ttaatcctgc tctagctccg gcttctattg acatattaca catggtcatc cttttttcca
     1741 ttgaaaattt ctttataata tcaccacggt attcaactac tgctccacta cctccaccta
     1801 tacctatttt acgaatgagt gctaatataa tatctttagc tgatactgcc agtgaatttt
     1861 ttggtttacc gaaaaaattt acttccatgg tttttggttt agttagccaa aggcattgag
     1921 ttgcaagtac atgttctact tcactagtac caattccgaa agcaaaggct ccaaaagctc
     1981 catgcgtaga agtatgacta tctccacaaa ctatagtagc gcctggaagg gttattccta
     2041 gttcaggacc tataacatga acgatacctt gattaggact atccaaatca aataaacgta
     2101 taccaaattc tttacagttt tctactaatg tattaatctg cctagcagag atttgatcaa
     2161 ctattggaag acttctgttt gtagtaggaa cattatggtc catagtagca aaagtcaaat
     2221 ccggtcttct aacttttcta ttatttgttc ttagaccatc aaatgcctgt ggtgatgtaa
     2281 cttcatggat caagtgtcga tctatataaa gtaaatatga atcaggattt atcgattcgt
     2341 taatactttt agaatttgga tatactatat gattatccca aattttttca aagatagtat
     2401 gtgacattat gttatatatt atataatagt aaaatataat catataacat cctaacgaat
     2461 gaaaaaatac ttatgtagta ttgaactgat taactttgat taagatgcac gtacaagata
     2521 atagatattc tgagtatata gcaaatcaga ttaaaaaagg aacaactact tgtgctcttt
     2581 catgttcaga tggtgttgta ttagctgctg atactcgtgc cagtgcgggt atgtttatag
     2641 ctgataggcg tgtaatgaaa attcaaaaag ttgataacca tttaggaatg actattgcag
     2701 gaggagtagc tgatgctcag aatcttgtag atacaatgcg atataatgca aacttatata
     2761 gaatatctaa caaaaggatc attccagttc aatcagctgc cagattatgt tccaatattt
     2821 tgtttaatca aagatatttt ccatattacg ttcagattat catggcagga tacgaaggta
     2881 agggtactgg tcagatttat aatattgatt tgtttggatc attaactgaa gaaaaattta
     2941 tttctacagg tagcggatct cctgtagctt atggttactt agaaagtgaa tttaaagaaa
     3001 atatgagtgt agatgaagca tataaagtag ctttgcaagc gatagccgca gcaattagaa
     3061 gaaatgctgg taccggagat ggaataaatg ttgttataat agataaaaac ggctatagag
     3121 aactatcgaa agaagtaaaa gaggctgtta aagtagtatt ctaaaaatac tttatttttt
     3181 attactaatt ttaaaattta aaaattcatt ataaatagaa agtgcatcat tctcgtcttt
     3241 tgctcctact atagttgctg tgccactagt cataaagctt atagatagtt gttgtgatgg
     3301 attactatta ttagtcgtta cagttattcc caaagaccct ctagatttta tattatatcc
     3361 taataattct gcattgttta ttactttatt taaatttact atagaagtta tttttgaggg
     3421 tgtcacagta taagttcttt tacctctatc tctaccacat agttcttcaa taataagttc
     3481 tttttctggc tgtatttctt ttattatttt ttcttttcca catgctgagc attcatcatg
     3541 ccttaacatt ttaatgcgct caaatgatag ctcatttaaa tcaatatata ataaagtatt
     3601 taccaatgaa ggtttttgtc ccaacaatat ttttatcgct tcagatactt ggataccacc
     3661 aaccaaatac aaaatagaag gatgaacacc ttctgtacta catgtcggca tatcatcctc
     3721 cgataaagca ggaaatatac aacgaagaca tgcagattga tttggaagaa ttgtgcatac
     3781 tgaaccaagc attcctaatg caccagcata aatgagtgga atatgttgtt taatacaggc
     3841 atcgtttaaa gcatatcttg catcaatact atcaagtgca tctataacaa catcaaatcc
     3901 tttcactata ttttctgcat tataagtagt aattgaaata ggaagcgctt caatttctac
     3961 atccgtattc cttcttttca aatgttctat tgctgcttca actttaactt ttccaatatc
     4021 ttgttcagta tacaaatgtt gtcgatgtaa attagatatt tcaactacat ctctatctac
     4081 aatacggatc tttccaa
//
LOCUS       DATCMF010000119         2506 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_213228, whole genome shotgun sequence.
ACCESSION   DATCMF010000119 DATCMF010000000
VERSION     DATCMF010000119.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2506)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2506)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2506
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_213228"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            272..673
                     /gene="mce"
                     /locus_tag="VIL14_01470"
     CDS             272..673
                     /gene="mce"
                     /locus_tag="VIL14_01470"
                     /EC_number="5.1.99.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA epimerase"
                     /protein_id="HEY8522407.1"
                     /translation="MRVDHIAIAVKNVEEALKNYQNILNIDKIEIEDVPSEKVRVVML
                     NLEDTRIELLEPTAENSPISKFLNEKGEGIHHIAITADNIEEDVARGQKKGMRFLGEI
                     RTGSYGRKITFIHPKSLNGVLTEFCQSSPGK"
     gene            complement(778..1800)
                     /locus_tag="VIL14_01475"
     CDS             complement(778..1800)
                     /locus_tag="VIL14_01475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate/isopropylmalate dehydrogenase family
                     protein"
                     /protein_id="HEY8522408.1"
                     /translation="MTKYNIALIPGDGIGPELMSSAKMLLESINDKTSVKFSLNEVDA
                     GDYALSKFGQALPDFTLDAIKKSDACLKAPVGESAADVIIVLRRLFDLYANIRPAKSF
                     PNIKSISENVDLVTVRENTEDVYLGWEFYANADTVVALRVISEKASRRIAEYAFKTAL
                     RRDEKKKVVSVHKANVLRKSDGLFKNICREVSTKFPQIEYSELYVDACAMNLIRNPES
                     FDVIVTTNLFGDILSDEAAQVVGGLGMGPAGNIGENFSLFEPVHGAAFDIAGKNIANP
                     SSIFLSIKMMLDWLGEKFKDPLLFTEAIKIENAIVTLLKQNYKTIDIGGNLSTSEFTR
                     MLLDIL"
     gene            complement(1907..>2506)
                     /locus_tag="VIL14_01480"
     CDS             complement(1907..>2506)
                     /locus_tag="VIL14_01480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016866 - intramolecular transferase
                     activity [Evidence IEA];
                     GO_function: GO:0031419 - cobalamin binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA mutase family protein"
                     /protein_id="HEY8522409.1"
                     /translation="QSLHTNSKDEALALPTEESVKIALRTQQMIATETGVTKTVDPLG
                     GSYYVEFLTNKIEDEVDKYLKRIDRIGGALSAVEKGFFQDEIRQNAYSLKKEIDEQKR
                     IIVGVNKFQDQHDVEPLLNVMDPEIEKKQIARLNQLRLKRDKNKVDHAIELLVKNAEK
                     DNQNLMPHIINAVKNRVTLGEISDAFQSVFGKYEPRISF"
BASE COUNT          815 a          437 c          364 g          890 t
ORIGIN      
        1 tactataata tctaattctt aggcttgaaa atcaatgtgt ctaagaactg gtccaaaact
       61 taaatttcat tctaacattg aatataacgt tattaaatct gtattatata ttattctatt
      121 gtaatagaaa tagcttgaca atttgttgta tcttttcttt gcctacagag ttcctggact
      181 gcaaatttga ttttttattc tcgaattata tagaaataat aactctaatt agaaaattaa
      241 tatatccata tgtcatcttc tttggtgaaa gatgagagta gatcatatag ctattgcagt
      301 taaaaatgtt gaggaagcat taaaaaatta ccaaaatatt cttaacatag ataaaataga
      361 gatagaagac gtacctagtg aaaaggttcg tgtagtaatg ctcaatttag aagacacacg
      421 tatagaactc ctagaaccga ctgctgagaa tagtcctatt tctaaattcc taaatgaaaa
      481 aggagagggg atacatcata ttgccataac tgctgacaat atagaagaag acgttgctag
      541 aggacagaaa aaagggatga gatttctggg tgaaatcaga actggatctt atggtcgtaa
      601 aataacattt attcatccta aatcattaaa tggagtatta acagaatttt gtcaatcgtc
      661 accaggcaaa taaaattttt cttcatatta taatataata actttgatct cattctatgt
      721 tggcaatata agagcatgca gaattaagaa cagcatagac tataaaaata atgatagtta
      781 caagatatcc aataacattc tagtaaattc actcgttgat aggtttcctc caatgtctat
      841 cgtcttataa ttttgtttta agagggtaac aattgcgttt tctattttaa ttgcctcagt
      901 aaataacaat ggatctttaa atttttctcc tagccaatct aacatcatct ttatactaag
      961 aaatatagag gaaggattag caatattttt tccggcaata tcaaaagcag caccatgtac
     1021 tggttcaaac aatgaaaaat tttcacctat gttacctgct gggcccattc ctaatcctcc
     1081 aacgacctgt gctgcttcat cagaaagaat atcaccaaaa agattagtag taacaataac
     1141 atcaaaactt tcggggtttc ttattaaatt catagcacaa gcgtcaacat atagctcact
     1201 atactctatt tgaggaaatt tggtagatac ttctctacaa atattcttaa ataatccgtc
     1261 actctttctc agcacattgg ctttatgaac ggatacaacc ttcttctttt catctcgcct
     1321 cagggcagtt ttaaaggcat attctgcaat tcttctagaa gctttttctg atataactct
     1381 aagagcaaca actgtatctg cattagcata gaattcccat cctaaatata catcctcagt
     1441 attttctcgg acagtaacta aatctacatt ttccgaaatg gatttaatgt taggaaaaga
     1501 tttagcaggt cttatatttg catagagatc aaaaagtcgt cttaatacta taataacatc
     1561 tgccgcactt tcccctacag gcgcttttaa gcatgcatca cttttcttga ttgcatcaag
     1621 tgtaaaatca ggtaaagctt gaccaaattt ggataatgca taatctcctg catcgacttc
     1681 gttaagactg aatttaaccg atgtcttatc gtttatggat tccagaagca ttttagcact
     1741 agacattaat tctggtccaa ttccatctcc aggaatcaat gctatattat atttcgtcat
     1801 caaaggtaaa tactgatata attgttttaa aaattgtttc cttaaattta ttgagtcatc
     1861 attttttaca agattaaagc agacgataaa aaactattgt agagaattag aatgagatcc
     1921 ttggctcata ctttccaaat accgattgaa aagcatcgct aatttcacct agggtaactc
     1981 tattttttac tgcatttatt atatgaggca ttagattttg attgtctttt tccgcattct
     2041 taaccaaaag ttcaattgca tgatcaacct tattcttatc tctttttagc cttagctggt
     2101 ttaaccttgc tatttgtttt ttttcaattt caggatccat gacatttagt aaaggttcta
     2161 catcatgttg gtcttggaat ttattcactc caactataat ccttttttgt tcatctatct
     2221 ctttttttaa ggagtatgca ttctgtctta tttcgtcctg aaagaatcct ttttcgactg
     2281 cagaaagtgc tccacctatt ctgtctatcc ttttgaggta tttatctact tcatcctcta
     2341 ttttattagt taaaaattct acataatatg atccacctaa tggatccaca gtttttgtta
     2401 ctcctgtttc tgtagctatc atttgttgtg ttctcaaagc aattttaaca gattcttcag
     2461 ttggcaaagc taatgcctca tctttagaat ttgtatgtaa agattg
//
LOCUS       DATCMF010000120         1582 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_346423, whole genome shotgun sequence.
ACCESSION   DATCMF010000120 DATCMF010000000
VERSION     DATCMF010000120.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1582)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1582)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1582
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_346423"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            989..>1582
                     /locus_tag="VIL14_01485"
     CDS             989..>1582
                     /locus_tag="VIL14_01485"
                     /inference="COORDINATES: protein motif:HMM:NF013077.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HEY8522410.1"
                     /translation="MLDSKIEEHKRNPTHKINSLFIDRWSPRSMAGEDIDDVDLMSLF
                     EAARWAPSSYNNQPWRFIYAKRNNIESWNKLFDLLYEGNRVWAKNAAALVVVISRKNF
                     EYNEKPSVTHQFDAGAACENLALEAVDLGIAIHAMEGFDHQKAKTNLGIPESYNVMAM
                     IAIGKRGPKENLPPKLQDAEFPSDRKPLTEIVMEGYFR"
BASE COUNT          593 a          202 c          237 g          550 t
ORIGIN      
        1 ataacaaaca tctatttttg gatattgctt gctacttaac atctttttgg tatttatata
       61 attcatagtc tactaagtta gcgagtatat tccataacct ctttaggtgt ttgtcagatt
      121 tccctatcct ataatggggt cagttgtttc cgttgtgata ttgattctaa aaatggactc
      181 aataattatg taaatcaata attaaaaaat atatttattt gtaacagtat ttccttattg
      241 aatattaaaa aagacaatac ttttgtataa atttattatt tcatcttata actcaaatag
      301 atcaatatat agtcatatta taaccgctat tgttataatt atagcaatat aatgatcaaa
      361 gaataaggat attatatgct ataaagtttg acattgataa ttattaacaa gtaatagtaa
      421 tagtagatac taaaagtaac aaaattttat acaattatta tatattttaa agtaaaaaat
      481 aactcaatgc aaggtacatg tgaagtttgt ggtgcaaata atgtagattt gcaaaaaaag
      541 gaaacagcag atggtcaaac tcaaaatgtt tgtaaccaat gtgcataaaa agataacaaa
      601 aaataagaaa tatgatgaat attaataata ataaattcta tttctatttt tctatatatt
      661 tactatctag aaattgtgat ttaatatata tacatatata tataaaatgg cctacaactt
      721 gatattattt aagtcgatta tctattgttc tgaatttcta ttagagactc aatcccatgt
      781 tagaagagat actatcgcga ctgcatttga cttataatat atggattatc atagagtcag
      841 ttttccgtaa caaaaattct cctaattttg tatgtaacca tataaactct ttagaattag
      901 aatgttcatc taataagtaa agtaaataat tttttaatgt ttgatataaa ttatattttt
      961 atatatatta ctattctcta tcttatccat gcttgattca aaaatagaag aacataaaag
     1021 aaatccgact cacaaaatta attccttatt cattgacaga tggtcacctc gatctatggc
     1081 aggtgaagat atagatgatg ttgatttgat gtcacttttt gaagctgcta gatgggcacc
     1141 atcatcatat aataatcagc catggagatt tatctatgca aaaagaaata atatagaaag
     1201 ctggaataaa cttttcgatc tattatacga aggcaatagg gtttgggcaa aaaatgctgc
     1261 tgctttagta gttgttattt caagaaagaa ttttgaatat aatgaaaagc cttcagtcac
     1321 acatcaattt gatgcaggtg cggcatgtga gaatttagct ttagaagcag tggacctagg
     1381 aattgctatc catgctatgg aaggattcga tcaccaaaaa gctaagacta acttgggcat
     1441 tcctgaatca tataatgtta tggcaatgat tgctattgga aagagaggac ctaaagaaaa
     1501 tcttccacct aaacttcagg atgctgaatt tcccagtgat agaaagccat taacagaaat
     1561 agtgatggaa gggtatttta ga
//
LOCUS       DATCMF010000121         1738 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_213435, whole genome shotgun sequence.
ACCESSION   DATCMF010000121 DATCMF010000000
VERSION     DATCMF010000121.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1738)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1738)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1738
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_213435"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..603)
                     /locus_tag="VIL14_01490"
     CDS             complement(<1..603)
                     /locus_tag="VIL14_01490"
                     /inference="COORDINATES: protein motif:HMM:NF025065.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-containing alcohol dehydrogenase"
                     /protein_id="HEY8522411.1"
                     /translation="MKSNSHLMEFPRKILVGDNVISELGNFIIDITNRRISTVVIISG
                     ETVRTKIDDNIKKSFKSHIKNYWFIRKDASFETVARIKIEIEELKPDIILGIGGGKSV
                     DVGKMIAYCIKKPFISIPTSASHDGISSPFVSLKGSNKPHSIKVNTPIGILADIKLIS
                     EAPTRLLSSGCGDLIGKLTAVKDWELARDDNNEYFGAYSAH"
     gene            complement(716..1006)
                     /locus_tag="VIL14_01495"
     CDS             complement(716..1006)
                     /locus_tag="VIL14_01495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAM domain-containing protein"
                     /protein_id="HEY8522412.1"
                     /translation="MDVETNRENTTSNRPKENNSGNETGFRKFRSFRIPVKVGEEYDV
                     KIEAMSKRGDAGVAKIEGMVIFVANTKEGDEVKIKINRVGMGYAIAEVVQQQ"
     gene            1171..>1738
                     /locus_tag="VIL14_01500"
     CDS             1171..>1738
                     /locus_tag="VIL14_01500"
                     /inference="COORDINATES: protein motif:HMM:NF028523.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-CASP ribonuclease aCPSF1"
                     /protein_id="HEY8522413.1"
                     /translation="MEFTNFDNEQQSSQNIMATILKSLPKESGLTKIEYEGPSIALYS
                     KNPRFLIENPQILSNMVNTIRKRVVIRTDESIRKSRNDSTKIIQNRLLPFKVKSSGMI
                     FDDALGELTIYISNSFEMKNQIENTLLLDLVSETGWKIKLRRSTVKLATIQFIDKVLD
                     SSTDYRIKFYKEIGDKVFRPKLSTSCEAS"
BASE COUNT          578 a          303 c          220 g          637 t
ORIGIN      
        1 atgagcagaa taggctccga aatattcatt attatcatct cttgctaatt cccaatcttt
       61 tacagcagtg agtttaccta ttaaatctcc acacccactt gacaataacc tagtaggtgc
      121 ttcagagatt aatttaatat ctgccaagat tcctattggt gtgtttactt taatagaatg
      181 aggtttattt gaccctttta aagacacaaa tggacttgaa ataccatcat gagaagcaga
      241 tgttggtata cttataaatg gtttttttat acaatatgca atcatctttc caacatcaac
      301 tgattttccc cctccaatcc caagtattat atctggtttt aattcttcta tctctatttt
      361 gattctagct actgtttcaa aagatgcatc ttttctaata aaccagtaat ttttaatatg
      421 cgacttaaat gatttcttaa tattatcgtc aatctttgtt cttactgttt caccactaat
      481 gatgactaca gtggatattc ttctattagt gatatctatt ataaaatttc caagttctga
      541 aattacatta tctcctacta gaattttcct tggaaactcc atcaaatgac tatttgattt
      601 caaatatctt tctttcttta ttcaaacaaa ctctaattat ataaataaaa taaatatatt
      661 tcgtaaattt attatcttga caaatttttt attattatta ttaccaaact aattttcatt
      721 gttgctgtac aacctctgct atagcataac ccattcctac tctgttgatt tttattttaa
      781 cttcgtcacc ctcttttgtg ttagctacaa atattaccat accttcaatc ttagcaacac
      841 ccgcgtctcc tcttttactc attgcttcaa tttttacatc gtactcttct ccaactttaa
      901 ctggaattcg aaaagatcta aactttctga aacctgtttc gttacctgaa ttattttctt
      961 tgggcctgtt actagttgta ttttctcgat tggtttctac atccatacta tctaaccttt
     1021 ctttacattg aatttattat atattactat ttcaatattt tttttagttt taccttaaaa
     1081 aagaactgaa ttctctatta atgaatcgca atcaatttat atttcaatca gaaaattgag
     1141 gtatactata ttatactgaa ggaactaaag atggaattta ctaattttga taatgaacaa
     1201 cagtctagtc agaatattat ggctactata ctcaagagcc taccaaagga atccggcctg
     1261 acgaagatag aatatgaggg acctagtata gcactataca gcaaaaatcc gagatttttg
     1321 atagaaaacc cccaaatcct ttccaatatg gtcaatacaa ttagaaagag agtagtaata
     1381 agaaccgatg aatcgattcg caaatcaaga aatgattcta ccaagattat tcagaatcgc
     1441 ctactgcctt ttaaggtaaa aagtagtgga atgatttttg atgatgcatt aggtgaactt
     1501 acaatctata tcagtaattc atttgaaatg aaaaatcaaa ttgaaaatac ccttttattg
     1561 gatttagtta gtgaaaccgg ctggaaaatt aagttaagaa gatcaacagt aaaacttgca
     1621 acaattcaat ttattgataa agttttagat agttccactg attataggat aaaattctat
     1681 aaagaaatcg gtgacaaagt tttccgacca aaattaagta ctagttgtga agctagta
//
LOCUS       DATCMF010000122         1587 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_346477, whole genome shotgun sequence.
ACCESSION   DATCMF010000122 DATCMF010000000
VERSION     DATCMF010000122.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1587)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1587)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1587
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_346477"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1489
                     /gene="thsB"
                     /locus_tag="VIL14_01505"
     CDS             <1..1489
                     /gene="thsB"
                     /locus_tag="VIL14_01505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0140662 - ATP-dependent protein folding
                     chaperone [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="thermosome subunit beta"
                     /protein_id="HEY8522414.1"
                     /translation="LKEIDVQHPAAKMVVEVAKSVDNEVGDGTTSSVIFTGSLLEKAE
                     ELIDKNVHPSVIVDGYTAASIEALQTLDKIAIKVKTDDRDLLAKIANTSMYSKLVSED
                     SPVLSKIVVDATQMIAELNEKTKALKVDLDNIKVEKKAGGSMQDTSLIKGIVLDKEVV
                     HSGMPKRIEKAKIALINSPLEIEKTEMSAEIRINDPQQMQMFLEEENNMLRAMVEKVK
                     SSGANVLLCQKGIDDLAQHYLAKDGILAVRRVKESDMLKLTKATGARLVNNIDDLSSK
                     DLGSADVVEERKVETDKWVFIEGCKNPKAVTILVRGGSQRVVDEADRSLHDALMVMKD
                     VLEKPFIVAGGGSPEAYIATHIRNWSSSLEGREQLAVIKFAEALETIPISLATNAGMD
                     PIDTMAELRAKQNKGLKWTGVNVRSTTVADMFKQNILEPVVIKEQIIKSATEAACMLL
                     RIDDVIASSKSKGGPPGGGMPGGMGGMGGMPGMGGMGGMPGMDMD"
BASE COUNT          571 a          232 c          336 g          448 t
ORIGIN      
        1 tctaaaagaa atagatgtcc aacatcctgc agcaaaaatg gtcgtagaag tagccaaatc
       61 agtagataat gaggtcggcg atggtactac atcttcagta atttttactg gttcactttt
      121 ggaaaaggcg gaagaattga ttgacaaaaa cgttcatcca tcagttattg ttgacggtta
      181 tactgctgct tccattgaag ctcttcaaac attagataaa attgctatta aagtaaaaac
      241 tgatgataga gatcttttag caaaaattgc taatactagt atgtattcaa agttagtttc
      301 agaagatagc cctgtcttaa gtaaaatagt agtagacgct acacaaatga tagctgaatt
      361 gaatgaaaaa acaaaagctc taaaagtgga tcttgacaat atcaaagtag aaaaaaaagc
      421 agggggttct atgcaggata cttctcttat taaaggtata gtccttgata aagaagttgt
      481 tcatagtgga atgcctaaaa gaattgaaaa agcgaaaata gccttgatca attctccatt
      541 agaaatagaa aaaactgaaa tgagtgcgga aatccgtatt aatgatcctc aacaaatgca
      601 aatgttcctt gaagaggaaa ataatatgct aagagcaatg gtagaaaaag ttaaaagttc
      661 aggcgcaaat gttttactat gtcaaaaagg aatagatgat ttagcacaac attatcttgc
      721 taaagatggt atacttgcag ttagacgtgt taaagaaagt gatatgctaa aattaactaa
      781 agccacaggt gcaagacttg taaataatat tgatgatctt tcttcaaaag accttggttc
      841 agctgacgta gtcgaagaaa gaaaagttga aactgataaa tgggttttca tagaaggatg
      901 taaaaatcca aaggcagtaa ccattctagt tcgaggtgga tctcaaagag tggtcgatga
      961 agcagatcgt tctcttcatg atgcactgat ggttatgaaa gatgttttgg aaaaaccatt
     1021 tatagtagca ggtggaggat cgccagaagc ctacattgct acacatataa gaaattggtc
     1081 tagcagttta gaaggtagag agcaattagc agtcattaaa tttgcagagg ccttagaaac
     1141 tattccaatt tctcttgcta ctaatgcagg tatggatcca atagacacaa tggcagagtt
     1201 aagagcaaaa caaaacaaag gactgaaatg gactggggtg aatgtaagga gtacaactgt
     1261 tgcagatatg tttaaacaaa atatcttgga acctgttgtg atcaaagaac aaataatcaa
     1321 atctgctact gaagcagctt gtatgctttt acgaattgat gatgttattg catcaagtaa
     1381 atccaaagga ggcccacccg gaggcggtat gcccggtgga atgggtggaa tgggtggaat
     1441 gcccggaatg ggtggaatgg gtggaatgcc cggaatggat atggattaat ttttttcttt
     1501 ccatcctttt ctgtttacta atgtattctt cgattaatct ttcatagtct aacacaagca
     1561 ttttgttttc aatattcaaa aaataat
//
LOCUS       DATCMF010000123         1890 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_346600, whole genome shotgun sequence.
ACCESSION   DATCMF010000123 DATCMF010000000
VERSION     DATCMF010000123.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1890)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1890)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1890
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_346600"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..682)
                     /locus_tag="VIL14_01510"
     CDS             complement(<1..682)
                     /locus_tag="VIL14_01510"
                     /EC_number="1.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II glyceraldehyde-3-phosphate
                     dehydrogenase"
                     /protein_id="HEY8522415.1"
                     /translation="MVKLFINGYGNIGRRLATAFDLDREVDLVGIAKYKPDERAVEAI
                     SKGYKVFIPRSMEQEFKNNKLEVTGFLEDAIQQSDIVIDASKEGLGYENKRKFYLPMK
                     KKAIFQGGEDREGKYSVADIIHNSRVNYNKVVGKSYVIQGSCNVSGMGRVIQPLIDHF
                     GDRIRRYDVTLIRRWADLEDLNDVKDSIQWDKNPHHQDDVKDFIPNIKLFVDAYKVPS
                     RMMHLHQMS"
     gene            801..1388
                     /locus_tag="VIL14_01515"
     CDS             801..1388
                     /locus_tag="VIL14_01515"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004049 - anthranilate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0046820 - 4-amino-4-deoxychorismate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HEY8522416.1"
                     /translation="MKILIIDNYDSFVYNIAQSLGQHNITTYVYRNDNITLSKIKKLG
                     IDAIIISPGPGNPEDKKYFGICNNIIKHLGKEIPLLGICLGHQGIVSAFGGKITNAGI
                     TRHGKTSEIYYKFDPLFEDVKNPFLATRYHSLIADKKTFPKCLEITANSLDDNEIMAI
                     THKKYPIKGVQFHPESILTGEGLKILNNFLSFIKK"
     gene            1385..>1890
                     /locus_tag="VIL14_01520"
     CDS             1385..>1890
                     /locus_tag="VIL14_01520"
                     /inference="COORDINATES: protein motif:HMM:NF012800.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522417.1"
                     /translation="MINTELNIRGILNKISSKNNLTYNEAILIFKNIVEGRIQDYDST
                     SILKEISVKGETGAEILAMIEIIKEHSIKIRPKVKNNLFDICGTGGSKIKTFNISTAS
                     AIVAAAAGCNIAKHGNRAVSGICGSADFLEYIGLNLSNPPHIVSSCIEELGIGFLFAP
                     LFHPVLKNV"
BASE COUNT          647 a          311 c          274 g          658 t
ORIGIN      
        1 ttgacatttg atgtaaatgc atcattcttg atgggacctt ataggcatct acaaagagtt
       61 ttatgttagg tataaaatct ttcacatcgt cttgatgatg tggattctta tcccattgta
      121 ttgaatcctt tacatcattt aaatcttcta aatctgccca tcgtctaatc aatgtgacat
      181 cgtatctcct aattctatca ccaaagtggt caattaaagg ttggattact cttcccattc
      241 cagagacgtt acaacttccc tgaataacgt aagactttcc cactactttg ttataattaa
      301 ctctagaatt gtgaataata tcagcaacag aatatttacc ttctctatct tctccacctt
      361 gaaatatagc cttttttttc atgggtaaat aaaattttcg tttattttcg tatcccaagc
      421 cttcctttga tgcatctatt acaatatcac tctgttggat agcatcttca agaaaaccag
      481 taacctccaa tttattattt ttgaattctt gttccataga tcgtggaata aaaactttat
      541 atcctttgga tattgcttct actgctcttt catcaggttt atatttcgct ataccaacca
      601 aatctacttc tctgtctaaa tcaaatgctg tagcgagtct tcttccgata ttgccataac
      661 cattaatgaa taatttaacc atttcaacca ctaaaatcgt cttaatttat tccattaaaa
      721 gtataatata tttttatttt gactttctag taatttgaaa tgtttaaatg gactgtacct
      781 attaataatt tcttatctaa atgaagattt tgattattga taattatgat tcttttgttt
      841 ataacattgc acaatcactt gggcaacata atattacaac gtacgtttac agaaatgaca
      901 atattactct tagtaaaata aaaaagttgg gtatagatgc aataataata tcaccaggac
      961 ctggaaatcc agaagataag aaatactttg gaatttgcaa taatattata aaacacttag
     1021 gaaaagaaat cccactttta ggtatatgct taggacacca aggaatagta tcagcattcg
     1081 gtgggaaaat cacaaatgca ggtatcacca ggcatggcaa aacaagtgaa atatattaca
     1141 agttcgatcc cttatttgaa gatgtcaaaa atccttttct tgctacccgt tatcattctc
     1201 taatagctga taaaaaaaca tttcctaaat gcctagaaat aacagcgaat tcattagatg
     1261 ataatgagat tatggctata actcataaaa aatatcctat taaaggagtt caatttcatc
     1321 ctgaatcaat attaacgggt gaaggattaa aaatcttaaa caattttctt tcatttataa
     1381 aaaaatgatc aatacagaac ttaatattag gggcatacta aataaaatct cttctaaaaa
     1441 taatttaaca tataatgaag ctatactgat tttcaaaaat atagttgaag gtagaattca
     1501 agactatgat tcaacttcta ttctcaagga gatttcagtg aaaggtgaga caggagcgga
     1561 aatacttgca atgattgaaa ttattaagga gcattctata aaaatccgtc cgaaagtcaa
     1621 aaataattta tttgatattt gcggtactgg aggctctaaa atcaaaacat ttaacattag
     1681 tactgcatct gcaattgttg ctgctgctgc tggttgtaat atagcaaaac atggtaatag
     1741 agcagtttcg ggtatatgcg gaagtgcaga ttttttggaa tatattggtt taaacttaag
     1801 caatccacca catattgtat cgagttgtat tgaagaattg ggtataggtt ttttgtttgc
     1861 tcccttgttt catcctgtat taaaaaacgt
//
LOCUS       DATCMF010000124         3514 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_155316, whole genome shotgun sequence.
ACCESSION   DATCMF010000124 DATCMF010000000
VERSION     DATCMF010000124.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3514)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3514)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3514
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_155316"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..192
                     /locus_tag="VIL14_01525"
     CDS             <1..192
                     /locus_tag="VIL14_01525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522418.1"
                     /translation="ENLKNEYYLGLVSSIPFHYTKTNLGFNTFNNVKEVLQNMLTRYG
                     KSNKITICPDPCITFFIKQ"
     gene            294..791
                     /locus_tag="VIL14_01530"
     CDS             294..791
                     /locus_tag="VIL14_01530"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020265495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HEY8522419.1"
                     /translation="MQSILRSVGGYVIRNCEEKDLPFVININMLTLPEHYSDYFFSSI
                     LAELPEAFIVAEIKNQIVGYIMCKIEFGFSNFRKLGFVKKGHVVSVAVLEEHQGKGVG
                     TALMLEGINGIIIRKSDEIYLEVRVSNESAVQLYKKLGFIIKSRLKSYYRDGEDAFLM
                     AKDLS"
     gene            825..1043
                     /locus_tag="VIL14_01535"
     CDS             825..1043
                     /locus_tag="VIL14_01535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522420.1"
                     /translation="MKSNRPTGIFLLIVPTIIFLIYIYLLFASDLDLLLIKLTIIGTI
                     GIIVSVFIWIGYTMISTSNPNEITDDNI"
     gene            complement(1040..1873)
                     /locus_tag="VIL14_01540"
     CDS             complement(1040..1873)
                     /locus_tag="VIL14_01540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase family
                     protein"
                     /protein_id="HEY8522421.1"
                     /translation="MLKNALKDVFAKEEIEKVYSSFDIIGDIIIIKIPEELDGKKEII
                     AKTLINKIKTVKTVFQQISSVQGEYRTRRLCFLTGINKSITEYREHGCIFKVDVLKTY
                     FSPRLSTERLRVSKLIRNNEIIVNMFAGIGTYSIILAKKNPDCIVYSIDSNPDATDLC
                     IINSKLNKVQDRVIPILGNARTIIATQLKGKATRVLMPLPEQAAEFIDSAIMALENNK
                     GIIHYFAHIKAKSKLNALEEGKVNCHNNFQCYQYKIICGRVIREVGPRIYQTVFDLEI
                     L"
     gene            complement(1896..>3514)
                     /locus_tag="VIL14_01545"
     CDS             complement(1896..>3514)
                     /locus_tag="VIL14_01545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ribosome biogenesis/translation initiation
                     ATPase RLI"
                     /protein_id="HEY8522422.1"
                     /translation="CVKKCPFEAIIIVNLPKELDEHKIHQYGINSFRLYHLPTPKKGS
                     VVGLLGRNGMGKSTIVNILSGNLRPNFGNYDSNIQWEHVIEKFHGSELKSHFENIANG
                     NFKVSIKPQLVYKIPKVFKGTVNEILKKFDENKTAHEISEKLGLKNSLNKNLNELSGG
                     ELQRLAVTVAAIKDAEYYFFDEPSSYNDIYQRLAVAKVIQNLASKGKTVMVIEHDLTL
                     LDYLSDYIHILYGESGAYGIVSSLQSTKAGINNFLDGFIPSENIRFREKKFRFDTFNP
                     VDDFILNNIVTQYSELQKNFNAFRLKVSEGKIRKGEVLGVIGANALGKTTFMKMIAGV
                     ENADTGKIETNAKISYKPQYITQEYDSDVKSLLYTAYQNIIEGSIAEEQILIPMGVKK
                     LYEKNIKNLSGGELQKVAIATSLMRDVDIYALDEPSAFLDIEERIALAKFIQRFVRAQ
                     GKSAIIIDHDMQLIDIVSDSLIIFNGNPGVYGIASKPMSKIEGMNLFLRELAITYRRD
                     ETTGRPRVNKNGSQLDKLQKNSGEYYYIKK"
BASE COUNT         1124 a          547 c          470 g         1373 t
ORIGIN      
        1 gagaatttaa agaatgagta ttatcttggc ttagtttctt caataccttt ccattatact
       61 aagacaaatt taggatttaa tacttttaat aatgttaaag aagttttaca aaatatgctc
      121 acacgttatg ggaaatcaaa caaaattacg atttgccctg atccttgtat tacatttttt
      181 ataaaacaat aagaattatt ttatatttga gatagcttta atctatttac tttataatag
      241 agaatttgtt ctattatata aagttaaata ccttgtcaag ttaaatatag aaattgcaat
      301 ctattcttag aagtgttggt ggttatgtta ttcgtaattg cgaagaaaaa gatcttccat
      361 ttgttattaa tataaacatg ttaacacttc cagaacatta ttctgactat ttttttagtt
      421 ctattttagc agaattgcct gaagcattta ttgtagcgga aataaaaaat cagatagttg
      481 gttacattat gtgtaaaata gaatttgggt tctcaaattt cagaaagtta ggttttgtaa
      541 agaaaggtca tgtggtatcc gtagcagttt tggaagaaca tcaaggaaaa ggtgtaggaa
      601 cagcattaat gctagaagga attaacggta ttattattag aaaaagcgat gaaatctatt
      661 tggaagttag agtaagcaat gaaagtgcag ttcaactata caaaaaacta ggtttcatta
      721 taaaatctag attaaaatca tactatcgtg acggtgaaga cgcattttta atggccaaag
      781 atcttagtta gatatataat attacaattg gatttcttat gataatgaaa agtaacagac
      841 ctactggcat ttttctttta attgttccta caataatttt tctaatctat atatatctat
      901 tatttgcttc agatctagat ttgcttttaa taaaacttac cattatagga actataggga
      961 taattgtttc cgtatttatt tggattggat atactatgat ttctacttct aatcctaatg
     1021 agattacaga tgataatatt taaagtatct ctaaatcaaa aaccgtttga tatattctag
     1081 gaccaacctc tcttattact cttccacata ttatcttata ttggtaacat tggaaattat
     1141 tatgacaatt tacttttcct tcttccagtg cattcaattt acttttggct ttaatatgag
     1201 caaaatagtg aataattcct ttattatttt caagagccat aatcgctgaa tcaataaatt
     1261 ctgctgcttg ttctggaagt ggcataagaa ctcttgtagc tttacccttt aattgagtag
     1321 ctataatggt tctagcatta cccaaaatag gaataactct gtcttgaact ttgtttaact
     1381 tggaattaat aatacataaa tcggttgcat caggattcga atctatgcta tatacaatac
     1441 aatcaggatt tttttttgca agaataattg aataagttcc tattcctgca aacatgttaa
     1501 cgattatttc attatttctt atcaacttag aaactctcag tctttcagta gaaagacgag
     1561 gagaaaaata tgtctttaat acatctactt taaatataca tccatgttct ctatattctg
     1621 taatcgattt attgattcct gttaaaaaac atagtcttct tgttctgtac tctccttgta
     1681 ctgaagagat ttgctgaaag acagttttta ctgtcttaat tttatttatc agtgttttgg
     1741 ctataatttc ttttttccca tctagttcct ctggaatttt aattattatt atatcaccaa
     1801 ttatatcaaa tgatgaataa accttttcaa tttcttcttt tgcaaataca tcttttaatg
     1861 catttttaag catggacccc atttttacca tatctttatt tttttatata gtaatattcg
     1921 cctgaatttt tttgtaattt atctaattga cttccatttt tattaactcg tggtcgtcca
     1981 gtagtctcat cccttctata agtaatagct aattctctaa gaaataggtt cataccttct
     2041 atcttagaca tgggtttgct agctataccg tatacacctg ggttcccatt aaatattatt
     2101 aaagaatcag aaactatatc aattaactgc atgtcatgat caataattat tgctgatttt
     2161 ccttgcgctc ttacaaacct ctgaataaat tttgctaatg ctattctctc ctcaatatct
     2221 agaaaggctg aaggttcatc taatgcatag atatcaacat ctctcattaa tgatgttgct
     2281 attgctactt tttgtaattc tcctccgctt aaattcttta tatttttttc atacagtttt
     2341 ttaactccca ttggaataag aatttgttcc tctgcaatgc ttccttctat aatattttga
     2401 tatgctgtgt ataataatga cttaacatca gaatcatatt cttgagttat atattgtggt
     2461 ttgtatgaaa ttttagcatt agtttctatc tttccagtat cagcattttc tactcctgca
     2521 atcattttca taaaagttgt ttttcctaat gcatttgctc ctataactcc taaaacttca
     2581 ccttttctta tttttccctc cgaaactttg agacgaaatg cgttaaaatt tttttgtaat
     2641 tctgaatatt gagtgacaat attatttaaa ataaaatcat caacaggatt gaatgtatca
     2701 aatctgaatt ttttttctct aaatcttata ttttctgatg ggataaaacc gtcgagaaaa
     2761 ttattgattc ctgcctttgt tgactgtaaa ctggaaacaa ttccataggc tccagattca
     2821 ccatataata tatgaatata gtcagacaaa taatctaata aagttaaatc atgctcgata
     2881 accataactg tttttccttt ggaagcaaga ttttgtatta ctttagctac ggccaatctt
     2941 tggtaaatat cattatatga tgatggttca tcaaagaaat agtactctgc atctttaatt
     3001 gcagcaacag tgactgctaa tctctgtaat tctcctccac ttaattcatt taggttttta
     3061 ttcagggaat ttttcaaacc tagtttctct gagatttcat gtgcagtttt attttcatca
     3121 aatttcttta aaatttcatt tactgttccc ttgaacacct ttggtatttt ataaactagc
     3181 tgaggtttta tcgatacctt gaaatttcca ttagcaatgt tttcaaaatg tgactttaat
     3241 tcagaaccat gaaacttttc aataacatgc tcccattgaa tatttgaatc ataattgcca
     3301 aaattaggtc taagattccc tgataatata tttacaatag tagattttcc cataccattt
     3361 ctaccgagga gaccgacaac agaacctttc tttggagttg gtaaatgata gagcctaaaa
     3421 gaatttattc catactgatg aattttatgt tcgtctaatt cttttggtaa atttactatt
     3481 ataattgctt caaagggaca ttttttaaca cata
//
LOCUS       DATCMF010000125         2597 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_155386, whole genome shotgun sequence.
ACCESSION   DATCMF010000125 DATCMF010000000
VERSION     DATCMF010000125.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2597)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2597)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2597
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_155386"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..797
                     /locus_tag="VIL14_01550"
     CDS             <1..797
                     /locus_tag="VIL14_01550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522423.1"
                     /translation="PSIAGELGMTPLTTPNKLLPTYVIDITTGSGTSYKFQHFYPLNI
                     AVPVDTTVAWFNADPEQIHTVTSSDPGASNSGKLFNSGIIPYSSSFQYTFDQPGRISY
                     HCEIHPWMIGSVYASDSNKQGKNFKLTTGTNMGFEDNSPYDWSFNTTEIDRILFNIEP
                     LSVNTDKKTPITYNIGIYNNDLQKEIFSKSFFARGNDFQFELLSSDLDEPLVYGPDFS
                     DPIIGAYHIRDNFPDGTYILKVEITGIGSNLTQTNISDEFNGIISS"
     gene            complement(842..>2597)
                     /locus_tag="VIL14_01555"
     CDS             complement(842..>2597)
                     /locus_tag="VIL14_01555"
                     /inference="COORDINATES: protein motif:HMM:NF012493.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="helicase-related protein"
                     /protein_id="HEY8522424.1"
                     /translation="AYTLISKKYMEQSPNPLIVAMTASPGSDKNRIQQICNNLYIEHI
                     EYRNEEDADVKPYVNPIELKWEFVELSEKYRQIILLFKSMLQEKLRWLIFRGLIKKNN
                     IDYVFKRDLLELAEILQRNLKFTLNEEKGPLYLALLNQSAALSLMYCIELIESQGPFS
                     LKTFIKRMESSEGKAHSLILKDPRMKDIFKLLENVTEHPKLIYILNLCKKEKLDTSAN
                     KNPNVLLNDSMSSQILIFSHYRDTATHIVDELNKTGIKSFRFVGQSTRNNDIGMKQNE
                     QSVILDSFRKKEFNVLVATSIAEEGLDIPEVKLVIFYEPVASEIRHIQRKGRTGRKSS
                     GNVIILAAKDTVDMRILFANKRRIEKMKTIFNTMKTILTPISRVPIPYNRLTELELAD
                     LDKNLNIEQKKLNEKELKYEDNEKKVIEKIKVKNAIIDKVPKFQIGMITKTENNLIER
                     AYRHIYNFLIDERNNKNSFDLSYFRDKFTFDTHIILEALKKLEKQQVIKIKNNRSITL
                     NRLPNKSTGKEYNIYVEKILSGKAYVLVNEKWYALLNYYDYEGPRNLLKKGSEFKAIA
                     ELYTNGNHFCIRIKEIIL"
BASE COUNT          812 a          404 c          343 g         1038 t
ORIGIN      
        1 ttccaagtat cgcaggagaa ttaggtatga cgccgctcac aactcctaat aaattattac
       61 ccacatatgt tatagatatc actacaggtt ctggaacaag ttataaattc caacattttt
      121 atccattaaa tatcgcagta cctgtagata caactgttgc gtggtttaat gctgatcctg
      181 aacaaattca tactgttaca agtagtgacc ctggagcttc taattctgga aaactattta
      241 attcaggaat tattccatat tcatcttctt ttcaatatac atttgatcag cccggtagaa
      301 tttcatatca ttgtgaaatt catccatgga tgataggatc agtctatgca agtgattcta
      361 acaaacaagg aaaaaatttc aagcttacta ctggtacaaa tatgggattt gaagataatt
      421 ctccatatga ttggagtttt aacactaccg aaattgatag aattttgttt aatatagaac
      481 ctttatcagt aaatacagat aaaaagacac ccataacata caatataggt atttacaata
      541 atgatctcca aaaagaaatt ttttcaaaat ctttttttgc tagaggtaac gattttcaat
      601 tcgaactttt atctagcgat ttggatgaac ctctagtgta tggtcctgat tttagtgacc
      661 ctattatagg tgcttatcat ataagagata attttcctga tggaacttat attctaaaag
      721 tagaaataac aggtattgga tctaatctaa cacaaacgaa tatctctgat gaattcaatg
      781 gtataatctc ttcataagat tacactaata agttgtgcta aaactggtca gatgagttta
      841 attaaagtat tatttccttt attctaatgc aaaagtgatt tccattagta tataattctg
      901 caatagcttt aaattctgat cccttcttta aaaggtttct cggtccctca taatcataat
      961 agtttagcaa tgcataccat ttttcattta ctaaaacata tgctttgcca gataaaattt
     1021 tttccacata gatattatat tcttttcctg ttgatttatt tggtaatcga tttaaagtta
     1081 ttgatctatt attttttatt ttgattactt gttgcttctc taatttcttt agggcttcta
     1141 atataatatg tgtatcaaat gtaaatttat cacgaaaata ggataagtcg aatgaatttt
     1201 tattatttct ctcatctatt aaaaaattat aaatatgtct atatgccctc tctattaaat
     1261 tattctcagt ttttgttatc attccaattt gaaactttgg aactttatct attattgcat
     1321 ttttaacctt aattttttca attactttct tttcattatc ttcatatttt aattcttttt
     1381 catttaattt tttttgttct atgttcaagt tcttatcaag atctgctagt tctagttccg
     1441 tcagacgatt atatggtata ggaactcgtg aaattggagt taaaattgtt ttcattgtat
     1501 tgaaaattgt tttcattttt tctattcgcc tcttatttgc aaataaaata cgcatatcta
     1561 cagtgtcttt tgctgctagg attattacgt ttccacttga ttttcttcca gttctacctt
     1621 ttctttgtat gtgtctaatt tcacttgcta ctggttcata aaatataact aacttaactt
     1681 caggaatatc taaaccttct tctgctatcg atgttgcaac aagtacatta aattcttttt
     1741 tcctaaatga atccaaaata acagattgct cgttttgctt cattccaatg tcattatttc
     1801 tagtagattg accaacaaat ctaaatgact tgattcctgt tttgttcaat tcatctacga
     1861 tatgagttgc agtatctcta taatgcgaga atatcaaaat ctgagaactc atgctatcat
     1921 tcaataatac attggggttt ttattcgcag aagtatctaa tttttctttt ttacataaat
     1981 taagaatata aatgagttta ggatgttcag taacattttc taatagtttg aaaatatcct
     2041 tcattcgagg atctttcaga attaaagaat gtgcttttcc ttcgcttgat tccattcttt
     2101 ttataaaggt ttttagagaa aatggccctt gactttctat tagttctata cagtacatca
     2161 aagatagagc agcagattga ttcaacagag ctagatataa gggccctttt tcttcattta
     2221 aagtaaactt taaatttctt tgtagaatct ctgcaagttc taataaatct cttttgaata
     2281 cataatctat attatttttt tttattaatc ctctaaaaat taaccatcgt aatttttctt
     2341 gtaacataga tttgaataac agtataattt gtctatattt ttctgataat tctacaaatt
     2401 cccattttaa ttctataggg ttcacatatg gtttgacatc tgcatcttct tcatttcgat
     2461 attcaatgtg ttctatgtag agattattac aaatttgttg tattctgttt ttgtcagagc
     2521 caggacttgc agtcatagct acaataagag gatttggtga ttgttccata tattttttag
     2581 aaataagagt ataagca
//
LOCUS       DATCMF010000126         1854 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_81453, whole genome shotgun sequence.
ACCESSION   DATCMF010000126 DATCMF010000000
VERSION     DATCMF010000126.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1854)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1854)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1854
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_81453"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..722)
                     /locus_tag="VIL14_01560"
     CDS             complement(<1..722)
                     /locus_tag="VIL14_01560"
                     /inference="COORDINATES: protein motif:HMM:NF015971.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522425.1"
                     /translation="MFDDKTILRRYSKNPILVPNKDNLWESKAVFNCALLYDGNLVHM
                     LYRAIGEYENYVSRIGYASSIDGYNFIRRKELAFGPSEDYERYGMEDPRLVEIDHQTF
                     ITYVVLSTHFRNRPEVFSALATTTDYHEFTRLGIITGKGADNKDVVFFPEKLNHKGSN
                     EQEKMTYLSLHRPSTWVGSAYGVDRPSIWLGEGESLKSSEKHTLLLKPEREWEALKVG
                     AGVPPIRTRNGWLIIYHGVSND"
     gene            complement(814..1116)
                     /locus_tag="VIL14_01565"
     CDS             complement(814..1116)
                     /locus_tag="VIL14_01565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522426.1"
                     /translation="MKKINETGLRDLGFIGPLSTYCIKLHRKPKKVFNTKATASIYMH
                     ANTEDYVFAICLTWMIMVCFFIVITRELILLIGVVFPILIMLLQRGKHKNNYSRVM"
     gene            1347..>1854
                     /locus_tag="VIL14_01570"
     CDS             1347..>1854
                     /locus_tag="VIL14_01570"
                     /inference="COORDINATES: protein motif:HMM:NF013324.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH domain-containing protein"
                     /protein_id="HEY8522427.1"
                     /translation="MRLYRRSTSSPTRDFANSASMYVDNKVEGRSFLPRIISIYASFY
                     TKLRHVDEGLKVVFIHILFTMPNPFRRAGNPYRRTPEGEPLEGTGFSRPWLRLIVPII
                     IGIIIISIVAISSVRIVDAGNRGVLVQFGNIDTDVSLDEGLHFVVPFRDNVVQMEVRT
                     QKVVENAAS"
BASE COUNT          564 a          346 c          350 g          594 t
ORIGIN      
        1 ctatcattgc tcaccccatg atatatgatt agccagccgt tccttgtcct aataggcgga
       61 actccagccc caacctttag ggcttcccat tctctctcgg gcttgagaag taaagtgtgc
      121 ttttcagaac tttttaatga ttcaccttcg cctagccata tgcttggcct atcaacacca
      181 tacgcggatc ctacccaagt actaggtctg tgcagagata agtaagtcat tttttcttgt
      241 tcgtttgatc ctttatgatt taacttctct ggaaagaaaa caacatcttt gttgtcagct
      301 cctttgcctg ttataatccc gagccttgta aactcatggt agtctgttgt agtcgctagc
      361 gctgagaata cttcaggtcg gttccgaaaa tgcgtggaga gtacaacata ggtgatgaag
      421 gtttggtgat cgatttccac tagtcgagga tcctccattc cgtatctttc gtagtcttca
      481 cttggaccga aagccaattc cttgcgtcta ataaagttat agccatctat actagatgcg
      541 tacccaattc tagaaacgta gttttcatat tctccaattg cacggtacag catatgtact
      601 aaatttccgt cgtacaaaag tgcgcaatta aaaactgctt tcgactccca caagttgtct
      661 ttgttaggaa ccagaatggg attttttgaa tatcttctca aaattgtttt gtcatcaaac
      721 aagacatata tccatggttt ttgctaatgt ataggtataa aactttttaa tataaagtcc
      781 agttatgtta tgattaatct tcgcccgcaa gatttacatt actctagaat agttattttt
      841 gtgttttcct ctctgaagca gcataataag tatggggaaa actactccta taaggagaat
      901 taattctctg gttattacta tgaaaaaaca taccataatc atccatgtta aacatattgc
      961 aaaaacataa tcttcagtat tagcatgcat ataaattgaa gctgttgcct ttgtattaaa
     1021 aacttttttt ggctttctat gtaacttgat acaatatgta gacaagggtc caatgaagcc
     1081 aagatctcga aggcccgttt cgtttatctt cttcaactac acttagctct agacgcagca
     1141 caaatttgca tcacaaaaga aatatacatt tagatatcaa tattatttat tctaacagtc
     1201 attacaatgt gttaattagt gtgagagctt gagaagctgc agaaattttc gaagaagatg
     1261 attagtgctt gaaaatacaa aagctcttcg ggtacatttt tgaagaatgt gcgcttaaat
     1321 gaggccaacg aaaaacaaag tgggaagtgc gactgtaccg taggagtaca tcgagtccta
     1381 cacgagattt cgcaaacagt gcatctatgt atgtagataa taaagttgaa ggtagatcgt
     1441 ttcttccgag aatcatatcc atttatgcat cattttacac gaaactgcgc catgtagatg
     1501 aaggtttaaa ggtagttttc attcatatat tatttactat gccgaatcca tttagaagag
     1561 ctggcaatcc ttacagaaga actccagaag gagagccact tgaagggact gggttttcta
     1621 gaccttggtt aagactaatc gttcccatta taataggtat tataataatt tcaatagtag
     1681 caatttcaag tgtgagaata gtggatgcgg gtaatagagg agtactagtt caatttggaa
     1741 atatagacac agatgtatcc ctagatgaag gtctacattt tgttgtacca ttccgtgata
     1801 atgtagtcca aatggaagta aggactcaga aggtagttga aaatgctgct tccg
//
LOCUS       DATCMF010000127         1624 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_214049, whole genome shotgun sequence.
ACCESSION   DATCMF010000127 DATCMF010000000
VERSION     DATCMF010000127.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1624)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1624)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1624
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_214049"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..654
                     /gene="fsa"
                     /locus_tag="VIL14_01575"
     CDS             <1..654
                     /gene="fsa"
                     /locus_tag="VIL14_01575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016832 - aldehyde-lyase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-6-phosphate aldolase"
                     /protein_id="HEY8522428.1"
                     /translation="DTANLDSIRHYSEMGMVDGITTNPSLLSKEGGDPEEIIREIIKI
                     VQGPVSLEVISTEIDQIMKESYILQRYGSNVVIKVPMIPDGLKAVKKLKEEGIETNVT
                     LVFSANQALLAAKAGASYVSPFIGRLDDIGAEGMSLIRDINQIFKNYQYNTKILVASI
                     RHPIHVIESAKVGADVVTLPPDILGKMFLHPLTDKGLKTFISDWENLKKTNPSIKIL"
     gene            complement(685..>1624)
                     /locus_tag="VIL14_01580"
     CDS             complement(685..>1624)
                     /locus_tag="VIL14_01580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEY8522429.1"
                     /translation="TTPRSSIGMAMNKLDLFKQLERIIKSKLVNKEFDKAIKEIIEGK
                     DVVKEFETLVKESKKSETKGYDSLENFDISIPNRMDINESEIYDIELIQKIKSAFRDW
                     KTGWVELHQEQGDELDTEAYIDSQTKPFLSDFKLSIRTKVVILLDHSSSIEEIELKYK
                     QATVALCEALSYLGIDFAVYAFSTEAQKVKCWLVKPPKIPWSILNARRLAQIRASGGT
                     PLAEIYTILLPFIKSFKPEIMITLTDGEPSNYDAVKEMVLTYRNLSIHMAALGLGKDL
                     NDLINIGHNLKYLNYNKTIASRVEDIPKKVINLLKV"
BASE COUNT          505 a          267 c          250 g          602 t
ORIGIN      
        1 gatactgcta atcttgattc cattcgtcat tattctgaaa tgggaatggt tgatggcata
       61 actactaatc cttctcttct ttcaaaagaa ggtggagatc cagaagaaat cattagagaa
      121 atcataaaaa tagtccaagg accagttagc ttagaggtaa tatctactga aatcgatcaa
      181 ataatgaagg aatcttatat tctccagcga tatggttcaa atgttgtaat taaggttcca
      241 atgattcctg atggattaaa agcagttaaa aaattgaaag aagaagggat agaaacaaat
      301 gttactcttg ttttttcagc taatcaagca ttattagctg caaaggcagg agcatcctat
      361 gtaagcccat ttattggaag actcgatgat atcggtgctg agggcatgag ccttatcaga
      421 gacataaacc aaattttcaa aaattatcaa tataatacta aaattcttgt ggcaagtata
      481 cgtcatccca ttcacgtgat tgaatctgct aaagttggtg cagatgtagt aactttaccg
      541 cctgatattc ttggaaaaat gtttttacat cctcttacag ataaaggctt aaagacattc
      601 atttcagatt gggaaaatct caagaaaaca aatccctcaa ttaagatttt ataactttat
      661 atttttcctt atttttctga acaattacac tttgagtaag ttaataacct tttttggtat
      721 atcttctact ctactagcta tagttttatt gtaattaaga tattttaaat tgtgaccaat
      781 attgataaga tcatttaaat cttttcctaa tcccagggct gccatgtgga tagagagatt
      841 cctgtaggtt aaaaccattt ctttaacggc atcataattt gaaggctctc catcagttag
      901 tgtaatcatt atctcaggct taaatgattt gataaaaggt aaaagaatag tgtatatttc
      961 agctaatggt gtaccgccac ttgctcttat ttgagctaat cttcttgcat tcaagataga
     1021 ccatggtatt ttcggtggtt taactagcca acattttact ttttgtgctt cagtactaaa
     1081 tgcatagact gcaaaatcaa ttcctaagta actaagggct tcacataacg ctacggtcgc
     1141 ttgtttatat tttagttcaa tttcttctat actactagaa tgatcaagta aaatgacaac
     1201 ttttgttctg attgataatt taaagtcgct gagaaaaggt ttagtctgag aatcaatata
     1261 tgcctctgta tctaattcat cgccttgttc ttgatgaagt tctacccatc ctgttttcca
     1321 atctctaaat gctgatttaa ttttttgaat tagttctatg tcatagattt ctgattcatt
     1381 aatatccatt ctatttggaa tactaatgtc aaagttttct aaactgtcat atccttttgt
     1441 ttctgatttc ttactttctt ttactaaagt ttcaaattct tttactacat cttttccttc
     1501 gataatttct tttattgctt tgtcaaattc tttattgact agttttgatt ttattattct
     1561 ctctagttgc ttaaataaat ctaatttgtt cattgccata cctatactag atcgaggagt
     1621 agtc
//
LOCUS       DATCMF010000128         1626 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_479273, whole genome shotgun sequence.
ACCESSION   DATCMF010000128 DATCMF010000000
VERSION     DATCMF010000128.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1626)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1626)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1626
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_479273"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..454)
                     /locus_tag="VIL14_01585"
     CDS             complement(<1..454)
                     /locus_tag="VIL14_01585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0009060 - aerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome c oxidase subunit I"
                     /protein_id="HEY8522430.1"
                     /translation="MVLEVKKPRPLWEIIFSTHHTDIGLLYIISSITFLMMGGALALA
                     IRAELFLPGQQIIPDPNTFHRFFTVHGTTMLFLWAIPFGAGIGNYLIPILVRYKDMAW
                     PKLNAVAFWMIPVGAAMVWLGFADLGWTAYPPYSIIRAPGPAAELWIFG"
     gene            complement(564..1277)
                     /locus_tag="VIL14_01590"
     CDS             complement(564..1277)
                     /locus_tag="VIL14_01590"
                     /inference="COORDINATES: protein motif:HMM:NF012355.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupredoxin domain-containing protein"
                     /protein_id="HEY8522431.1"
                     /translation="MSNNEKGIPEKSSDKFQKIKDYGIPLGVMAISLVVIYILWASFG
                     YIGPSFSNQVLSNQQETLREKYNLPTLEGEDNSITSEVPPSLREVMESNTTPTSTSQN
                     SQATTTTQSSTNTTISESSGNVTSGSTQGGQSTVAAGGVTLTILEGSSIQGNPDYDPD
                     ELTVKKGDKITVNNADTMPHTVTNGESGSDPNSGKLFDTSIINGGDSAEIDTSTVDAG
                     AHPFYCMVHPYMTGSLTVE"
BASE COUNT          527 a          294 c          281 g          524 t
ORIGIN      
        1 atccaaatat ccacaactct gctgcaggtc ctggtgcacg aataatagaa taaggtggat
       61 atgctgtcca accaaggtct gcaaatccca gccataccat tgcagcgccg acagggatca
      121 tccaaaatgc tactgcattc aactttggcc aggccatatc tttgtatcga actagaattg
      181 gtatcaagta attaccaata cccgcaccaa aaggaatagc ccaaaggaat agcatggttg
      241 taccatgaac tgtaaagaat ctatggaatg tatttggatc tggaatgatc tgttgcccag
      301 gcaaaaataa ttccgctcta atcgctaatg ctaatgctcc tcccatcatc aaaaaggtta
      361 ttgatgaaat aatatacaat aaaccaatat cggtatgatg agtggagaaa attatctccc
      421 acagtggacg tggtttttta acttctagaa ccattttaat gcctccatca taatatccat
      481 atccaacgac gcattataca aaacatcatt atcaataaaa gtattttgtt tattcatttg
      541 ttttaactct ctccctatct atttcactct actgttaaac ttcctgtcat gtatggatgt
      601 accatgcaat aaaatgggtg tgctcctgca tcaacagttg atgtatctat ttcagctgaa
      661 tcaccaccat ttattatact ggtatcaaaa agcttgccag aattagggtc tgacccactt
      721 tcaccattgg taacagtatg gggcatcgta tcagcattgt taactgttat tttatcacct
      781 tttttgactg taagttcatc tgggtcatag tctggatttc cctgtattga tgaaccttca
      841 aggattgtca atgtaacacc tcctgcggct actgttgatt gtcctccttg agttgatccc
      901 gatgtaacat ttcctgagga ttcagatata gtagtgtttg ttgatgattg tgttgtcgtt
      961 gttgcttggc tattttgtga agtggaagtt ggtgttgtat ttgactccat tacctcacga
     1021 agggaaggag gaacttcact agtaatacta ttatcttcac cttctaaagt aggcagatta
     1081 tatttttcac gaagtgtttc ttgctgattt gataaaactt gattcgaaaa tgaaggtcct
     1141 atatatccga aggaagccca caatatatag atcacaacaa gtgatatagc cataactccc
     1201 agtggaattc cataatcttt tattttttga aatttatcag atgatttctc tggtattccc
     1261 ttttcattat tgctcactcg ttaaattaaa aacaaaaggt catattaaga ttgtttgtat
     1321 aatcaataaa ataaaatcga ataaatcagg agttaactga gttaactaaa tcatcaagaa
     1381 ataattctat tttgttttgc attatccgat ataatgtacc aattataaaa ctaaaaccat
     1441 atcaatatat attatttata atagtgtagt aacgaaaacc gatatatagg atggcttaca
     1501 agttataact agacagaaat atgtattttg aggttgtaat ataaatgaaa aatagaagca
     1561 gaacagaaat agtgggtaat atactggacg ctgcaaatgg aggagcaacc aagacaaaaa
     1621 ttatgt
//
LOCUS       DATCMF010000129         1652 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_25637, whole genome shotgun sequence.
ACCESSION   DATCMF010000129 DATCMF010000000
VERSION     DATCMF010000129.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1652)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1652)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1652
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_25637"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..377)
                     /locus_tag="VIL14_01595"
     CDS             complement(<1..377)
                     /locus_tag="VIL14_01595"
                     /inference="COORDINATES: protein motif:HMM:NF018455.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase domain-containing protein"
                     /protein_id="HEY8522432.1"
                     /translation="MQVDHSNRSQIPGLSSLTDKDIIPYGLLLLYGPIGSGKSVYCRQ
                     FFLDGISEGDYCIYISSNLTEKQYRNAFSNIQESDLSRNARFVNPIRYHASGFEDKLT
                     QTLTGIRQTIDALKTTNDTTEKRG"
     gene            complement(516..1424)
                     /locus_tag="VIL14_01600"
     CDS             complement(516..1424)
                     /locus_tag="VIL14_01600"
                     /inference="COORDINATES: protein motif:HMM:NF013793.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HEY8522433.1"
                     /translation="MTKCIAFHSYKGGTGKTTIASNFAVLLAKKGYRVFLMDLDVYAP
                     SLQAYFEKEPIKWINDFFWNNAQVDDVLVDLTHTIDDNNDAPPIKGKMYVGFCNPKKE
                     EIYKLDGGGKQDNSKIQLLRRFVLLREQIISNYDADYIIIDTSPGIRYWSINALAVAD
                     TLFLTLKMDNLDIDGTRKMAGDIYSSFSKFGAKSYLVLNRVVGYCTPPPTITMNVANS
                     TLGPSQTTTTAGSGHNKTISIQQHESENDVGKILSKDVGMEIICSIPCYCDIQFSRRE
                     FLTVLKYPDHPFAKRIESLAEDTRLV"
BASE COUNT          497 a          305 c          294 g          556 t
ORIGIN      
        1 cctctttttt cagtagtatc attggtggtc tttaaggcat ctatagtttg acgtatgcca
       61 gttaatgttt gtgttagttt gtcttcaaat ccacttgcat gataccttat tggattaacg
      121 aatctggcat tccgtgacag atctgattcc tgaatatttg aaaatgcatt tcgatattgc
      181 ttttctgtca aattcgagct tatatagata cagtaatctc cttcagaaat accgtctaga
      241 aaaaactgcc tgcaatagac acttttacct gaacctatgg ggccataaag taataagaga
      301 ccataaggaa ttatatcttt atcggtaaga gatgataaac ctggaatttg ggacctgttt
      361 gagtgatcaa cttgcaaaat attgaacctc tttattgtat atttatatga tcaaaggaga
      421 tatatagata tatatgaaaa taacctccgc ctaagttgac gagtttttcc tgaacagtcc
      481 ttttgaagat taaatgacat tgttacattc caagtttaca ccaatctagt atcttctgca
      541 agactttcaa tccgctttgc gaatggatga tcaggatatt tcagtacagt gagaaattct
      601 ctcctgctaa actgaatgtc gcagtaacaa ggaatcgagc aaataatctc cataccaaca
      661 tctttagaca gtatcttccc tacatcgttc tcactctcat gttgttgaat tgagatggtt
      721 ttattgtgac cgctacctgc agtagtagtc gtttgagaag ggcctagggt tgaattagca
      781 acattcattg ttattgtagg agggggagta caataaccta caaccctatt taacacaagg
      841 taggatttag cgccgaactt tgaaaatgag ctgtatatgt cgcccgccat ttttcttgta
      901 ccgtctatat ctagattatc cattttgaga gttagaaaaa gtgtatctgc aacagctaag
      961 gcatttatag accaatatct tatacctggg ctcgtatcaa ttatgatata atctgcgtca
     1021 taattagaaa ttatctgctc tcgcaaaagt acaaatcttc gaagtaactg tattttcgaa
     1081 ttatcttgtt tcccaccacc atcaagcttg tagatttcct ccttttttgg gttgcagaag
     1141 ccaacataca ttttaccttt aatcggagga gcatcattat tatcatctat agtatgcgta
     1201 agatcaacca aaacatcatc aacttgggca ttgttccaga aaaaatcatt aatccatttt
     1261 atgggttcct tctcaaagta ggcctgaaga ctaggggcat agacatctaa atccattagg
     1321 aatacgcgat accctttttt tgccagcaga accgcaaaat tggaggctat tgttgttttt
     1381 cctgtgcccc ctttataaga atgaaaggca atacatttag tcatgtcttt taaaggtttt
     1441 gcgatctgtg tatatagaca ttgtgataga atatgggtct attatagtat ggttgcatta
     1501 caattaatgc tgaattttgc taagacaata caaataaggg ggtaataacg ggtgaacact
     1561 ccattttcgc tttcacaata tcttgaccag tatctgcttt tcttctgttt cttgcattct
     1621 ttacttatca gaataattgg gaaaatccaa aa
//
LOCUS       DATCMF010000130         1773 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_479500, whole genome shotgun sequence.
ACCESSION   DATCMF010000130 DATCMF010000000
VERSION     DATCMF010000130.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1773)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1773)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1773
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_479500"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            239..550
                     /locus_tag="VIL14_01605"
     CDS             239..550
                     /locus_tag="VIL14_01605"
                     /inference="COORDINATES: protein motif:HMM:NF023174.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3303 family protein"
                     /protein_id="HEY8522434.1"
                     /translation="MGLYGIYGSHTTEACPLNNAETRKLVLEHGPKIVEEANKQNIKI
                     INQYHSGLEHTFLWVVEANDAHLIQSFFATNVGKNNALKIVPLITYSDVIEQCKKLEN
                     F"
     gene            1005..1589
                     /locus_tag="VIL14_01610"
     CDS             1005..1589
                     /locus_tag="VIL14_01610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522435.1"
                     /translation="MVQIEIKSIIITAATIVIILTLTLPSLDLNGFSQTLERLDFQPY
                     SNIDKSEIKDNTQPELNAQIQLVPHENEYLDDYYQVANFGFVLSNSSQLCPSGNCKYE
                     LEGGTMQAERISGERSLTGRITIDAGESKNMIELHASWKTVKELEQNGENVKVIKGIL
                     DLGTSQFNPENKYQINGTLSKDGENYLLDIKGIK"
BASE COUNT          667 a          265 c          254 g          587 t
ORIGIN      
        1 aagtttttaa taacaaaagc taaatactat gagctaaata ctattaatag aatcctacta
       61 catagaaggc tctactcccg acgggctagt agtttacagg gggctcatct attttttgta
      121 ttattttaat agtacaatac aatattttat tattccttaa aagatataga agtcatatta
      181 ataatataaa tgaaaataaa ccaaacaata tttataaatt ttaatcctat aaagaactat
      241 gggcttatat ggaatatatg gcagtcacac tacagaagca tgtccgttaa ataacgctga
      301 aactcgaaaa ttagtattag aacatggtcc taaaatagtt gaggaagcaa ataaacaaaa
      361 tataaaaata attaaccaat atcactcagg tttagaacac acttttttat gggtcgttga
      421 agctaatgat gctcatttaa tacaatcatt ctttgcaaca aatgtaggta aaaacaatgc
      481 attaaaaata gtacctctca tcacgtactc tgatgttatc gaacagtgta aaaaattaga
      541 aaacttctaa atatttgtag tatcttgaat taaaatcttt tcattttatt cagaagtcaa
      601 tttttttata atacgtttta ataccctgta agatatgata ttttttatca gctatctctg
      661 gaatattgta aaagtcaatt tgttgtcagt aatcaaaaca aatactgtta gagattccat
      721 acctttataa cgttttggta ctatacctct gacaatagta cacacaaaca aaatctgaat
      781 gagttctaac aaagaaacct atgtcaccac atgcctctag ttccattgtt attctctgtt
      841 ttcgtcttac cttattcttg ttgtttttat cattactatt agatataaat tcaactatga
      901 atttatcccc tcagagcaat aacttgataa tcttataagg tttagttcgc cttatcttct
      961 attggtattt caaattttat ataggaatat ttgctgttat tcttatggta caaattgaaa
     1021 ttaaatcaat tattataact gcagccacta tcgtgataat tttaaccttg acattaccaa
     1081 gcctagattt gaatgggttt agtcaaactc tagagagact ggactttcaa ccttattcta
     1141 acatagataa aagtgaaata aaggataata ctcaacccga acttaacgcc caaattcaac
     1201 tagtaccaca tgaaaacgaa tatcttgacg attattatca agttgctaac tttggatttg
     1261 tgcttagtaa ttccagtcaa ttatgtcctt ctggtaattg taaatatgaa ctcgaaggcg
     1321 gaactatgca agcagaaagg atttcagggg aaagatcatt aacaggaaga ataaccattg
     1381 acgcaggaga gtccaaaaat atgatagaat tgcatgcttc ttggaagaca gtaaaggaac
     1441 ttgagcaaaa tggtgaaaat gttaaagtca taaaagggat attagacctg ggaacaagtc
     1501 aatttaatcc agaaaacaaa taccaaatta atggtacact ttcaaaagat ggtgagaatt
     1561 acctattaga tataaaagga ataaaataat taatcttaaa tgatttttgt atatatacat
     1621 aatcttagta ttaacagtta agctattgca tgttttcatc ttcatctttt gtttaattca
     1681 gaaatgacta gataaaaaaa ttcattaaca aaccataaaa ccatattaag agtttcatac
     1741 tcttggcgtg gagtgaggat ttaaaaaaat gaa
//
LOCUS       DATCMF010000131         1558 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_82040, whole genome shotgun sequence.
ACCESSION   DATCMF010000131 DATCMF010000000
VERSION     DATCMF010000131.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1558)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1558)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1558
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_82040"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(95..349)
                     /locus_tag="VIL14_01615"
     CDS             complement(95..349)
                     /locus_tag="VIL14_01615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522436.1"
                     /translation="MSTADIPINDSNIQEIIKKEARGLGDDSDFGEVQEILGEYIITK
                     KGNVSKDIFHFPKNLIERFDGYTVYFKITKDESKQYKRDY"
     gene            615..1109
                     /locus_tag="VIL14_01620"
     CDS             615..1109
                     /locus_tag="VIL14_01620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522437.1"
                     /translation="MFSEIKPKSCSYGCGVEIYWNVEENTYFELYSRKKHICPNRIAY
                     NNNNKKPSAINPPTYAMKPKYYNDNKISDLSNNNKQQATKPKMDNSLELLIGTIQNIQ
                     KQYEALSDIVRDLGGKVHGSQRGDRESKSGLIDLMVYYEVPQGKREEVKQRLKNYVLT
                     VNSS"
BASE COUNT          584 a          207 c          217 g          550 t
ORIGIN      
        1 tataacattt aagggtatat ttttctctta tttttgtcgc cctttttcct tattttgtaa
       61 aagtattatg aattttggct tgttgaaaaa ttaatcaata gtctcttttg tattgttttg
      121 attcatcttt tgttatctta aaatatacag tgtagccatc aaatcgttct attaaatttt
      181 tagggaaatg gaatatgtct ttggatacat tgcctttctt tgttatgata tattctccta
      241 aaatctcttg aacttcacca aaatcagaat catctcccag ccctcttgct tcttttttta
      301 taatttcttg tatattagag tcatttatag gaatatcagc cgttgacata ttctctatgg
      361 ttcaacatta tatataatgc cttcaattaa agtaaagaga taaatatatt aaaaaatggc
      421 aaatttttag atgtttagta atctttgtgc ctgtactaaa gtaacaattt taatataaaa
      481 taacttatca ttaaaagaaa tcaatattat agtgaatact tttagactac tatgttaaga
      541 ttatttatat tttaaaggaa attagattta ttcatttaac aaagaactat aaagtatatg
      601 agaaataaat tggtatgttc tccgaaataa aaccaaagag ttgtagttat ggctgtggtg
      661 tagaaatata ctggaatgtt gaagagaaca cttactttga attatattca agaaaaaaac
      721 atatttgtcc aaatagaata gcatataata ataataataa gaaaccatca gcaattaatc
      781 caccaactta tgcaatgaaa ccaaaatatt ataatgataa taaaatatct gatttatcaa
      841 ataataataa acaacaagca acaaaaccaa agatggataa ctctttggaa ttacttattg
      901 gtactataca aaatatacaa aaacagtatg aggcactatc agatattgta agagatctag
      961 gtggtaaagt tcatggttct caacgaggag atagagagtc taaatctgga ttaatagatt
     1021 taatggtata ttatgaagtt ccgcaaggca agagagagga agtaaaacag agattaaaga
     1081 actatgttct tacggtcaat tcgagttaat actctcatat atttgtagga cggcagccct
     1141 caaataaata cggatcatta ttgaattatt acaatatttt aaaagtggtg attgtggctc
     1201 agaactaaca atcttctatt aactacttcc ttataataac cgtatcttgg ttattagttc
     1261 tcattattat attctatctt gtttttcaat tgaacattat gagacaaata gtcttatcat
     1321 ttagatttac tatagtttta gaagaattag aaatattgac actctaaata agaattgtta
     1381 gataaattta atgagataaa gacccctgac tacatcacat agccaggtgg ttcaatacga
     1441 acctattcat actccaccac cttgttttat gataacaagg aaacaatatt tactgaatta
     1501 gacaagatat atttctaatc acacctttaa agatgatgag aaagaaaata agttaaga
//
LOCUS       DATCMF010000132         1977 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_82249, whole genome shotgun sequence.
ACCESSION   DATCMF010000132 DATCMF010000000
VERSION     DATCMF010000132.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1977)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1977)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1977
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_82249"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            407..640
                     /locus_tag="VIL14_01625"
     CDS             407..640
                     /locus_tag="VIL14_01625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522438.1"
                     /translation="MPLTKKYYNYNHNTWKKGNILFILSLIILAFGILLLIIGYGIYP
                     QSTKNISSGDDLITIPKIGHINIIKDSNKYFVF"
     gene            1480..1860
                     /locus_tag="VIL14_01630"
     CDS             1480..1860
                     /locus_tag="VIL14_01630"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY8522439.1"
                     /translation="MTKRILLVDDEPDVTFTIKKIVEDNGFKADSFNDPILALNNYKV
                     NFYDLVILDIKMSKMDGFELYLKIREKDPKVKICFLTVIEMFNEEFRKIRLALGKTIN
                     EDYFIQKPIKTEDLIKKLTSIMNI"
BASE COUNT          771 a          246 c          255 g          705 t
ORIGIN      
        1 tcagaagaag agatagaaga gaaatacgta aacaaggata atatttttga taagcccacc
       61 tatgatagtc gctctacatg ttaaacggct acactagcaa tcaacttata attagtttct
      121 tttcactctt ggaatacgca atttttattc tctaatattt ttattgtgtt atttgactca
      181 tgttggtggt ttgcaactat tcttaaagat gtatttaaaa ttaatcaatc tcctaggtgt
      241 aaaaaaaaga aaatttatgt tgaaagaata ataagataaa aaataattat aattacagat
      301 tattcaaatt tatttgattc cgtggctgtt cgtttaatat ataaaataaa attatcgatt
      361 aacctggttt accatgtttt aaatatttta ttatagaagg aaatctatgc cattaacaaa
      421 aaagtattat aattacaatc acaatacttg gaagaagggt aatattttat ttattctatc
      481 actaattatt ttagcattcg gaattttatt gttaatcatt ggatatggta tttatccaca
      541 atctacaaag aacatttctt caggcgatga cctgataaca attccaaaga ttggtcatat
      601 aaatataatt aaagatagca ataaatattt tgttttctga actttctttt tacgaatgct
      661 agagcgaaca taattacctt tgttatccca tttgtcattc tactcatgtg gctacgtgaa
      721 agatttaaat taattcaatg ccgttacatt ctatattcaa ttataaagct cattccaata
      781 aatcagatga tactaacctt ttagacaaga ataaaatgtt ctggtatctc ctcaatacaa
      841 atattctaat gaaaacagtg aagattcgta atccatgttt ctgctaatgt tatttaattt
      901 aataattgtg ctgtggaggg gtttataaca ctctttgtca ttttaccaag gataaggatg
      961 tttgattact tcattcttga acttccatat aagacatctt ttttttattc attctttaac
     1021 agatataaat aaagaatttt agaaaactac tctttaaaag aataattact aataaagtaa
     1081 ctaatacttt ccagattatg aatgaagaca agctatgcat aataattact aatataacat
     1141 atcctaattc atatacagta tgttaaaact aaattgttat tctacaaaaa ttatttgttc
     1201 tttaataaag tataaagata tacatttaat gcatgataac tcattactat gcgaccaggc
     1261 tttatgtatt accccaaatc agcctgtatc tttgaattaa ttgtaggaaa atacactaat
     1321 tcttttattt tatccagatg atagtcaaaa agaacagaaa agatttgaag aaaatatagg
     1381 attagaaaat aattctaacg atagaggata tactttttat gttatatttt gataattata
     1441 gatagaggtg taatcaagcg gaagtggtgt ccaataacaa tgactaaaag aattttatta
     1501 gtagatgatg aacctgatgt aacttttaca ataaaaaaaa ttgtagaaga caatggattt
     1561 aaagcagata gttttaacga ccctatttta gcattgaata attacaaagt caatttttat
     1621 gatttggtaa ttcttgatat aaagatgtca aaaatggatg gattcgaatt atatctaaaa
     1681 ataagagaaa aagaccctaa agtaaaaata tgttttttaa ctgtaattga aatgttcaat
     1741 gaagaattta gaaaaatacg attggcattg ggtaaaacaa tcaatgaaga ctactttatt
     1801 caaaagccaa tcaaaactga agacctaatt aaaaaattaa cttctataat gaatatttaa
     1861 aataacatgg atagatttat atatattaag atactccaag tctttaatat tctcataatt
     1921 tgagattttt caatatacca taattaaaaa agattaacac ataattctac aaataat
//
LOCUS       DATCMF010000133         2717 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_82274, whole genome shotgun sequence.
ACCESSION   DATCMF010000133 DATCMF010000000
VERSION     DATCMF010000133.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2717)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2717)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2717
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_82274"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            162..236
                     /locus_tag="VIL14_01635"
     tRNA            162..236
                     /locus_tag="VIL14_01635"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:197..199,aa:Thr,seq:tgt)
     gene            complement(265..1161)
                     /locus_tag="VIL14_01640"
     CDS             complement(265..1161)
                     /locus_tag="VIL14_01640"
                     /inference="COORDINATES: protein motif:HMM:NF013245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEY8522440.1"
                     /translation="MTFPRCNNFNGTKILKKYLFIIIDYKKPSLTKMILDNANRYFKN
                     YIISLNYNAYMLKVYQILIIAYTTGILWLRRNPLSLIFTAITPFSLLFVLFIISDGQY
                     TQYAISGSLVMALVGYGLALGQDITYYKTEYKIQDMFVASPISPLTYMTGLALSEILF
                     GFPALVVLLFLIFYIGVSFLYIPLLIFIILIVWISTSSMGFFLSSHMLHMKNATQIIS
                     FVNVFLAILPPVFYSINKLPEILQYVSYIAPTTHASLMIQYAMGFDTPENWSILIGIS
                     VQLVYAIGFITLAKVHALWRET"
     gene            1142..2002
                     /locus_tag="VIL14_01645"
     CDS             1142..2002
                     /locus_tag="VIL14_01645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HEY8522441.1"
                     /translation="MHRGKVKDVYYNGENSNNTLLFVFSDRISAFDVNMMQDIPKKGE
                     VLCKFAKFWFDNLDVQNHMIKTIDANKMLVEQLSMIPIECVVRGYFYGSLIDRYNNNE
                     IDWKNSQDFQILSHNFDPVIASELPSPVFDPTTKSLEHDIPISENEIISSNILSQRDF
                     DFLKDKSKQLYLKMSKIVNLAGFLLADVKFEFGFNRKGEIVLGDSLGPDEYRIWKKVD
                     YEKGSIQESYDKQILRDWLTNIGFKKKVNEQKSSKTKPPPPKLPSSLIEKISKRYILS
                     YEMITGDKII"
     gene            complement(2023..2451)
                     /locus_tag="VIL14_01650"
     CDS             complement(2023..2451)
                     /locus_tag="VIL14_01650"
                     /inference="COORDINATES: protein motif:HMM:NF015960.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF371 domain-containing protein"
                     /protein_id="HEY8522442.1"
                     /translation="MVTDEIKFYGHPNVLATHPRTIEITKDNYLTKEGNCIIGINANK
                     ACNEIDPKLRNLITKDNIPIKFEIIVGTLSFQINGFGNSKLTLSNPHDIVIRTSTYIS
                     TRTASIKCNKAAIHIPRDIIVLLQDSNAQGSLIISAHESR"
     gene            2515..>2717
                     /locus_tag="VIL14_01655"
     CDS             2515..>2717
                     /locus_tag="VIL14_01655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522443.1"
                     /translation="MLPAAAGYDRAITVFSPDGRLYQVEYAIETVRRGTLALGIKCKD
                     GVLLAVEEKTRKLQISDVTQKIF"
BASE COUNT          980 a          381 c          449 g          907 t
ORIGIN      
        1 tctccttcag ggtcatttat aaaagatttg ttttctattg taacgataac attaaattct
       61 ttattagtca ataatatttt ctgattatta tagctactta aatatatttt aattattggc
      121 aaagaattaa ttatagtaat aatacaaaat cgatgattaa tggtcatgta gctcagcctg
      181 gccagagcga aggttttgta aaccttaggt cgtgggtcca aatcccacca tgacctacga
      241 gtaaaaaatt actttcgaca tcatctaagt ttctctccat aatgcatgaa cttttgctaa
      301 ggtaataaac ccaatagcgt atactaactg aacggatatt ccaataagaa tagaccaatt
      361 ttcaggagtg tcaaatccca tagcgtattg aatcatcaag gatgcatgag ttgtaggagc
      421 aatataggaa acatattgaa gaatttcggg gagcttgtta attgaataaa aaacaggtgg
      481 taatatagct aaaaaaacat taacaaaaga tattatctga gtcgcatttt tcatatgtaa
      541 catatgtgaa gataaaaaga aacccatact agaggtagag atccacacaa taagtattat
      601 aaaaataagt aatggaatat acaggaagga aactcctata taaaaaatca agaacaataa
      661 aaccactagc gctggaaatc caaataaaat ttctgatagt gctagacccg tcatatatgt
      721 taatggtgat ataggagagg caacaaacat atcttggatt ttatattcgg ttttataata
      781 tgtaatatcc tgacctagtg ctagtccata accaactaaa gccattacta aacttccgct
      841 tatggcatat tgcgtatatt gtccatcgct aataataaat aaaacaaaga gtaatgaaaa
      901 aggggtaatt gcagtaaaaa ttagtgaaag agggtttctt cttaaccata agatacccgt
      961 tgtatatgct ataattaata tctgataaac tttcaacata taggcattat aatttaaact
     1021 aattatgtaa tttttgaaat agcgattcgc attatctaaa atcattttag ttaatgatgg
     1081 ttttttataa tcgataatta taaaaagata tttttttaat attttagtac cattgaaatt
     1141 attgcatcga ggaaaagtca aagatgtata ttataacggt gagaatagca ataatactct
     1201 gttatttgta ttttctgaca gaatatctgc atttgatgtt aatatgatgc aggatattcc
     1261 aaaaaaaggg gaagttttat gtaagtttgc aaagttttgg tttgataatc ttgacgtcca
     1321 aaatcatatg attaaaacta ttgatgccaa taaaatgctt gtcgaacagc tatccatgat
     1381 tccaatcgaa tgtgtggtca gaggttattt ttatggaagt ctaattgata gatataataa
     1441 caatgaaatt gattggaaaa attcgcaaga ctttcaaatt ttgtctcata attttgatcc
     1501 agtaatagct tcagaactac catcgccagt attcgaccct acaactaaat ctttagaaca
     1561 tgatattcca atttctgaaa atgaaataat ttcatctaat attttatcac agcgtgattt
     1621 tgattttttg aaagataaat ctaaacaact ttatctcaag atgagcaaaa tagtaaacct
     1681 agcgggattt ttacttgcag atgtaaaatt tgaatttgga tttaatagga aaggagaaat
     1741 agtcttggga gattctcttg gcccagacga atatagaata tggaaaaagg ttgattatga
     1801 aaaaggatct atacaagaaa gttacgataa acaaatttta agagattggc tcacaaatat
     1861 cgggtttaag aaaaaagtta atgaacagaa atcttctaaa actaaacctc cacctcccaa
     1921 attgccttca agtttaatag aaaagatttc aaaaagatac attctttcgt atgaaatgat
     1981 aactggtgat aaaattatat aatcttatag cttttttatc ttctatctag attcatgtgc
     2041 ggaaattatt aaggatccct gggcattact atcttgtaat aacactatta tatctctagg
     2101 tatatgaatt gcggctttat tacactttat cgaagctgtt ctggtggata tataagtact
     2161 agttctaatc acaatatcat gaggattgct caacgttaac ttgctgtttc cgaatccgtt
     2221 gatttgaaat gataatgttc caacaattat ttcgaatttt attggaatat tatcctttgt
     2281 tatcaagttt cgtaattttg gatctatctc attacaagcc ttattagcat tgattccgat
     2341 aatacaattt ccttcttttg tcagataatt gtcttttgtt atttctattg ttcgcggatg
     2401 tgtagcgaga acatttggat gaccataaaa ctttatttca tcagttacca atttgtaaga
     2461 aactgcgtta ataaggtaaa tttaaattaa acactggcaa gtagtaatat cgaattgtta
     2521 ccagcagcag caggttatga tagagctata acggtatttt ctcctgatgg aaggttatat
     2581 caggttgagt atgcaattga gacagtaagg agaggtactc ttgctttagg aataaaatgt
     2641 aaagatggag ttcttttggc agttgaagaa aaaactagga aattacaaat ttctgacgtg
     2701 actcaaaaga tcttcca
//
LOCUS       DATCMF010000134         1607 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_82416, whole genome shotgun sequence.
ACCESSION   DATCMF010000134 DATCMF010000000
VERSION     DATCMF010000134.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1607)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1607)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1607
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_82416"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            336..938
                     /locus_tag="VIL14_01660"
     CDS             336..938
                     /locus_tag="VIL14_01660"
                     /inference="COORDINATES: protein motif:HMM:NF015674.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF308 domain-containing protein"
                     /protein_id="HEY8522444.1"
                     /translation="MNKSPKWVRATQIVLGAVAILLAIVALTNSGLTILLILIAIVLV
                     IAGFEKTITGLFITHNLRYFTIGLGVLTIILAGFALTYPIAAARVLLLILGFSLMVDG
                     FSRISDGLTNKSDKRLVRGFTIAVGILAIIISVGINIIPFWGKLFISKLIAVDLIIIG
                     IQMITSGTVNVEAGKKKIKEQVKEKVKKIFQGHERSEEKK"
     gene            complement(1203..1391)
                     /locus_tag="VIL14_01665"
     CDS             complement(1203..1391)
                     /locus_tag="VIL14_01665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522445.1"
                     /translation="MAKLLCGTGKCNKVIDVSISDQNLKHKCTNCNTIFCSEKHQKEH
                     TCGFTIKEMQEIGQYYKI"
BASE COUNT          559 a          212 c          271 g          565 t
ORIGIN      
        1 cctgttttga attctttaaa taattcatta ggatcggttg aactaatagt ttgtgctttt
       61 gcattttcaa aatgtagtat agaaatggaa agactgagaa ctattaaaac tactaaaata
      121 gattttgtat agacatctaa attcataagg ttaaaaattc aatacttgta tatattttcg
      181 atggtttcag atttatttat gtgaataaaa agaaaattaa tggtttgaga ttgtattata
      241 taatgtaatg ctgcttcttt ggttaattct gaacagaatg tattaattat tggatataga
      301 actctattaa atcaaggtct gtaatagcag tagctatgaa taaatctcca aaatgggtga
      361 gagcaaccca aattgtactt ggtgctgtag ctatcttact tgcaattgtt gcactgacaa
      421 attcgggtct aacgatttta ctcattttaa tagctatagt tctagttatt gcaggatttg
      481 aaaaaactat tactggattg tttattactc ataacttacg atacttcact ataggattag
      541 gagtattaac tattattcta gcaggatttg cattgacata tcctatagca gctgctagag
      601 tacttttatt aattttggga ttttcattga tggtagatgg gttttcacga atatctgatg
      661 gattgaccaa taaatctgac aagagactag ttagaggatt taccatagca gtaggaatat
      721 tagccataat aatttctgtt ggtattaata tcattccttt ctggggtaaa ttatttatca
      781 gtaaattaat agccgtagat ttgataatta ttggaataca gatgattaca tctggaactg
      841 ttaatgtaga agctggaaaa aagaagataa aggaacaggt aaaggaaaag gtaaagaaaa
      901 tctttcaagg gcatgaacgg agtgaagaaa agaaatagca cgtaaagcaa attcattgta
      961 agttatttcg aataacaatg atgctataga ctttacatga tatggttagg attacaggca
     1021 aaaatgaccg tcaaacctct gagcccgtcc tgtaacaata ttaacctcca tacaaataca
     1081 tcagcgtggg agcaacatca cttcactaaa tttagaagaa tcctgaataa attagtagta
     1141 gaatcttgct tggacaagat taattttaca aataatacaa ataggaggat tattgttaga
     1201 gttcatattt tataatattg tcctatctct tgcatttctt tgatagtaaa tccacaagta
     1261 tgttctttct ggtgtttttc agaacaaaaa atagtgttac aattagtgca tttatgtttt
     1321 agattctggt cagatattga aacatcaatt actttgttac atttacctgt tccacataat
     1381 agtttagcca ttttctatcc tttattttac tactaattat tatttttgtt tgtatttaaa
     1441 gaatgtcata agcacctgaa agaatataca attccgttca actgccaagt atttgattca
     1501 aatactgatc cagttaaaac accaatatta ggagttgaca aaaatatatt ccagaagcag
     1561 atgaaatcaa ttattctgtt cagtgttcga tgttaagagg ttatact
//
LOCUS       DATCMF010000135         1507 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_348021, whole genome shotgun sequence.
ACCESSION   DATCMF010000135 DATCMF010000000
VERSION     DATCMF010000135.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1507)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1507)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1507
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_348021"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(159..722)
                     /locus_tag="VIL14_01670"
     CDS             complement(159..722)
                     /locus_tag="VIL14_01670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TATA-box-binding protein"
                     /protein_id="HEY8522446.1"
                     /translation="MPQTKPIVSIENVVASATINQTVNLNQITQIFPDVEYHPDQFPG
                     LVFRLKSPKTATLIFSSGKMVCTGAKSEDQAIKAVKSVVQKLKKGSIQIENEPIIEIQ
                     NIVASASLGGKIHLELAARVLPRSMYEPEQFPGLIHRMLDPKTVILLFASGKLVCTGA
                     KKEAEVYRAVHNLHNLLEEKNLMIYEG"
     gene            859..>1507
                     /locus_tag="VIL14_01675"
     CDS             859..>1507
                     /locus_tag="VIL14_01675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lyase family protein"
                     /protein_id="HEY8522447.1"
                     /translation="MSFRIDKDSLGEFKVPDNAYYGPFTARAIEQYKVTGNKSHLNLI
                     KAYVMIKRSAALTNFELQILDEKIAKVIIQACDEILSGQFLDHFVVDAINSGAGTAVN
                     MNINEIIANRALEILGKSKGEYSIISPNDHVNMSQSSNDTFPTAMHIAILMNTNLLLR
                     SLDLMIASLKDKSLHFKNIIKIGRTHLMDALPVTLGSEFEVYAYALERAKEEIINS"
BASE COUNT          520 a          220 c          244 g          523 t
ORIGIN      
        1 aaggatttta tgtatccttt aaaagttaca atagaataat aaaaaatttt taatacaaat
       61 ggaatcactt tccatttttt taactatcaa cgagttagca aatattatct ataaaaaaga
      121 gtggataaat aaagaaaaaa tgtagcattt caaaataatt acccttcata tatcataagg
      181 ttcttttctt ctaatagatt atgaagatta tgtacagcac gatatacttc tgcttctttt
      241 ttagcccctg tacaaactaa cttcccactt gcaaacagaa ggataactgt tttgggatct
      301 aacattctat gaattaatcc aggaaattgt tcaggttcat acatactgcg aggaagtact
      361 ctagcagcta attccaggtg aattttgcct cctaaacttg cggatgcaac aatattttgt
      421 atttcaatga tgggttcgtt ttcaatttgg atacttcctt ttttcaactt ttgaacgaca
      481 cttttgacgg ctttgattgc ctgatcttct gatttggctc ctgtacatac catttttccc
      541 gagctaaaaa ttaaagtagc agtttttgga gatttaagtc gaaaaacaag accaggaaat
      601 tgatcggggt gatattcaac gtctggaaat atttgtgtga tttgatttaa attaaccgtt
      661 tgatttatag ttgctgaagc aacaacattc tcgatactta caatgggttt agtttgcggc
      721 atactggtat gcggtttgtg gactatataa atatattata taaactttta ttaaaatgat
      781 tttagaaatc agtattgttt aacttattct gttgtagtta actagtatta tataaacgag
      841 aattttatag tcattataat gtcatttaga atagacaaag attcattagg agaatttaaa
      901 gttcctgata atgcatatta tggtccattt acagctcgtg caatagaaca gtacaaagta
      961 actggtaata aatctcattt aaaccttata aaagcttatg ttatgattaa aagatcagca
     1021 gcattaacta attttgaatt acaaatttta gatgagaaaa ttgccaaagt aattattcaa
     1081 gcttgtgatg aaattttatc aggacagttc ttagaccact ttgttgtaga cgctattaat
     1141 tcaggcgctg ggactgctgt gaatatgaat ataaatgaaa ttattgcaaa tcgggcctta
     1201 gaaattctgg gaaaaagtaa aggtgaatat agcattatta gtccgaatga ccatgttaat
     1261 atgtctcaat caagtaatga tacatttcca acagcaatgc atattgcaat attaatgaac
     1321 actaacttac ttctaagatc tcttgattta atgatagcat ctttgaaaga taaatcttta
     1381 cattttaaaa atatcataaa aattggacgg actcatctta tggacgctct tcctgtaaca
     1441 ttaggctctg agtttgaagt atatgcctat gcactagaga gagctaaaga agaaattatc
     1501 aatagcc
//
LOCUS       DATCMF010000136         3059 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_480141, whole genome shotgun sequence.
ACCESSION   DATCMF010000136 DATCMF010000000
VERSION     DATCMF010000136.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3059)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3059)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3059
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_480141"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            480..1241
                     /locus_tag="VIL14_01680"
     CDS             480..1241
                     /locus_tag="VIL14_01680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522448.1"
                     /translation="MYFDKYIFVVLFIGFVFIITIESSLSIQLPDFLTNNSIVEEALA
                     QPSSPPTNTSIIINNNSGEQNKSKMIKAFGHFANNQLKDGIVTWIQGGFWNLNINNIT
                     NSNDNNNNIHITNYNGIANFIANFTMIKPDGSLSHNHHIQNFISDKVILTDKDIVVMG
                     IADIFSDDNNNEYKNVPLTIHLMGNKVLGLTMDVGKTKGHFSSSNEMFGTLISGIGLD
                     TSAVDNSSIHKTMMHHDTAATNDTEEKEPMTMMQH"
     gene            complement(1320..2036)
                     /locus_tag="VIL14_01685"
     CDS             complement(1320..2036)
                     /locus_tag="VIL14_01685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522449.1"
                     /translation="MVHDLLVRGFDDIIHSQLGELAKEKGVSINSIVKDAVDKWLKQQ
                     SDIPKKHYLLIYSNDDSILGLLKSMDRLAKESGLFRCFCGPPSTNSSKLLSKLNWYNA
                     IVMPYYYDEHETWKQQQQKQNQSQNNKSIMRYCSEVMENIVAGNNVNNKQVCCIDFLI
                     NDIAKSSLHQALTIEKAYDDSRIPGLMYCTYKTETLLSAEIKDLVELFEGHDQVFILK
                     QDDVYKLHITKENIHKLFLN"
     gene            complement(2305..2688)
                     /locus_tag="VIL14_01690"
     CDS             complement(2305..2688)
                     /locus_tag="VIL14_01690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522450.1"
                     /translation="MSIVSKTLTLRVPSNIIYRALKDTRLEILFPEFFIGVERKVVMD
                     KTNKEICFNTITQGKQIEIIETFKFKISNNNGTVVEYITDTKSLEENNIALESIVQTH
                     VANILYSLLMLETGYINGILERKRN"
BASE COUNT         1134 a          402 c          379 g         1144 t
ORIGIN      
        1 gtcattctga tgaaagtgaa gaatatccaa ctgaaactgg acatatagaa taagaagaaa
       61 aataaatatt accttcaaaa ataattttcc tttttttatt cacttttctt atactttaaa
      121 atttaaataa aataaaatca tttcattatt cttttatttc tttttcaata aattctgtct
      181 catcaaagaa tgtcgcattt tgtgatatca gaagatgaat atgatgaact tacggactaa
      241 gccataaaac cttcttcatt atatatagaa ttgaatatgt cgaaaataaa aatggaatta
      301 acttgatttt caaaataaac aaccaagttt tttcttttat aatattgtaa atgaaatatg
      361 gagacatttg gcaatcgtta gttgaataat atatatagaa aaagaatgta gaagattttg
      421 gagaatagga atttataaga tatcagtata aaactaacac acaaatgaga aattttagat
      481 tgtattttga caaatatatt tttgtagtat tattcattgg atttgtattt ataataacaa
      541 tagaatcatc attatcaata caattacccg attttttaac aaataatagc attgtagaag
      601 aggcattagc acaaccatca tcacctccta caaacacttc aataataata aataacaatt
      661 caggagaaca aaataaatct aaaatgataa aagcctttgg acattttgca aataaccaat
      721 taaaagatgg aattgttaca tggattcagg gaggattttg gaacctgaat attaataata
      781 taactaatag taatgataac aataacaata ttcatataac aaattataat ggtattgcta
      841 actttatcgc taattttaca atgataaaac cagatggtag tctttcgcat aatcatcata
      901 ttcagaattt tatttcagat aaggtcatac ttactgataa agatatagtt gtaatgggaa
      961 tagcagatat cttttctgat gacaacaata acgaatacaa aaatgttcct ttaactattc
     1021 atcttatggg taacaaagtt ttaggactta ctatggatgt tggtaaaacg aaaggacatt
     1081 tttccagctc aaatgaaatg tttggaacat taatcagtgg aataggattg gatacatctg
     1141 ctgttgataa ttcttctatt cataaaacaa tgatgcatca tgatactgct gcaacaaatg
     1201 atactgaaga gaaagaacct atgactatga tgcaacattg aaattttctt tatttgatca
     1261 acttaaagaa tggaagttaa gacaagtata aaataaaaaa ataaaaaatt taaacattat
     1321 taattcaaaa aaagtttatg tatattttcc tttgtaatat gaagtttata aacatcatct
     1381 tgttttagta taaagacctg atcatgtcct tcaaacaatt ctacaaggtc ttttatttct
     1441 gcacttaaca aagtttcagt cttgtatgta caatacataa gtcctggaat tctactatca
     1501 tcataggctt tttcaattgt tagagcttgg tgtaatgaag attttgctat atcatttata
     1561 agaaaatcaa tgcagcaaac ctgtttatta ttgacattat ttcctgctac tatattttcc
     1621 ataacctcac tacagtacct cataatgctt ttattatttt gagattgatt ttgtttttgt
     1681 tgctgttgtt tccatgtttc atgttcatca taataatagg gcattactat agcattatac
     1741 caatttagtt tagataataa tttagaggaa tttgtagaag gaggaccaca aaaacatcta
     1801 aataaaccac tttcttttgc aagtctatcc atagacttta gtaatcctaa tatggaatca
     1861 tcattagaat aaattaaaag ataatgtttt tttggaatat ctgattgttg cttaagccat
     1921 ttgtcaaccg catcctttac aattgaattt atagaaacac ctttctcttt agctaattct
     1981 cctaattgtg aatggattat atcatcaaat cctctaacta atagatcatg caccatttct
     2041 atgttaatac tgtaaaatta ttggcccaga tatatatgtt ttagctattt gatatcgtga
     2101 tatcttttta tagcatttat agaatgatat cataatatag aatgcatcga tttgttagaa
     2161 acttattcta taaaaattag aaaaaaattt gattacaacc atcccaaaga tattttataa
     2221 aatgaaaatt attacaaaaa aataattcct tatggttttc attattatca tttgtttttg
     2281 ttacttacat tcatattgaa ttatctagtt tctttttctt tctaatattc cattgatata
     2341 tcccgtttca agcatcaaaa gtgaatataa aatattagct acatgtgtct gtactataga
     2401 ttctaatgct atgttgttct cttctagact ttttgtatcg gtaatatatt ctacaactgt
     2461 tccattattg ttagaaattt taaatttgaa tgtttcaata atttcgattt gttttccttg
     2521 tgttatggta ttaaaacaaa tctccttatt tgttttatcc attacaactt ttctttctac
     2581 acctataaaa aattcaggaa aaaggatttc taaccgtgta tcctttaaag cgcgataaat
     2641 tatattggaa ggaactctta atgtaagagt ttttgaaact atagacatat ttctattttt
     2701 tctcctatta ctataagcat aatatcaaaa tttaaatttg tggatgatta ttaatgttga
     2761 gtttaccaat actataatat aacatcttat atattagata gtaatagtaa ttaactagat
     2821 gcaattttaa aatcaataat ataaaacgac aaataccttt tccaatttgt agtactatta
     2881 ctcgaagcat tatgcagtac tattatggtt ttttatttac tattatagta aatagtataa
     2941 tgtggtatgt gatttcctat ttagttagca aatattatta caaatctaaa gatatcaatg
     3001 atcaaaaata tctcattaag tatgtcttaa ataaaatcaa gaaaaaatat gatatttcg
//
LOCUS       DATCMF010000137         1525 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_348272, whole genome shotgun sequence.
ACCESSION   DATCMF010000137 DATCMF010000000
VERSION     DATCMF010000137.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1525)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1525)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1525
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_348272"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..484
                     /locus_tag="VIL14_01695"
     CDS             <1..484
                     /locus_tag="VIL14_01695"
                     /EC_number="3.6.1.55"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005777 - peroxisome [Evidence IEA];
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003986 - acetyl-CoA hydrolase activity
                     [Evidence IEA];
                     GO_function: GO:0008413 - 8-oxo-7,8-dihydroguanosine
                     triphosphate pyrophosphatase activity [Evidence IEA];
                     GO_function: GO:0010945 - coenzyme A diphosphatase
                     activity [Evidence IEA];
                     GO_function: GO:0030145 - manganese ion binding [Evidence
                     IEA];
                     GO_function: GO:0035539 - 8-oxo-7,8-dihydrodeoxyguanosine
                     triphosphate pyrophosphatase activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0009132 - nucleoside diphosphate metabolic
                     process [Evidence IEA];
                     GO_process: GO:0015938 - coenzyme A catabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="CoA pyrophosphatase"
                     /protein_id="HEY8522451.1"
                     /translation="GYTLSSVLIIFHFTDCKPKIILTKRSSLLKYHKNEISFPGGTFK
                     ETDSSLLNTALRETKEEIGLNIHSNEILGSFHTVRTLTSNFAIIPFVTFQDSIRKTKI
                     LIDEVSEVLDIPVFDLFKGLNNNFNYKNFSDSYAFRYNSEIIWGATARILKQIRDCFY
                     "
     gene            835..>1525
                     /locus_tag="VIL14_01700"
     CDS             835..>1525
                     /locus_tag="VIL14_01700"
                     /EC_number="4.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UbiD family decarboxylase domain-containing
                     protein"
                     /protein_id="HEY8522452.1"
                     /translation="MAFDSLSEYIHTLESVGKLHRVKAEVDTNLEIAEIMRRTMYSGE
                     SPAILFENVKGYDIPILGNAFGTMDLLKIALNLSDFREIGKRITDLTKLKIPSNLFDK
                     LKMLPRLSELGDYAPKYVESGAVTEIIETEKANLNSLPILKSFPNDAGKFITFGLTIT
                     KHPETGIRNIGVYRIQIVNDQKAIMHWQTHKRGAQHYELMKEYSKPIETAIVIGTDPS
                     TIFSGIAPVPEG"
BASE COUNT          569 a          201 c          233 g          522 t
ORIGIN      
        1 tggatatact ctttcttctg ttcttataat ttttcacttt acagattgta aaccaaaaat
       61 tatcttaaca aaaagaagtt ctttgttgaa gtaccacaaa aatgaaattt catttccagg
      121 aggaacattc aaagaaacag attcgtcatt attaaatact gcattaaggg aaacaaaaga
      181 ggagataggt ctaaatattc attcaaatga aatcttggga agtttccata cagtaagaac
      241 attaacttct aattttgcaa taattccatt tgttactttt caggatagta ttagaaagac
      301 taaaatatta atcgatgaag tctctgaagt attggatatt ccagtatttg atttgtttaa
      361 gggtcttaat aataatttta attataaaaa ttttagtgat tcctacgcat ttagatataa
      421 tagtgaaata atttgggggg ctacagcaag aattttaaaa caaatacgag attgttttta
      481 ttgatatttc aatataacta tatttgagtt aaatcttttt gtttatatca catctactga
      541 gaactataca gacaaaaggt aaagcttttt tttgcaaata attaataaca atgagtatca
      601 aatgataata aattaaaaca agtaataata acatgaatcc agaatttgaa tcaataattg
      661 atattctaaa ttctattgat tttcctatcc ttataggaat ttttagcttt atatctgcag
      721 taataatttg ggggataata aaaaaccatt aaaccatctt caaatccact aatttctttt
      781 tttgaagtaa aagagctgtt tttataactc tattaactag ttatttgttg atttatggct
      841 tttgatagtt tatctgaata tattcataca cttgaatctg ttggcaaatt acatcgtgta
      901 aaagccgaag tagatacaaa tcttgagata gcagagatta tgaggcgtac gatgtattca
      961 ggtgaatcac ctgctatact ttttgaaaat gtaaaaggat atgatattcc catattaggt
     1021 aatgcgtttg gaacaatgga tttattaaaa attgctctga atctctcaga ttttagagaa
     1081 attggtaaaa gaattacaga tttaacaaaa ttgaaaatac cttctaactt gtttgataaa
     1141 ttaaagatgc ttcctagatt gtctgaatta ggagactatg ctccaaagta tgtggaatct
     1201 ggtgctgtaa cagaaataat tgaaaccgaa aaggctaatc ttaattcatt accaattcta
     1261 aaatcatttc ctaatgatgc aggaaaattt attacctttg gattaactat taccaaacat
     1321 ccagaaactg gaattagaaa tattggtgtt tatagaattc agatcgtaaa tgaccaaaag
     1381 gctataatgc attggcagac acataaacga ggagctcaac attatgaatt aatgaaagaa
     1441 tatagcaaac ctattgaaac agcaatagta atcggaacgg acccctcaac tatttttagt
     1501 ggaatagctc ctgttcctga aggaa
//
LOCUS       DATCMF010000138         2311 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_480427, whole genome shotgun sequence.
ACCESSION   DATCMF010000138 DATCMF010000000
VERSION     DATCMF010000138.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2311)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2311)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2311
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_480427"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            138..1049
                     /locus_tag="VIL14_01705"
     CDS             138..1049
                     /locus_tag="VIL14_01705"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY8522453.1"
                     /translation="MPNFHRLIMLVTMIFIISGLNLISDTDYSFAQVNASSSSSLSNN
                     SQQTQESLGSTNRDAILSYEQGNKFLKAKNYDQAITSYKNAIVFDPNWAAPLIKQGNA
                     FFELANYTTAIELYDKAFAILGNLDEKVKSVDKNNGPKPYWLDIWFDKGEALTNLKKF
                     DDAIALYNKLISLDPNWANPWNSIGWALQKQGKNDEAVTAFDKATKLKPTWAKPWNSK
                     GWALYKIGKFDEALFSFDKAIALEPKWDKPWFNKGKILYQLENYPDAKQFVEHALSLK
                     ADPKTSALLESINEKIQQTSLTTTTIQ"
     gene            complement(1091..1408)
                     /locus_tag="VIL14_01710"
     CDS             complement(1091..1408)
                     /locus_tag="VIL14_01710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522454.1"
                     /translation="MTLEELREKAFYQNTIDVWIMLCNEKGVNSYDTDKYTKFISYLN
                     SQGLKMQKFPLCIKESGGTFDRGMDKARFLDALSKVYSEDASAYTIKLSPDNISMLRK
                     FFE"
     gene            complement(1536..1997)
                     /locus_tag="VIL14_01715"
     CDS             complement(1536..1997)
                     /locus_tag="VIL14_01715"
                     /inference="COORDINATES: protein motif:HMM:NF025819.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mov34/MPN/PAD-1 family protein"
                     /protein_id="HEY8522455.1"
                     /translation="MFFNFLKNRKEGSAVTANDKSKKKQVEYNRQVILTKQSADGIIT
                     YSKTWHPHEGILILQGKSKKNGEIRIDGLVVPPFASGGPYYSGFPTNELPMDLSYIGT
                     AHSHPGGSNRPSLQDLNNFFGVVSIIISYPYEYETIGAFDRNGNNISLIIE"
     gene            2097..>2311
                     /locus_tag="VIL14_01720"
     CDS             2097..>2311
                     /locus_tag="VIL14_01720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522456.1"
                     /translation="MTKNCTMILSELGPFIFDNENKLIYSKKFKNIIPSNILISNGDY
                     SEILDISDKLRRYDSVFSNDAGLISYLR"
BASE COUNT          823 a          342 c          334 g          812 t
ORIGIN      
        1 tacaatggat agatttctcc tcctttttta ttatcatgta ttgtgctcaa tataatatca
       61 taaaaaaaaa tttatgtgtg aaaatctaat aataatgaat gattgtattc actgaaaagg
      121 tctataacta cttattaatg ccaaattttc ataggcttat tatgttagtt actatgatct
      181 ttataatttc tggattaaat ttaattagtg atactgatta ttcatttgca caagttaatg
      241 cttcctcttc ttcatctcta tctaataata gtcaacaaac acaagaatct ctaggatcaa
      301 caaatagaga tgctatcttg tcttatgaac aaggaaataa atttttgaag gctaaaaatt
      361 atgatcaagc tataacatct tataaaaatg caattgtatt cgatccaaat tgggcagcac
      421 ctttaattaa acaggggaat gcattttttg aattagccaa ttatactaca gctatagaat
      481 tatacgataa agcgtttgct atattgggaa atttagatga aaaagtcaaa tctgttgata
      541 aaaataatgg ccccaaacct tattggctcg atatttggtt tgacaaagga gaagcactta
      601 ctaacttgaa aaaattcgat gatgcaatag ctttatacaa taaattaatt tctttagatc
      661 ctaattgggc taatccatgg aatagtatag gctgggcact gcaaaaacaa ggtaaaaatg
      721 atgaggctgt tactgcattt gataaagcaa ccaaattaaa accaacttgg gctaaaccat
      781 ggaatagtaa aggatgggca ttatacaaaa taggaaaatt cgatgaagca ttattttctt
      841 ttgataaagc catagctcta gaaccaaaat gggataaacc ttggtttaat aaaggaaaaa
      901 tattatatca gctagagaat tatccagatg caaaacaatt tgtggaacat gcattatctt
      961 tgaaagcaga tcctaaaact tctgctttat tggaaagtat caatgaaaaa atacaacaaa
     1021 cgtcattaac aacaacaaca attcagtaat ttttgttaat attatttttt gcagatagca
     1081 aaactaaaag ttattcaaaa aattttctaa gcattgaaat attatcagga gaaagtttga
     1141 ttgtatatgc tgatgcgtct tcagaataaa ccttagacag agcatccaaa aatctcgcct
     1201 tgtccatccc tctatcaaaa gtaccgccag attctttaat acaaagagga aatttttgca
     1261 tttttaatcc ttggctattt aaataactaa tgaattttgt atatttatcg gtatcataag
     1321 aattaacgcc tttttcattg cataacatta tccaaacatc tattgtattt tgataaaagg
     1381 ctttctcacg taattcttca agggtcataa tatgttaata ttgatataac tttttccata
     1441 tatttttact ttgttgcagt tataaattat attttatatt tgaggctact ttgataatat
     1501 tcagctaata agattgctat tggctacata ttactttatt caattattag actaatatta
     1561 tttccattac gatcaaaggc acctattgtc tcatattcat atggatagct aattattata
     1621 gaaactacgc cgaaaaaatt gttcaaatct tgtaatgatg gcctattaga accgccggga
     1681 tgggaatggg ctgttcctat ataagaaaga tccataggta actcatttgt agggaaacca
     1741 gagtaataag gcccacccga agcgaaaggt ggaactacta atccgtcaat tcgtatttca
     1801 ccatttttct tgcttttacc ttgcaaaata agaattcctt catgagggtg ccatgtcttt
     1861 gaatatgtaa taattccatc tgcagattgt tttgtaagaa ttacttgtcg gttatactca
     1921 acttgctttt ttttgctttt atcattagca gtaacagcag agccttcctt tctatttttt
     1981 aagaaattaa aaaacaatta tgaaatatga taataaaaat gatatttatg aatatctaca
     2041 atttcttcaa tcttagacat attttttaat ggctttatgt acaaaataat gacataatga
     2101 ctaaaaactg tactatgatc ctgtctgaat taggaccatt tatatttgat aatgaaaata
     2161 agttaattta ctcaaaaaaa ttcaaaaata tcattccttc taatattttg atttccaatg
     2221 gtgattattc tgaaattctt gatatctctg ataaattacg tagatatgat tccgttttta
     2281 gtaatgatgc gggtttgata tcctatcttc g
//
LOCUS       DATCMF010000139         3977 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_157549, whole genome shotgun sequence.
ACCESSION   DATCMF010000139 DATCMF010000000
VERSION     DATCMF010000139.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3977)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3977)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3977
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_157549"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..733)
                     /locus_tag="VIL14_01725"
     CDS             complement(<1..733)
                     /locus_tag="VIL14_01725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY8522457.1"
                     /translation="MSSNTINTRLSSLMWVEKYRPKRIEQIVNQKDIITSLENLIKKP
                     DEIPHLLFTGPAGVGKTTTALCVSMELLGEGWKRDTLELNASDERGIKMVRERVKEFA
                     AVIKLPSGTNKKGEYFSKDEKPYRIIILDEADEMTSEAQTALRRIIEDSSKTTRFIII
                     CNYLSQIIEPIQSRCAIFHFTRLEENDVLEYLKMICNQEKVHFQEEALSKIYKYTEGD
                     LRHSINILQTASGYGQVSIKNVTSAI"
     gene            886..1458
                     /locus_tag="VIL14_01730"
     CDS             886..1458
                     /locus_tag="VIL14_01730"
                     /inference="COORDINATES: protein motif:HMM:NF017704.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522458.1"
                     /translation="MDQIIAHNNDNVDRYDHFKKQMDFIQKFYYIKYSMEEIRIAFKK
                     NFSINIDGLDLEAKEGEIGSIPRWLAQILEENNSIEIQDTDVLIYISRSLNRERISKP
                     HDLSGIDLDFYIRANDFIKRLKDKEKESIVVSLNSFVTSRIEKIVKLAAASALSVDLE
                     KKLSAEEKELYNFIHKYSLEFKQRAVNRYE"
     gene            1451..3523
                     /locus_tag="VIL14_01735"
     CDS             1451..3523
                     /locus_tag="VIL14_01735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="minichromosome maintenance protein MCM"
                     /protein_id="HEY8522459.1"
                     /translation="MSELQKTESALVNDLEEFLRAYKDRTGNYKYFDRINNLMAANST
                     SLVVDYIDFDTFKPDLAKLITNEPDEMFDAFNRAIFNVLYEIHPDYANETQNNIKVRI
                     GNYTVQKSLREINAEVINKLVGVSGMVVRSSEVKPLAKKIGYRCLSCGEITEAQLRGL
                     VLKKPLRCGKCSEKELEMDPDTSIFIDFQMVRLQELPEDLPAGHLPHYLEVTIIGDLV
                     DQCRPGDRILLTGIVRIEQEQLSQQMKTSLFRLRMEGNNIEYLGGRTADKDSRTIERL
                     EISSEDEKHIFALARKNDAYDILISSYAPHVYGHEVIKEVILLLIVGSVTKRLEDGSA
                     RRGDINVLLVGDPGTAKSEMLKFAAKIAPRGLYTSGRGSTAAGLTAAVIRDKSGIMML
                     EAGAVVLGDQGLVCIDEFDKIKPEDRSALHEVMEQQTCSVAKGGIVATLNARTSILSA
                     ANPLYGKYDPFKNITENVNLPIPLLTRFDIIYVIRDIPEKEKDHRIASHILELHRESE
                     RTGQYLIDIDLFSKYLAYSKTMEPKLTVEAIDKIRDYYMKMRNVESEGMITVTPRQLE
                     GLVRLATARSKLLLKDYVDSEDAERAIYLIQTMLETAGVDVNTGRVDLGVLHGKPQSE
                     ISKLKLFMEVFNGLSGQDKNDVEEKNFINELIQTGRFSEDDAKNFLNKAMQNGQIYER
                     RSGFYAKA"
     gene            complement(3698..>3977)
                     /locus_tag="VIL14_01740"
     CDS             complement(3698..>3977)
                     /locus_tag="VIL14_01740"
                     /inference="COORDINATES: protein motif:HMM:NF012472.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEY8522460.1"
                     /translation="RSYRKKEWIMEALKKIEKMKSIAEYKDWTISQLAIKFILSQKPI
                     SVVIPTILSLEELELFSEMSDGLYLKEEELEQINELYENNFYLHQNIA"
BASE COUNT         1433 a          547 c          649 g         1348 t
ORIGIN      
        1 caattgcaga tgttacattt ttaattgaaa cttgtccata tcctgaagct gtttgaagaa
       61 tgtttattga atgtctcaaa tccccttctg tatatttgta aatttttgat aatgcttctt
      121 cctgaaaatg taccttttcc tgattacaaa tcatttttaa atattctaat acatcattct
      181 cttcaagtct tgtgaagtga aatattgcac atctactttg gataggttct ataatctgag
      241 aaagataatt acatataata ataaagcgag tagtcttaga actatcttca attattcttc
      301 ttaaagcagt ttgtgcctct gatgtcattt catctgcttc atcaagtatt attattctat
      361 aaggtttctc atctttacta aaatattctc cttttttatt ggttccactt ggaagtttaa
      421 ttacagctgc aaattctttt actctttcac ggaccatctt tattcctctt tcatcagaag
      481 cattgagttc aagagtatct cttttccatc cttctcctaa taattccatg gatacacata
      541 atgctgtagt agtcttaccc acacctgctg gcccagtaaa taatagatgt ggaatttcat
      601 caggtttttt tattaaattt tcgagtgaag ttataatatc cttctggtta actatctgtt
      661 caattctttt aggtcgatat ttctctaccc acattaaact cgaaagtctt gtatttatag
      721 tatttgagga catatgattt gagtacctaa tttctgtagt taatatcatc ttttctctta
      781 ttttatagta aagctggtaa taagataatt tattatacta attactcaaa tttattttgt
      841 taataagaat tattagtctt gaatgaaata atatcataaa atagattgga ccaaattata
      901 gctcataata atgataatgt tgatcgttac gatcatttta aaaaacaaat ggattttatt
      961 caaaaatttt attatattaa atactcaatg gaagaaatac gaatagcctt taaaaaaaat
     1021 ttctctatta atattgatgg acttgatctt gaagcaaaag aaggagaaat aggttcaatt
     1081 ccgagatggt tagcacaaat tttagaggaa aataattcca tagaaattca agacacggat
     1141 gttctaattt atatttcaag atctttaaat cgagaaagaa tatcaaaacc tcatgatctt
     1201 tcaggcattg acctagattt ttacattcgt gctaacgatt ttatcaaaag attaaaagat
     1261 aaagaaaaag aatccattgt ggtttctcta aattcatttg taacttctcg aatagaaaaa
     1321 attgttaaat tagcagctgc atctgcctta tctgttgact tagaaaagaa actttcagct
     1381 gaagagaaag aactttataa ttttatccat aagtattctt tagaatttaa acaaagggct
     1441 gtaaatagat atgagtgaac ttcaaaaaac tgaatctgca ttggttaatg atttagagga
     1501 attcttacgt gcttacaaag atcgaactgg aaattacaaa tattttgata ggattaataa
     1561 cttgatggct gccaattcta cctcacttgt tgttgactac attgattttg atacttttaa
     1621 gcccgacttg gcaaaactaa ttactaacga accagatgaa atgtttgatg cattcaatag
     1681 agcaatattt aatgttctct atgaaatcca tccagattat gcgaatgaga ctcaaaataa
     1741 cataaaggtc agaataggca attatacagt acaaaaaagt ttacgtgaaa taaatgcaga
     1801 ggtgatcaat aaactcgttg gagtttcggg aatggttgtt agatcatctg aagtaaaacc
     1861 attagcaaaa aaaattggtt atagatgtct tagttgtggt gaaataacag aagctcaatt
     1921 gcgaggatta gtattgaaaa aaccactaag atgtggcaaa tgttctgaaa aagaactgga
     1981 aatggatcct gataccagta ttttcattga ttttcaaatg gtaagattac aagaacttcc
     2041 agaagatctt cctgctggtc acttgccaca ttatttagaa gtaactatta taggagatct
     2101 tgtagatcaa tgtagaccag gcgacaggat cttattaact ggaattgtaa gaatagaaca
     2161 agaacaatta tcccaacaaa tgaaaacaag tctttttaga ttacgaatgg aaggaaataa
     2221 tattgaatat cttggtggaa ggactgcaga taaagatagt aggacaatag aacgtttaga
     2281 aatcagtagc gaagatgaga aacatatttt tgcattagca cgtaaaaacg atgcatatga
     2341 tattctaatt tcatcatatg ctcctcatgt atatggacat gaagtaatta aagaagtaat
     2401 tttattatta atagtaggat cagtaacaaa aagattagaa gatggatctg ctagaagagg
     2461 agatattaat gttctcttag taggtgatcc aggcacagca aaatcggaaa tgttaaaatt
     2521 tgctgctaaa attgctccaa gaggattgta tacttcagga agaggttcga ctgctgcagg
     2581 tttaactgcc gctgtaatac gagataaatc gggtattatg atgttggaag caggtgcggt
     2641 agtactagga gaccaaggtt tagtttgtat agatgagttt gacaaaataa aaccagaaga
     2701 tcgttcagct ttgcatgagg ttatggagca acaaacctgt tctgtggcaa aaggaggaat
     2761 agttgctaca ttaaatgcaa gaacttctat attgtcagct gcaaatccat tgtatggcaa
     2821 atatgatccc tttaaaaata ttacagaaaa tgttaactta ccaataccat tattaacaag
     2881 atttgatatt atttatgtaa ttagagatat accagaaaag gaaaaagatc atcgtatcgc
     2941 tagtcacata ttagaattac atagagaatc ggaaaggacg ggacaatatc ttattgatat
     3001 tgatctattt agtaaatatc ttgcttattc aaaaactatg gaacctaaat taactgttga
     3061 agctatagac aagataagag attattatat gaaaatgaga aatgtagaat cagagggtat
     3121 gattactgtt acacctaggc aacttgaagg attagtcaga ttagcaaccg ctcgttcaaa
     3181 attattatta aaagattatg tagattcgga agatgccgaa cgcgcaatat atctaattca
     3241 aactatgcta gaaacggctg gagtagatgt taatactgga agagtagatc ttggagtttt
     3301 acatggtaaa cctcaaagtg aaatatcaaa attaaagcta ttcatggaag tttttaatgg
     3361 tttatctggg caagataaaa atgatgtaga agaaaaaaat tttataaatg aacttattca
     3421 aacaggaaga ttttcagaag atgatgccaa aaacttttta aataaagcaa tgcaaaatgg
     3481 acaaatatat gaacgacgtt caggctttta tgcaaaagca tagataaatg ccattaatca
     3541 tattttgcgc atatagctgt aaaaagattt agatatataa tagtaaatac acactgttga
     3601 agatcatcat ataaattagt ataattttag gatttgatta cttttatatt aaacaatatt
     3661 tttaaaaaaa attttaggaa aaatatgtat atactattta agcaatattt tgatggagat
     3721 aaaaattatt ttcatataat tcattaattt gttcaagttc ttcttctttc aggtacaaac
     3781 catcggacat ttctgaaaat aattctagtt cttctaaact taatatagta ggtattacta
     3841 ctgaaatagg tttttgagat aaaataaatt taatcgctag ttgtgatatt gtccaatctt
     3901 tatattctgc aattgatttc attttctcta ttttctttaa tgcttccatt atccattctt
     3961 tctttctata acttcta
//
LOCUS       DATCMF010000140         1866 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_27686, whole genome shotgun sequence.
ACCESSION   DATCMF010000140 DATCMF010000000
VERSION     DATCMF010000140.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1866)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1866)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1866
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27686"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            90..899
                     /locus_tag="VIL14_01745"
     CDS             90..899
                     /locus_tag="VIL14_01745"
                     /EC_number="2.4.2.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-methyl-5'-thioadenosine phosphorylase"
                     /protein_id="HEY8522461.1"
                     /translation="MIKNLKYRSTIGIIGGTGIYDSNIFNIIDEIKIRTPYGETSDRI
                     TICTYNEKKIAFIPRHGKKHRLPPHKVNYRANIWALNELGVKVILAPSAVGSLKSQYR
                     PGDIVLPDQYIDFTKKREYTFYDGPVVCHISQSDPFCPNLRETIIKDLKNLNFKFHPL
                     GTYICIEGPRFSTKAESNYYRTLLKADIIGMTLIPECILAKEMEMCYVSISTVTDYDV
                     WAEVSVNSKEIIETLNKNVDKTKKLLLTIIPKIKEERNLCNCSNALDNALV"
     gene            complement(999..1298)
                     /locus_tag="VIL14_01750"
     CDS             complement(999..1298)
                     /locus_tag="VIL14_01750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522462.1"
                     /translation="MYGFGDNDNLKVEVFINNSSGGEVASKLTGYFVVKNQSFRFSAI
                     AFGRIGGHNISLKLSISSINKLKKMEIDPEKLQLTIQRKLIEGDVNLPPNMKSPK"
     gene            complement(1302..1715)
                     /locus_tag="VIL14_01755"
     CDS             complement(1302..1715)
                     /locus_tag="VIL14_01755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522463.1"
                     /translation="MIENDNETNDKIVYFGVININENGKNIGAIDVWRSVITKELFCE
                     EKRLGILDIAEDIGMPKIEKGKKWAVAVNRNRMGKDRWKLIKILEEGIFKFFDTDDET
                     IINTNVKNYHIIDNDWWNFLVENNINRSIEITKEL"
BASE COUNT          644 a          296 c          241 g          685 t
ORIGIN      
        1 ttttgcagtt attatagaat tagtatatct aaaaggtgca gaaatattaa gaaataaagg
       61 ctatgacgtt cgttcattgg tgaaatatta tgattaaaaa tttaaaatat agatcaacaa
      121 taggtattat tggtggaaca ggtatctatg actctaatat ttttaacata atagatgaaa
      181 ttaaaattcg tactccgtat ggagaaacct cagatagaat aactatttgt acatataatg
      241 agaaaaaaat agctttcatt cctcgccatg gaaaaaagca tagacttcct cctcacaaag
      301 ttaattaccg agcaaatatt tgggctctga atgaactcgg tgttaaagta atccttgcac
      361 catcggctgt aggaagtctg aaatcacaat ataggccagg agatatagta ttacctgatc
      421 agtatataga ttttaccaaa aaaagggaat atacttttta tgatggtcca gtagtttgcc
      481 atatttctca atctgatcca ttttgtccta atttaagaga aactattata aaagatttaa
      541 aaaatttaaa ctttaagttt catcctctcg gaacatatat ttgtattgaa ggtccgagat
      601 tttcgactaa agctgaatct aattactata gaacattact taaagcagac ataataggaa
      661 tgactctaat tccagaatgc atattagcca aagaaatgga gatgtgttat gtgtccattt
      721 ctacagtaac tgattatgac gtttgggctg aagtttctgt aaattcaaag gaaataattg
      781 aaacattaaa taaaaatgtt gataaaacta aaaaattgtt actaacaatt attcccaaaa
      841 taaaagaaga aagaaattta tgtaattgtt cgaacgcgtt agataatgca ttagtttaat
      901 caatctctgt acaaagataa ttttttacta taatagagaa caattataga atgattatca
      961 ttaatattat aattttccta aagaatatat ttgtatattt atttaggtga tttcatattg
     1021 ggaggaagat taacatctcc ttcaattaac tttctctgta tagtcaattg cagtttttct
     1081 ggatcaattt ccattttttt taatttgtta atggacgaaa tagataattt taagctgata
     1141 ttatgtcctc caatcctacc aaatgcaata gccgagaatc tgaaactttg atttttaaca
     1201 acaaaatacc cagtcaattt acttgcaact tctcctcctg aagaattatt tataaagacc
     1261 tcgactttaa gattatcatt atctccaaat ccgtacatgg tttataactc ttttgtaatt
     1321 tcaatgctcc gatttatatt gttttcaaca agaaaattcc accaatcatt atcaattata
     1381 tggtaatttt ttacatttgt attaataatt gtctcatcat cggtatcaaa gaatttgaat
     1441 attccttctt ccaaaatttt aattagtttc catctgtctt tacccatacg atttctgtta
     1501 acagcaactg cccatttttt tcctttttct atttttggca taccaatatc ctctgctata
     1561 tctaaaattc ctaacctttt ttcttcacag aaaagttcct ttgtgataac actcctccag
     1621 acatctattg cacctatatt tttaccattc tcatttatat taatgacacc aaaataaacg
     1681 atcttgtcat ttgtttcatt atcgttttca atcatagaaa attacatttt tatttttcct
     1741 tatttagttc ttgcagcctc aaatggttgt tcgagtatta ttgcaagatt atcaatcatg
     1801 gcattttttc tccaaggcac atccttttcc aaacacaatc ttttatatct atttattata
     1861 gcaaat
//
LOCUS       DATCMF010000141         3201 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_216302, whole genome shotgun sequence.
ACCESSION   DATCMF010000141 DATCMF010000000
VERSION     DATCMF010000141.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3201)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3201)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3201
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_216302"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(199..330)
                     /locus_tag="VIL14_01760"
     CDS             complement(199..330)
                     /locus_tag="VIL14_01760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522464.1"
                     /translation="MKTLRLVNLHCNKTDHNNTKVDETIVTVDNDKFPGFGPVSMSN"
     gene            complement(405..1058)
                     /gene="pyrE"
                     /locus_tag="VIL14_01765"
     CDS             complement(405..1058)
                     /gene="pyrE"
                     /locus_tag="VIL14_01765"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: protein motif:HMM:TIGR00336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004588 - orotate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HEY8522465.1"
                     /translation="MNNKKILENLIKQKAILISDYDKPFKLSSGEFSNYYYNSKNCMF
                     DPEGLDIISDLLLKEVRKFKVKSVGGLETGSIPLVTAICLKSSLTESDPLSAFFVRKE
                     PKKHGPQSDGPLAFFEGNPLSPIVIVDDVITTGKSVINKTLDRIKELGMEVSGIICII
                     DREQGAEELFKENNIEFHALFRHSVDFKKYIDNKIDEKRKVYEQKQKKKLEVPSVSH"
     gene            complement(1390..1845)
                     /locus_tag="VIL14_01770"
     CDS             complement(1390..1845)
                     /locus_tag="VIL14_01770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522466.1"
                     /translation="MRNKLTSLSKYQKIQYLTIIPLLSICIPYFSIDVQAQQSSLINN
                     TSNSTANIKGDRINLAIENLLVERSVTNLIEIKGDVKNNSTLDLHEVKVSAEYYDKTG
                     TLLEKVEHFITSPSFILKPNKQVSFDHLEVIGFHKLGDYNIVASGEPLN"
     gene            complement(2710..>3201)
                     /locus_tag="VIL14_01775"
     CDS             complement(2710..>3201)
                     /locus_tag="VIL14_01775"
                     /inference="COORDINATES: protein motif:HMM:NF017936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEY8522467.1"
                     /translation="VNKDSAYWISKLNLQKHPEGGYFVESYKSVELINLPKYHGSRHI
                     STAIYYLLEGYEFSAFHVMKSDELWHFYAGSSLTLYIIEPNGRLSKVILGENIDNGHT
                     FQAAIKSGCWFAAAVDDHNSYSLVGCTVSPGFDYQDWKIGDMKILTKLYPQHKSIIEK
                     YTR"
BASE COUNT         1109 a          461 c          390 g         1241 t
ORIGIN      
        1 gttctgatat ttcctcatca gcgacttaat atattgttta acttataatg gacatcaata
       61 atattttaaa catttcttta tttcaaaaac cttgcctttt ttattatact aacaatttgt
      121 aataaaatta aaagtcataa aatttcttat agcctcaaga ttgacttgaa tattggcatt
      181 aatgttccaa tcacttcttc aattgctcat agatactggt ccaaatcctg gaaacttatc
      241 attatcaaca gtaacaatag tctcatctac ttttgtatta ttatgatcag ttttattaca
      301 gtgaaggttt actaatcgta aagttttcaa caatatagtc aatttaagat tataaaagat
      361 attttatcca aattaaaagg acataaagaa ataataccga gaaattaatg agaaacagat
      421 ggaacttcta attttttctt ttgtttttgt tcatatactt tccttttttc atcaatttta
      481 ttatctatat atttcttaaa atcaacagaa tgtctaaata aagcgtgaaa ttctatattg
      541 ttttctttaa acaattcttc tgcaccttgt tctctgtcaa ttatacaaat tattcctgat
      601 acttccatgc ccaactcttt tattcgatca agcgttttat ttattacact ttttcctgta
      661 gttattacat catccactat tacaattgga gataatggat ttccttcaaa aaaagccaat
      721 gggccatctg attgaggtcc atgttttttt ggttcttttc ttacaaagaa tgccgatagt
      781 ggatcagatt cagttaaaga actcttcaag catattgcag taaccaatgg aattgaacct
      841 gtttccaatc cacctacaga tttaacttta aactttctaa cttcttttaa taataaatcg
      901 ctaataatat ctaatccttc tggatcaaac atacaatttt tagaattata atagtaattg
      961 ctaaattccc cactagaaag tttaaacggt ttatcatagt cagatattag tattgctttt
     1021 tgttttataa gattttctaa tatcttttta ttgttcacta aattttggcc tccctttctt
     1081 taatatatat tatcttataa tattatctat ccttttcttt tgcaaattat agattaaatt
     1141 tagtaaaaac ttttacttta tatttttcaa ttgtagattg cttcttcgta gtaatcatta
     1201 gatttacctt taaagttctt caatatctct tgacaatact cttagttaaa aattaaaatg
     1261 aaagaatagg atttaagagg ataaaattat tatacttttg atatttattt aattttctca
     1321 gttaaccatg aacatgcaat tggtggtata cgataatatc aacgttttat taagtcaata
     1381 aagtgatgtt taattaagag gttcaccact tgcaactata ttataatcac caagtttatg
     1441 aaagccaata acttctaaat gatcaaaaga tacttgttta tttggtttta atatgaaaga
     1501 aggagaagta ataaaatgct caactttctc taataaagtt cctgttttat cataatattc
     1561 agcagaaact tttacttcat gtaaatcaag tgtgctatta ttcttaacat caccttttat
     1621 ttcaattaag ttagttacac ttctttctac gagcaaattt tcaatcgcta aatttattct
     1681 atcacctttt atattagcag tactattaga agtattattt attaaagatg attgttgtgc
     1741 ttgtacatct atactaaaat atggaatgca aattgaaagt aatggtatta tagtaagata
     1801 ttggattttt tgatatttgg ataaactagt tagtttattt ctcatcaaaa gataatatat
     1861 acataaagat atttaaatta ttaatattgt aataccatat tatatttagg tcaggtttgt
     1921 ttgatcaact ccatgattca tgtatacaat tcaaacaata gttttaacat attgatgagt
     1981 attatgataa tatgttatta gaaaatcaat atagataaat ggtagaatcc taccctactc
     2041 tatacaaaga cttttactct aagaaactat gcaatattag gaagatctta ttctaaaaca
     2101 gattaagcca tgaacagtat ttgtagttta tatttacagt cagaagatat agtaagatga
     2161 aaattttaaa tatacaatat gtttaatgct cagttatgaa agttggaatt tattgttata
     2221 gtgttttagt aatgataccc ctaattaaat tagcagagga aaataaaaca gtaactattt
     2281 aaatttgata atggttgtat tattataata cttattttct aagaaattta tatttataaa
     2341 atgagaaaaa gatctatcta gttcatctgt ctgagttaga ctttctcgtg ttcatttaat
     2401 atatctttta tcttcctaag tacctcaatt taataaacta tttgaattat cctaataata
     2461 atactaacga aatgattcta gaagaaaaca tgaactaggg tatagaggct ttagaaacat
     2521 attagaacta ctagcaatta aattcttttt attatctaat ttagtaatat tattcatgct
     2581 aacaatatat agataatcac ctaggtatat tcattaattg gttgttttct ccttcttgaa
     2641 tggacagttt acaaattaaa aacattcaat gcaataataa tataatttgt aaagctaaat
     2701 gatagaagat tatcttgtgt atttttctat aattgattta tgttgtggat ataatttggt
     2761 gagtattttc atatctccta tcttccagtc ttgataatcg aatcctggcg aaacagtgca
     2821 gcctactaag gaataagaat tgtggtcatc gactgctgct gcaaaccaac atcctgactt
     2881 tatagctgct tgaaatgtat gtccattgtc aatattctct cctaatatga ctttacttaa
     2941 tcttccattt ggttctatta tatacaaagt caaactgctg ccagcataaa aatgccacag
     3001 ctcatctgat ttcattacat gaaaagctga gaattcatat ccttcaagta aataatagat
     3061 agcagtagaa atatgcctag acccatgata tttaggcaag tttattaatt ctacagactt
     3121 gtaggattca acgaagtacc caccctcagg atgtttctgt agattcaatt tgctgatcca
     3181 atatgcacta tctttattca c
//
LOCUS       DATCMF010000142         3505 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_349351, whole genome shotgun sequence.
ACCESSION   DATCMF010000142 DATCMF010000000
VERSION     DATCMF010000142.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3505)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3505)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3505
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_349351"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..469)
                     /locus_tag="VIL14_01780"
     CDS             complement(<1..469)
                     /locus_tag="VIL14_01780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522468.1"
                     /translation="MRFSSRIKKLAGDIIYITELVDTENAVSETMRPQSKTFVLLILV
                     FIILSFLVTVKATNNLDNLISNLFFQLGGDPSLDMFMIIVSSTGDLFTMVIVGMILTI
                     IRRTRKIGLIFLISIVVISISIMYIKPLVNRTSPLEQYIPQYHIPDNYMVENDS"
     gene            complement(1258..1332)
                     /locus_tag="VIL14_01785"
     tRNA            complement(1258..1332)
                     /locus_tag="VIL14_01785"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1295..1297),aa:Met,seq:cat)
     gene            complement(1500..3167)
                     /locus_tag="VIL14_01790"
     CDS             complement(1500..3167)
                     /locus_tag="VIL14_01790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase I"
                     /protein_id="HEY8522469.1"
                     /translation="MSNTIEKTFKWKTLEHNGVAFPPSHILKGLSIKINNERLDLNNE
                     QEEIVYAWAKKKDTHYIEDTIFQNNFLSDLKKILPIRFQNVNNIHEIDFSEAFSLVDE
                     ELKLKIIEKEKIQKLSREDKKKLLDKKKQERERLKNFYGKAYVDGMEVEVANWLVEPP
                     GLFMGRGLHPLRGRWKPRVTPQDVILNLGEDAPVPEGAWKNIVHDHSSTWLATWTEKL
                     TDKRKYVWLHDSAFLRQNIDKEKYDKARNLEKYAYKIQKEIINKMINSKDLNQRKIAT
                     VCYLILKLAMRVGDEKDKDEADTVGASTLRVEHIKFPEKDNKKFIELNFLGKDSVPWQ
                     KTLEINSEDTRGLYQNIRLFMKDKGHNSEIFDKINSSKVNAFLRKIDPKNVPGLTAKV
                     FRTYLATKIVKESLKNPPFDVNKESSEPKKIYVAKIANLKAAIACNHKKGIDPKNPAS
                     KKALDKFAESLTKKEEAIEKIRNDILSNKWKTEKQKEKLIHRMEKIQYQLKLQKETRD
                     YNLGTSLRNYIDPRIMKTWLDDVELDWKKVYTSTLQRKFKWIELSKK"
     gene            complement(3273..>3505)
                     /locus_tag="VIL14_01795"
     CDS             complement(3273..>3505)
                     /locus_tag="VIL14_01795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="7,8-didemethyl-8-hydroxy-5-deazariboflavin
                     synthase subunit CofH"
                     /protein_id="HEY8522470.1"
                     /translation="TSAGASFGQLLKPKVIRNIIHNMGKIPAQRKSNYQILKTFSNDD
                     YFDDDLLDISDSQDFGSYKELIKMDRFRFKKH"
BASE COUNT         1063 a          545 c          474 g         1423 t
ORIGIN      
        1 tgctatcgtt ttcaaccata tagttatcag gaatgtgata ttgtggaata tattgttcaa
       61 gaggagatgt ccgatttaca agtggtttaa tatacattat tgatatagat atgactacaa
      121 ttgatattag gaaaatgagt ccgatttttc ttgttcttct tattatagtt aaaatcattc
      181 ctacaatcac catagtaaat aagtcacccg ttgaagaaac aataatcata aacatatcta
      241 aactaggatc tcctcccaat tgaaaaaaaa gattagatat taaattatca aggttatttg
      301 ttgctttaac agtaactaaa aatgacaaaa ttatgaatac taagattaat aatacaaatg
      361 ttttactttg tggtctcatc gtttcactca ctgcattttc ggtatctact aattcagtta
      421 tataaataat atctcctgcc aatttcttta ttctacttga gaatcgcaat gatatctcaa
      481 aatatataat tcgactagat ctaattggac aatagttgtg cttagaattt tagaatccgt
      541 attatattaa aaatttttgt gagctctttg ttcttttcct atagctttcc tttactaatg
      601 gatagtaatt cttttagatc tctttaacag ataaaggtat gaaaatgaat ttactttagt
      661 tcaatattgc cagccaagga aaatatcaat tgaaaggtag gtaaaaattc ggaaaataaa
      721 taccatcata atatggagaa aattatatag aattcaatta gcaaagtgcg tttggtcttt
      781 ttctattata tttttgctcc atacaaacct aaagcattta tcattataat ctgatgtttg
      841 actactccat aatgaaaatt ggttctcttc ttttggaagg taaataaatg ttagaaacct
      901 actctaaaaa gacgagtatt agcaataaaa aaggaaagga aattattcca aatgtcacgt
      961 ttttcgtatt agggttggaa taacacaatt tgtattctaa ggtttatttc tagattacat
     1021 aaatgaatcc acatttagag tcagtttgat tatttctatg aagatctgtt ttatatcttt
     1081 tgaatcttat aactaacctt tttgatattg tagcgatttt ctcatttgga aagataattt
     1141 aagtatttgt gatagttctt catatactat attttttgct tttagtttta aattttcagc
     1201 ttttttatcc ttttttcgta ttttcttaag gtaaagtgaa attgagagaa tacttaatgc
     1261 cggaggcggg attcgagccc gcgacctttc gattatgagt cgaacgctct aaccaagctg
     1321 agccactccg gcaagctcag cagcgtttca ttcctgttat ttcaaatgtg atatatattc
     1381 tattaatatt caaattgctc ctaaatcttt tgatattatc agagataata tattataaca
     1441 actttaggat ttttattata aaggcagtta agagaatttg aatttttgtc agaaagtgat
     1501 tatttctttg ataattcaat ccatttaaat tttctttgta acgttgaagt atataccttt
     1561 ttccaatcta attctacatc atctaaccag gttttcataa ttcttggatc aatataattt
     1621 cttaaagacg tacccaaatt ataatctcgg gtttcttttt gtaattttaa ttggtactga
     1681 atcttctcca ttctatgtat tagtttttct ttctgttttt ctgttttcca cttattagac
     1741 aatatatcgt ttcttatttt ttcaatggcc tcttcctttt tggttagtga ttctgcaaat
     1801 ttgtctaatg cctttttact ggcagggttt ttggggtcaa ttcctttttt atggttacaa
     1861 gcaatcgctg cttttaaatt agcaattttg gctacataaa tttttttagg ttctgaagat
     1921 tctttattaa catcaaatgg tggatttttt aatgattctt ttactatttt cgttgcaaga
     1981 tatgtcctaa atacctttgc agttaggcct gggacatttt ttggatctat ttttcttaaa
     2041 aatgcattca cctttgagga attgatttta tcaaaaattt cactattgtg tcctttgtct
     2101 ttcataaata atcggatatt ctgatataaa cctcttgtgt cttcagaatt tatttctaag
     2161 gttttttgcc atggaacact atcttttcca agaaaattaa gttcaatgaa tttcttatta
     2221 tctttttcag gaaattttat atgttctact ctcaaggtag aggcaccaac tgtatctgcc
     2281 tcatctttat ctttttcatc ccctactctc attgctaatt tgagtattaa ataacaaaca
     2341 gttgctattt tgcgctgatt taaatcctta gagttaatca ttttgtttat aatttctttt
     2401 tgaattttat aggcatattt ttcgagattt ctcgctttgt cgtatttttc tttatcaata
     2461 ttttgtctga gaaatgctga atcatgtaac caaacatatt ttcttttatc agttaatttt
     2521 tcagtccatg tagctagcca agttgaggaa tgatcatgaa caatattttt ccatgcccct
     2581 tcaggaacag gtgcatcttc tcccaaattc aatataacat cttgaggtgt tactcttggt
     2641 ttccatcttc ctctaagtgg atgtaatcct ctacccatga ataaacctgg gggctcaact
     2701 aaccaattgg caacttcaac ctccatccca tcaacatacg cctttccata aaaattcttt
     2761 aatctttctc tttcttgttt ttttttatct aataacttct ttttatcttc tctacttaac
     2821 ttttgtattt tctctttttc tattattttg agtttaagtt cctcatccac taggctaaaa
     2881 gcttctgaaa aatcaatttc atgtatatta tttacattct ggaacctaat tggtaatatt
     2941 ttttttaaat cacttaagaa attattttgg aaaatagtat cttcaatata atgcgtatct
     3001 ttcttttttg cccatgcata tactatttct tcctgttcat tattgagatc taatctttcg
     3061 ttatttatct taatacttaa tccttttaaa atatgactag gaggaaaagc tactccattg
     3121 tgctccaatg ttttccattt aaaagtcttt tcaatggtat ttgacattaa tagatacaga
     3181 tttaatggtc atgtttaact attgataaat cttaccaata aaacaaatct aaaaatttgt
     3241 ttaaataata tttacaagaa aaggaatctc gatcagtgtt ttttgaacct aaagcgatcc
     3301 atttttatta attctttata tgatccaaaa tcctgtgaat cagaaatgtc tagtaaatca
     3361 tcgtcaaagt aatcatcatt tgaaaatgtt ttgagaattt gatagtttga ctttctttga
     3421 gcgggtattt tgcccatatt atgtataata tttctaataa ctttaggttt taatagctgt
     3481 ccaaaggagg cgccagcaga tgttg
//
LOCUS       DATCMF010000143         1760 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_349366, whole genome shotgun sequence.
ACCESSION   DATCMF010000143 DATCMF010000000
VERSION     DATCMF010000143.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1760)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1760)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1760
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_349366"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(381..1196)
                     /locus_tag="VIL14_01800"
     CDS             complement(381..1196)
                     /locus_tag="VIL14_01800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522471.1"
                     /translation="MLGCNIEPSSLMVGDNMAVVLNTTIPSSSLKKKHQACNYHKVRE
                     SIAGGFIRFAHIKSEDNLADILTKPLPRVLFERLTSKCLFRKASTITAQVNMIVQARM
                     GRPISPPPAKNQIRSILIDSGASGSLINPVDFYIESYENGQVGTVQGFLHEIRNLRIG
                     NGITAVELKDKTILLRVNDALIVESTSIISVNQLRHSGIQVDDIPRKYRGRQEMYIDD
                     MIIPLVYIKGLIWLPTRFPTRKELNECKIYDITTKKEWDVMEECDSYDEYYAY"
     gene            complement(1200..>1760)
                     /locus_tag="VIL14_01805"
     CDS             complement(1200..>1760)
                     /locus_tag="VIL14_01805"
                     /EC_number="2.7.7.49"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="Ty1/Copia family ribonuclease HI"
                     /protein_id="HEY8522472.1"
                     /translation="DYHAEMDESPLIPPEKISIYQSLLGSANWVITLGRFDIAYAINT
                     LSRYSVAPREGHLLAMQRVFGYLRHLPKGKILIDVKQPTIRDKIDTSKPHDWIEFYPD
                     AVENLPTNRPVPRGGMCTLTCYVDADHARDKVTRRSVTGILILLNNTPISWYSKRQKT
                     VETSTYGSELVAARIAVEKLIAMRYF"
BASE COUNT          491 a          315 c          253 g          701 t
ORIGIN      
        1 ctcctaaact gtgattaaat tctgtggcca tggttgagtt ttacttcttt ggtctctgaa
       61 ttattctgtc tgctcttaca tcagtaccta aattagtctt ttttagtgat tcatatctta
      121 ctccctcata gtaacttaat atatgtaatt atcatataaa taatgttata tagatatttg
      181 tagattaggt ttgggtaact aaattcccat atagaatatc aaattacttc tgttactccc
      241 ctttagccaa ccctaatcta agttcttatg taattttatg taaatgtgta tacttgggtg
      301 aaaaaacctt ttatttagga aaaacccatt actaacatat aaatctgatt tgtgtttcat
      361 acatataatg tttctttcat ttaatatgca tagtattcat cataactatc acattcttcc
      421 ataacatccc attctttctt agttgttata tcataaattt tgcattcatt caattccttt
      481 cttgttggaa atctagttgg taaccaaatt aatcctttga tgtatactag tggaatgatc
      541 atgtcatcta tgtacatttc ttgccttcct ctgtatttcc ttggtatatc atccacttgt
      601 attcctgaat gtctaagttg atttactgag atgatacttg tgctctccac aatgagagca
      661 tcattaactc ttaacagtat ggttttatct tttaattcca ctgctgtgat tccatttcct
      721 atcctcaaat ttcttatttc atgtaaaaaa ccttgtactg ttcctacttg tccattttca
      781 tatgattcaa tatagaaatc tactggatta ataagactac cactggcacc actgtctatc
      841 aaaatacttc tgatttgatt cttagctgga ggtggtgata ttggtcttcc catacgtgct
      901 tgtactatca tattaacttg tgcagtgatt gtggatgctt ttctaaataa acatttgctt
      961 gttagtcttt caaataatac tcttggtagt ggcttagtta gtatatctgc taagttatct
     1021 tcacttttaa tgtgtgcaaa tctgatgaat ccacctgcta tactttctct aactttatga
     1081 tagttgcatg cttgatgttt tttctttaat gatgaggatg gaattgtggt atttaagacc
     1141 actgccatat tatctccaac cattaatgaa cttggttcaa tgttacatcc taacatggtt
     1201 taaaaatatc tcatagctat tagcttttct actgcaattc ttgctgctac caattctgag
     1261 ccataagtag atgtttctac tgttttctga cgtttagaat accatgatat aggggtattg
     1321 ttaagtagaa ttaaaattcc tgtgactgat cttctagtta ctttgtctct agcatgatct
     1381 gcatctacat aacatgttaa agtacacatt cctccccttg gtactggtct attagtaggt
     1441 aagttttcta ctgcatctgg ataaaattct atccaatcat gtggcttgct agtatcaatc
     1501 ttatctctaa ttgtaggctg tttaacatct attaatattt ttcctttagg taaatgtcta
     1561 agatatccaa atactctttg cattgctaat agatgtcctt ctcttggtgc aactgaatac
     1621 ctagataatg tattgatggc ataagcaatg tcaaatcttc ccaatgtaat aacccaatta
     1681 gcacttccaa gtaatgattg atatattgaa atcttttcag gtggtatgag tggtgattca
     1741 tccatttcag catgataatc
//
LOCUS       DATCMF010000144         1559 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_547585, whole genome shotgun sequence.
ACCESSION   DATCMF010000144 DATCMF010000000
VERSION     DATCMF010000144.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1559)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1559)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1559
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_547585"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            107..1057
                     /gene="tfb"
                     /locus_tag="VIL14_01810"
     CDS             107..1057
                     /gene="tfb"
                     /locus_tag="VIL14_01810"
                     /inference="COORDINATES: protein motif:HMM:NF012600.4"
                     /note="stabilizes TBP binding to an archaeal box-A
                     promoter; responsible for recruiting RNA polymerase II to
                     the pre-initiation complex; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription initiation factor IIB"
                     /protein_id="HEY8522473.1"
                     /translation="MIVHYYNKYKKNMQSIIQCEICDPSESRMITDVESGEIICNRCG
                     IVVVKNLEDTTKIWHKVEDDKIDTRNGNPSSLTLYDQGLTTRIGNTNRDASGNVINSM
                     MVTRLNKMRFQDKRSQINTSARNLGRAFRQLDSLKDKMNLPNAVIEKTAYIYRKVQEA
                     GLVRGRKVNTVLGASLYIACREFEIPRTLREISSINNEKYRETSRVYRQIVLHFGKQI
                     PQIDVFRYVEKVGKKAKLEEKNIRDALRLMKKVQDAGLSAGKEPMGIVGAVIYLSLPK
                     SDENIRKRTITQAVIADAAGVSEVTIRNVYKEIEKKLSLG"
BASE COUNT          621 a          193 c          272 g          473 t
ORIGIN      
        1 ttagcagtat aagaacgcat gttaattttt agttaatcag gaggttaaat aagaactcag
       61 atttatttat gtaaatctta taagaagagg tataagattt atatatttga ttgtccatta
      121 ttataataaa tacaaaaaaa atatgcaatc cataattcaa tgtgaaatat gtgatcctag
      181 tgaatccaga atgattactg atgttgaatc gggagaaata atctgtaata gatgtggtat
      241 agttgtagtt aaaaatttgg aagatactac caagatatgg cataaagttg aagatgataa
      301 aattgataca agaaatggta atccttcttc tttaacactt tacgatcaag gccttactac
      361 aagaataggc aatacaaaca gagatgccag tggaaatgtc atcaattcta tgatggtgac
      421 acgtctaaac aaaatgagat ttcaagataa aagatctcaa attaatactt ctgctcgaaa
      481 tttaggtagg gcctttagac aattagattc attaaaagat aaaatgaatc taccaaatgc
      541 tgttatagaa aaaacagcct acatttatag aaaagtacag gaagccggat tagtgagagg
      601 tagaaaagta aatacagtat taggcgcgtc attatatatt gcttgtagag aatttgaaat
      661 accaaggaca ttaagagaaa tttcttcaat taacaatgaa aaatatcgag agacgtccag
      721 agtttatcgt caaatagtct tgcattttgg taaacaaatc ccacaaatag acgtgtttcg
      781 atacgtagaa aaagtaggaa aaaaagccaa acttgaagaa aaaaatatac gtgatgcatt
      841 aagactgatg aaaaaagttc aagatgcagg attgagtgca ggaaaagaac ctatggggat
      901 agttggagca gttatatatc tatcgcttcc taaaagtgac gagaatatca gaaaaagaac
      961 tatcacacaa gcagtaattg cagatgcagc aggagtatct gaggttacaa ttagaaatgt
     1021 atacaaagaa attgaaaaga agctttcgct aggataaata aattaccaaa tttttttatg
     1081 agtcccttct gaagtacagt ttgttatcta aaacggtaac atataaataa tttaattgtt
     1141 ctattctata aacttttatt gtaacttatt ataattgcta tctggaaagt caagaaatta
     1201 taaacactaa cacaaatagt ggcgagatga tccaaggaat ttttattgtt atgtgttgta
     1261 aatataatga ttcaaaatct atctcaactt cagaaggcat tttgatctaa gtttggcata
     1321 aatttgttaa gttaccatta ttccttaatg aaattactgc ttctagttta gtttattgac
     1381 tttgttgaat ggattctgtc aattaatcaa ggttataatt aaaggaagta aaatctaaac
     1441 tcatcctata tatcagtagg aggttattta caaattagaa agataaccca aataaaggaa
     1501 tcaaaatatg gaaactgtta aagtgataac aatgcatcaa aggaactaag cttatgtaa
//
LOCUS       DATCMF010000145         2087 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_216542, whole genome shotgun sequence.
ACCESSION   DATCMF010000145 DATCMF010000000
VERSION     DATCMF010000145.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2087)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2087)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2087
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_216542"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            895..1311
                     /locus_tag="VIL14_01815"
     CDS             895..1311
                     /locus_tag="VIL14_01815"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY8522474.1"
                     /translation="MELSNHTDNYILLVDDEKDVLDLFSEYLTSNGFNTISFDNPVKA
                     LEYFYKNTNNCSVVITDYRMPQMSGLDFINKIRKKDTDCKIKTIMVSAYIKDNIPYDK
                     SYTMTIDRILEKPVYLDRLKTEIQQLLTIDIKKKIS"
     gene            1450..1833
                     /locus_tag="VIL14_01820"
     CDS             1450..1833
                     /locus_tag="VIL14_01820"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY8522475.1"
                     /translation="MAKKRVLIIDDDEDINNLFTIYLENRGYQIDAYTDPVNALYYFK
                     KGFYDLVLLDLKMPQLDGITMYQQLKKIDNNASICLITADIANLEQLKEKIPNIEKYV
                     IYKPILLKNLKEKIDSLLLEKSMSC"
     gene            complement(1864..>2087)
                     /locus_tag="VIL14_01825"
     CDS             complement(1864..>2087)
                     /locus_tag="VIL14_01825"
                     /inference="COORDINATES: protein motif:HMM:NF028479.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="6-bladed beta-propeller"
                     /protein_id="HEY8522476.1"
                     /translation="LAIDSSDNIFVVDNGNNRVQVFNSDGGYITQFGNQGPTADILQS
                     PIGIAIDSNDNVFIADGSDSDIHVFSQVK"
BASE COUNT          824 a          267 c          256 g          740 t
ORIGIN      
        1 tactacagag tcagaagtaa taagtttgga ataaagcttc atatatcaaa ataaataaca
       61 aagagaattg tcaaccttta aaaaaaaatt aggatatgta cttggaattt tttttatctt
      121 aataagttta tacggcctag caattattct atactctcca gcttctaccg aagtttttga
      181 aatgattgta ttgaccttat ccattttagc aataggaatc atttttattt atttagctca
      241 cagaatacga taattctatc tgataataat aataataaat tttttaactt atcatttatc
      301 taggtattac tttcttcatt ttcttcaaat tattatttta agaagtactt tgtttggctt
      361 tgttaaacgc tataatagta tttattataa tttcatcatt tttattcatt ttaaaaaatt
      421 ttataataaa agccaaatac aagtattaga acactttata caagctggaa tttgactcca
      481 aatgttgagc ctactaataa gcttattacc atataaaaaa atttaatcta aaataaaata
      541 ttatttgtta tcaaggcgta aaatttatca taatccagaa aagtattaac attttgaatt
      601 acatacagat atgtggaatt gatgacaata taaaaggaat atctataata ttactattat
      661 agttgttaaa acaatttcac ttttgatatc cctcagttca cttttgcaga aaccaaaaat
      721 atttgagtcg ttttatgaat aaaattagat ttaattttct atataagtat attgtggaac
      781 atgtattttt aacattttac attattatta ctattgttat agtgcctaat tattctaaaa
      841 taataataac aaatagtatt gtttattaat ttcaatagcg atagtaaaat agggatggaa
      901 ttatctaacc atacagataa ttatatctta ttggtagatg atgaaaaaga cgttcttgac
      961 ttatttagcg aatacttaac atcaaatggt tttaacacaa tttcttttga caatccagtt
     1021 aaagcattag aatattttta taaaaataca aacaattgtt ctgtggttat tacagattat
     1081 agaatgccgc aaatgtcagg cttagatttt ataaataaaa taagaaaaaa agatactgat
     1141 tgcaaaataa aaaccataat ggttagtgct tacataaaag acaatattcc atatgataaa
     1201 tcatatacta tgacaattga tagaatatta gaaaaacctg tatatcttga tagactgaaa
     1261 acagaaatac agcaattgct aactatcgat ataaagaaaa aaatatcgta gtaaaacaat
     1321 tagatttaaa ttttctttat tttgatttct tatgtcaata tccctttact gaaaggtcaa
     1381 atattagcat ttatccccca atcttaataa acaatagtgt ctattggact aaagttagga
     1441 aaaatgtcca tggcaaaaaa aagagtattg ataatagatg atgatgagga tatcaataat
     1501 ctttttacaa tatatttaga gaatcgggga taccaaatag acgcttatac cgacccagta
     1561 aatgctttat attatttcaa aaaaggattt tatgatttgg ttttacttga cttaaaaatg
     1621 ccacagctag atggcattac tatgtatcaa caattaaaga aaatagataa taatgcaagt
     1681 atatgtttaa tcacagctga tattgcaaat ttggaacaat taaaggagaa gattcccaat
     1741 attgaaaaat atgtaatata caaacccatc ctattaaaaa acttaaagga aaaaattgat
     1801 tcattacttt tggaaaaaag tatgtcctgt taaaagttct agtaaacata aaataaaaaa
     1861 ttattatttt acttgactaa atacatgtat atcgctatca ctcccatctg ctatgaatac
     1921 attatcatta gaatctattg caataccaat cggactttga agaatgtcag cagttggacc
     1981 ttgattgcca aattgagtaa tatatccacc atcactattg aatacttgta cacgattgtt
     2041 accattatca actacgaaaa tattatcaga tgaatcaatt gctaatt
//
LOCUS       DATCMF010000146         1992 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_349549, whole genome shotgun sequence.
ACCESSION   DATCMF010000146 DATCMF010000000
VERSION     DATCMF010000146.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1992)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1992)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1992
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_349549"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..405)
                     /locus_tag="VIL14_01830"
     CDS             complement(<1..405)
                     /locus_tag="VIL14_01830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522477.1"
                     /translation="MDPITIFDKIKDAQCNNKSITVLHDFFIDRIIKIENLEDFFLRI
                     KEKTKYGGGSIRGISTTQLEGGNAVNIAYCLGKLGFDVDLFTITDDSSDLNLKYFFSD
                     LPKVKLHLSYGKPGYTTSLEIHNSLDLNDSNIM"
     gene            complement(495..638)
                     /locus_tag="VIL14_01835"
     CDS             complement(495..638)
                     /locus_tag="VIL14_01835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522478.1"
                     /translation="MRRRTAEMIMIGSGIGIAASAGAMNITYMLYGGLAILGLGVISI
                     FWR"
     gene            complement(736..1329)
                     /gene="dps"
                     /locus_tag="VIL14_01840"
     CDS             complement(736..1329)
                     /gene="dps"
                     /locus_tag="VIL14_01840"
                     /EC_number="1.16.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004322 - ferroxidase activity [Evidence
                     IEA];
                     GO_function: GO:0008199 - ferric iron binding [Evidence
                     IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0006880 - intracellular sequestering of
                     iron ion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA protection during starvation protein"
                     /protein_id="HEY8522479.1"
                     /translation="MSNDQDRSVPKIVALEVLEKNGVNVQRLIELIRKGVGAEFTTYY
                     YYTILRMHCTGLEGEGIKEIVEDARIEDRNHFEAMTPRLYELGGSLPRDIREFADQAG
                     CPDAYLPDNWQDINSILKVLLEAEQCAIRSWGEVCDMTAGKDPRTYDIAQKIMQEEVE
                     HEAWFIELLSKRPSGHFRRKFVGQSPHVSEQGGLIHL"
     gene            1450..1590
                     /locus_tag="VIL14_01845"
     CDS             1450..1590
                     /locus_tag="VIL14_01845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522480.1"
                     /translation="MATEQIVDPFTVMIAISGFFSATILLSSLLTIRKKKITTDKIEN
                     NI"
     gene            1609..>1992
                     /locus_tag="VIL14_01850"
     CDS             1609..>1992
                     /locus_tag="VIL14_01850"
                     /inference="COORDINATES: protein motif:HMM:NF013528.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DHH family phosphoesterase"
                     /protein_id="HEY8522481.1"
                     /translation="MTITICISHKEDVDGLSSAILINSAFKKKVSVLLVDYANLINKL
                     EKLLKSLLPVTKGYNRIFICDLGLNKKNQYRFISILYKMVALGYKVTYIDHHDLEDEA
                     KKEIKKIGVNLIHSTQECTSVHVYNK"
BASE COUNT          669 a          348 c          264 g          711 t
ORIGIN      
        1 cattatatta gaatcattta agtctaggga gttatggatt tctaatgatg ttgtgtagcc
       61 tggttttcca taggataagt gcaattttac tttaggtaaa tcactaaaaa aatattttaa
      121 attcaggtca cttgaatcat cagttatcgt gaatagatct acatcaaatc caagctttcc
      181 aagacaataa gcaatattta ctgcatttcc tccttctaat tgtgtagtag aaattcctct
      241 gatgcttccg cctccatact ttgttttttc ttttatgcgt aaaaaaaaat cctctagatt
      301 ttcaattttg attattctgt caataaaaaa atcatgcaat actgtaatcg atttgttatt
      361 gcattgtgca tctttgattt tatcaaaaat tgtaatcgga tccaaaattc ctatgtaaac
      421 acctatttga tttctatttc tctataacac atattgttgt tattgttgtt atcgttgttt
      481 ctttataaaa aaagttatct ccaaaatatt gaaattacac ctaaacccaa gattgctaat
      541 cctccataaa gcatataagt aatattcata gcccctgcac tggcggctat tcctatacct
      601 gaacctatca taatcatctc tgctgttctt cttctcattg tagcaataat tataaaaaaa
      661 tggcctaata agtattgtag tccttcctta aaggttatat gctataaaac ataaatattc
      721 aaaagattaa acaaattata agtggattaa accaccttgt tcactaacat ggggagactg
      781 tccaacaaat tttcttcgaa agtgaccaga aggtctcttt gacaaaagct caataaacca
      841 tgcctcgtgt tcaacttctt cttgcattat tttttgtgct atatcgtatg ttcgtgggtc
      901 tttacctgca gtcatatcgc atacttctcc ccatgacctt atggcacatt gttctgcctc
      961 tagtaacacc tttaatattg aattaatgtc ttgccagtta tctggcaaat aggcatctgg
     1021 gcatcccgct tggtcagcaa attctctaat atctcgtggg agacttccac ctaattcata
     1081 taatctagga gtcattgctt caaagtgatt cctatcttca attcttgcat cctctactat
     1141 ttccttaatc ccttcgccct ctaaacctgt acaatgcatc cttaagattg tataataata
     1201 atatgttgta aactcagcgc ctacaccttt tctgattaat tctattaatc tttgtacatt
     1261 tacgccattc ttttccaaaa cttccaatgc cacaattttt ggaacagatc tgtcttgatc
     1321 atttgacata gtattcgaat tgaatagtaa tatttaaagg ttttaatatc ccgattcaag
     1381 aaaggaacct aattaactaa aataatgcca tcttaatagt atatatataa tggtttttgg
     1441 atattgtata tggcaactga acaaattgtg gatcctttta cggtcatgat cgctatttca
     1501 ggatttttct ctgcaacaat cttattatca tcacttttaa caattagaaa gaaaaaaatc
     1561 acaactgata aaattgaaaa taatatttaa gatttaatta taattaaaat gactattaca
     1621 atatgtattt ctcataaaga agatgttgat ggtctatctt cagctatact gataaattct
     1681 gctttcaaaa aaaaagtgtc tgtactatta gtagattatg caaaccttat aaataagctt
     1741 gaaaaactac taaaaagtct cttacccgta acaaaaggat ataatagaat atttatttgt
     1801 gatcttggat taaacaaaaa aaatcagtat agatttattt caatattata taaaatggtt
     1861 gctttgggat ataaagtaac ttatattgat catcatgacc ttgaagacga agcaaagaaa
     1921 gaaataaaaa aaataggggt aaacctaata cactctactc aagaatgtac tagtgtccat
     1981 gtttataata aa
//
LOCUS       DATCMF010000147         1598 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_349762, whole genome shotgun sequence.
ACCESSION   DATCMF010000147 DATCMF010000000
VERSION     DATCMF010000147.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1598)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1598)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1598
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_349762"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..624)
                     /gene="ilvC"
                     /locus_tag="VIL14_01855"
     CDS             complement(<1..624)
                     /gene="ilvC"
                     /locus_tag="VIL14_01855"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004455 - ketol-acid reductoisomerase
                     activity [Evidence IEA];
                     GO_process: GO:0009097 - isoleucine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009099 - valine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HEY8522482.1"
                     /translation="MVKKWGDNDVTLDSIKNQIIAVIGYGIQGKAQANNLKDSGLNVV
                     VGLRKEGNSWKIAEADGQNVMEVRDAVRIADIIHILIPDMEQADVYKNEISPYVTENK
                     ALCFSHGASIHWKWIEPPTNVDVIMVAPKGPGQRVRELFQEGFGTPSLVAVYRDHTGT
                     ALNRVLALAKGIGSTRPGVIETNFKEEVETDWFGEQADLCGGAHTLIM"
     gene            complement(1029..1568)
                     /locus_tag="VIL14_01860"
     CDS             complement(1029..1568)
                     /locus_tag="VIL14_01860"
                     /EC_number="2.7.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamide-nucleotide adenylyltransferase"
                     /protein_id="HEY8522483.1"
                     /translation="MIKYKRGLVIGRFQPFHNGHLELIKQIMNECEELVVVIGSAQFN
                     YLAKDPFTAGERIEMIHSSLSFQTCDLSRIFIIPLANFENNACWFEYLKSMVPKFDIL
                     YSGNEYVRYLSTKEIIVKKPIFINKFRFNGENIRKLIINHEKWENLVPNPVKAIIMNI
                     NGVERIRVLAKSDTHPQQW"
BASE COUNT          504 a          289 c          226 g          579 t
ORIGIN      
        1 cattataagc gtatgagccc ctccacaaag gtcagcctgc tcgccgaacc aatctgtctc
       61 aacttcttcc ttaaaattcg tctctattac acctggccga gtactaccta ttccttttgc
      121 caaagcaaga actctattta aagcagtacc tgtatgatct cggtaaactg caactagaga
      181 tggtgtacca aatccttctt gaaatagttc tctgactctt tgtcctgggc ctttgggagc
      241 aaccataata acatcaacgt ttgttggagg ttctatccat ttccagtgaa tggaagcacc
      301 atgtgaaaaa caaagtgctt tattttctgt tacataggga ctgatttcat ttttatatac
      361 atctgcttgt tccatatccg gaattaatat atgaattata tctgcaattc ttacagcatc
      421 tcttacttcc ataacatttt gtccatcagc ttctgcaatt ttccacgaat ttccttcctt
      481 acgtaatcct accacaacat taagtccgga atctttaagg ttattagctt gagcttttcc
      541 ctgtattcca tacccaatga ctgcaattat ttgattcttt atagaatcaa gcgttacatc
      601 attatcgccc cactttttaa ccataaaata atataaaatg aggttttata aataataact
      661 gctgctaaat tttagttggt taatccgcac tctttgccgg gtaggttaca aattgagaaa
      721 tatgtgattg taaaaaacca gaatttcaaa aatagaggat atagtaaaat acatagtaaa
      781 gattctggta tctaattata aatatcaaat atagacataa aatatagttt ctttatggtt
      841 taaaaataag atttctcttc tagatttagt acgagaatga taatttaaca ctctatcaat
      901 attattttaa agcatttcac acattgaatt ttaataaatg ctagaggtgt gtttttctca
      961 ataactttga acttcctaga accacatctg ctacaaagag ggcactttct attattttgg
     1021 atagattttc accattgttg tggatgagtg tctgactttg ctaagactct tattcgttca
     1081 acgccgttta tattcattat tatagctttg acgggatttg gaactaaatt ttcccatttt
     1141 tcatggttta ttattaactt gcgaatattt tctccattga atcgaaattt atttataaag
     1201 ataggttttt tgactattat ttctttagta gataaataac ggacatattc atttccggaa
     1261 tataaaatgt caaattttgg aaccatggat tttaaatatt caaaccaaca cgcattattc
     1321 tcaaaatttg ctaaagggat gataaaaatt ctactaaggt cacaggtttg aaatgaaagt
     1381 gaagaatgaa tcatttctat ccgttcacct gcagtaaatg gatcttttgc taagtaatta
     1441 aattgtgcgc ttcctataac tactaccaac tcttcacatt cattcataat ctgtttaatt
     1501 agttctaaat ggccattatg aaaaggttga aatctcccaa taactaatcc tcttttatat
     1561 ttaatcatca ttttttttga tcacaagatt cattgatg
//
LOCUS       DATCMF010000148         2329 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_349807, whole genome shotgun sequence.
ACCESSION   DATCMF010000148 DATCMF010000000
VERSION     DATCMF010000148.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2329)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2329)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2329
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_349807"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            60..302
                     /locus_tag="VIL14_01865"
     CDS             60..302
                     /locus_tag="VIL14_01865"
                     /inference="COORDINATES: protein motif:HMM:NF024804.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HEY8522484.1"
                     /translation="MIGETQLRARRTRIKILRAIAERNGSAGFSDIQNATALSTGSIY
                     YHIERMRDYIRKNAKNYSITKKGIQLLVEIDLKNKQ"
     gene            391..669
                     /locus_tag="VIL14_01870"
     CDS             391..669
                     /locus_tag="VIL14_01870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEY8522485.1"
                     /translation="MKYRSRTDIVALILEATKEGAAKTKIMYKAFLSYSQLKDYLSIL
                     LERELIEYSDKDQIFRITDKGRRYLYLYSKVMELITPSGDQDLENQIK"
     gene            complement(855..1499)
                     /locus_tag="VIL14_01875"
     CDS             complement(855..1499)
                     /locus_tag="VIL14_01875"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: protein motif:HMM:NF012630.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031012 - extracellular matrix [Evidence
                     IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="matrixin family metalloprotease"
                     /protein_id="HEY8522486.1"
                     /translation="MKNFIKYLSFLLGFFLIISLIQFNFNYIYSTNNQQTDYLKKQIE
                     ICCTWGNKLADGILTYEINNAKPETKELVISAISYWKENIPGIEFKETDSKQQVDIKI
                     SFRNDNGKVAGQTMTNFDSDGFIFNVKILLAEKAFGKQLNKNVIEYIAKHEFGHALGL
                     GHANFNESLMSSLVYNSFNKISDCERKSVQEANKWKLIDNDSSPKISKIKKYFC"
     gene            1628..1966
                     /locus_tag="VIL14_01880"
     CDS             1628..1966
                     /locus_tag="VIL14_01880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522487.1"
                     /translation="MSSAEVYSTTYLKYKNLEDMLKVILFASQSPIGMVPMLYHINFK
                     DKEVLFIETGAVNTVIHYMVLTEKPAKKFIELKQLTGKFEFVNGIGNDTQAIYIPILE
                     LEQSSFNFPV"
BASE COUNT          899 a          266 c          283 g          881 t
ORIGIN      
        1 tattataaat tttatttaat ttagtaaaaa ataaataatt tatttgagca atatcaatat
       61 tgataggaga aactcaactc cgcgctcgaa gaaccagaat taaaatatta cgtgctatag
      121 ctgaaagaaa tggatctgct ggcttttctg acatacaaaa cgctacagct ttatctacag
      181 gatccatata ttatcatatt gaaagaatga gagactatat aagaaaaaat gcaaaaaatt
      241 attctatcac aaaaaaaggt atccaattat tagtagaaat tgatttaaaa aataagcaat
      301 aatagttaat tttcaattcc atttttgtag taataatttt aatattttac gatcaatatt
      361 tatgaaacat tccatttata aaacttgtta atgaaatatc gaagcaggac agatatagta
      421 gcattaatac tagaagctac taaagaggga gcggctaaaa caaaaataat gtataaggct
      481 tttctttctt atagtcaatt aaaagattat ctttcaatat tattagaacg tgaattaata
      541 gaatattccg ataaagatca aatttttagg ataacggaca aaggaagaag atatttgtat
      601 ctttattcta aagttatgga actaattact ccgagtggtg atcaagattt agaaaatcaa
      661 attaaataaa ataaaataaa ctttataata taagaaaaaa acgttatgtc tattattctc
      721 atatttgttt cattgtataa tttgtagaat taggtcatat aatagtaaat tactataaat
      781 aatatattgc aataatttag aaataaaaat agaattaata taattaaaat ttgaggtaaa
      841 caataaacat agaattagca aaaatatttt ttaattttgc ttattttcgg agatgagtca
      901 ttgtctatta atttccattt gtttgcttcc tgaacagatt ttctttcaca gtctgaaatt
      961 ttgttaaatg aattataaac caacgatgac ataagagatt cattaaaatt tgcatgtcct
     1021 agaccgagag catgaccaaa ctcatgtttt gctatatatt caatcacatt tttgttcaat
     1081 tgttttccaa aagccttttc agcaagcaat atcttgacgt taaaaataaa tccatctgaa
     1141 tcaaaattag tcatggtctg tcctgcaact tttccattat cattcctaaa agaaatcttg
     1201 atatctactt gttgtttact atctgtctct ttaaattcaa ttcctggtat attttctttc
     1261 caataactta tcgcagatat tactaattcc tttgtttcag gttttgcatt atttatttca
     1321 tatgtaagta ttccatctgc aagtttattt ccccatgtac agcaaatttc tatttgtttt
     1381 tttagataat cagtttgttg gttattagta gaataaatat aattaaaatt aaattgaatt
     1441 aaactaataa ttaagaaaaa tccaagtaga aacgataaat attttataaa attcttcaat
     1501 aaatgaacta taaaattaac tcatatattt tttctttgtt actaattatc tctatttgta
     1561 tatttatttt aataaataaa gacggaagag tattataggt tactattata atagggtatg
     1621 atatttgatg tcatcagctg aagtttattc aactacatat ctaaaatata aaaatttgga
     1681 agacatgctt aaggtgattt tatttgcttc tcaatcacca ataggaatgg tgccaatgct
     1741 ttatcacatc aattttaagg ataaagaagt attatttata gaaacaggtg ccgtcaatac
     1801 agttattcat tatatggttt tgactgaaaa gcctgcaaaa aaatttattg aattaaaaca
     1861 gctgactgga aaattcgagt ttgtaaatgg aataggtaat gatacacagg ctatttatat
     1921 tccaatttta gaattggaac aatcatcatt taattttcca gtttaattaa taataataat
     1981 aataataata ataataatta tttaatttat tttactttat ttggttatta tctaattagc
     2041 agttgtgatt tcctatttta aagtttcaaa ttcttactta atgtttaaaa gcaaatgttg
     2101 tattataata atatggaatt aaaacttttg tacagtattt atgttggaat aaaagtatca
     2161 atctacaaat taataaaagg gcgagggaaa aaaaagtttt tcaaaagaat tgaataacaa
     2221 ttataaattt ttatattatt ataattattt tttcatattt catatttaat taattaattc
     2281 taactttagt atataatatc atattttgta ctatatcatt ttataacat
//
LOCUS       DATCMF010000149         3499 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_283178, whole genome shotgun sequence.
ACCESSION   DATCMF010000149 DATCMF010000000
VERSION     DATCMF010000149.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3499)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3499)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3499
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_283178"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            185..724
                     /locus_tag="VIL14_01885"
     CDS             185..724
                     /locus_tag="VIL14_01885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522488.1"
                     /translation="MNTMFYKKGLAFFAGTAFLVAFLFAYNYVPVDVQAQQLTNVMPT
                     MDTKKNSSDLQNSNWTGSVEISKVLRESFNPLIKFSLSEAINKSELTIGNNSSAVAGF
                     IHPVNGYLVYVIYLLNESNEVTKVITDVGTGDILNVKNMTIEEMMFNFHHGGKTQSDN
                     HSFKKNNMMETMIGNNASY"
     gene            complement(774..1571)
                     /locus_tag="VIL14_01890"
     CDS             complement(774..1571)
                     /locus_tag="VIL14_01890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenine-N1)-methyltransferase"
                     /protein_id="HEY8522489.1"
                     /translation="MRISVGNYVLLYHTMNKKWLIKVEEEKKMHTHLGIIDISSLIGL
                     EYGMAINTTLHKKIYLIEPTIHDFIMKSERNTQIVYPKDLGYIAIRSGIQNGSKVLEI
                     GTGSAALTTFLASIVKPGGHIFSFDINSDFMKIAKKNLVKAKMEEYVTITQQDIRQGI
                     DLHDFDAAIVDLGDPWTAVEVAYNALKGSGAFIAICPTMNQAEKTSVSLKNNHFTDIE
                     CIEILIRNIEAREGMTRPSMRMIGHTTYLIFARKIFPFNPDDNIELN"
     gene            complement(1631..>3499)
                     /gene="argS"
                     /locus_tag="VIL14_01895"
     CDS             complement(1631..>3499)
                     /gene="argS"
                     /locus_tag="VIL14_01895"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: protein motif:HMM:NF012952.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HEY8522490.1"
                     /translation="PKTEFGDLTTNIAFLLSKRIQKKPNEIAKEIVSNSINLQLKNIG
                     KDSLILNANAHISGHINFNINYAIFNKFLLKLVNQKDLLLPSSGPNKQIVIEHTSVNP
                     NKALHIGHLRNVIIGDSLYRLFKLTNHKTIVLNYIDDSGVQVADLIVAFKFAGFSPDN
                     VEENFKFDQYCGEIYVRMNELYKTNLELIEKRKLVIKEIEQGNTELAQFTHYIVEKIV
                     KQQLESCWRIKSRYDLLVIESQILLSKLWEKTFNLLKEKNIIYYSTKGKNMNCWVLRD
                     EHNEEKVIIRSDGTATYIAKDISFAAWKLNLIDDPFTYTKFSLQWDKSILWKTMLKSE
                     NIDNSLQQKKQIDLFYMEDRPNKVITVIDSRQARLQKIISTVLSNIDQNINNRYIYLG
                     YETVALSPNSVKDIGVELEKITKKIIHMSGRKGIFINADTILDKLHKKACYEVKKRNP
                     DFDDTSVSGIAEGIAVSAIRYNLLRQDIDKMISFDMEEALNLEGDTSLYLQYSFARAM
                     RILEKGNGSLEEFINEKTGNIRCDLLNHTIERDLIKEISKFNIIIEEALNSLNPKIIT
                     KYANRISTKFNAFYENLPVLGAEQILKVSRLMLVKVFVNVLANLFNILGIESFSRI"
BASE COUNT         1143 a          561 c          464 g         1331 t
ORIGIN      
        1 tggttcatta ggcttatatt tgtcaaaaag ggtttcaaaa aaagtgaata tgaaaggaca
       61 taacccatat gtctttcagg atcgatcttg gaaaacttta atatcaatga gtctttatcc
      121 atagttcgaa ttcgtcagaa tttactatca aatattttta taattgcctt ttctttcata
      181 ttctatgaac acaatgttct ataagaaagg attggcgttc tttgctggta ctgctttttt
      241 ggtggcattt ctctttgcct acaattacgt accagttgat gtacaagcac aacaattgac
      301 gaatgtaatg ccaacaatgg ataccaaaaa aaatagctct gatctccaaa attctaactg
      361 gacaggatca gtagaaatat caaaggttct tagggaatct tttaatcctt taattaaatt
      421 tagtttgtct gaggctatta ataaatctga attaactatt ggaaataact cttctgctgt
      481 agcagggttc attcacccgg ttaatggata tcttgtatac gtaatctatt tactcaatga
      541 gagtaatgaa gtaacaaaag taattacaga tgtaggaaca ggagatatac taaatgttaa
      601 aaatatgaca atagaagaaa tgatgttcaa ctttcatcat ggaggaaaga ctcaatcgga
      661 taaccactca tttaaaaaaa ataacatgat ggaaacaatg attgggaata atgcttctta
      721 ttaaattgta acataaatca aaaataataa ttaatttatt tttctttata cttttaattt
      781 aactcaatgt tatcatcagg attgaaggga aagatttttc tagcaaaaat aagataggtt
      841 gtatgtccaa tcattctcat agacggtcga gtcatacctt ccctcgcttc aatattacga
      901 attaaaattt ctatacactc tatatctgta aaatgattat ttttcaatga aactgaagtt
      961 ttctctgctt gattcatagt aggacatata gcaatgaaag ctccacttcc ttttaatgca
     1021 ttatatgcta cttcaacagc agtccatgga tcaccaaggt caacaattgc agcatcaaag
     1081 tcatgtaaat caataccttg tctaatatct tgttgtgtaa tggttacata ttcctccatc
     1141 tttgctttaa caagattttt ttttgcaatt ttcataaagt ctgaattaat gtcgaatgaa
     1201 aaaatatgtc caccgggttt tactatgctt gcaagaaatg ttgttaaagc tgcacttcct
     1261 gttcctattt ctaatacttt tgatccattc tgaattccac ttcttatagc gatatatccc
     1321 aggtcctttg gataaacaat ttgagtattt ctttctgatt tcataatgaa atcatgaata
     1381 gtcggttcta ttaagtaaat ttttttgtgt agagtcgtat ttattgccat accgtattcc
     1441 aaaccaatta aagaagaaat atcaataatt cctaaatggg tatgcatctt tttttcttct
     1501 tctactttta taagccattt cttattcata gtatgataaa gcaatacata gttaccgaca
     1561 ctgattctca tatgatttac ttaaataatc cacaattaat atttattata aatatacagg
     1621 agttgaatag ttatattctt gaaaatgact ctattcctaa aatgttgaaa agattagcta
     1681 aaacgtttac aaataccttt actaacatta gtcggcttac cttcaaaatt tgctctgcac
     1741 ctaaaacagg taaattctca tagaaagcgt tgaattttgt agagattcta ttcgcatatt
     1801 ttgttataat ctttggattc agtgaattta atgcttcttc tataattatg ttaaactttg
     1861 atatctcttt aatcagatct ctctcaatag tgtggtttaa aaggtcacat cttatattac
     1921 cagttttttc attgataaat tcttctaaag agccattccc tttttctaga attctcatag
     1981 cacgtgcaaa tgagtattgc aaatataatg aagtatctcc ctcaagattt aatgcctctt
     2041 ccatatcaaa agatatcatt ttatctatat cctgtcgcag caaattatat ctaattgctg
     2101 aaacggcgat tccttctgct attccggata cagaagtatc atcgaaatca ggatttcgtt
     2161 tctttacttc ataacatgcc ttcttgtgca atttatccaa aatagtatcg gcattaataa
     2221 aaattccttt tcttcctgac atatgaatta ttttcttggt tatcttctct aattccactc
     2281 caatatcctt aacactatta ggactcaatg caacagtctc atatccaaga tatatgtatc
     2341 tattattaat attttgatct atattactta aaacagtcga aattattttt tgtaatcgtg
     2401 cttgtctaga atctattaca gttattacct tattaggtct atcttccata taaaataagt
     2461 caatttgttt tttttgttga agagaattat caatattttc tgactttaac atagttttcc
     2521 ataagatgga cttatcccat tgtagagaaa atttggtgta cgtaaaggga tcatctatta
     2581 gatttaattt ccatgctgca aatgaaatat cttttgcaat atatgtggca gttccatcac
     2641 ttcttattat taccttctct tcgttgtgtt catctcgaag cacccaacaa ttcatatttt
     2701 tacctttagt tgaataatat atgatatttt tttctttcaa caaattaaat gttttttccc
     2761 atagcttcga taataaaatt tgtgattcta ttacaagtaa atcatatctc gatttgatcc
     2821 tccaacaaga ttccagttgt tgttttacga ttttttcaac tatataatgt gtaaattgag
     2881 ctagttctgt gtttccttgt tctatctctt taataactaa ctttcttttt tcaattaact
     2941 ctaaattagt cttatacaat tcattcattc taacatatat ttcaccacaa tattggtcaa
     3001 atttaaaatt ttcctctaca ttatctggac taaaaccagc aaacttaaag gctacaataa
     3061 gatctgcaac ttggacacct gaatcatcta tatagtttaa tacaatagtt ttgtggtttg
     3121 tcaatttaaa taatcgatat aatgaatcac ctattatgac atttctaagg tgtccaatat
     3181 gtaaagcttt attcggattt acgctagtat gttcaatgac aatttgttta ttaggaccac
     3241 ttgatggtaa caataaatct ttttggttaa ccaattttaa aagaaattta ttgaaaatag
     3301 cataattaat gttaaagtta atatgcccgg atatgtgagc atttgcattt aaaatcaaag
     3361 aatcttttcc tatatttttt aattgaagat taatagaatt ggaaacaatt tctttagcaa
     3421 tttcattagg ttttttttgt attcttttac taagtaaaaa agcaatgttt gttgttaaat
     3481 caccaaattc tgtttttgg
//
LOCUS       DATCMF010000150         2604 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_217206, whole genome shotgun sequence.
ACCESSION   DATCMF010000150 DATCMF010000000
VERSION     DATCMF010000150.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2604)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2604)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2604
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_217206"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(338..565)
                     /locus_tag="VIL14_01900"
     CDS             complement(338..565)
                     /locus_tag="VIL14_01900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522491.1"
                     /translation="MDKKKKNEMRIIKKNDSNKEDYTFVSNDNILNNTKNNESINNKI
                     KSGTKPDNRIEKKIHSKKVDNKGRKILGKSM"
     gene            complement(718..972)
                     /locus_tag="VIL14_01905"
     CDS             complement(718..972)
                     /locus_tag="VIL14_01905"
                     /inference="COORDINATES: protein motif:HMM:NF026297.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEY8522492.1"
                     /translation="MRDELRRILTIISDLTHNDTNSSVKDTEIIAEANRQSEEIEKYL
                     NELQSLGLIQEDSSRPANVDYGMYRITREGINEIYNKEFR"
     gene            1346..1690
                     /locus_tag="VIL14_01910"
     CDS             1346..1690
                     /locus_tag="VIL14_01910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522493.1"
                     /translation="MLLEIFIMWGCVDLKDCFSAGDLSNIASTYIGIIIGGLIGGFIS
                     WLIYNRQEKTAVIQKEIQDHILNLEEKHEISLKKHENILEKIQIVEQNHDEMLNKILT
                     VDKKINSLLESK"
     gene            complement(2010..>2604)
                     /locus_tag="VIL14_01915"
     CDS             complement(2010..>2604)
                     /locus_tag="VIL14_01915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522494.1"
                     /translation="IVKSLMHTLIYLSNVYIYMSAKENTTKFNKDNNNYNERTTNTLN
                     QQQDAINKTLDNTLQNVKRTTDEATREIPRYTQRIAEYQEQTIQTIKDIASDFIEAQK
                     QVVNSFQSQVDRNSGGVWDVYNPKRIAENHAVMVNNFTSYLLNTSNLINNALASNMRV
                     YNTALEQTRDNLKAFAKTNTNYIQSVSGNSQKREVNY"
BASE COUNT          846 a          344 c          394 g         1020 t
ORIGIN      
        1 aactaagagt aaacagtaga attgattgat taccattagt atgtattaat aatagtgtac
       61 attgctgctg aaaaaaactt ggtcatctaa taagaattaa tggttatatc ctcagatgat
      121 taaagcaatc aaaaaactta aagactctat cattcttgtc ttttctccta ctagattgtc
      181 aaatttcatg aattatggat aaatttaggt gaacccgaga agactacggg cccgtcggga
      241 gtggaaccgg ccaggtagta gggttctatt acatagtatt tagctttttg ataaattata
      301 ttctacaatg tgattattca tatactggcg aatgccctta catacttttt cctaaaatct
      361 ttcttccttt gttatctact ttctttgagt gaatcttttt ttcaattcta ttatctggtt
      421 tggttccaga cttaatctta ttatttatag attcattatt ttttgtatta tttagaatgt
      481 tatcgttgct aacaaaagta taatcttcct tattagaatc attttttttt attatcctca
      541 tttcattctt ttttttctta tccatttctt caacctattt tatatatgta caagttatca
      601 attaatgtta ttgcaaaata aatgatgaat gaattagtga attgctaatt aattttgaat
      661 tgtgtatttc gcatattagt ataacaaatt ggaatcaaaa aatattagat actatctcta
      721 tcgaaattct ttattgtata tttcgtttat gccttctctg gtaattctat acattccata
      781 gtctacatta gcaggcctgg agctgtcttc ctgtattaaa ccgagtgatt gtaattcatt
      841 taggtatttc tcgatttctt cagattgacg attagcttct gcaattattt cagtatcttt
      901 tacacttgaa tttgtatcat tatgagttaa atcgctgata atagtcaaaa ttcttcttaa
      961 ttcatctctc atcgacatac catatctgga ttaacaactt aatataaagt aaaataaggc
     1021 taaatcactt aagattactt agttataaag acattctaat gggaaaagta gactataatt
     1081 acaggtataa taatcaaaat attgaccttt cttttctttt atcattttat cattccgagt
     1141 ctattgtaat ttcattttta aatgtttcaa agttggaaag gcaaggagca gatttagatt
     1201 attaactatg gacagaagac attctttttc tatttatatc gtttggtact tatagatttt
     1261 acagtactat cagaacgggt taggtgactt tacacagcct ttacaaatca ataaaataaa
     1321 aagtaacgaa tcaagttcat gtaatatgtt attagaaata ttcataatgt ggggatgtgt
     1381 cgacttgaaa gattgtttta gtgcaggaga tttatccaat attgcttcta cttatatagg
     1441 tattataata ggaggattaa tcgggggctt tatcagttgg ttgatataca atagacaaga
     1501 gaaaactgcc gttatacaaa aggaaataca agaccacata ttaaacttag aagaaaagca
     1561 tgaaattagt ctaaaaaagc acgaaaatat tttagaaaag atacaaatag ttgagcaaaa
     1621 tcatgatgaa atgttaaaca agattttgac agtagataag aaaataaatt cattgttaga
     1681 aagtaaataa taataatttc aaagaattaa ttttatttct ttctagttaa agatgaatag
     1741 ctaaacttat gtcaaacact acttaattta ttattactat caaatatagt gaacccgaga
     1801 aaactactga cccgtcgaga gtaataccga tagcgattct aaaagaggag tctactatta
     1861 tagataccct acaatcttgt atttagcttt taatattaga aacttaattt taagatatta
     1921 aaaaatataa aataatatta ttagatataa gcgtttaaaa aaatagaata gaaagatttg
     1981 gactaggtta agttaaaacc tagtagttgt tagtaattta cttctctttt ttggctatta
     2041 cctgatactg attgtatgta attggtgttt gtttttgcga aagcctttag attatcacgt
     2101 gtttgttcaa gtgctgtatt gtatactctc atattggatg ctagagcatt gtttattaga
     2161 ttgctagtat ttaataggta acttgtaaag ttgtttacca ttactgcgtg attttctgcg
     2221 attctttttg gattatatac atcccatacg ccaccactat ttctatctac ttgtgattgg
     2281 aaagagttta ctacttgttt ttgtgcttca ataaagtcag aagctatatc ttttatagtt
     2341 tgaatagttt gttcttgata ttcagcaata cgttgtgtat atcgtggaat ttctcgtgtg
     2401 gcttcgtctg ttgttctttt tacattctgt aaagtgttgt ctagtgtctt gtttattgca
     2461 tcttgttgtt gatttaaggt gttagttgtt ctttcattat aattattgtt gtctttgtta
     2521 aatttagttg tattttcttt tgctgacatg tatatataca cgttactaag atatataagc
     2581 gtatgcatta atgactttac aata
//
LOCUS       DATCMF010000151         2360 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_621344, whole genome shotgun sequence.
ACCESSION   DATCMF010000151 DATCMF010000000
VERSION     DATCMF010000151.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2360)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2360)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2360
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_621344"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..359
                     /locus_tag="VIL14_01920"
     CDS             <1..359
                     /locus_tag="VIL14_01920"
                     /inference="COORDINATES: protein motif:HMM:NF019127.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF1259 domain-containing protein"
                     /protein_id="HEY8522495.1"
                     /translation="EMVPAVVNNTGTFNSKDTANNQTSTSPQKQDNLKVAFGEWSVID
                     EEVVPVQKVMQKYNWTQTALHHHMLNESPKILFLHWSVTGDANELIKQAKEIIMQTST
                     YQNLTGNTRTPTSGGP"
     gene            1925..>2360
                     /locus_tag="VIL14_01925"
     CDS             1925..>2360
                     /locus_tag="VIL14_01925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522496.1"
                     /translation="MSSHKIESDNKQIQNKSNNPSQQQKEQHAQQIAEHTIATTATIS
                     KTTNEDTRRIHENQKITKAILDKSTDIANRHQQQIIKAIKVSTDNYNLLQNNILNTYQ
                     SAFSKFINNTSDDNKSYNVAVLEQIKVFNKINQNVIDNAINNT"
BASE COUNT          963 a          339 c          275 g          783 t
ORIGIN      
        1 ttgaaatggt accagcagtt gtgaataata ccggaacctt taattcaaaa gatacagcca
       61 ataaccaaac atcaacatct cctcaaaaac aggataatct aaaagtagca tttggagaat
      121 ggtctgtaat agatgaagaa gtagtaccag ttcagaaagt catgcaaaaa tacaattgga
      181 cacaaaccgc attgcaccat catatgttaa atgaatcacc aaagatctta ttcttgcatt
      241 ggtcagtaac tggtgatgct aatgaattga ttaaacaagc aaaggaaata ataatgcaaa
      301 catcaacata tcaaaacctt acaggtaata cacgaacacc aacatcaggt ggcccatagc
      361 atataggagt taaatattaa ttataaatct atttttttta aataatttac ttatttatta
      421 ttaaatccta ataataaaag ctaaattctt ttattattat catcattgtc ttatagtttt
      481 gcatctaata ttttggttct gttgaatcat cgggtattgt tctaatgggt attgaaaagt
      541 gggtgtctac cgtaacatcc actacctaga gtttgcacaa gagataaggt gcattatgac
      601 aacagaaggt agaataaaag attatagatt ttggatgtta tacgaccaac taacacccat
      661 tggaagatgg ctcaaatacc gactttgagc atataatagt aaaccttggt aagataaaag
      721 attgttgatt tctggttagt agtaatcaga gaaataaaat atagaatttt aaacaattct
      781 taaaatcatt tttatttttt attaggcgta aattacaaat tgattgatat acaataacaa
      841 tagtttgtta attaaaatct aaacataaat ttacacacat tgataaatac aaaattatta
      901 taataatatt acctaatagt agtttaaaaa ctacgaagcg caaatagtct tgttggcatt
      961 gtcgttattg tcatagtctg gacaatctcc ctataagccc aattatacta ctacttcaga
     1021 ctatgacaat taatttctaa tcaaacaaaa ttatctctaa tcattaaata gaatattagc
     1081 agtgttatta caccagtcat aaaaacttca acaattccat ggccttctat tgttattgat
     1141 aatattcctc aataataata gttggttatt gttttaactt ttaaataaaa gataattaaa
     1201 ttaaataaat aatgtactac tctagaggta taaatttctt atttacgaaa cccatgtgga
     1261 atactcatgg tttctaccga acccaaatga aattagtctt ttattctgag attatcttac
     1321 ttatattgtt tctaacaata aaagcatcat ctatttctga tatattgtaa aagtgaaatt
     1381 tgttgtcagt aatcaaaaca aatacagtag gtgattcaag accattatgt cttttcgata
     1441 atatgcctct gaccatcgta ttacaaatta aattcttatg aggtttaaca atttattcta
     1501 aatcctagat aaaatgttga attattaaat caaaatgttc ttcatattct tccactgaac
     1561 aaaacgactc tccgcaaaga caatagtatt tcctttcatt agaatcttga aataacacaa
     1621 atagtaatag aatacaaaat atatatagat attacgaaat ttgataaaaa ataacaatgt
     1681 taatttatcc aattttatcc ttggaatgtt atttattcta taattatgat atttattcct
     1741 tcaaatttct attattaaag ttgtaatttt gttaatatat ttaataaata atgtatttac
     1801 aatatactat tagctttctc atatataatt agagatttat tagagagaac ttcaattatt
     1861 tatttttaac tttctaatat attataattt ataataaaga taatataaaa attattaaat
     1921 aaaaatgtca agtcataaaa tcgaaagcga taataagcaa atccaaaata aaagcaataa
     1981 tccatcacaa caacaaaaag aacaacacgc tcaacaaata gcagaacata ctatagcaac
     2041 aacagccact atttcaaaga ctacaaatga agatactcgc agaattcatg agaatcaaaa
     2101 aataactaaa gcaattttag ataaaagtac agatattgca aacagacatc aacaacaaat
     2161 tattaaagca attaaagtat ccactgataa ttataaccta ttacaaaata atattcttaa
     2221 tacttatcaa tcagcattct caaaatttat aaataatacc tcagacgaca ataaatctta
     2281 taatgttgca gttttagaac aaataaaagt atttaataaa attaaccaaa acgtgataga
     2341 taatgcaatt aataatacta
//
LOCUS       DATCMF010000152         2196 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_350647, whole genome shotgun sequence.
ACCESSION   DATCMF010000152 DATCMF010000000
VERSION     DATCMF010000152.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2196)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2196)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2196
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_350647"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..836
                     /locus_tag="VIL14_01930"
     CDS             <1..836
                     /locus_tag="VIL14_01930"
                     /inference="COORDINATES: protein motif:HMM:NF019346.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY8522497.1"
                     /translation="LEGVPGLAKTLLIKTLSECIDSNFVRLQFTPDLLPADIIGTKIY
                     DHNSTSFRTVKGPIFSHFVLADEINRAPPKVQSALLEAMQEKQVTIQGETYPLKEPFF
                     VMATQNPIESEGTYKLPEAQIDRFMFKLLISYPRKDEESKIIHRFTEGIDVKIQKIIS
                     ADQLIEIQKFNHRIYTDQKIRDYVAQIVDATRHPEDYDLDIDNKIEYGASPRASLWLT
                     VGAKSNALLNGRGYVIPQDIQDIVYDVLRHRILLTYDAEAENITSDQIIKTILEKIPV
                     P"
     gene            867..1742
                     /locus_tag="VIL14_01935"
     CDS             867..1742
                     /locus_tag="VIL14_01935"
                     /inference="COORDINATES: protein motif:HMM:NF024909.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF58 domain-containing protein"
                     /protein_id="HEY8522498.1"
                     /translation="MNQTQDILKQIKKLEISTKHLVDELITGNYHSTFKGQGIEFSEL
                     REYRSGDDIRSIDWNVTARYNQPYVKEFVEERDLQVYFFLDMSSSGSFGNKIPKKRKA
                     LEIVASLMFAALKNNDNIGIFLFTDKIEKFIPARKGKKHVLQILSSIISFQPKSKTTN
                     LKTTLVQVSQILKKRCILFILSDFFDSNDYIKPLKILRRKHDVIILKISDLREQEIPE
                     IGLIQLEDEETGEQILVDTSDPVFQKKYPEIVSNNESQLILNLIKLKIDFIKILSDEN
                     YATPLRKFFKKRIRR"
     gene            1748..>2196
                     /locus_tag="VIL14_01940"
     CDS             1748..>2196
                     /locus_tag="VIL14_01940"
                     /inference="COORDINATES: protein motif:HMM:TIGR02226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BatA domain-containing protein"
                     /protein_id="HEY8522499.1"
                     /translation="MAGFDSQIVLIALLVIPGFYFLYYKIISKKRKEAIKFSNVEFIK
                     SAIGNKRKSRRDLWLFFLSLATIGLMIIGFANPHIPLEQSKEGVNVVLVIDVSGSMQA
                     TDYKPDRLEAAKTSAKILVESLPPKDNAGIVIFETGATTAAYLSPNK"
BASE COUNT          826 a          333 c          358 g          679 t
ORIGIN      
        1 tattagaggg cgttccaggt cttgccaaaa ctttattgat taagacatta tcagaatgca
       61 ttgattccaa ttttgttcga ttacaattca ctcctgattt attgcctgca gatatcattg
      121 gaaccaaaat ttacgatcat aattctacct catttaggac agtaaaagga ccaatttttt
      181 ctcattttgt tttagcggat gaaataaaca gagcccctcc aaaagtccaa tcagcattat
      241 tagaagcaat gcaagaaaaa caagtaacca tacaaggaga gacgtatcca cttaaggaac
      301 cattttttgt tatggctacc caaaatccta ttgaatcaga aggtacctac aagctacctg
      361 aagcacaaat tgatcgattt atgtttaagc tgttgatttc atatcctaga aaagatgaag
      421 aatcaaaaat tattcataga ttcacagaag gcattgatgt taaaatacaa aaaataatct
      481 ctgctgatca attaatagaa attcaaaaat ttaatcaccg aatttataca gatcaaaaaa
      541 ttcgtgacta tgtagcacag attgttgatg cgacaagaca tccagaagat tatgatcttg
      601 atattgacaa taagatagag tatggtgcat caccgcgggc ttctctctgg ctcacggtag
      661 gtgcaaaatc caatgcactt cttaatggaa ggggatacgt aattccacaa gatattcaag
      721 atattgtcta tgatgtacta cgacacagaa ttcttcttac ctatgatgca gaagcggaaa
      781 atattactag tgatcaaata attaaaacta ttctagagaa aattcctgtt ccttaggtat
      841 tgatataatc atctaaaagt gatccaatga atcaaacaca agacattcta aagcaaatta
      901 aaaaactaga aatttctaca aaacatttag tagatgaatt aatcacagga aattatcact
      961 ccacatttaa aggacaaggt attgaatttt cagaacttcg agaatataga tcaggagatg
     1021 atatacgttc tatagattgg aatgttactg cgagatacaa tcaaccttac gttaaagaat
     1081 ttgttgaaga acgagatctg caagtatatt tttttctaga tatgtccagt tctggaagtt
     1141 ttggaaataa aattcctaaa aaaagaaaag cattagaaat tgtagcaagc ttgatgtttg
     1201 cagcactgaa aaataatgat aatattggta tttttttatt tactgataaa attgaaaaat
     1261 ttattcctgc acgaaagggg aaaaaacacg ttctgcaaat tctaagctca atcatttctt
     1321 tccaaccaaa atcaaagact actaacttga aaacaacact cgttcaagtt tcacaaattc
     1381 taaaaaaacg ctgtattttg tttatacttt cggatttttt tgattcaaat gattatataa
     1441 aaccgttaaa aatattgagg agaaagcatg atgtcattat tttaaaaatc tctgatttgc
     1501 gtgagcaaga aattccagaa ataggattaa tccagcttga agatgaagaa acaggagaac
     1561 agattcttgt tgatacatcc gatcctgtat ttcaaaaaaa atacccagag attgtatcaa
     1621 ataatgagtc acaattgatt ttaaatctaa taaaattgaa aatagatttt ataaagattt
     1681 tatctgatga aaattacgca actccattaa gaaaattctt taaaaaaaga attaggagat
     1741 aatgattttg gccggattcg attctcagat tgttttaatt gcgcttcttg ttattcctgg
     1801 attttatttt ctgtattata aaataatatc taaaaagaga aaggaagcga taaaattcag
     1861 taatgtagaa tttatcaaat ctgcaatagg aaataaaaga aaatctcgga gagatttatg
     1921 gttatttttt ctatctttgg caacaattgg attgatgatt ataggatttg ctaacccaca
     1981 tatcccactt gaacaaagta aagaaggagt aaatgtagtg cttgtgattg atgtttcagg
     2041 cagtatgcaa gctacagatt ataaacctga cagacttgaa gctgcaaaaa cttctgcaaa
     2101 aattcttgtt gagtcattac ctccaaaaga taatgcagga attgtaatat ttgagacagg
     2161 cgcaactact gcagcttatt tgagtccaaa taagga
//
LOCUS       DATCMF010000153         1769 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_283631, whole genome shotgun sequence.
ACCESSION   DATCMF010000153 DATCMF010000000
VERSION     DATCMF010000153.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1769)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1769)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1769
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_283631"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..266
                     /locus_tag="VIL14_01945"
     CDS             <1..266
                     /locus_tag="VIL14_01945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522500.1"
                     /translation="TVLVGLFFNIISLKLVMIIESRRTLIVGGLYSIPADIGSGKTIG
                     AHKLTLLNVAIRILSKLSMAIFCLQGLYPEIKSPLITEYPSNK"
     gene            515..1036
                     /locus_tag="VIL14_01950"
     CDS             515..1036
                     /locus_tag="VIL14_01950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription factor"
                     /protein_id="HEY8522501.1"
                     /translation="MHSVKYEDSFVKIANLIGGEEYLKVARALLNTEDATDEEIASAT
                     GLRINIIRKVLYDMFGKALITGLRVKDEKKGWFVYRWRAKQEQVDNFIDNQKKKILDR
                     VQKRLEYEESSEFYHCGNKDCPRVKFDSAVESFFKCNSCKGPLNMVDNARVKEALRYK
                     INQITEDISSSRQ"
     gene            complement(1074..1727)
                     /locus_tag="VIL14_01955"
     CDS             complement(1074..1727)
                     /locus_tag="VIL14_01955"
                     /EC_number="1.1.1.302"
                     /inference="COORDINATES: protein motif:HMM:TIGR00227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone
                     5'-phosphate reductase"
                     /protein_id="HEY8522502.1"
                     /translation="MRITLNTAMTVDGKIATTSGDSAISSREDLIRVHKLRASADGII
                     VGISTVLADNPRLTVRLAGKRVKRKDPARIVIDSTGKIPLNSRILLTASRIKTIVAVT
                     KLAHIDTLRKIKKTGAIVIVSGRQTVNLKKVFSIIKQMGIRKILVEGGGEINWSLLRL
                     GIVNELIVTIAPKIVGGRQATTLVEGQGYRRISQGIKLHLKQAQIQNNGELVLHYKL"
BASE COUNT          559 a          342 c          328 g          540 t
ORIGIN      
        1 ttacagtttt agtcggatta ttcttcaaca taatttccct taaattggtg atgatcattg
       61 aaagcagacg aaccctaatc gtcggtggat tgtatagtat acctgcagat ataggttcag
      121 ggaaaactat aggggctcac aagttaactt tattaaatgt ggccatccga attctatcta
      181 aacttagcat ggccatattt tgtctacaag gattatatcc tgaaattaag tctccattga
      241 ttaccgaata tcctagcaat aaataatcct atcctcgtca aactacagcc taaagctctg
      301 tcagtaaaat aataattacg tcgtaagcag tcatataaaa agaaaagagt ctcaattaac
      361 agtactgcac ttatggagag aagataaaag gggataattc aacatggaag tgggaaaaca
      421 tggctaagac tgttttgacg tcaattgagt cgatgatgcc atcagagaaa agggatcagg
      481 taactatata tccaaaaata gacgatataa ttatatgcac tcagtgaagt atgaggattc
      541 ttttgttaaa attgcaaact tgattggagg agaagaatac ctcaaggttg cccgcgctct
      601 tttaaatact gaggacgcca cggatgaaga gattgctagt gctactggct taagaatcaa
      661 tatcataaga aaagtccttt acgatatgtt tggaaaggca ctaataaccg gtctaagagt
      721 aaaagacgaa aaaaaggggt ggttcgtata caggtggcgt gcaaaacaag agcaggttga
      781 caattttatt gacaatcaaa agaaaaaaat ccttgacaga gtgcaaaaac gcttggaata
      841 tgaagaatct tcagaattct atcactgcgg aaataaagac tgcccccgag tcaaatttga
      901 ttccgccgtt gaatccttct tcaagtgtaa cagttgtaaa ggaccactca atatggtaga
      961 taatgccagg gtcaaggaag ccttacgcta caagattaat cagataacgg aagatatatc
     1021 gtcaagcaga cagtaagaag tcaaccaagt ttgctatccc atatttacat gatttatagt
     1081 ttataatgta agactagctc tccattattt tgtatttggg cttgttttaa gtgcagttta
     1141 ataccttgcg aaatccttcg atatccttgt ccttctacta atgtagtcgc ttgtctgcca
     1201 ccgactatct tcggtgcgat tgttacgatt aattcattca caattcctaa acgaagcaga
     1261 gaccaattta tttcaccccc tccctcgaca agaattttcc tgattcccat ttgcttgatg
     1321 atagaaaata cctttttcaa attaaccgtt tgtctgcctg aaacaataac tattgcgccc
     1381 gtttttttga ttttccttag agtatctata tgtgccaatt tggtaactgc aactattgtt
     1441 tttattctag atgcagtgag cagaatacgt gaattaaggg gtatctttcc tgtactgtct
     1501 attacaattc ttgctggatc tttcctctta acccgctttc cagccaacct aaccgtaagt
     1561 cttggattat ctgcaagaac agtggatatg cctactataa tcccatcagc tgaagcccgt
     1621 agtttatgaa cccttattag atcttccctt gaagagatcg ctgaatctcc tgaggttgtt
     1681 gcaattttac cgtcaacagt catagcagta tttaatgtta ttcgcatttt caattctcac
     1741 aatccagcac cgtctaccag ttttccgtc
//
LOCUS       DATCMF010000154         1981 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_350717, whole genome shotgun sequence.
ACCESSION   DATCMF010000154 DATCMF010000000
VERSION     DATCMF010000154.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1981)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1981)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1981
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_350717"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(116..532)
                     /locus_tag="VIL14_01960"
     CDS             complement(116..532)
                     /locus_tag="VIL14_01960"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HEY8522503.1"
                     /translation="MTTEFSCGALVYFIDNQQMIFLLLHYFSGHWDFPKGNKERGENH
                     IDTIRREIKEETGISDVTFIDGFEKEISYNYTRENQLISKKVLYRLARTHSKDVVLSS
                     EHTNFEWDPYEIALKRLTYKKSKEILTEGYKFLKNL"
     gene            complement(569..712)
                     /locus_tag="VIL14_01965"
     CDS             complement(569..712)
                     /locus_tag="VIL14_01965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522504.1"
                     /translation="MHQHGFYDPHLKKWYCSYFMDEEEWLNIHDYLPTQFVEQLSPTE
                     SSE"
     gene            complement(754..1482)
                     /gene="uppS"
                     /locus_tag="VIL14_01970"
     CDS             complement(754..1482)
                     /gene="uppS"
                     /locus_tag="VIL14_01970"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl diphosphate synthase"
                     /protein_id="HEY8522505.1"
                     /translation="MESQISRDPLPKHVAIILDGNRRWAKYHFFGIDKAHYIGAEKAE
                     ELLTWIYDLEIKITTVYVLSNENLERENEELTNIYDLLSKKLSKLRDDNRIHKRKMKI
                     KAIGNIELLPKKLQQILKILEEETSSYNSMFLNIAVAYGGQQELVDAIKKIASLVSAG
                     TLKVNDINKKIIESCLYTSHLPQSDPDLILRTSGEKRLSGFLLWQSAYSELVFMDVFW
                     PEFRKIDFMRAIRTYQNRIRRFGK"
     gene            complement(1627..>1981)
                     /locus_tag="VIL14_01975"
     CDS             complement(1627..>1981)
                     /locus_tag="VIL14_01975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522506.1"
                     /translation="IREDMTNFQIFTNKEIVGSFIRGTILLLWIGIGTILSGTLLSNW
                     FRGSIKTMSDILRLVILILLYYPLLQFTSVLTEGTSPFNLISSLLIGLATTLVAATFL
                     YQYYRNRKGGESLKN"
BASE COUNT          662 a          338 c          249 g          732 t
ORIGIN      
        1 tttagtgaat atattgtaat ggttagcatt taaaaacaat ataagatttg ctctttaacc
       61 tcaaataaat atttcttatt caaatacaag atcattatat ttacaataca agaaattata
      121 aattttttaa aaatttatag ccctcagtga ggatttcctt agacttttta tatgtaagcc
      181 tttttaaagc gatttcataa ggatcccatt cgaaattcgt atgctctgat gacaatacaa
      241 catcttttga atgtgtcctc gctaaacgat ataggacttt tttggagatc aactgattct
      301 cacgtgtata gttatatgat atctctttct caaaaccatc gataaaagta acatcgctaa
      361 taccagtctc ttctttaatt tctcttctta tagtgtcaat atgattttcc cctctttctt
      421 tatttccttt tggaaaatcc caatgcccac tgaaataatg taagagaaga aatatcattt
      481 gttgattatc aataaaatag actaatgctc cacaagaaaa ttcggttgtc acaaaatcac
      541 catcccaaat tcagactact gtatgccatt attctgaaga ttcagtagga gataattgct
      601 cgacaaattg agtaggtaag taatcatgta tattcaacca ttcctcttca tccataaagt
      661 agctacaata ccattttttc aaatgaggat cataaaaacc atgttgatgc atttgataat
      721 tagagaatta atacgttatt tttagttatt actttatttt ccaaatctcc ttatacgatt
      781 ttgataagtc cttatagcac gcataaaatc aatcttcctg aactctggcc aaaaaacatc
      841 cataaatacc aattcgctat aggcactttg ccaaagtaaa aaaccactta atcttttttc
      901 tccagaagtt cgaagaatta agtctggatc cgattgtgga agatgagaag tatagagaca
      961 tgattcaatg atctttttat taatatcatt aacttttaat gtgcccgcac taaccaaaga
     1021 agctattttt ttaatagcat ctactaattc ttgttgtcca ccatatgcca cagctatatt
     1081 taaaaacatt gaattgtatg aggaggtttc ttcttctaag atttttagta tttgttgtaa
     1141 ttttttaggc aataattcta tattccctat agctttaatt ttcatttttc ttttatgaat
     1201 acggttatca tctctaagtt ttgataattt tttactcagt aaatcgtaaa tattagttaa
     1261 ttcctcattt tctctttcga ggttttcgtt cgaaagtaca taaacagtag taatttttat
     1321 ttctaaatca tatatccagg ttaacaattc ttctgctttc tccgcaccta tatagtgagc
     1381 tttatcaatt ccaaaaaaat ggtatttagc ccatcttcta tttccgtcta agataatagc
     1441 tacatgcttt ggtaagggat ctcttgatat ctgagactcc aaccagcgtt cataaatttt
     1501 ataaaaaccc gataacctaa atagtaattc aaacaaaact tgactagaaa aatttatcat
     1561 tttcatttaa tatttttctt taaaccataa agtgtttaat acttatttat tttattttct
     1621 cgattactaa ttcttaaggg attctccgcc ttttctattt ctataatatt gatatagaaa
     1681 tgtggctgca accaatgttg tagctaatcc aattagtaat gaggaaataa gattaaaagg
     1741 actcgttcct tctgtcagta ctgaggtaaa ttgtaagagt ggatagtata ataaaatcaa
     1801 tatgacaagt cgtaaaatat ccgacattgt tttgatactt cccctaaacc aattacttaa
     1861 taaagtacca gataatattg ttccaatgcc aatccacaat agcaagatag tacctctaat
     1921 aaaacttcca actatctctt tgttggtaaa aatttgaaaa tttgtcatat cttctctaat
     1981 g
//
LOCUS       DATCMF010000155         2463 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_85291, whole genome shotgun sequence.
ACCESSION   DATCMF010000155 DATCMF010000000
VERSION     DATCMF010000155.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2463)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2463)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2463
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_85291"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..352)
                     /locus_tag="VIL14_01980"
     CDS             complement(<1..352)
                     /locus_tag="VIL14_01980"
                     /inference="COORDINATES: protein motif:HMM:NF017758.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF892 family protein"
                     /protein_id="HEY8522507.1"
                     /translation="MFNSNNSKNNKFIDCLNEILSAENAGIERLHRRIEETPIQESKN
                     ILQDHITEEKEQQQRLKNIISYYGRKPTDSKADILSFNSLTTAISNTMKNNTQNNTTI
                     KSTGHDNNNNNNNSA"
     gene            complement(874..1317)
                     /locus_tag="VIL14_01985"
     CDS             complement(874..1317)
                     /locus_tag="VIL14_01985"
                     /inference="COORDINATES: protein motif:HMM:NF021571.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2299 family protein"
                     /protein_id="HEY8522508.1"
                     /translation="MEDVNMTDKIKTWLKDEDVHYNKIEDNSTDLHITLWFSKDIRLE
                     AIVWNDKLTISSNVMYFSEDLKNLLLVNESYCDELDLLLHQQVPNFVFLYSNDELTNL
                     AGVRIFKDIWSDSLTKTSFFDTIVAVQHSIYIVKIKEREWAKLKV"
     gene            complement(1763..2311)
                     /locus_tag="VIL14_01990"
     CDS             complement(1763..2311)
                     /locus_tag="VIL14_01990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease signature motif containing
                     protein"
                     /protein_id="HEY8522509.1"
                     /translation="MRSNQRGIIGIFGIILALIATPLLIISLKNQEFVFLSILLWFVG
                     VLILIWWFKREKSLNLKFAMGIIFTGQIVMFVFGESYIDDNNKFIFNKYILFSLILIV
                     FGLFYFLIKSRKRFAIRQYFSSEIKSQILKEQNYKCASCKKFLNVYDFDHIDNDRSNN
                     DYNNCQALCPICHALKTRKMKK"
BASE COUNT          885 a          330 c          284 g          964 t
ORIGIN      
        1 tagcactgtt attattatta ttattattat catggcccgt cgattttatt gttgtattat
       61 tttgagtatt atttttcatt gtattactga ttgcagtagt taaggaatta aaagaaagta
      121 tatctgcttt tgaatctgtt ggctttctac cataataaga aattatgttt tttaaccttt
      181 gttgttgttc cttttcttcg gttatatgat cttgtaatat attctttgat tcttgtatag
      241 gtgtttcctc tattcttcta tgtaatcttt ctattcctgc attttcagct gataaaattt
      301 catttaaaca atctataaac ttattatttt tgctattatt agagttaaac atatatcaat
      361 atagaaaaca ataaatttaa cgctttatcc agcccattta tctcatttat aagaggatta
      421 ttatctatat cctaagatgt ttctaaatat tctacatcta actattgcga agtatttaga
      481 ggaagtatga tatactcttc aatattcaac ctgattactt tgacttagtt tatacaggta
      541 ttatttactt tgactaacat aatctctaag ctatatccaa atagaatgtt agaacattca
      601 atcactgtga atatagtgtg aaccatgaga cactaagata agtctgtatc tgtctatgct
      661 atattaggaa tttactttta gcactgctat aggagttaat gtcacacacc gtaggttatc
      721 acataggtct agatacgtaa ttatcataaa aagtggaaac cacaaaataa tatatagtat
      781 tgatcaacac ggacttgtgt attaattaga aggttaaaaa tttataaatt tgaatatata
      841 ttaaatcata aaaataaagt tacaaaaata atgttatact tttagtttag cccattctct
      901 ttcttttatc tttactatgt agatactatg ttgaactgca actattgtat caaaaaatga
      961 tgttttagtt aaagaatcag accaaatatc tttaaaaata cgtacaccag ccaaattagt
     1021 taattcgtca ttgctgtaca aaaaaacaaa atttggaacc tgttgatgta atagtaaatc
     1081 tagttcatca caataacttt cattaactag taaaagattt ttgagatctt ctgaaaaata
     1141 catcacgttt gatgaaatag ttaatttatc attccagaca attgcttcta acctaatgtc
     1201 tttgctaaac cataatgtta tgtgtaaatc agttgaatta tcttctattt tattataatg
     1261 gacatcttca tcttttaacc atgttttaat tttatcagtc atatttacat cttccataga
     1321 tttatgtaaa ctgattaaat atttagatgt atgctaatct atcttggtga aatataatac
     1381 aaactttggt taacgctatg cgaatgcaaa gatgggtaaa actatgtaca caataaaacc
     1441 taaagaaaat attatgggaa ctattaattt caaattttac taaaaaaatt gataaaataa
     1501 gaaaaattta agtagaaata tttttgaatt ttgtacttag aaatgaaata ttattattat
     1561 cactaacgcc aagattatag ttattaatta tccgtcttca ataaagtctt caataatcat
     1621 taatccagga gtttaaggaa aggacatagt ttatcaaatt tattttaaaa cttaagtgat
     1681 tatttgcatt gactatgtac tccttaacta attgtgtttt aaccattata ttctaaataa
     1741 ttttatttat tgaacttgaa atttattttt tcatttttct tgtctttaat gcatgacata
     1801 ttggacataa agcttgacag ttattgtaat cgttattgga tctatcattg tctatatggt
     1861 caaagtcata tacattcaag aatttcttac aactagcaca tttgtaattt tgttctttta
     1921 agatttgact tttgatttca ctactaaagt actggcgaat tgcaaatctt tttcttgatt
     1981 ttataagaaa atagaacaat ccaaatacaa ttaaaattaa actaaataaa atatatttat
     2041 taaatataaa cttattatta tcatctatat aactctcccc gaaaacaaac ataacaattt
     2101 gacctgtaaa tattattccc attgcaaatt ttaaatttaa acttttttca cgtttaaacc
     2161 accatatgag tattagtact ccaacgaacc ataataatat tgaaagaaaa acaaactctt
     2221 gatttttcaa ggatattatg agtagaggag tagcaattaa tgcaagaata attccaaaaa
     2281 ttcctattat tcctctttga ttgctcctca tttttttaga tgaaatataa tagatataat
     2341 aacttaccat tgtaaaaata tttctttatt gtttaaaaat aaattataaa agcataccta
     2401 cattttaaga attgttgtag atacattaca aatattttat ccttatcctg aaatttagag
     2461 tta
//
LOCUS       DATCMF010000156         1799 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_218175, whole genome shotgun sequence.
ACCESSION   DATCMF010000156 DATCMF010000000
VERSION     DATCMF010000156.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1799)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1799)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1799
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_218175"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..659)
                     /locus_tag="VIL14_01995"
     CDS             complement(<1..659)
                     /locus_tag="VIL14_01995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase"
                     /protein_id="HEY8522510.1"
                     /translation="MNGVVTDSDLKYIDLKGNLLRNRAEFSTSNMLSFLGHNYEYNVR
                     IDLSGSNFAYVDFKIEDKFIEVIDSESDLEKFKIIKRNLPDLKILGIGHSKYAAKMNE
                     LESFFSFDSNSNQVGSIFIDDPTLAFDYAHILPLVEKCSILHGHTSTIMVEIIGNMKN
                     NLVIDFGEAKRIIKDTLSALDHKFFINRKYLEKEDEVHYHIVFEGPKGYFNLQLPKMT
                     T"
     gene            complement(767..1120)
                     /locus_tag="VIL14_02000"
     CDS             complement(767..1120)
                     /locus_tag="VIL14_02000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522511.1"
                     /translation="MSYDSVKPIVNKVTSTCISLQIFASKELSNPPEKAIAREFSLPT
                     ACSTAAKSAFFRVRNNTKYFLLITTYPIIFLSRMKMVLTICLHTFVFGLFVHILGWTH
                     ESEKSEMTILLSLFN"
     gene            1014..1697
                     /locus_tag="VIL14_02005"
     CDS             1014..1697
                     /locus_tag="VIL14_02005"
                     /inference="COORDINATES: protein motif:HMM:NF012936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase C-terminal domain-containing
                     protein"
                     /protein_id="HEY8522512.1"
                     /translation="MAFSGGLDSSLLAKICKDIQVEVTLLTIGFTESYDISFSREIAS
                     KMGLPHKILKLDDECFESNVNHIRNKIKCNIISHLENCVGFFYIGKFAHANGFRSVLT
                     ANGCDELFCGYDRFRLVYEQGSATLMKFMDEKLENEFVLMQEIDSITREFGIKIKQPF
                     LSPDFISLAKNIPIDQKINGPNDLFRKHILREVAVSMNVPNQSAMQRKKALQYSSGIH
                     KNFCKVYRE"
BASE COUNT          585 a          306 c          318 g          590 t
ORIGIN      
        1 aacgttgtca tctttggcaa ctgtaaatta aagtatcctt ttggaccttc aaaaactata
       61 tgatagtgaa cttcatcctc tttctcaaga tactttctgt tgatgaagaa tttatggtca
      121 agtgcactca atgtatcctt aataatccgc ttggcttcgc caaagtcgat aactaagttg
      181 ttcttcatat tgccaattat ttcaaccata atggttgagg tatgcccatg taaaatggaa
      241 catttttcta ccagtggtaa aatatgtgca taatcaaagg caagggtagg gtcatctata
      301 aatattgacc caacttgatt gctgttagaa tcaaaggaga aaaatgattc taattcattc
      361 atttttgctg catactttga atgtcctatg cccaggatct taagatcagg aagatttctc
      421 tttataattt tgaacttttc caagtcagat tcggaatcta taacctcgat aaatttatct
      481 tcgatcttaa aatctacgta agcaaaattg gatccactaa gatctattct tacattgtac
      541 tcatagttat gtcccaaaaa tgacaacata tttgatgtag aaaattctgc cctatttcgt
      601 aaaagattac ccttgaggtc tatgtattta agatcgctat ctgttacaac tccattcata
      661 gaatttttct tacaaacgaa gggacactca gatataaatt gttatatgca tatgaattac
      721 agtttcttca gtggaagagt ttttagaacc ttgcaatcac atccgttcaa ttaaataggc
      781 ttaacagtat agtcatttca gatttctcgc tttcatgagt ccaacctaag atgtggacaa
      841 acaaaccaaa tacaaaagta tgtagacata ttgttagtac cattttcatt ctcgataaga
      901 atattatagg ataggtagta attagtagaa agtattttgt gttgttacga accctaaaaa
      961 aggcgctttt tgcagctgtg gaacaagccg taggcagcga aaattctctt gcgattgctt
     1021 tttcaggcgg gttggatagc tccttactcg caaagatttg caaggatata caagttgagg
     1081 taaccttatt gacaataggc tttacagagt catatgacat ttccttctca agagaaatcg
     1141 cttctaaaat gggtttacct cacaaaatat tgaagttaga cgatgaatgc tttgaaagta
     1201 atgtgaatca tattcgcaat aaaatcaagt gcaatattat atcacatctt gaaaattgtg
     1261 ttggtttttt ctatattgga aaatttgctc atgccaatgg cttcagatct gttttaacag
     1321 caaacggttg tgacgagctt ttctgcggtt acgatagatt cagattggtt tacgagcagg
     1381 gcagcgctac ccttatgaag tttatggatg aaaagcttga aaacgagttt gtacttatgc
     1441 aggaaataga tagcataaca cgtgaatttg gaattaaaat taaacaaccg ttcctgtcac
     1501 ctgattttat atccttagca aaaaatattc ccatagatca gaagattaat ggtcctaatg
     1561 acttgtttcg aaaacatatc ttgcgagaag tagctgtttc catgaatgtt ccaaaccaat
     1621 ccgccatgca acgtaagaag gctctccagt acagttcagg gattcacaag aatttttgca
     1681 aggtatatag agaatgatcc tttatgtcag attaattttg acaaggcgac ttaattcata
     1741 ttaagacaag gttttagatg aaatccgaag tgttttacat catcagtgga aaaaactta
//
LOCUS       DATCMF010000157         1708 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_32606, whole genome shotgun sequence.
ACCESSION   DATCMF010000157 DATCMF010000000
VERSION     DATCMF010000157.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1708)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1708)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1708
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_32606"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1175)
                     /locus_tag="VIL14_02010"
     CDS             complement(<1..1175)
                     /locus_tag="VIL14_02010"
                     /inference="COORDINATES: protein motif:HMM:NF025017.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEY8522513.1"
                     /translation="MTRFIRNRKIFVEKDLRRIHNDPIIIFQITTRSATKITVVERGI
                     YSIINAALKINYSNYKISIVTEDENDKQKFDHIKNCEIVMVDKKYNTNAIKKSRALQF
                     AVENRRKNGENTSKFWIFHMDDESYVTNQTLLSLLKFIREGKGIAAEGPIVYPLKFEL
                     ANPITALAESVRPFGCYDCVSQMKNPPPLHMHGSNLLVRSDAEDLIGWNFGSTLAEDQ
                     VFGYKLYEKYGKKALGWHGGILLEQPPLNIKDHFMQRRRWILGSLQNINKFPFWHRFK
                     IAFKLTSYFMGFISGIASAILYVITFMSMLPTSIQILVDQNISNPMIWAQYIISSFFP
                     SSFPEITLKINEMASNNSIYPIDIGPVSILLLFPYIMWLLSYQIGLFLNLKHTKKYP"
     gene            1409..>1708
                     /locus_tag="VIL14_02015"
     CDS             1409..>1708
                     /locus_tag="VIL14_02015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522514.1"
                     /translation="MNSSLPSNSSSSNSNSNSNSNSGGNNGSNNNNNSGGGNTGGGAG
                     AAAAGGINNTSLKVLEAYTRDVGRGIARIDYDTMDSLAVSTGDVVEIRGKRRTTAK"
BASE COUNT          583 a          249 c          283 g          593 t
ORIGIN      
        1 aaagggtatt ttttggtatg ttttaagttt aggaagagtc ctatctggta agacaataac
       61 cacatgatat acgggaatag tagtaaaata gaaacaggac ctatatctat aggataaata
      121 ctattattac ttgccatttc gtttattttt aatgtaattt caggaaaaga tgatggaaaa
      181 aatgaagaaa tgatatattg agcccaaatc attggattag atatattttg atcaactagt
      241 atctgaatag atgtaggtag cattgacata aatgttataa catacaatat tgcagaggct
      301 attcctgaaa tgaaacccat aaaataacta gtcaacttga aagcaatttt gaaacgatgc
      361 caaaaaggaa atttgttaat attctgcaat gatcctaaga tccatcttct tctttgcata
      421 aaatgatctt taatatttaa aggaggctgt tccaataaaa ttccaccatg ccaacctaac
      481 gctttttttc catatttttc atagagtttg taaccgaaaa cctggtcttc tgctaaggtt
      541 gagccaaaat tccatcctat taaatcctca gcatctgaac gaacgagcaa attgcttcca
      601 tgcatatgaa ggggaggtgg atttttcatt tgcgatacac aatcataaca tccaaatggt
      661 ctaactgatt ctgctaatgc ggtaattgga tttgctagtt caaattttaa tggatataca
      721 ataggaccct ccgctgcaat ccctttacct tctctaataa attttaataa tgatagtaaa
      781 gtttgattag taacataact ttcgtcatcc atgtgaaata tccaaaattt gcttgtattc
      841 tctccatttt tcctcctgtt ttctacagca aattgtaatg ctctggattt tttaatagca
      901 tttgtattgt attttttatc taccatgact atttcacaat tctttatatg atcaaatttt
      961 tgtttatcat tttcgtcttc cgttacaatt gaaattttat aattagaata attgattttt
     1021 aaagctgcat tgataattga ataaatccct cgttctacca cagttatttt agttgcagat
     1081 cgcgttgtaa tttgaaaaat aataatagga tcattatgaa ttctacgtag atctttttca
     1141 acaaatatct tccggtttct tatgaatctg gtcatggtaa ggaatgcaac aggaattgta
     1201 gagaaccaaa atgttaataa tataacatat aaaaggtgta atgaatccaa ttaaaaagct
     1261 ttaacttatt attaaataaa aactttaact aaattatatt ttaaatattt taatcagatg
     1321 attgcaatta aatttgattc tccttttttt attcttttaa tagtagtaga aacaaagtat
     1381 atgtagtcaa ttcacctaag gtatacaagt gaacagtagt ttgcctagta atagtagtag
     1441 tagtaatagc aatagcaata gcaatagcaa tagtggtggt aacaatggta gtaataataa
     1501 taataatagt ggtggcggca atactggtgg aggtgctggt gctgctgctg ctggaggtat
     1561 aaacaatacc tcactaaaag tgctggaagc ctatactcgt gatgttggta gaggtatagc
     1621 acgaattgat tatgatacca tggattcttt agcagtttct accggtgatg ttgttgagat
     1681 tagaggaaaa cgtagaacta ctgcaaaa
//
LOCUS       DATCMF010000158         1684 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_163162, whole genome shotgun sequence.
ACCESSION   DATCMF010000158 DATCMF010000000
VERSION     DATCMF010000158.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1684)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1684)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1684
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_163162"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            142..1065
                     /locus_tag="VIL14_02020"
     CDS             142..1065
                     /locus_tag="VIL14_02020"
                     /inference="COORDINATES: protein motif:HMM:TIGR03571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class oxidoreductase"
                     /protein_id="HEY8522515.1"
                     /translation="MFKPKHLTLGVLFAIEAYEGAIPKMERQVELAQRAEELEFSGLW
                     FRDVPLYDPNFGDVGQIYDPWTYLGYIAGQTKNIALGTAAIIFPLRHPIDLAKGAASI
                     DQLSNGRLILGIAAGDRPIEYPAYGRDFGQRDMLFRESVYDFHRLLSESFPRYDSIFG
                     SLIGEGDLLPKPTSKKLPLFVTGYSRQTIDWIAKNSDGWLMYPRDILLQQHILTNWKN
                     GVRRTGNDFKPFAQSLYIDLTKDPDTNPNRIHLGYRLGRNKLIKHLNDLKDIGVNHVF
                     FNLKYSKRPADDVLEELGKYVIPYFPPLDIQ"
     gene            complement(1388..>1684)
                     /locus_tag="VIL14_02025"
     CDS             complement(1388..>1684)
                     /locus_tag="VIL14_02025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522516.1"
                     /translation="LASPMDGSKSHIHQITNFKLENDSRKAIVQLTPDNSLSVNGTAD
                     IKINGQTIWKSAGISISISKGSTIAIDLDDEDTSNHFGEQQVYGIVTKLIDLSN"
BASE COUNT          578 a          241 c          257 g          608 t
ORIGIN      
        1 tttaaattta atacatgaat ttatggataa aaagaaatat gttttagtaa gaataacaat
       61 gtaagacatc tcttttataa ctttttaatt attataatta ttataataag agtgtctttt
      121 tttaataaag cttacaaatt aatgtttaaa ccaaaacatc ttactttggg agtcttattt
      181 gctattgagg cttatgaagg agcgattcca aaaatggaaa gacaggtgga attagctcaa
      241 cgggctgaag aattagaatt ttcaggatta tggtttcgcg atgttccttt atatgatccc
      301 aattttggag atgtaggaca gatatatgat ccatggactt acctgggata tattgctgga
      361 caaacaaaaa atattgcatt ggggactgca gctattattt ttccgttaag acatccaata
      421 gacttggcaa aaggagcagc ttcaattgat caattaagca atggtcgact aatattggga
      481 atagcagctg gggatagacc tattgagtat cctgcatatg gacgagattt tgggcaacga
      541 gatatgctct ttagagaatc tgtttatgat tttcatcgtt tgctttctga aagttttccc
      601 agatatgatt ccatatttgg atcgttgatt ggtgaaggtg atcttttacc aaaacctaca
      661 tctaaaaaat taccattatt tgttacagga tatagtagac aaactattga ttggatagct
      721 aaaaattcag atggatggtt gatgtatcca agagatatcc ttttacagca acatattcta
      781 actaattgga aaaacggagt tagaagaact ggaaatgatt ttaaaccctt tgctcagtct
      841 ttatatatag acttgactaa agatcctgat acaaatccta atcgcattca tttaggatat
      901 cgcttgggaa gaaacaaatt gattaaacat ttgaatgacc tcaaagatat tggagtgaat
      961 catgtctttt ttaatcttaa atatagtaaa cgtcccgcag acgatgtctt ggaagaatta
     1021 ggaaaatatg taattcctta ttttcctcca ctagatatac aataataatc tacaacatat
     1081 taacttaaca ataatttttt acaatttcca tatactttca tcaaattgtc atgactactt
     1141 atattatatg taatgatatg taaatagttg ttcaattata tttcccttag aatagacata
     1201 ttatatatat tatatttaac atatctattt gatttagata tgtctaatat agtattggtt
     1261 agataaacaa tattatcctt taaaattact ttaactatca aaacattttc tattcattca
     1321 aaaacaatac aaatagtatt tcaaaaactt tccggaatct tctaaattat atttatattt
     1381 actgaaacta attactgaga tctattaatt tggttactat accataaacc tgttgctctc
     1441 caaaatgatt acttgtatct tcgtcatcta gatcaattgc aattgtactt cctttagaaa
     1501 tggaaattga aataccagca ctcttccata tagtttgacc attaattttt atgtcagcag
     1561 ttccatttac tgataagcta ttatcgggtg ttagttgaac tattgctttt ctactatcat
     1621 tttcaagttt aaaattagtt atttgatgaa tatgactctt tgagccatcc ataggagatg
     1681 caag
//
LOCUS       DATCMF010000159         2751 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_549792, whole genome shotgun sequence.
ACCESSION   DATCMF010000159 DATCMF010000000
VERSION     DATCMF010000159.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2751)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2751)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2751
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_549792"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..659
                     /locus_tag="VIL14_02030"
     CDS             <1..659
                     /locus_tag="VIL14_02030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522517.1"
                     /translation="DCVLTHHPIGKSAVSFHKVFDRHVEYMIEKGIKKKLAISLVKDL
                     KYKAYLKSHSLIYNDVISTAKSLKMPLLNIHQPLDEYMRKIILFKLYKSKLKSVSDLV
                     KAIEEITEFKKALTRVIICNGKSNNEIGKWVLVIAAGSNGGYDIARTYYENNVSTVIY
                     LHIDYNELLKVKKDKRCQNLVILGHLAGDSIGMNKICKELEKREIVVIKRGLIDDNDF
                     "
     gene            721..822
                     /locus_tag="VIL14_02035"
     tRNA            join(721..759,788..822)
                     /locus_tag="VIL14_02035"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:756..758,aa:His,seq:gtg)
     gene            974..1225
                     /locus_tag="VIL14_02040"
     CDS             974..1225
                     /locus_tag="VIL14_02040"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit H"
                     /protein_id="HEY8522518.1"
                     /translation="MSADKKIVKVKNHIYQPKHEILPKNEAEEILKKFNVRTNQLPYI
                     MSSDKGLEDLDIRPGDIIKITRKSPTAGESVYYRYVVQG"
     gene            1241..>2751
                     /locus_tag="VIL14_02045"
     CDS             1241..>2751
                     /locus_tag="VIL14_02045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit B''"
                     /protein_id="HEY8522519.1"
                     /translation="MVSNFVDIWPIINDILRREGIARQHLNSYNEFMESGLQSIIDEV
                     NEVEIETAEFPYKLKLGKIKLQRPRIMELDGSITHVAPVEARLRNLTYASPIMLECSI
                     VEDGRIIESRFIHVGDMPVMVKSNVCILHNLPESKLIELGEDPRDPGGYFVINGSERV
                     IVGLEDLSYNKIIVDAEETAGTLTYKAKVYSSIVGYRAKLELIMKPDGSIVAKIPGSP
                     VDIPLVTLIRALGLESDRDIANAVSFKEKIQDELEPSFEKVGEIISSRDAIVYISKRI
                     APGMLEEFQIKRAETLLDWGLLPHLGKNPENRGEKALFLGEAASKLVELKLGWVDNDD
                     KDHYGNKVIKFAGQMLADLFRTAFRNLIRDMKYQLERSGQKRGINAVAAAVRPGIISD
                     KLNNAIATGNWGRGRVGVTQLLDRTNYMSTISHLRRIQSPLSRSQPNFEARDLHTTHF
                     GRICPAETPEGSNCGLVKNLALSAIISVSVQSSEIIEKLYELRVQHIDDADES"
BASE COUNT         1010 a          385 c          524 g          832 t
ORIGIN      
        1 gtgattgtgt attaacacat catcccatag gaaagtcagc ggtttcattt cacaaagttt
       61 ttgatagaca tgtagaatat atgatagaaa aaggaatcaa aaaaaaatta gcaatttcat
      121 tggttaaaga tttaaaatat aaggcttatt taaaatctca ttctttaatc tacaatgatg
      181 tgattagcac cgcaaaaagt ctcaaaatgc cgttattgaa tatacatcag ccccttgatg
      241 aatatatgag aaaaattatt ttattcaaac tttataaatc taaattaaaa tctgtctctg
      301 atttagtaaa agcaatagaa gagataacag aattcaaaaa agctttaaca cgagttataa
      361 tttgcaatgg aaagtcaaat aatgaaatag gtaagtgggt cctagttata gcagcaggat
      421 caaatggcgg atatgatatt gctcgcacat attatgaaaa taatgtttcc accgtaatct
      481 atcttcatat tgattataat gaacttttaa aagtaaaaaa agataaaaga tgtcagaatc
      541 ttgttatcct tggacatttg gcaggagatt caataggaat gaacaaaatt tgtaaagaac
      601 tagaaaaaag agaaatagta gtgattaaac gtggtttaat tgatgataat gatttttaga
      661 ttttattttc atacattcct ctaaagaata aatattacag aatttcataa aatattagtg
      721 gccttcgtag tatagcctgg ttagtatagg cggctgtggt cttttattat aaccaacaaa
      781 gatagaaacc gcttgaggag ggttcaaatc cctccgaagg cctaaataat aaagtcaaat
      841 atgttgttaa ttcaaatatt gtaataaact aaatatacct cttactccga gaatgttact
      901 gattttgtat tgcgagacgc tattttatct agatttattt atctaatgat aaatataaag
      961 gaggtttgtt aatttgtcag cagataaaaa aattgtcaaa gtaaagaatc acatctatca
     1021 acctaaacac gaaattcttc caaaaaacga agctgaagaa atccttaaaa aatttaacgt
     1081 aagaactaat caactaccat atattatgtc aagcgataaa ggattagaag acttagatat
     1141 tcgcccagga gatataatta aaattacacg aaaaagtcca actgcaggtg aaagtgtata
     1201 ttacagatat gtagtacaag gctaaggaga tacaagttat ttggttagta attttgttga
     1261 tatatggcct attattaatg atattttaag acgagaaggt attgcacgac agcacttgaa
     1321 ttcttacaat gagtttatgg aatcgggatt acaaagtata atagatgagg taaatgaagt
     1381 agaaatagaa acagctgaat ttccatataa gttgaagtta ggaaaaataa aacttcaacg
     1441 tccacgaata atggagctag atgggtctat tactcatgtt gctcctgtag aggctagact
     1501 acgtaatctt acatatgctt cgccaataat gcttgaatgc agtattgtcg aagatggccg
     1561 tattatagaa tctagattca ttcatgtggg tgatatgcct gtgatggtaa aatctaatgt
     1621 ttgtatcctt cataatcttc cagaatctaa attaatcgaa ttaggcgaag accctcggga
     1681 tcctggagga tattttgtta taaatggatc agaaagagtc atagtaggat tagaagattt
     1741 atcatataat aaaattattg ttgatgcaga agaaactgct ggaacgctaa cctacaaagc
     1801 aaaagtttat tcttctatag ttggatatcg ggccaaatta gaactaatta tgaaacctga
     1861 tggttcaata gtagcgaaga ttccgggctc gccagttgat attcccttag taacattgat
     1921 tcgtgctttg ggattagaat ctgatagaga tatagccaat gctgtttcct ttaaagaaaa
     1981 aatacaggat gaattagagc cttcatttga aaaagtagga gaaattattt caagcagaga
     2041 cgccattgtt tatatcagta aaagaattgc tccaggtatg ctcgaagaat ttcaaataaa
     2101 acgagctgaa acgttactag attggggatt gttacctcat ttgggaaaga atccagaaaa
     2161 ccgtggtgaa aaagcgcttt tccttgggga agctgctagt aagttagtgg aacttaaact
     2221 tggatgggta gataatgatg ataaagatca ttacggcaat aaggttataa aatttgccgg
     2281 acaaatgctc gcagatcttt ttaggactgc atttagaaat ttgataagag atatgaaata
     2341 tcaacttgaa cgctctggac agaaaagagg aattaacgca gtcgcagcag cagttaggcc
     2401 aggtatcata tctgataaat tgaataatgc aatagctact ggtaattggg gtagaggtag
     2461 agtaggagtg acacaattgc ttgatagaac taattatatg tctactatta gtcatttgcg
     2521 tagaatacaa tctcctctta gtagaagtca acctaatttt gaagcgagag atttacatac
     2581 tacccatttc ggcagaatct gcccagcaga gactcctgaa ggttcaaatt gtggactcgt
     2641 aaaaaatcta gctctctctg caataatctc agtaagcgtc cagtcctcag aaattataga
     2701 aaagctatat gaattgaggg ttcaacatat tgatgatgca gatgaaagtt t
//
LOCUS       DATCMF010000160         1838 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_33597, whole genome shotgun sequence.
ACCESSION   DATCMF010000160 DATCMF010000000
VERSION     DATCMF010000160.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1838)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1838)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1838
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33597"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..293)
                     /locus_tag="VIL14_02050"
     CDS             complement(<1..293)
                     /locus_tag="VIL14_02050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobyric acid synthase"
                     /protein_id="HEY8522520.1"
                     /translation="MKSKLSKLLMIQGTSSGSGKSTLVTAFCRIFSDKGYQVSPFKAQ
                     NMSSNAYVIGKTSCEISQAQALQAFASRKQPDVRMNPILLKPIGNYRSKVILNG"
     gene            complement(290..1309)
                     /locus_tag="VIL14_02055"
     CDS             complement(290..1309)
                     /locus_tag="VIL14_02055"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004400 - histidinol-phosphate
                     transaminase activity [Evidence IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HEY8522521.1"
                     /translation="MVKVDFSSNVNPLGISKFVLEAIQKNAFSLSSKYPDTECRALKK
                     SLSEYLDNDLDGEWICVGNGATELIHSFAQTFVRNKVIIPFPTFCEYESASKRAGAGI
                     LFIPFNDLTLDPDAFIEKGKKSDVIFICNPNNPTGLMCSTKLIQKIVESVDSSTKVLV
                     DESFIELSDYNPYNHTMINKIKEFENLVILRSMTKSFGLAGLRIGYIICHPKLIKRLS
                     NYQIPWNVNGLAQAAGIAALTDLNHLKQSRVLIQKERRFMQEMIIRKMNAFIPYRSDV
                     NYFLIYLENKNSTKVRDLILAEKGVLVRDCSTFVGMGVKYVRVAVKTHKENLVLLDAL
                     ESIDN"
     gene            1527..>1838
                     /locus_tag="VIL14_02060"
     CDS             1527..>1838
                     /locus_tag="VIL14_02060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HEY8522522.1"
                     /translation="MLKAALVGATGAVGQEFVLALNSHPWFELTQIASSKRSAGKKYI
                     DALRDKDSQVLKWHSKEQIPEYIRDTIVSEVENIDSQKFDLIFTALESDDAQIIEPKF
                     AK"
BASE COUNT          566 a          363 c          300 g          609 t
ORIGIN      
        1 ccgtttaaaa taaccttgct tcgataattt ccaataggct ttagcaaaat aggattcatt
       61 cttacatctg gttgttttct tgaagcaaat gcttgaaggg cttgtgcttg agaaatttcg
      121 catgatgttt tgccgataac atatgcattc gaagacatgt tttgagcctt aaatggggat
      181 acttgatagc ctttgtcaga aaaaattcta caaaatgcag ttacaagagt gctcttgcct
      241 gagcctgaag aagttccctg aatcatcaac aattttgata attttgactt caattatcaa
      301 ttgattccag agcatcgagt agcaccaaat tttccttatg agttttaaca gcaacccgaa
      361 catattttac tcccatgccc acaaatgtac tacagtctct aactagtact cccttttctg
      421 ctaaaatcaa gtccctaacc tttgtggagt ttttattttc gagataaatt aagaagtaat
      481 ttacatcaga tctataaggg ataaatgcat tcatttttct gattatcatt tcctgcataa
      541 accttcgctc cttctggatg agtacccttg attgtttaag gtggttcaaa tctgtcaaag
      601 cggctattcc cgctgcttgt gccaatccat ttacattcca tggaatctgg taattagata
      661 ggcgtttaat gagctttgga tggcatatta tatagccaat ccttagccca gccaaaccaa
      721 aagactttgt cattgatcgt aaaattacca agttttcgaa ttcttttatt ttgtttatca
      781 tagtatgatt atacgggtta tagtcagaca gttcaatgaa agactcatcc actagtactt
      841 ttgtagaact atcgacagat tcgactatct tctgtattaa ttttgtgcta cacatgaggc
      901 cagtaggatt atttggatta catatgaata taacatcaga cttcttccct ttctcgataa
      961 aagcatcggg atctaaggtt aaatcattaa atggaataaa caaaatacct gcgccagctc
     1021 ttttcgatgc actctcatat tcacaaaaag ttggaaaagg gattatgacc ttattcctta
     1081 caaaagtctg agcaaaactg tgaattaatt cagttgctcc atttcctaca cagatccatt
     1141 caccgtccaa gtcattgtct aaatattctg ataaactctt ctttaaagct ctgcattctg
     1201 tatcaggata tttagaagat aatgaaaacg catttttttg tattgcctct agaacaaact
     1261 tagaaattcc aagtggatta acgttagaac taaaatcgac cttaaccaaa ctaggattta
     1321 ctgaatatat tccaccatgt gagcaaatat ttttaatcct gcttttccac ctccactact
     1381 tcctatatta ttacaaactt cttgacttac cataatttta agtgcagaca aggtcatatt
     1441 tagagaatat cttattagaa tacgcttttc tcgtcgtttc taagttctct gaaacggtta
     1501 ttagttactt gagaattatc ctcactatgt taaaagctgc gctcgtcggg gctacaggtg
     1561 ctgtcggaca agaatttgta cttgccctaa attcacatcc ctggttcgaa ttaacccaaa
     1621 tagcttcttc taagaggtcc gcaggcaaaa aatatatcga tgctcttcgt gataaagact
     1681 cgcaagttct aaaatggcac agcaaggaac agattccaga atatatacga gacactattg
     1741 ttagcgaggt tgaaaatatt gactcccaga aatttgacct aatttttact gcccttgagt
     1801 cagacgatgc tcagattatt gaaccaaagt ttgcaaag
//
LOCUS       DATCMF010000161         3203 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_33821, whole genome shotgun sequence.
ACCESSION   DATCMF010000161 DATCMF010000000
VERSION     DATCMF010000161.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3203)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3203)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3203
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33821"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..633
                     /locus_tag="VIL14_02065"
     CDS             <1..633
                     /locus_tag="VIL14_02065"
                     /inference="COORDINATES: protein motif:HMM:NF013212.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HEY8522523.1"
                     /translation="NMINNDNSVEKDEKQTNYNNDSLKQELEKDEKQTNDNNDSLKQE
                     LEKTKIELEETKKKAETNLNKLKYMMADFDNYRKQIEKQMVSTIESNKSNLLSLFLTV
                     HDDYQRAFDIIKKNKDLDEVFLNGLEGILKNLDNILKSEGVTPIETIGKILDPSKHDV
                     ISFSYNDDLPENTITNEIRIGYMLNDKVLRPSLVEISKKNIMNNNIDESN"
     gene            654..2573
                     /gene="dnaK"
                     /locus_tag="VIL14_02070"
     CDS             654..2573
                     /gene="dnaK"
                     /locus_tag="VIL14_02070"
                     /inference="COORDINATES: protein motif:HMM:NF001413.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA];
                     GO_process: GO:0006950 - response to stress [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HEY8522524.1"
                     /translation="MGKIIGIDLGTSNSAAAAMIGGKPTIIQAAEGASVGGKAFPSVV
                     AFTNTGELLVGEPARRQMISNPEGTVLAAKRKMGTDFKFNVRGKSYTPQQISSFILQK
                     IKKDAEAFLGDTVDRAVITVPAYFNDNQRQATKDAGDIAGLQVVRIINEPTAASLAYG
                     LDKIQKDLKIMVFDFGGGTLDVTIMEMGGGVFQVKSTSGDTQLGGTDMDNAIIEYILQ
                     EFKQQTGLDVRNDKAAMMRIREAAEKSKIELSNLVSTEINLPFLAYDPSTGPKNLIIN
                     LTRSKLEELLRPIVEKCKNPMLQAIQDAKLTPADIDKIIMVGGPTRMPIVRQFVATIM
                     GKEPERGVDPMEAVALGAAIQAAIIAGDVSSDILLVDVTPLTLGLEVLGGLKEALIER
                     NTTIPTKKSKVFTTAADYQSAVTIHVVQGERPMAADCVSLGTFNLTGIPPAPRGVPQI
                     EVTFDIDANGILNVTAKDLGTSKEAKITITATTKLSKDEIEKLKKESEQYSEADKKKK
                     EEAEIRNEAENLVYSAEKLVSQDFKDKIKPEQTEKINKAVQELKDVIASNNIENLNDK
                     IKETKNLLAEISTEIYRTVGAAANTAAGGGGQGTTTTTEDFTNQSETNRGDNSNPAAD
                     TSNSSSTDKSTSTGS"
     gene            2635..>3203
                     /locus_tag="VIL14_02075"
     CDS             2635..>3203
                     /locus_tag="VIL14_02075"
                     /inference="COORDINATES: protein motif:HMM:NF012451.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ domain-containing protein"
                     /protein_id="HEY8522525.1"
                     /translation="MANKRDYYEILEIQKNASKDEIKNTYRKLALKYHPDRNKSPGAE
                     EKFKEISEAYAVLSDDEKRKRYDTYGHVGSEDVFRGSEANFEEIFRDMGFGGFAKTIF
                     EQMFGGRGGAGGFEGSTNPFGGFSFNIGGNRRKGRDILYDMELSLEDVVRGKKDEIEL
                     PKFESCNDCGGTGAAQGTKPRTCSTCNGQG"
BASE COUNT         1273 a          445 c          612 g          873 t
ORIGIN      
        1 aatatgatta ataatgataa ttctgtggaa aaagatgaaa aacaaaccaa ttataataat
       61 gattccttaa aacaagaatt ggaaaaagat gaaaaacaaa ccaatgataa taatgattcc
      121 ttaaaacaag aattggaaaa aacaaaaatt gagttagaag aaacaaaaaa gaaagcagaa
      181 actaatctta ataaattaaa gtatatgatg gctgattttg acaattatag aaaacagata
      241 gaaaaacaaa tggtttctac tatagaatca aataaatcta atcttctttc tctattttta
      301 actgttcatg atgattatca gagagcattc gatataataa aaaagaataa agatcttgat
      361 gaggtttttc ttaatggatt agaaggtatt ttaaaaaatt tagataacat tttgaaatct
      421 gaaggtgtaa ctccaattga aacaatagga aagattttag atccaagcaa acatgatgtt
      481 attagcttct catacaatga tgatcttcca gaaaatacta ttacaaatga aatacgtatc
      541 ggttatatgc ttaatgacaa agttctgaga cccagtctag ttgaaatatc caaaaaaaat
      601 ataatgaaca ataatataga tgaatcaaac taaactatag gtgattatta aatatgggaa
      661 aaattattgg tatcgatcta ggaactagta actctgcagc agcagcaatg ataggcggta
      721 aacctacaat aatacaggca gcggaaggtg cttcagttgg tggaaaagct tttccatctg
      781 tagtagcctt tacaaatact ggtgagttgt tggttggaga accagctaga agacaaatga
      841 tatccaatcc tgaaggaact gttcttgccg ctaaacgaaa gatgggtaca gattttaaat
      901 ttaatgtaag aggaaagagt tatactcctc agcaaatttc ttcatttatt ttacaaaaga
      961 taaaaaagga tgctgaagca tttttgggag atacagtaga tagagctgtt attactgtac
     1021 cagcatattt caatgataat cagaggcaag caacaaaaga tgcaggtgat atagcaggat
     1081 tacaggtagt aaggattatc aatgagccta cggccgcttc acttgcttac ggattagata
     1141 aaattcaaaa agatttgaaa attatggttt ttgattttgg gggaggaaca ttagatgtaa
     1201 ctattatgga aatgggtgga ggagtatttc aagttaaaag tacttcagga gatactcaac
     1261 ttggaggaac cgatatggat aatgctatta ttgaatatat tttacaagaa ttcaaacaac
     1321 aaacaggatt agacgtaaga aacgataaag ctgctatgat gagaataaga gaagcagcag
     1381 aaaaatcaaa aatagaatta tctaatctcg tatcaactga aataaatctt ccatttttag
     1441 cttatgatcc ttctactgga ccaaaaaatc tcataattaa tctaacacgt tcaaaacttg
     1501 aagaactctt aagaccaatt gttgaaaaat gtaagaatcc tatgctacaa gcaatccaag
     1561 atgccaaact tactcctgca gatattgata aaattattat ggttggagga ccaactagaa
     1621 tgcctatagt tagacaattt gttgctacaa taatgggcaa agagcctgaa agaggagttg
     1681 atccaatgga agcagtcgct ctgggtgctg caatacaagc agctattatt gcaggagatg
     1741 tttcatcaga tattttactt gtagatgtta ctccattaac tttagggctt gaagttttag
     1801 gaggccttaa agaggcgtta atagaaagaa atacaactat tcctaccaaa aaaagtaagg
     1861 tctttacaac tgcggcagac tatcaatctg cagttaccat tcatgtagta cagggagaaa
     1921 gacctatggc tgcagattgt gtttcattag gaacttttaa ccttaccggg attccacctg
     1981 ctcctagagg agttcctcaa atcgaagtaa catttgatat tgatgcaaat ggaattctaa
     2041 acgttactgc caaggactta ggtacttcta aagaagcaaa aataactatt acagcaacca
     2101 caaaattatc taaagatgaa atagaaaaac ttaagaaaga atcagaacag tattctgaag
     2161 cagataagaa aaagaaagaa gaggcagaaa ttagaaatga ggctgaaaat cttgtctatt
     2221 cagcagaaaa attagttagc caagatttca aagacaaaat taaacctgaa caaacagaaa
     2281 agataaacaa ggcagtacaa gaattaaaag atgtcattgc tagtaataat attgaaaacc
     2341 tcaatgacaa aattaaggaa acaaagaatt tactcgctga aataagtaca gaaatttata
     2401 gaacagttgg agcagcagca aatacagcag ccggcggtgg tggacaagga acaacaacta
     2461 ctactgagga tttcacaaat caaagtgaaa ctaacagagg agacaattca aatcctgctg
     2521 ctgatacatc taatagtagt tctacagata aatctacatc gactggatcc taacatgtca
     2581 aaagataaaa ataatccatt ttttatttaa tattaattca ttacgggatt atttatggct
     2641 aacaaacgag attattatga aattttagag atacaaaaga atgctagtaa agatgaaatt
     2701 aaaaatacat acagaaaact agcattaaaa taccatcctg atcggaataa atctccaggt
     2761 gccgaagaaa aattcaaaga aatttctgag gcttatgcag ttctttccga tgatgaaaaa
     2821 agaaaaagat atgatactta tggacatgta ggatcagagg atgtatttag aggatctgaa
     2881 gcaaactttg aagagatctt tagagatatg ggttttggtg gttttgcaaa aactattttt
     2941 gaacaaatgt ttggtggtag aggaggagca ggaggattcg aaggatctac taatccattt
     3001 ggcggattta gtttcaacat aggaggtaat agaagaaaag gtagagatat tctatatgat
     3061 atggaactct cattagaaga cgttgtaaga ggaaaaaaag atgagattga attacctaag
     3121 tttgaaagtt gtaacgattg tggtggaaca ggagctgccc agggaactaa accccgtaca
     3181 tgcagtactt gtaatggtca agg
//
LOCUS       DATCMF010000162         3385 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_33860, whole genome shotgun sequence.
ACCESSION   DATCMF010000162 DATCMF010000000
VERSION     DATCMF010000162.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3385)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3385)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3385
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33860"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            35..1306
                     /locus_tag="VIL14_02080"
     CDS             35..1306
                     /locus_tag="VIL14_02080"
                     /EC_number="3.5.1.5"
                     /inference="COORDINATES: protein motif:HMM:NF009686.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009039 - urease activity [Evidence IEA];
                     GO_process: GO:0043419 - urea catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease subunit alpha"
                     /protein_id="HEY8522526.1"
                     /translation="MSNGNTTMIGGGTGPADGTAATTCTPGVYNISRMMEAVEDIPVN
                     WGFLGKGNDSHPSLATQLEQIEAGACGLKDHEDWGTTNAVLDASLRAVDATDTQLAIH
                     TDSINECGYVEDTINAIDGRTVHTYHTEGAGGGHAPDIMKIAGEQFALPSSTNPTRPY
                     TVNTVDEHLDMLMFCHHLNPSVAEDVAFAESRIRAETIAAEDVLHDEGVLSMYSSDSQ
                     AMGRIGEVVIRAWQTADKMKKMKGKLAEETGDNDNIRAKRYIAKTTINCAITHGAADA
                     LGSLEVGKYADLVMYPTAFFGAKPKMIFKGGFIAWSIMGDPNASIPTPEPVYYRPMFG
                     ALGKAVKRTSLTFTSKAAVKLDVGEKLGLEKTLFPVHNCRDIGKNDMVWNNKTPEISI
                     DPETYEVKLDGKIATVDPAKELSLAQRYFMA"
     gene            1383..2939
                     /locus_tag="VIL14_02085"
     CDS             1383..2939
                     /locus_tag="VIL14_02085"
                     /inference="COORDINATES: protein motif:HMM:NF012346.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TCP-1/cpn60 chaperonin family protein"
                     /protein_id="HEY8522527.1"
                     /translation="MSSLNHGVWRPIAENVEFNALESNSQAVMAVADTVRTTLGPKGL
                     DKLLIDQAMNRHVSNDGVTILLSLKAIHPVARMIVEIAERQEQLVGDGTTTAVVMASE
                     MIKEGKRLIKELGVHPTKVVEGIENGVKHACKILEKDAKKISLEDKELEQIIKTSLSS
                     KLDGITLSELVINSIRTVGNNSLYNNLFDFDKSIKVIRKINVSDTVFNGIVLERKRMD
                     QEMPMRILKPKIMIVKLDLKPVKESWLKENNRYEEILNMENDRLLKSKKIVNEIMVTG
                     ANTLLIASPEVDEVIENLLVAKNIFATRISSDEIEFLSRYTGAKPVRMIDDLKNNGIL
                     GDADSIYEDEDTGLIYIENGSGKNIVTIIVSGTTKETSLERWRSVIDGVNASEAALNR
                     GIVAGGGAAEIHVIEKLKSLRLKGLEQVGLDVVASALESIMRQILTNAGFNGLEKVMA
                     AKASKPNIGIDIDSGELVNMFEKGILDPLLVKLMALEAAGEISKSVLRIDRNLAAEDL
                     SQQSVSEIKR"
     gene            2950..3321
                     /locus_tag="VIL14_02090"
     CDS             2950..3321
                     /locus_tag="VIL14_02090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522528.1"
                     /translation="MQIRHCVEENNVDENLIIKKPQEIRHIIAQEGKIKQMSGFIDPR
                     SHLNLDYTLHRVTKCVIAKKFEIGSELLFASSGFIFAMVTKSHFEHYGYIDYTKNLTE
                     MIDKVNDLRNSKSIYTSNLKK"
BASE COUNT         1225 a          515 c          702 g          943 t
ORIGIN      
        1 tcatatgata tctccacaac aataagtaga tgcaattagt aatggcaata ctaccatgat
       61 cggtggaggt actggaccag cagatgggac agctgcaaca acttgtaccc ctggtgtata
      121 taatattagc agaatgatgg aagctgtaga agatatccct gtaaattggg gatttcttgg
      181 taaaggcaat gattctcacc cctcacttgc aacacaatta gaacaaatcg aagcgggagc
      241 atgtggacta aaagatcacg aggattgggg tactactaat gctgttctgg atgcgtctct
      301 tcgtgcagtg gatgcaaccg atacacagtt agcaattcat actgactcca ttaatgagtg
      361 tggatatgtt gaagatacaa taaatgcaat agatggaaga acagtgcata catatcatac
      421 ggagggagca ggtggaggtc atgcccctga tattatgaaa atagcaggag aacaatttgc
      481 tcttccttca tcgactaatc ctactagacc atacactgtt aacacagtcg atgagcattt
      541 ggatatgtta atgttctgcc atcacttaaa tccttcagta gctgaagatg ttgcctttgc
      601 ggaatctagg attagagcag aaacaattgc tgcggaagat gttttacatg atgaaggtgt
      661 attaagtatg tactcttctg atagccaagc tatgggtaga atcggtgaag tagttattcg
      721 tgcatggcag acagccgata aaatgaagaa gatgaaagga aaactagctg aagaaacagg
      781 agacaatgat aatatcagag caaaaaggta cattgcaaaa actactatca actgtgcaat
      841 tacacatgga gcggccgatg ctctaggttc tcttgaagtc ggcaagtatg cggatttggt
      901 aatgtatcca acagcattct ttggagcaaa gccaaaaatg atatttaaag gaggctttat
      961 cgcttggtcg ataatgggag accctaacgc atccatacca actccagaac ctgtttatta
     1021 tcgaccgatg ttcggggcat taggcaaagc agtaaaacga acatcactga cttttacatc
     1081 taaagcagca gtcaagcttg acgtaggtga aaaacttgga ttggagaaga cgctctttcc
     1141 tgtacataat tgcagagata ttggaaaaaa tgatatggtc tggaataaca agactcctga
     1201 aattagcatc gatcccgaga catatgaagt taaactcgat ggaaaaattg caactgtgga
     1261 tcctgcaaag gaactatcgt tagcacaaag atactttatg gcatagggat aaagaaaaaa
     1321 atatctcaat tttttttgtt ttttattatt tagatatata ctccttctaa agattatatc
     1381 ttatgtctag tcttaatcat ggagtttgga gaccaatagc tgaaaatgta gaatttaatg
     1441 ctctcgaatc aaattctcag gcagtaatgg cagttgcaga tacagtaagg accactttgg
     1501 ggccaaaagg tttggataaa ctcttaatag atcaagcgat gaataggcac gtctcaaatg
     1561 atggtgtaac cattcttctc tctttaaagg caattcatcc cgtagcacga atgatagtag
     1621 aaatagcaga aagacaagag caattagtag gtgatgggac cacaaccgcg gtagtgatgg
     1681 cctcagagat gataaaagaa ggtaagaggc ttattaaaga actgggagtt caccctacga
     1741 aagtagtaga aggtatagaa aatggcgtaa aacatgcctg taaaatttta gaaaaagatg
     1801 ccaaaaaaat atctcttgaa gataaagaat tggaacagat tataaaaacc tctttatctt
     1861 caaaattaga tggtattacc ttatcagaat tagtaattaa ctcgattaga acagtaggaa
     1921 ataattccct atataataat ttatttgatt ttgataaatc gattaaagta attagaaaaa
     1981 ttaacgtttc tgatactgtt ttcaatggga ttgttttgga aagaaaacgt atggatcaag
     2041 aaatgcctat gcgaatacta aaacctaaaa taatgatcgt aaaacttgat ctaaaacctg
     2101 taaaagaatc gtggttaaaa gaaaataatc gttatgaaga aattttgaat atggaaaatg
     2161 atcggttatt gaaatcgaaa aaaattgtaa atgaaattat ggttactggt gctaatactc
     2221 ttctaatagc ttctcccgag gtggatgaag ttatagagaa tctcttagtt gccaaaaata
     2281 tctttgcaac aagaatatct tctgatgaaa tagaattctt atctagatat actggtgcaa
     2341 aacctgtgcg gatgattgat gatcttaaga ataatggcat tctcggagat gctgactcta
     2401 tatacgaaga tgaagataca ggacttatct atatcgaaaa tggctcgggc aagaatatag
     2461 ttacaatcat tgtctctgga acaacaaagg aaacttctct tgaaagatgg aggtctgtta
     2521 tagatggtgt caatgcttct gaagctgcgt tgaatagagg aatagttgct ggtggaggag
     2581 cagcagaaat acatgtaatt gaaaagttaa agagtctacg attgaaggga ttagaacaag
     2641 tagggctgga cgttgtagca tctgcattgg aaagtataat gagacagatt ctcactaatg
     2701 cgggattcaa tggtttagaa aaagtaatgg cagctaaagc atcaaaacca aacattggaa
     2761 tagatattga ctcaggagag ctagtaaata tgtttgaaaa gggaatcctc gatcctctat
     2821 tggttaagtt aatggctctt gaggctgctg gagaaatttc aaaatcagtt ttaagaatag
     2881 atcgaaatct tgctgcagaa gatcttagtc agcaaagcgt atcggaaata aaaagataag
     2941 tgatgtaata tgcagatccg tcattgtgtt gaagaaaata atgtagatga aaacttgatt
     3001 atcaaaaaac ctcaagaaat tagacatata atagcccaag aaggtaaaat aaaacaaatg
     3061 tcaggattta ttgatcctag atctcatctt aatcttgact atactttaca tcgtgtaacc
     3121 aaatgcgtca tagcaaaaaa atttgagata ggatccgaat tgctttttgc cagttctgga
     3181 tttatctttg ctatggtaac taaatctcat tttgaacatt atggatacat agattacaca
     3241 aaaaacctta cagaaatgat agataaagtc aatgatttaa gaaactcaaa atccatttat
     3301 acaagcaatc ttaaaaaatg agatggagat aaatcaaaag taatatgata actgttaatc
     3361 aaattttagg taatatcaat caaaa
//
LOCUS       DATCMF010000163         1624 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_351951, whole genome shotgun sequence.
ACCESSION   DATCMF010000163 DATCMF010000000
VERSION     DATCMF010000163.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1624)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1624)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1624
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_351951"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(81..410)
                     /locus_tag="VIL14_02095"
     CDS             complement(81..410)
                     /locus_tag="VIL14_02095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522529.1"
                     /translation="MENLTTTTVFKIKQLVDNGSNITLSLSEDVELETVSQQQMILEA
                     VDRTVTDEEVKQQIKPLLEAILRSQPQTVIKTYPKTIIQITMPKRRYEMMGNPQVGET
                     LQIDIKK"
     gene            complement(525..833)
                     /locus_tag="VIL14_02100"
     CDS             complement(525..833)
                     /locus_tag="VIL14_02100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522530.1"
                     /translation="MTEKSGSMESSNDTIPFPTLTILYLPGEASEVVEEVSQKYYNMT
                     SEDCVGYFHDGVKREYKKITIWSQGIDSLWFNAIIARIKEVAKVDQVPIVSGGIMYSI
                     "
     gene            complement(921..>1624)
                     /locus_tag="VIL14_02105"
     CDS             complement(921..>1624)
                     /locus_tag="VIL14_02105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522531.1"
                     /translation="YEYHKRMIDLDKIGVEDAILEGPTKLCELNILGKGHSGIVLKVT
                     ACSKKTMALKIRRVDSRRKDSLTEVYNQKFANLEGIGPQIIDHTNDLILMELITGKGI
                     YDWLQDPTTFHLVTSTNIINIVTEILQQCYRLDILHLDHGELTRIDNHVMVSGNNQIS
                     LIDFESASTKRKPCNVTSASQALLLSGGSISKKICKFIDIKDPEFLLNCLKKYKKRKN
                     RQNFDDILSIVNGNR"
BASE COUNT          505 a          270 c          211 g          638 t
ORIGIN      
        1 aattacctct gaaattaaga ttaaaaggga ttatatacaa tatagtaaca tcatttcttc
       61 aactaatata cctactacca ttatttctta atgtctatct gcagagtctc cccaacttga
      121 ggatttccca tcatttcata tcttcttttg ggcatagtta tttgaatgat ggttttagga
      181 tatgttttga taacagtttg aggctgggat cttaaaattg cttccagcaa aggtttgatt
      241 tgttgtttta cttcctcatc tgttacagtt ctatccactg cttccaatat catttgttgt
      301 tgcgatactg tttctaattc aacatcttca cttaaagaaa gagtaatgtt tgaaccatta
      361 tctacaagct gtttaatttt gaatactgtt gttgttgtta aattttccac cttagtcttt
      421 ctaaatttta cagatatata attttattat gttattggat aacgaaataa tttagtttat
      481 agctaaatat aataataata actaaaggta ttttttttaa caggttatat agaatacatt
      541 attccaccag atacaatagg tacttggtcc accttggcaa cttcttttat tctagctatt
      601 atagcattaa accataaact atcaattccc tggctccaga ttgtaatctt tttatattcc
      661 cgttttactc catcatgaaa atatcccaca cagtcttctg aagtcatgtt ataatacttt
      721 tggctaactt cttctacaac ttctgaggct tctccaggca agtataaaat tgttaatgtc
      781 gggaagggaa tagtatcgtt agaagattcc atagaaccac ttttttcagt cattttgatt
      841 aacataaaac tatcctgtaa taagaaaatt tcgaaatata ctacttacta tttaagtaat
      901 tatacaatat ggttttggat ctatctattt ccattgacta tagagaggat atcatcaaaa
      961 ttttgtctat tttttctttt cttgtatttt tttaaacaat tcaataaaaa ttcaggatct
     1021 tttatgtcaa taaatttaca aatttttttt gaaattgagc caccactcaa aagtaaagct
     1081 tgactagcag atgtaacatt gcagggcttt cttttagtag atgcgctctc aaaatctatt
     1141 agtgatattt ggttattccc agaaaccatt acatgattat caattcgagt taattctcca
     1201 tgatctaaat ggagaatatc tagtctataa cattgttgta atatctcagt aactatattt
     1261 ataatatttg tgctggttac aaggtgaaaa gtagttgggt cttgaagcca atcataaatc
     1321 ccttttccag ttattaattc cattagtatc aaatcatttg tatgatcaat aatttgagga
     1381 cctattcctt ccaagttagc gaatttttga ttatagactt cagtcaaaga atcctttcgt
     1441 cgagaatcta ctcttcttat ttttaatgcc atagttttct tagaacatgc agttactttt
     1501 aacacgatac ctgaatgtcc ttttcccaaa atatttaatt cacataattt agtaggtcct
     1561 tctaatatag catcttcaac tcctattttg tctaaatcaa tcattctctt atgatattcg
     1621 tata
//
LOCUS       DATCMF010000164         2783 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_34024, whole genome shotgun sequence.
ACCESSION   DATCMF010000164 DATCMF010000000
VERSION     DATCMF010000164.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2783)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2783)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2783
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34024"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            195..2039
                     /locus_tag="VIL14_02110"
     CDS             195..2039
                     /locus_tag="VIL14_02110"
                     /inference="COORDINATES: protein motif:HMM:NF014763.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY8522532.1"
                     /translation="MDEGDFFSRKRKEIGIISVVAIIISSFSLFFYQQNITEQNIKDS
                     IFNQYKNRQIESTQIISERIESDLKLIMSLLQGIADSVPLQQGELYGDRIQKLMNEKF
                     DQINDITKVDGLFIADEDNIITYNIVSEGKRSFVNIDISFRDYIQETRNTLKPVFSDG
                     FKGIDNIFSIALTVPIVNSDSGKYIGTIGIQIPTEPFFAHSGNINNVNSQFLVAYDSK
                     QNYLATPRTQFIGKNFFDTDVQKFFNVTNIQNNYYRKIFSGELLGGSAVYDFGSGERL
                     NTGYPILLQEKPTYFIFVITPTTQIYSHINDILHTERVKGFSLIFGLSFAVLILILFL
                     IKWNNTLNIEVKKRTKELQESNRQLSLSNQEIAHANEELKVHDKMQKEFINIASHEIK
                     TPLQAILSASQLLQMYPERQKKFASAIQRNAIRLQRLSNDILDVAKIESRSLKLKKEL
                     LDLNELISNIIEDYKTIIVKDNQNVKLFFKSSHYALFVEADKERIAGVISNLLSNAIK
                     FTKKGEIFVSTEKEDNSNSPYALVTVKDTGEGIDPEILPKVFSKFITKSFEGLGLGMY
                     IAKNIVEAHKGKIWTGNNKNKNGNRGAIFYFTLPLSKVVETSNNNIDK"
     gene            2367..2558
                     /locus_tag="VIL14_02115"
     CDS             2367..2558
                     /locus_tag="VIL14_02115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522533.1"
                     /translation="MYPERYADVYNKTSQNITDNTINANRRINDDLVLGSTETFNNYE
                     SVQKHFNFVNKIEKSYYNH"
BASE COUNT         1139 a          348 c          390 g          906 t
ORIGIN      
        1 ctttgattag aggcttcaag agtttcagac ataacaaaac ttatatagta ctattaatca
       61 ctaaaaaaca aatttcttga aaacaaaaat taaacagaaa gatctgatat agttaatgtt
      121 tctaattaaa aagagattta atacataatc aatttgtatt ttattgataa atggtaagaa
      181 aggaagggat aataatggat gagggcgact tcttctctag aaagagaaaa gagattggta
      241 ttatttcagt agtcgcaata attatttctt catttagttt atttttttat caacagaata
      301 taacagaaca aaatattaaa gatagtatat ttaaccaata taaaaaccgt cagatagaat
      361 ctacacaaat tatttccgaa cgtattgaat ctgatctgaa gttgattatg tcactccttc
      421 agggaatcgc agattctgtt cctctacaac aaggtgaact atatggagat agaattcaaa
      481 agcttatgaa cgaaaaattt gatcaaatta atgatattac caaagttgat gggctgttta
      541 ttgctgatga agataatata ataacatata atatagtatc tgaagggaaa agaagttttg
      601 ttaatataga tatttcattt agagattata tacaagagac aagaaatact ctaaaaccag
      661 ttttttcaga tggatttaag ggaattgata atatatttag tattgcatta actgttccaa
      721 tagtaaatag tgatagtgga aaatatatag gaacaatcgg gatacaaata cctactgagc
      781 cattttttgc acattctgga aatattaaca atgttaattc acagttttta gtagcgtatg
      841 atagtaaaca aaattatctt gctactccta ggacgcaatt cattggaaag aatttttttg
      901 atactgatgt ccaaaaattt tttaatgtga caaatattca gaataattat tatcgtaaaa
      961 tcttttctgg tgaattatta ggaggatctg cagtatatga ttttggaagt ggtgagagac
     1021 taaatacggg atatccaatt ttgttgcaag aaaaacctac atattttata ttcgtcataa
     1081 cacctactac acaaatatat tcccatatca atgatattct tcatacggaa agagtaaaag
     1141 gtttttcatt gatttttggt ctttcatttg cagttctgat tttaatccta tttcttataa
     1201 agtggaacaa taccttaaat attgaagtaa aaaaaagaac aaaagaatta caagaatcaa
     1261 atagacaact ttcattatca aatcaggaaa ttgcacacgc caatgaagaa ttaaaagttc
     1321 atgataaaat gcaaaaggaa ttcattaata tagcaagcca tgagataaag acgccccttc
     1381 aagctattct ttcagcttcc caactattac aaatgtatcc agaaagacaa aagaaattcg
     1441 catcagcgat acaaagaaat gcgattaggc tccaaagact ttctaatgat atattagacg
     1501 ttgctaaaat tgaaagccga tcattaaaat taaaaaagga attattagat ctaaatgaat
     1561 taatatcgaa tattatagag gattataaga ctattattgt aaaagataat caaaatgtca
     1621 aattattttt taaatcctcc cattatgctt tattcgtaga agccgataaa gaaagaattg
     1681 ctggagtaat ttctaacctt ctgagtaacg ctattaaatt taccaaaaaa ggcgaaatat
     1741 ttgtttctac tgagaaagaa gataatagta atagccccta tgcattagtg actgtaaagg
     1801 acactggtga gggaatagat ccagaaatat tacctaaagt attttcaaaa tttattacaa
     1861 aatcttttga agggttaggt ttagggatgt atatcgctaa aaatattgtg gaagctcata
     1921 aaggaaagat atggactggg aataataaga ataaaaatgg taatcgtgga gctatatttt
     1981 attttacttt accactaagc aaagtagtag aaacatcaaa taacaatata gataaataaa
     2041 aaagaaatta ttaatgttta tataacataa gcggaaatat agaaatctgc ttatattcta
     2101 tatactattg gtttagcaaa atactacatc aaatatttca aacacaacaa atagggtcaa
     2161 tgacaatttc aatgcatatc aaaaaacaaa taatgaaatt attgagaaag gtattgatac
     2221 tactaacaaa tatgaacaag aaaccattaa cacaattcaa tcaatctcaa acaactctat
     2281 agaattacaa taaaaattct taatacttat caatcagcat tctcaagatt ttaaatgata
     2341 catctaaatc atattggaat aattatatgt atccagaaag atatgctgat gtatataata
     2401 aaaccagtca aaatattaca gataatacaa tcaatgctaa tagaagaata aatgatgatt
     2461 tagtattagg atcaacagaa acttttaaca actatgaatc agttcaaaaa cactttaact
     2521 ttgtaaataa gatagaaaaa tcttattaca atcactaatt ttttattatt tgtaaataac
     2581 tttgtttcct aatgttaatg cgtaaataat aataataata ataataatat tcatatcact
     2641 catgtattct ttatttttga aatgaatatt ggattgtttc ttaactatat aatataaaat
     2701 atataaaaat ataatttcaa atcgttttaa taatatcata tatttatgaa atgtttatct
     2761 ttgaagcaac catatgcaga ctt
//
LOCUS       DATCMF010000165         1530 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_164196, whole genome shotgun sequence.
ACCESSION   DATCMF010000165 DATCMF010000000
VERSION     DATCMF010000165.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1530)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1530)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1530
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_164196"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1304
                     /locus_tag="VIL14_02120"
     CDS             <1..1304
                     /locus_tag="VIL14_02120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522534.1"
                     /translation="EEIIFALGIPQMENPIPAGIIETTNGLEVPITLDVTYLAGADTA
                     HVNASGISGNRKSSYILFLLQSSYQTLKRMNQNVALIIFNTKEQDLLYLDQKEKFIKK
                     RTERLFDVLDLEIEPFENVTYFLPRGKDGKPNSIHIPKNYKTYSYELEDVYDRLELLF
                     SEPYDLHHDFSSIINYISEYWPLKSNIGKNINTWSDLIEFKEYPEAIVSKKSSLLFFL
                     GRLQRFRKSSMFIDKKKTSTYLGNEIKKIKAGEVFVIDVATISSFEEQAFVVGDVMKS
                     IDEMYSARYYNLKDENNNNTNTEKDQSNVQKNQKLHYILVFIDEINRYIPKSQRGIMN
                     SVSEQIMRTVVAGRTRGTILFSAQQFKSATDFRLQENTDLHITAKLGLSELSTEPYSM
                     LDESTKMNIVRLNKGELVMIHSAFRHPIKIGFPKATFKKPK"
BASE COUNT          614 a          197 c          241 g          478 t
ORIGIN      
        1 aagaagagat tatatttgct ttaggaatcc ctcagatgga aaatcctata ccagcaggta
       61 tcatagaaac aacaaatggc cttgaagttc ctattacatt ggatgtaact tatttggcgg
      121 gtgctgatac cgcacatgtt aatgcatcag gaatatcagg aaacagaaaa agttcatata
      181 ttttattctt gttacaatca tcatatcaaa cacttaaaag aatgaatcaa aatgttgcat
      241 tgataatatt taacacaaaa gaacaggatt tgctatatct agatcaaaaa gaaaaattta
      301 taaaaaaaag aactgaaaga ttatttgatg tattagatct agaaatagag ccatttgaaa
      361 atgtaactta ttttttacca cgaggaaaag atggtaaacc taattcaatt catataccaa
      421 agaattacaa aacttattct tatgagctcg aagacgttta tgataggctt gaactgttat
      481 tttctgaacc ttatgattta catcacgatt tttcatcaat aataaattac atttctgaat
      541 attggccact aaaaagtaat attggaaaga atataaatac atggtcagat cttattgaat
      601 ttaaagaata tcctgaagca atagtatcaa aaaaatcttc tcttttgttc tttttaggta
      661 gattacaaag atttagaaaa tcctctatgt ttattgataa aaagaaaact agtacctatc
      721 ttggcaatga aattaaaaaa atcaaagcag gtgaagtgtt tgtaatagat gtggcgacaa
      781 tatcttcttt tgaagagcaa gcgtttgtag ttggcgatgt aatgaaaagt atagatgaaa
      841 tgtattctgc aaggtactat aaccttaaag atgaaaataa taataatact aatacagaga
      901 aagatcagag taatgttcaa aagaaccaaa aactacatta tatactagtc tttatcgatg
      961 aaattaatag atatataccc aaatctcaaa ggggaattat gaattcagtt tcagagcaaa
     1021 taatgagaac ggtagttgct ggaagaacga gaggaactat tttgttttcc gcacaacaat
     1081 tcaaaagtgc tacagatttt agattacaag aaaatactga tttacatatt acagcaaagc
     1141 taggattatc agaattatct actgagcctt attctatgct tgatgaaagt acaaaaatga
     1201 atatagttag actaaataaa ggagaattgg ttatgattca ttctgcattc agacacccaa
     1261 taaagatagg atttcctaaa gctacattta aaaaaccaaa gtaataaatc ctttggtaaa
     1321 taaggaatga tatttatatt tctttatatt tatgcccaat tattcccacc aaaataatca
     1381 atgagacata gtaaatagta attagtaaaa gttatattgt tgggaaatat aaggaattac
     1441 tcgaacaaga aataagttct atttgtagag aacaattgct tatatatgct agagaattta
     1501 gtggaataat acgtatcgga aatatacttt
//
LOCUS       DATCMF010000166         2080 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_34932, whole genome shotgun sequence.
ACCESSION   DATCMF010000166 DATCMF010000000
VERSION     DATCMF010000166.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2080)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2080)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2080
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34932"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            299..1336
                     /locus_tag="VIL14_02125"
     CDS             299..1336
                     /locus_tag="VIL14_02125"
                     /inference="COORDINATES: protein motif:HMM:NF013694.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046873 - metal ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HEY8522535.1"
                     /translation="MHYIITYDKSGVRQQKQISQTDLQNGYQIWLDLENPTSEEISNI
                     QEIFAIDANILNQYSSGVKKPQIRVLESYIFTILLNIKFKTLQTLETEAVYLFFGKNW
                     LITIHSSQIDLKEKTRQIFENDKMVIESTIDILYYNILTMIVEEYEQVLTAIEIAMTD
                     LEEKSLYQPSKKILVNLEGLSRQLIILRRYFWKIREIFNFLLYSQNESEDKNQKYTKY
                     LKIIYDNVNELLDLIESHKDTINSIRELYIAYVSLQMNDTIKTLTIFSVILLPLTFIT
                     GFYGMNGIDLTNFFSLPSGLIMVLVIMGIILAVLIIFFRKKQWISQREYYDIEKDIKK
                     GKKDKTLNTSN"
     gene            complement(1461..1802)
                     /gene="trxA"
                     /locus_tag="VIL14_02130"
     CDS             complement(1461..1802)
                     /gene="trxA"
                     /locus_tag="VIL14_02130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0015036 - disulfide oxidoreductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HEY8522536.1"
                     /translation="MTKEIEKVIPLNATKWSEKVLNSDIPVLVDFWAEWCGPCRLVGP
                     TLEQLAQSLEGKVKVSKLNVDQNQEIAMKYNIQSIPSLVLFKNGNEVARIVGLSSKEK
                     YETFVNNALNV"
BASE COUNT          785 a          277 c          279 g          739 t
ORIGIN      
        1 aattctggca agctttttga taccagtata ataaatggtg gtgattcagc tgaaatagat
       61 acatcagctg ttgatgcagg agcacaccca ttttattgca tggtacatcc atacatgaca
      121 gggagtttaa caatcgaata atttaaaatt agtatatttt cagagagaaa tttttttaca
      181 caatttttag taagataaaa gaagagaata caacaaacta tgatatttgt agtcaattga
      241 attctttaaa ttatatcttt atatttaaag gtaagagatt aataaaacaa taagactaat
      301 gcattatatt attacttatg acaaatccgg agttagacaa cagaaacaaa tttctcaaac
      361 agacttacaa aatgggtacc agatatggtt ggatttagaa aatcctacgt ccgaagaaat
      421 ttctaatatt caagaaatat ttgctattga tgctaatatt ttaaaccaat attctagtgg
      481 cgtaaaaaaa ccacaaatac gcgttttaga aagttatata tttactatat tgttaaacat
      541 aaagtttaaa actttgcaga cattagaaac tgaggcagtt tacctctttt ttggcaagaa
      601 ttggttaata acaattcatt catctcaaat tgatcttaaa gagaagacac gacaaatatt
      661 tgaaaatgat aaaatggtaa ttgaatcaac aattgacatt ttgtattaca atatcctaac
      721 aatgattgtg gaagaatacg aacaagtact tactgcaata gaaatagcga tgactgattt
      781 agaagaaaaa tctctgtatc agccttctaa gaaaatatta gtaaatttgg aggggttatc
      841 acgccaatta attattctcc gaaggtattt ctggaaaata agagagattt ttaatttttt
      901 actttattca caaaatgaat cagaagataa aaaccaaaaa tatacaaaat atttaaaaat
      961 tatctatgat aatgtaaatg aattattaga tttgattgaa tcccataagg acacaattaa
     1021 ctctataaga gaactttaca ttgcttatgt atcattgcaa atgaatgata caataaaaac
     1081 attaacaata ttttctgtta tacttttgcc tttaacattt attactggtt tttatggaat
     1141 gaatggaata gatttaacta atttctttag tttgccctct ggcttaatta tggttttagt
     1201 tattatggga ataatccttg cagtattaat tatatttttt agaaaaaagc aatggatatc
     1261 tcaaagagaa tattatgata ttgaaaaaga tataaaaaaa ggaaaaaagg ataagacact
     1321 taatacgtct aactagatgc agttaacaca ttcttttatt caacttatga atatgtcaaa
     1381 ggcaaaactt cttaaaataa ccataaaaaa gaaataatat ttttgacaat aataaaaaat
     1441 aatttgtttt aaaggtttgg ttatacgttc aaggcattgt ttacaaatgt ctcatatttt
     1501 tcttttgaag aaagtccaac aattcgtgct acttcattgc catttttaaa taatactaat
     1561 gaaggtatag attgaatatt gtatttcatt gcaatttctt gattttgatc aacattaagt
     1621 ttggagactt ttacttttcc ttccagagat tgagctaatt gctctagagt tggacctacc
     1681 aatctacaag ggccacacca ttccgcccaa aaatcaacta aaactggaat atctgaattt
     1741 aaaacttttt cactccattt cgttgcgttt aaaggaataa ctttttctat ttcttttgtc
     1801 attatgtata ttatttgatt aagatagata tagacttaca aatacatata aagtcacaaa
     1861 aataagataa ttaaccagta tttctttaat ttaatatcac aagtattaac aatttaaact
     1921 attccagttt ggtgttttta ctctttcatg atatcgttag ccataaggaa tttttttaca
     1981 tattcttgat gattaccttg taaaataatt aatccatttt tgtatgtccc tcccgtacca
     2041 attttctttt ttaattctct taagataatt cttatcaaat
//
LOCUS       DATCMF010000167         1832 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_352511, whole genome shotgun sequence.
ACCESSION   DATCMF010000167 DATCMF010000000
VERSION     DATCMF010000167.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1832)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1832)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1832
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_352511"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1071..>1832
                     /locus_tag="VIL14_02135"
     CDS             1071..>1832
                     /locus_tag="VIL14_02135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HEY8522537.1"
                     /translation="MKLLEYQGKELFKYYGINVPNSYLAKNLEDAKQGSHRIGFPFVL
                     KSQLTVGGRGKAGAILKCNNEKELVEKFNELVSKEVKGEKPKAILLEEMADIKREFYL
                     SLFLNRTKRCYSIIASSQGGIEIENVNNKVILDLPDVNGISSELASEVADKMNLNNSE
                     KNTFIDLIRKLSKLIYEKEAELAEINPLALLDGEKFVALDAKVIIDDNALFRHDDLKK
                     YEELSELESQAKNNGFSFVELDGDIAIIGNGAGLVM"
BASE COUNT          678 a          253 c          286 g          615 t
ORIGIN      
        1 aacagtatac gtgtattatt gctattgtgg gtgtactctt cgcgcttcta aatttaagat
       61 taattcatct catctattag caagaaatag acttttgttt gtggtaacag tagtgttatc
      121 ccatgaatgt gtactataat gtaattgtat aaataatcta gatcacaatt ctgattttat
      181 tagtacaaat ttagtattcg ttaaatttcg ttctattctt acaatgtatt cttaactttt
      241 ctattaagca catttttatc atcctaactg caactatttt tcaaatgtag aaaataaaat
      301 gcttgagagt acctacaagg accatcagtg tacacgatat tcttccactc atgatgaggg
      361 aatcctttgt tacagacatg tttcacttca gatacataga tacgttgtac agctttgtta
      421 gcaaatccaa ttgtaatcca taaccactta tactgatttg caatttgaat gacagtttca
      481 tctattatcg atgcaactac cctttcttaa tgtagattcg ataagaatca attctctata
      541 tatatctaat atttgatagc taggtaactt ctatcagaat gaatgtattt attaaaccaa
      601 aaccaaacta agaatattct attaaaaaga atccataact acaattctag atattgcatt
      661 tttgaaacga ttgactaaca actcttatta agataagttt tctatgatag atcagttcta
      721 ggtaaacagc accagttctt atattcttct ttgtttttta ttatggttaa aaatatattg
      781 actactactg ctgctccttt ccatgtttag atataatcaa gtaatttagt aaaatcactg
      841 acaattcaga atttagatat tcaaaattta gatatctgac tcaaacacca aaattaaaaa
      901 tacaaaatat gattctaaaa attatttaaa atttacttat cgtcatacaa tatctcacaa
      961 gtttacatat aacatcaaag gtgattcatg aaagcataag aagattggaa ttggtattag
     1021 gtaaaaaata agaatataaa ggctcgtaaa aatattttcc ttgtaaaaaa atgaaattat
     1081 tagaatatca aggaaaggaa ctttttaaat attatgggat caatgtgcct aattcatatc
     1141 tggcaaaaaa tcttgaagat gctaaacaag gatctcacag aattggtttt ccatttgtat
     1201 taaaatcaca actaacagta ggcggaagag ggaaggctgg agcaatttta aaatgcaata
     1261 atgaaaaaga acttgtagaa aagttcaatg aattagtaag taaggaagta aagggagaaa
     1321 agcctaaggc aattcttctt gaagaaatgg ctgatataaa aagagagttt tatttatctt
     1381 tatttcttaa tagaactaaa agatgttact caatcattgc ttcttcccaa ggaggtatag
     1441 aaattgaaaa tgtaaataac aaggttatac ttgatcttcc tgatgttaat gggatttcgt
     1501 cagaattagc atctgaagtt gcagataaaa tgaaccttaa caattctgaa aaaaatactt
     1561 ttatagattt aattcgaaag ttatcaaaac tcatatatga aaaagaagct gagttggcag
     1621 aaataaatcc attggccctc ctggatggtg agaaatttgt tgcattggat gctaaagtga
     1681 taatagatga taatgcttta ttccgacatg acgatttaaa aaagtacgaa gaattgtcag
     1741 aattagaatc ccaggcaaaa aataatggat tttcctttgt agagctggac ggggatatag
     1801 caataattgg taatggcgca ggattggtaa tg
//
LOCUS       DATCMF010000168         1627 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_164679, whole genome shotgun sequence.
ACCESSION   DATCMF010000168 DATCMF010000000
VERSION     DATCMF010000168.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1627)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1627)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1627
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_164679"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            79..771
                     /locus_tag="VIL14_02140"
     CDS             79..771
                     /locus_tag="VIL14_02140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin"
                     /protein_id="HEY8522538.1"
                     /translation="MQKLQLLLKDKLDKNTKIFFAELIGTFIVILFATGSVVLDAKLN
                     GALGLTFIAIAPAIAVAIGVYLFGKISMAHFNPAVTVGFLITNHIERKKGLLMVYLLA
                     EIIGGILASIFIFSVMGNEANLGANAPNYIDFPIYVIVGIEILASALLMLVILIVAYT
                     KGAKKFGGIAIGAIVGLDIFVFGLISGASMNPARSLAPAVVSGYYIDLWLYLTAPFIG
                     TSIVAVLLKNKF"
     gene            1228..1557
                     /locus_tag="VIL14_02145"
     CDS             1228..1557
                     /locus_tag="VIL14_02145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522539.1"
                     /translation="MFNNFNNINASSYDLLPRQFLIYIDYELSCFEKITNKKFFFNIL
                     KNDKFELNVYESKKAEEEEEEDNDKSKYHIIYRANNLYQFIKRLLMIREYLIKHFDNN
                     VTKTIIL"
BASE COUNT          640 a          173 c          242 g          572 t
ORIGIN      
        1 tagaagaccc aaaaggaaaa tctatagaag aagttagaga aataagagat gaaatagaaa
       61 aaagggtaaa ggaaattgtt gcagaaatta caacttttac tcaaagataa attagacaaa
      121 aatacaaaaa tcttttttgc agaacttatt ggaacattta tagtaatatt atttgctacc
      181 ggatctgttg tattagatgc aaaattaaat ggagcattag gacttacttt tatagcaatt
      241 gctcctgcta ttgctgttgc aataggagtt tatctttttg ggaaaatatc aatggcacat
      301 tttaatcctg cagtcactgt aggattttta attacaaatc acatagaaag aaaaaaagga
      361 ttactcatgg tttatctttt agcagaaatc ataggtggaa tattggcaag tattttcatt
      421 ttttctgtca tgggtaatga agcaaatttg ggtgctaatg ctccaaatta tattgacttt
      481 cccatttatg ttattgtagg aattgaaata ttagcatctg ctttactcat gttggtaata
      541 ctgatagtag catatacaaa gggagcaaag aaatttggtg gaatagcaat tggtgctata
      601 gtgggtttag atatctttgt gtttggatta atatctggtg cttctatgaa tcctgctcgt
      661 tcgttggcac ctgctgttgt atctggttat tatattgatt tatggcttta tcttactgca
      721 ccattcattg gaacttcaat agtagcagta ctgttaaaga ataaattttg actattttaa
      781 taataaaaaa ataaaaacct tagatgatta ttattattat tattatgtat agattacaaa
      841 taacaaatta agttaatgtt agaaaaattt aatatataat taactacttt ttcctaataa
      901 ttgccgagaa atctcaaaac ttgcaattga ttgtgacaaa gctatgaatg agtaactatt
      961 ttgttacatt ttaatttaga ataatttaat tatttaagat ttcattaact tagttattct
     1021 aaaggtcact ggcaaatgaa tcccttattg tgcattcgtc tttaatgata ctatatagta
     1081 gttattaaaa gataacaaga gaaacaaata ctatttaata atttaagtta atatcatagt
     1141 ctgaaataga taatcagaac tattaaaaag ctcactaagt aatgaattaa agtattaaat
     1201 aataaaacga tactattaaa actgttgatg tttaacaatt ttaataatat taatgctagt
     1261 agttatgatc tactcccaag acaatttctc atttatatag actacgagtt aagttgtttt
     1321 gaaaaaatta caaataagaa atttttcttt aatatattaa aaaatgacaa atttgaatta
     1381 aatgtatatg aatcaaaaaa agcggaagaa gaagaagaag aggataatga taaatcaaaa
     1441 tatcatataa tctacagagc aaataatcta tatcaattta tcaaaagatt attgatgatt
     1501 agagagtatt taattaaaca ttttgacaat aatgtaacaa aaacaataat attataataa
     1561 tcaaaaagga aaaaagggtt ttgctaagat tattttataa tattgataaa ctaataagta
     1621 aatattt
//
LOCUS       DATCMF010000169         3417 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_550838, whole genome shotgun sequence.
ACCESSION   DATCMF010000169 DATCMF010000000
VERSION     DATCMF010000169.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3417)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3417)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3417
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_550838"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(176..1612)
                     /gene="purF"
                     /locus_tag="VIL14_02150"
     CDS             complement(176..1612)
                     /gene="purF"
                     /locus_tag="VIL14_02150"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004044 - amidophosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HEY8522540.1"
                     /translation="MVTENCGVVGVFSLDQHNVIPFLIDSLRALQHRGQESWGIAIPN
                     KRPFRQLGLVSTYADNFNNLIKNYKSNAGIGHVRYSTFGKSTIENAQPLKVKDLCIAH
                     NGTIANVEELANMVGGCTFTPQTMSDTFIAAKRLVEHLSNKMNVSDSIKILKKEMIGS
                     FCFTFMTDKGYVYAARDTKGFRPLVLGFHKETNTYIVASESCAFSAVGAYLIRDVEPG
                     ELIKLSMNGLESETFSSDKPHAHCAFEYTYFAHPVSIMEGVNIYAARKRMGEILGKMF
                     PIPSADLVIPVPDSARPAALGYAQETGLPFEEGLVKDRHINKGALRSFIEPYQSDRIE
                     INKGILPIKDIIDGKNVVIIDDSIIRGTSSASIIQTLREAGANKIYMIVTYPPVRFPC
                     YAGIDFPSMDELLANQKFPNDGQKIGLNKKISKLIGADKVFYNDTKNLAKAIGIAEEE
                     LCFTCSTGNYSSLGITPKFRTREEVKGE"
     gene            complement(1705..>3417)
                     /gene="purL"
                     /locus_tag="VIL14_02155"
     CDS             complement(1705..>3417)
                     /gene="purL"
                     /locus_tag="VIL14_02155"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR01736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurL"
                     /protein_id="HEY8522541.1"
                     /translation="IEFDESFTNYCLVDVAAIGLGKRKNLIRNVIHENDIIILAGSST
                     GRDGIHGASFASKELAMENRSAVQIPDPFMEKLLIEVTREAMDANILKAVKDLGGGGL
                     SCCLSETSANLKKGFDIDLDKVPLKYSDMEAEEIMISESQERMLYIMNKRNFKSFAKI
                     LKKYEVPFAIIGTVKNHNDLVINKNGKTIAKMPSHLIAYAPLLNRNSKKPKYIDDLKV
                     KKIFVKLPHDLNKTFLNMLANPTIAFKNWVFQQFDHEIGLRTIVKPGITDCAVIKLNN
                     NKFLAAKLDGNSKACYQDPYQGTLSCLSEARANIISSGAHPIGMVDHLQFGNPENPEI
                     FWTFQKSIEAMIHFSNFNKIPIVGGKVSFYNETKIGPIKPSPVIGMLGLIKNMVGISK
                     NGPTPGDTLYIIGITSDDMGGSEYYAYLNRVTGGVVPQLDLQIDLINSDMILKIIKEQ
                     LISCSHDCSKGGLGIALAEMAIGSNCGVNIDLEKVPNTCKRLDFLLFAETPSRFIIGT
                     KNEEKLEKEFSKCKKLKYSKIGKVMDYGDNITFVSKNKKIINLEMQIAKKYFENISSI
                     MENH"
BASE COUNT         1038 a          644 c          491 g         1244 t
ORIGIN      
        1 taacctaatt tttctaatgt tctaagattt tgcacagcag gaagatgaat aatccctcct
       61 ccattctcag tcaaagtacc gtcaatgtct atggcaaaag ctttaataaa agaagtcatt
      121 tgagataata ttaagttata aatctatcct tgccttaaat ctttcagagg aacatctatt
      181 ccccttttac ttcttctctt gtcctaaact taggagttat tcctagtgaa ctgtaatttc
      241 cagttgaaca tgtaaaacat agttcttctt ctgctattcc tattgcttta gcaagatttt
      301 ttgtgtcatt ataaaatact ttatctgcac caattaattt acttattttt ttattaagac
      361 caattttttg tccatcattt ggaaattttt gatttgctaa tagttcatcc atagatggaa
      421 aatcgattcc agcataacaa ggaaaacgaa ccggaggata ggtaactatc atgtagattt
      481 tgttggctcc tgcttctctc agtgtctgaa taatagatgc ggaacttgta cctcggatta
      541 tactgtcatc tattattacc acatttttgc catcaataat gtctttgatc ggaagaattc
      601 ctttatttat ttctattctg tcagattgat aaggttcaat aaaacttctt aatgcgcctt
      661 tattgatatg cctatcctta actaaacctt cttcaaaggg taatccggtc tcttgagcat
      721 aacctaatgc cgcgggccta gcggaatcag gaacaggaat tactaagtct gctgagggaa
      781 ttgggaacat tttacccaag atttctccca ttctttttct cgctgcatat atatttacac
      841 cttccataat acttacggga tgagcaaaat aggtatattc aaaagcacaa tgagcatggg
      901 gtttatccga agaaaaagtt tcactttcta aaccattcat gcttagttta attagttctc
      961 ctggttctac gtctcttatt agataagccc ctactgcaga aaaggcacag gattctgatg
     1021 caacaatata tgtatttgtt tctttgtgaa atcccaacac caatggtcga aaacctttag
     1081 tatctcttgc agcataaaca tatcctttat cagtcatgaa tgtaaaacaa aaagatccta
     1141 tcatctcttt ttttaaaatt ttgatcgaat cacttacatt catcttatta gaaagatgct
     1201 ctaccagtct tttagcagcg ataaaggtat cactcattgt ttgaggagta aaggtacatc
     1261 ctccaaccat atttgccaat tcctcaacat ttgcaattgt tccattatga gcaatacaca
     1321 agtctttaac ttttaatggt tgagcattct ctattgtact ctttccaaaa gtagaatacc
     1381 gaacatggcc tattccagca ttcgatttat aatttttaat gagattgtta aaattatctg
     1441 cataagtaga aaccagacct aattgtctga atggtctctt attaggtatg gctattcccc
     1501 atgattcttg acctctatgt tgaagagctc gtaaagaatc aatgagaaat ggaattacat
     1561 tatgttgatc taaagaaaaa acccctacaa ctccacaatt ttctgttacc atttcaatat
     1621 accattactt atgccatcaa aatattttaa tcatatgtat tatcaatgac tcttttaata
     1681 aaaattcaca ttcattactt tagttcaatg gttttccata atggaggaaa tattttcaaa
     1741 atattttttt gcaatttgca tttccaaatt tatgattttt ttattcttcg aaacaaatgt
     1801 tatattatct ccataatcca ttacttttcc gatttttgaa tattttaatt ttttacattt
     1861 agaaaattct ttttctagtt tttcttcatt ttttgttcca atgatgaatc tagagggagt
     1921 ttcagcaaaa agaagaaaat ctaatctttt acatgtatta ggcacttttt ccaagtcaat
     1981 gtttactcca caattagagc caatagccat ctctgccaac gcgataccta gaccaccctt
     2041 tgaacaatcg tgagaacaac taattaactg ttctttaata atttttaaaa tcatatcgga
     2101 attaatcaaa tcaatttgta agtccaattg tggcacaact ccacctgtta ctctatttaa
     2161 gtacgcataa tattctgaac cacccatatc atcagacgtg attcctatga tgtataacgt
     2221 gtcgcccgga gtaggaccat ttttggatat accaaccata tttttaataa ggcctaacat
     2281 tcctattact ggtgaaggtt ttatcggtcc aattttagtc tcattataaa aacttacttt
     2341 tccaccaact attgggattt tattgaaatt gctgaaatga atcattgctt ctatactttt
     2401 ttgaaaggtc caaaagattt cagggttttc aggatttcca aattgtagat gatcaaccat
     2461 tcctatcggg tgtgctccgg aggaaattat atttgctcgg gcttcagaaa gacaggataa
     2521 agtaccttga taaggatcct gataacatgc tttagaattt ccatctagtt ttgctgccaa
     2581 aaatttatta ttatttaatt ttatgacagc acaatctgtt attcctggct taacaatggt
     2641 tcttagtcct atttcatgat caaattgctg aaatacccag ttcttgaatg cgatcgtagg
     2701 attagctagc atatttagaa aggttttatt caagtcgtgt ggaagcttca cgaagatttt
     2761 cttgactttc aaatcatcaa tatattttgg ctttttacta tttctgttca acaacggagc
     2821 atatgcaatc aaatgtgaag gcatttttgc aatggttttt ccgttcttat ttattacaag
     2881 gtcattatga ttcttaactg taccaattat tgcgaagggt acctcatatt tctttagtat
     2941 ttttgcaaaa cttttaaagt tacgcttgtt cataatatat aacattcttt cttgtgattc
     3001 agagatcatg atttcttcag cttccatatc actatatttt agaggaactt tatccaaatc
     3061 gatgtcaaaa cctttcttta aattagccga ggtttccgaa agacaacaag aaaggcctcc
     3121 tcctcctaag tctttaacag cttttagaat attagcatcc atggcttctc tagtgacttc
     3181 aattaataat ttctccataa agggatcagg aatctgaact gccgatctat tttccattgc
     3241 caattcctta gatgcaaatg atgcaccatg tatgccatct ctgcctgtac tactgcctgc
     3301 taggatgata atatcatttt cgtggataac atttcttatc agattttttc tttttcccag
     3361 tcctattgct gcaacatcca ccaaacaata atttgtgaaa gattcatcaa attctat
//
LOCUS       DATCMF010000170         1962 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_484778, whole genome shotgun sequence.
ACCESSION   DATCMF010000170 DATCMF010000000
VERSION     DATCMF010000170.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1962)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1962)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1962
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_484778"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            252..378
                     /locus_tag="VIL14_02160"
     tRNA            join(252..270,287..321,358..378)
                     /locus_tag="VIL14_02160"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:303..305,aa:Met,seq:cat)
     gene            complement(392..1759)
                     /locus_tag="VIL14_02165"
     CDS             complement(392..1759)
                     /locus_tag="VIL14_02165"
                     /inference="COORDINATES: protein motif:HMM:NF020078.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA(Ile)(2)-agmatinylcytidine synthase"
                     /protein_id="HEY8522542.1"
                     /translation="MNTDTNDNNILHIGFDDTDSTLGKCTTHLAFKITSYLYKKNVKF
                     LDYPLLIRLNPNIPWKTRGNGAVCLRIMTRAKNNKNIIDFIKNELENNSEIGKGANPG
                     LVCLQSKEIPDEIKEFHRLAMFDILSKQKAIKLAQRYDLKYFSFGNGQGLVGAIAAIG
                     CLLNSDHTFEILTYRKIKNCGTLRIIDPVNVIRLHNTTFPSTFNSYDYIHKRVLILPH
                     GPDPVFCGIRGEDPLVLHNSLKILEIEEDLAGYMIYRSNQGTGMHLQNELKLSKIKSF
                     TSGYANCVIVTNPQIIQGGHVLFTVEDKLKNICLAVVYEPTGLTKIASQLHIGDQIEI
                     GFGVRKATAKHSKVLNIEYIFIQQLAQIYNTVNPVCINCNKRMKSEGKNKGYQCKKCK
                     IIDKNCKKILLIKTRSIKEGLYIPTLKAHRHLTKPFHRYGKEKTKFFEFGNVELYPKW
                     FERFR"
BASE COUNT          643 a          303 c          262 g          754 t
ORIGIN      
        1 ctcatctctt aggagttcgt gggttcaaat cccacctccc gcatccataa gcctaaaatt
       61 tttttctata tcattgccaa aactttttga ttaatattct gatatagaaa aaagcattat
      121 aaataattaa acaaatataa aatttcttat aaatattata agttattata taatgttttt
      181 gaaaaattat ccaaaaatat tttaaatttc aatagacaga gatatatagt tgtaaaatca
      241 aaaaaggaat cagcggggtg gggaagccag atatataata ggcaaagtta tcccggcggg
      301 ctcataaccc gcagagcggt ttctacctca gtaaatattg ctttacggta gccgtaagtt
      361 caaatcaacc ccccgctatt tgttttttgg tttatctaaa tctttcaaac catttcggat
      421 acaattctac atttccgaat tcaaaaaatt tagtcttttc ttttccatat ctgtgaaaag
      481 gtttagttaa atgtcgatgt gcttttaatg tagggatgta taatccttcc ttaattgatc
      541 ttgtttttat taagaggatt tttttacaat ttttatcgat tattttgcat tttttgcatt
      601 ggtacccttt attttttcct tctgatttca tcctcttgtt acaatttata caaactggat
      661 taacagtatt ataaatttgt gcgagttgtt ggataaaaat atattcaata tttaatacct
      721 ttgaatgttt tgcagtagct tttctaacac caaatcctat ttctatttga tctcctatat
      781 gtaattgtga agcaatttta gttaatccag ttggttcata tactactgcc aaacaaatat
      841 tttttaattt gtcttcaact gtaaataata catgtccacc ttgaataatt tgtggatttg
      901 ttactattac acagttagca tatccagaag taaaagattt tatcttagac aatttcaatt
      961 cattttgtaa atgcattcca gttccttgat tagagcgata aatcatatat cctgctagat
     1021 cttcttcgat ttccagaatt tttaaactat tatgtaatac cagcggatct tctcctctaa
     1081 ttccacaaaa cactggatca ggtccatgtg gtaatataag aactcgttta tgtatgtaat
     1141 cataactatt aaaggtagag gggaatgttg tattgtggag acgaataaca tttactggat
     1201 cgattattct gagagttcca caatttttaa tttttctata tgttaatatc tcaaatgtat
     1261 gatctgaatt taataaacat ccaatagcag ctatagctcc aactaatcct tgaccattcc
     1321 caaaactaaa atattttaaa tcatatcttt gtgctagttt tattgctttt tgtttactaa
     1381 gtatatcaaa cattgcaagt ctatggaatt ccttgatttc atcaggaatc tctttgcttt
     1441 gcaaacaaac caatccggga ttagcacctt taccaatttc agaattgttt tctagctcat
     1501 ttttaataaa atcaattata tttttattat ttttagctct agtcattatt ctcaaacaaa
     1561 cagcaccatt tccacgagtt ttccatggaa tgttgggatt taatcttatt aacaaaggat
     1621 aatctaaaaa tttcacattt tttttgtaaa gataagatgt aattttgaat gctaaatgag
     1681 tagtacattt tcccaatgtt gagtctgtat catcgaaccc tatatgcaga atattattgt
     1741 catttgtatc tgtgttcatc aacattgcta acttatatta aatcattaaa taaatttaat
     1801 ttgttttgaa ataagataag aaactaaaat catattaaat attttgcata attacttttt
     1861 tatattgaac atgaaataaa agatatcatg caatttaaaa tgttggaaga tcttgatttt
     1921 acaaaacgtg ggggattatt acccgtaata gttcaagatc ag
//
LOCUS       DATCMF010000171         4897 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_485224, whole genome shotgun sequence.
ACCESSION   DATCMF010000171 DATCMF010000000
VERSION     DATCMF010000171.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4897)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4897)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4897
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_485224"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            235..576
                     /gene="trxA"
                     /locus_tag="VIL14_02170"
     CDS             235..576
                     /gene="trxA"
                     /locus_tag="VIL14_02170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0015036 - disulfide oxidoreductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HEY8522543.1"
                     /translation="MGTEHSVTQVNNSSWEKEVLQSQLPVFVDFWAEWCGPCRMVGPA
                     VEQLSKTLEGKVKTVKLNVDENQEIAVKYGIHSIPSLLLFKDGKEIARTVGAAPKEAY
                     QKFIEESLNKN"
     gene            676..3423
                     /gene="alaS"
                     /locus_tag="VIL14_02175"
     CDS             676..3423
                     /gene="alaS"
                     /locus_tag="VIL14_02175"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HEY8522544.1"
                     /translation="MGKKEISTLFSSDPDKYYRVSLFDRLGFKRNKCISCEKFFWSLI
                     DKNICPDHEAYNFIGNPPTNKRLDYIGAWKEIEKYFQSNGHSIVRRYPVVCRWREDLY
                     FTIASIVDFQRIMNNKVIFELPSNPLVVPQMCLRFNDVENVGVSGRHYTSFCMIGQTC
                     NADAPGGYWKDHCIDLDFGLLTNVLGIKPEEITFVEDIWMGAGAFGSSLEYFVRGLEL
                     GNAVFTEFEGDENNYRIMKNKIIDMGAGLERLSWITMGTPTSYDCSFGPVIKYLENAI
                     EVQKDEKFLSNYFKLVSSKFNNIEDDSSDKIKKLKKTISQEMRIPFEHLEKIVSPYEA
                     IYTIADHTRTLLFAISDGSLPSNVGGGYNLRILLRRVLSIIERFKWNIKIEDLIDTHV
                     EYLKNMYPELEENKQEVYTILKIESDRYASTRQRMNDIASTIRKNNKQLTVDDLIRLY
                     ESDGITPDFLKEINVITDIPSNFYVKLSELHNINQKSLYSPSIEGLDGLPPTRLLYYE
                     DSSIREFYAQIIKIKENYVILDQTSFYPRGGGQEPDKGNIGDVKVLEVIKQGDTVLHR
                     VENLSSLSEGLRVKCRVDEVRRDSITKHHTSTHILNSSSRTTLGSWVWQNSAFKDVNY
                     GRLDITHHSALNKEEVERIEKTANEIVMKNLDVNIKEYERGESEQKFSFRIYQGGVVP
                     SNKVRIVKISEFDIEACGGTHVNRTGELGLIKILKSERIQDGVVRLEFVAGQAAIDYI
                     KNQDRNISFITQSLGSSKEKLTHSFKKHLDESEKLKTKIKILLRKTSPILAKSISTNS
                     KQISSNGVKLFTTYDEELDEEFHITIGEKSINLDPFLIYISLISKGEGEGIRVIVFVG
                     ETARKYGFNAGKIAKIFSISLGGSGGGDSKFGQGGGRFKNRIEEVLNSSERYVSETLK
                     R"
     gene            3404..>4897
                     /locus_tag="VIL14_02180"
     CDS             3404..>4897
                     /locus_tag="VIL14_02180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HEY8522545.1"
                     /translation="MKHSRGENNLDSREINDNNSINWKELEAKWKSRWKEDHLFEADY
                     DNTNKKKYFITVAFPYPNSPQHIGHGRTYSLADVHARYMRMKGYNVLFPMGFHYTGTP
                     ILAMSKRVIAEDQDLIGTFKNLYNVPENIIKSFIEPENIAKFFHHEIKLGMQDMGYSI
                     DWRREFTTIDMLYSKFITWQFKTLQKKGLIVQGSHPVGWCPYDKNPVSQHDTIGDVEP
                     EFIEYVLIKFRLVDNDIILPTATLRPETIFGVTNLWVNPDIEYFIIDVDNNAEQWIVT
                     KEASTKLEFLNHNIKIIRTIKGNELIGKFATDIIRNIDIPILPAKFVKPDTGTGIVMS
                     VPGHAPYDFQALIDLKKETNLHSFNIDLSQINPIKIIEIQEANLNGNSLISCVEDVIS
                     KFKINNQSDLGLEKATSEIYHLEYYQGKMLPNTGKYSGMDVQLAKEEIKNYLLATKNL
                     SEIFYEFINKPIKCRCGNECFVKLLNDQWFINYKDKEWKHKVHNYIDE"
BASE COUNT         1879 a          646 c          842 g         1530 t
ORIGIN      
        1 aataacatca aatctaacat agtttttgca cttttaataa tagatactac ataggttagc
       61 taaatagatt agtagtagtg aatcatgcaa caaagcatat ttttcagcat aaatggtttg
      121 caacaactct aatccaaaaa aaagaatgtt gagacattta tcttgagttc aacaactatt
      181 ttgtaatttg catttttagt atgattcaaa taacctacaa tcaaattaaa atatatggga
      241 actgaacata gtgtaactca agtgaacaat tcctcatggg aaaaagaagt attacaatca
      301 caattacctg tttttgttga tttttgggca gaatggtgtg gaccttgtag aatggtagga
      361 ccagcagtag aacaattatc aaaaacactt gaaggaaaag taaaaactgt aaagcttaac
      421 gtagatgaaa atcaagagat tgccgtaaaa tatggaattc attctatacc ctcattgcta
      481 ttattcaagg acggtaagga aattgcaaga actgtcggcg ctgctcctaa agaagcctat
      541 caaaaattca tcgaagaatc tttaaacaag aattaacatt aatttcattt catttcattt
      601 tattaatctg agtgtagttt ttatttctgt attcataaaa gcattaatat agataataat
      661 aatcgttagc ataatttggg taaaaaagag atttctactc tattttcatc tgatcctgat
      721 aaatattata gagtttcctt atttgataga ttaggtttta aacgaaacaa atgtatatct
      781 tgtgaaaaat ttttttggtc gcttatagat aaaaatattt gtcctgatca tgaggcctat
      841 aactttatag gaaatcctcc tacaaataaa agactagatt atataggagc atggaaggaa
      901 attgaaaaat attttcaatc aaatggtcac tccattgtaa gacgataccc agtagtctgt
      961 aggtggcgag aagatcttta ttttacaatt gcgtcgatag tggattttca aaggataatg
     1021 aataataaag ttatttttga attgccgtca aatcctttag tagtaccaca aatgtgttta
     1081 agattcaatg atgttgaaaa cgtaggggta agcggccgtc attacactag tttttgtatg
     1141 attggtcaaa catgtaatgc agatgcacct ggaggatact ggaaggatca ttgcattgac
     1201 ctagactttg gattattaac taatgttttg ggaataaaac ctgaagagat tacatttgta
     1261 gaagatattt ggatgggtgc aggagctttt gggtcttctt tagagtattt tgtacgtggt
     1321 cttgaacttg gtaatgctgt ttttacagaa tttgaaggag atgaaaataa ctatagaatt
     1381 atgaaaaata agattattga tatgggtgca ggcttggaac gattatcatg gattactatg
     1441 ggtactccaa ccagctatga ttgttcgttt ggaccagtta taaaatattt agaaaacgct
     1501 attgaagttc aaaaagatga aaaatttcta tcaaactatt ttaaattagt atctagtaaa
     1561 ttcaacaata ttgaagatga ttcatctgat aaaataaaaa aattgaaaaa aactatttct
     1621 caagagatga gaataccatt tgaacacctc gaaaaaattg tatctccata tgaagcaatt
     1681 tatacaatag cagatcacac gaggacattg ttatttgcga tttctgatgg atcattacct
     1741 tctaatgtag gaggaggtta taaccttaga attcttttac gtcgagtttt atctattatt
     1801 gaaagattca aatggaatat aaaaattgaa gatctaattg atacacatgt agaatatctc
     1861 aaaaatatgt atcctgaact agaggaaaat aagcaagagg tttataccat tcttaaaatt
     1921 gaatctgata gatatgcaag cacaagacaa cgaatgaatg atatcgcatc tacgatacgt
     1981 aagaataaca aacaactaac tgtagatgat cttataaggt tgtacgaatc cgatggtatt
     2041 actcctgact ttcttaaaga aatcaatgta ataactgata taccttcgaa tttttacgtt
     2101 aaactatcag aattacataa tattaaccaa aaatctcttt actctccgtc aatagaagga
     2161 ttggacggct taccacctac tagattattg tattatgagg attcttccat tcgagaattt
     2221 tatgctcaaa ttataaaaat aaaagaaaat tatgtaattt tagatcaaac atctttctat
     2281 ccaagaggag gtggacaaga acctgataag ggaaatattg gtgatgttaa agtcttagaa
     2341 gtcataaaac aaggagatac tgtacttcat cgggtagaaa atttatcatc tctttcagaa
     2401 gggctacggg ttaaatgtag agtagatgag gtaagacggg attcaataac aaaacatcat
     2461 acatctactc atatattaaa ttcttcatca agaactacac ttggttcgtg ggtatggcag
     2521 aactctgcct ttaaagatgt caattatgga agacttgaca taactcacca ttctgcatta
     2581 aataaagaag aagttgaaag aatcgaaaaa actgctaacg aaattgtaat gaaaaacctt
     2641 gatgtaaata taaaagaata tgagagagga gaaagtgaac aaaaattttc ctttcgtatc
     2701 tatcaaggtg gagtagttcc atcaaataaa gtaagaatag tgaaaataag tgaatttgac
     2761 attgaagcat gtggaggaac acatgtcaat agaacaggtg aattaggttt aattaaaatc
     2821 ctcaaatcag aaagaattca ggacggtgtt gttcgattag aatttgttgc gggacaggct
     2881 gctatagatt acattaaaaa tcaggataga aatatttcat ttattaccca atcattaggt
     2941 tctagtaaag aaaaactaac acattcattc aaaaaacatt tagatgagtc agaaaagctt
     3001 aaaacaaaga taaaaattct tttacgaaaa acttctccaa ttcttgccaa atctatatcc
     3061 actaatagta aacaaatatc atcaaatggg gtaaaattat ttacaacata tgatgaggaa
     3121 ttagatgaag aattccatat tacaatagga gaaaagtcca ttaaccttga tccttttctc
     3181 atatatattt cacttatctc caaaggagaa ggagaaggca tacgcgtaat agtttttgtt
     3241 ggtgaaactg caagaaaata tggttttaat gcaggaaaaa tagcaaaaat cttctctatt
     3301 agtttaggtg gctctggagg aggagattca aagtttggtc aaggaggagg tagatttaag
     3361 aatagaattg aagaggtctt aaattcatca gagagatatg ttagtgaaac actcaagagg
     3421 tgaaaataat ctggatagta gagaaataaa tgataataat agtattaatt ggaaagaact
     3481 ggaggcaaaa tggaagtcta gatggaaaga agaccatctt tttgaagccg attatgataa
     3541 tactaataaa aaaaagtatt tcataactgt tgcatttccc tatcctaatt ctccacagca
     3601 tataggacac ggaagaacat attcactagc tgatgttcat gctagatata tgagaatgaa
     3661 aggctataat gtattatttc caatgggatt tcactatacg ggaactccta tcttagctat
     3721 gtccaaaaga gtaatcgcag aagatcaaga tttaattgga acttttaaaa atttatataa
     3781 tgtgcctgaa aatatcatca aatcatttat agaaccagaa aatatagcaa aattttttca
     3841 tcatgagata aaattaggaa tgcaagatat gggttattct atcgattggc gacgagaatt
     3901 tacaaccatt gatatgttat attcgaaatt cattacttgg cagtttaaaa cattacaaaa
     3961 aaaagggtta attgtacaag gttctcatcc tgtaggatgg tgcccctatg ataaaaatcc
     4021 tgtaagtcag catgatacta ttggagatgt agaaccagaa tttattgaat atgtcttaat
     4081 aaagtttagg ttagtagata atgatataat acttcctact gctactttaa gaccagaaac
     4141 tatatttgga gtcacaaatc tttgggtaaa tcctgatatt gaatacttta taatagatgt
     4201 agataataat gctgaacaat ggattgttac taaagaggct tcaacaaaat tagaatttct
     4261 taatcataat ataaaaatta ttagaactat caaaggaaat gaattaattg gtaaatttgc
     4321 aacagatatt attagaaata tagatattcc tattcttcct gcaaaatttg taaaacctga
     4381 tacaggaact ggaatagtaa tgtcggtgcc tggtcatgct ccatatgatt ttcaagctct
     4441 tattgactta aaaaaagaaa caaatttaca ttcatttaat attgacttat cacaaatcaa
     4501 tccaataaaa attatagaaa ttcaagaagc taatttaaat ggcaatagtt taatatcatg
     4561 tgtagaagat gtaatatcaa agttcaaaat taacaatcaa tcagatttag gtctggaaaa
     4621 agcaacaagt gaaatctatc atctagaata ttaccaaggc aagatgttac ctaatacagg
     4681 aaaatactct ggaatggatg ttcaattagc taaagaagaa ataaaaaact atttgcttgc
     4741 tacaaaaaac ttatctgaaa ttttttatga attcattaat aagccaatta aatgcagatg
     4801 tggtaatgaa tgttttgtca agttactgaa tgatcaatgg tttattaatt ataaagataa
     4861 agaatggaag cataaagtac ataattatat agatgaa
//
LOCUS       DATCMF010000172         2181 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_353310, whole genome shotgun sequence.
ACCESSION   DATCMF010000172 DATCMF010000000
VERSION     DATCMF010000172.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2181)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2181)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2181
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_353310"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..589)
                     /locus_tag="VIL14_02185"
     CDS             complement(<1..589)
                     /locus_tag="VIL14_02185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEY8522546.1"
                     /translation="MSIDNDSSSSDTFFTSPNLKITLEKNKFQAKRAESLQNIETFWA
                     EQAENLVWNRHWNKTLEWNPPFAKWFVGGLLNASINCLDRHINSEIKNKAAIIWEGEN
                     GENITITYYQLYQKVNQFSNALQNLGIRKGDRVTIYLPMVPELPIALLACSRIGAIHN
                     VVFSGFSSTALVDRINDAKSKVIITADGGFRRGKII"
     gene            829..1086
                     /locus_tag="VIL14_02190"
     CDS             829..1086
                     /locus_tag="VIL14_02190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEY8522547.1"
                     /translation="MKYRSRTEIVSMILEAANGGATKTKIMYKAFLSYAQLREYLSVL
                     IENNLLEYLDGTQTYKTTEKGLNFLKMHSEIGELLQTPAKF"
     gene            complement(1244..>2181)
                     /locus_tag="VIL14_02195"
     CDS             complement(1244..>2181)
                     /locus_tag="VIL14_02195"
                     /inference="COORDINATES: protein motif:HMM:NF037920.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CdvA-like protein"
                     /protein_id="HEY8522548.1"
                     /translation="LMGNVVGVITDTDGSIESVSVDCGDSGLKQLSYEQLLVQGDYVI
                     FIPKWRLDAQKLFRQKNLTLKRIKALQHLVEEDDTMKEDAEIVYVKYEKKLDELEEKE
                     KSINEKLKERLEELNESTKNIKSILFDAKLQYKSHEISEETYLQVTRYTKELMDHINL
                     EKEEINNIKGRLEEQNLENTLPLPHSIQPEEEDNKKEKEDPKLSTTNTNSVSPTITTT
                     PTNKTSSSSTTTATVTASNTNNSNSSNASLPVSPTSNDNNNTQTKLSYAEETDKYKQH
                     ASSNNNADHSNQNKDKIEKSNTDNESNWLDHVINN"
BASE COUNT          710 a          303 c          302 g          866 t
ORIGIN      
        1 caattatttt tccccttcta aatcccccat cggcagtaat tatgacctta gatttagcat
       61 catttatccg atctaccaat gctgtggaac taaaaccaga aaaaactaca ttgtgaatgg
      121 ctccaattct tgaacaagct aaaagggcga taggaagttc ggggaccatc ggcaaataga
      181 ttgtaactct atctcctttt cttataccaa gattttgtaa tgcatttgaa aattgattaa
      241 ctttttgata aagctgataa tatgttattg ttatattttc tccattttct ccttcccata
      301 ttatggcagc cttatttttg atttcagagt tgatatgtct atctaagcaa tttattgatg
      361 catttaataa tccaccaaca aaccatttag caaatggagg attccattct agggtcttat
      421 tccaatgtct attccatact aaattttcag cttgttctgc ccaaaatgtt tcaatatttt
      481 gtaatgattc tgctctttta gcttgaaatt tatttttctc taaggtaatt ttcagattag
      541 gacttgtgaa aaatgtgtca gatgatgaac tgtcattatc aatggacatg atatatacaa
      601 tgatagtact actagttaaa ttattgtatt atataataaa tatgagttaa ggttatttga
      661 ctaaactatt tatatgttct actaattaat atctaaacaa gtttagttaa caagtttatt
      721 aaaataatat tgcctaagaa ttttgacatc attgagtata agtatagaat aatgttatac
      781 tacattttgt caatatatta aaataaacaa attaataatt taaagaatat gaaatacaga
      841 agtagaacag aaatagtatc aatgatacta gaggcggcga atggtggagc aaccaagaca
      901 aaaattatgt acaaagcttt tctaagttat gcacaattga gagaatatct ttctgtttta
      961 attgagaaca atctattaga atatcttgat ggaactcaga cctataaaac tacagaaaaa
     1021 ggattaaact ttcttaaaat gcatagtgaa attggagaat tattacaaac tccagcaaaa
     1081 ttctagtatc gtataaattc accactaact ttttttactt tttattgttt tattctttaa
     1141 attctaatat tttactaaaa ttatagataa ataaataatc acatttaaga accttaagaa
     1201 cctaaaaaaa tagatacata aaattaaaaa tataaaaaaa ttattagtta tttataacgt
     1261 gatctagcca attagattcg ttatctgtat tacttttttc tatcttatct ttattttgat
     1321 tggagtgatc tgcattatta ttagaggatg catgttgttt atatttatca gtttcctcag
     1381 cataggagag tttagtttgt gtattattat tatcatttga tgtaggggat acaggtaatg
     1441 atgcattaga agaattagaa ttatttgtat tggatgcagt cacagttgct gttgttgttg
     1501 atgatgatga tgttttatta gtgggagtag tagttatggt aggactaacg gaatttgtat
     1561 tggtagtaga taattttgga tcttcttttt cttttttatt atcttcttcc tctggttgaa
     1621 ttgaatgtgg caaaggtaat gtgttttcta ggttttgttc ttcaagtcta ccttttatat
     1681 tattgatttc ttctttttct aaattaatat gatccattaa ttctttagta tatcttgtaa
     1741 cttgtagata tgtttcttct gatatttcat gacttttgta ttgtaacttg gcatcaaata
     1801 aaattgattt aatatttttt gttgattcat ttagctcttc aagtctctct tttagttttt
     1861 cattaataga tttttctttt tcctctaatt cgtctagttt cttttcatac ttaacatata
     1921 caatttctgc atcttctttc atggtatcat cctcttcaac taaatgttga agtgctttaa
     1981 ttcttttaag cgttaaattt ttttgcctaa ataatttttg tgcatctaat ctccatttag
     2041 gaatgaagat tacataatca ccttgtacca atagttgttc ataagataat tgttttaaac
     2101 cagaatcacc acaatctaca ctaacagatt caattgaacc atcagtatca gtaataactc
     2161 ctacaacatt tcccattaat g
//
LOCUS       DATCMF010000173         1818 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_353389, whole genome shotgun sequence.
ACCESSION   DATCMF010000173 DATCMF010000000
VERSION     DATCMF010000173.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1818)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1818)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1818
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_353389"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1466
                     /locus_tag="VIL14_02200"
     CDS             <1..1466
                     /locus_tag="VIL14_02200"
                     /inference="COORDINATES: protein motif:HMM:NF019368.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004559 - alpha-mannosidase activity
                     [Evidence IEA];
                     GO_process: GO:0006013 - mannose metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycoside hydrolase family 38 C-terminal
                     domain-containing protein"
                     /protein_id="HEY8522549.1"
                     /translation="QVTNWTEIILEFNEGEIKGISCLKSGDQIIEIEILDYSLYQDDT
                     IKKISIGCIISVPPFGYKTLKIVKSDKIDGETIIAHDTSFKNKEYEIEVNRENAIITV
                     FKSIKNNKKLHYCTGNEIILDEEIGDLYYHRENLKLFKSETGDGIKYGIFKPEKYEVI
                     HRKLKSHIKFKSKYFALRWPYRFTEKLKPMMFRHDFIDIEKEIIIYKNLNRIDFVTHI
                     FNKHPHSRLRVRFDTKSRAKSYWCGTQFGVVERKTDLYYQKDSRKWFEKPSGVFPSLE
                     WIDYSIKNDSNKTVGISLLHQGLPSHEIRDGSIYLTLLRSIVLLSSDGIMGPCIPTPD
                     AAEVKPYTFKYSILPHENDWSEDLIYQHGSEINMSLIPIQIKKNNGRKNNIAENNGNK
                     LNILDNSKSFLEISESNVMLSTMKLSDDKKGIILRIYETEGKKTIAKIKLVAKIKNTK
                     LIDFMENEIQEIKKIDNDTIIIQIDPFKIITLKILFK"
BASE COUNT          771 a          210 c          279 g          558 t
ORIGIN      
        1 ggcaagttac aaattggaca gaaataattt tagaatttaa tgaaggtgaa atcaaaggta
       61 taagttgctt aaaaagtgga gatcagatta tagagataga aattcttgat tattcgttat
      121 accaagatga tactattaaa aaaataagta taggttgtat tatctctgtt cctccatttg
      181 ggtacaaaac tttaaagata gtaaagtcag ataaaataga cggcgaaaca ataattgctc
      241 atgatacaag ttttaaaaat aaagaatacg aaattgaagt aaatagagaa aatgcaatta
      301 ttacagtttt taaatccata aagaataaca aaaaattaca ctattgtaca ggaaatgaaa
      361 taatattgga tgaagagata ggagatcttt attatcatcg ggaaaatcta aaattattta
      421 aatcagaaac tggtgatgga attaaatatg ggatatttaa accagaaaaa tacgaagtaa
      481 tacatagaaa actgaaatcc catataaagt ttaagagcaa atattttgca ttaagatggc
      541 catatagatt tactgaaaaa cttaaaccaa tgatgtttag acacgatttc atagatattg
      601 aaaaagaaat aataatctat aagaatttaa atagaataga ttttgtaacc catattttta
      661 ataagcatcc tcattcacga ctcagagtaa ggtttgatac taaaagcaga gcgaaaagtt
      721 attggtgtgg aacacaattt ggggttgtcg aaagaaaaac cgatctttat tatcaaaaag
      781 atagtcgcaa atggtttgaa aaaccttcag gagtatttcc ctcacttgaa tggattgatt
      841 attctataaa aaatgattct aataaaaccg tcggaattag tcttcttcat cagggtttgc
      901 catctcatga aatcagagat ggatcgatat accttacgtt acttcgtagt atagtattat
      961 tatcttctga cggtataatg ggaccatgta tacctacacc tgatgcagct gaagttaaac
     1021 catacacttt taaatattca atcctacctc atgaaaacga ttggagtgaa gatctaatat
     1081 atcaacatgg atcggaaata aatatgtcgt taataccaat tcagataaag aaaaacaatg
     1141 gtagaaaaaa taatatagca gagaataatg gaaataagct taacatatta gataattcca
     1201 aatcctttct ggaaatctca gaaagtaatg tgatgttgag tacaatgaag ttaagtgatg
     1261 ataaaaaggg aattatttta agaatttacg aaactgaagg gaaaaaaaca atagcaaaaa
     1321 taaaacttgt agcaaaaata aaaaatacaa aattaataga ctttatggaa aatgagattc
     1381 aagaaattaa aaagatagat aatgacacaa ttattattca gatagatcca tttaaaataa
     1441 taaccttaaa aatccttttc aaatgattag gaatgaaaaa aaggcttaga aaagtgcttt
     1501 aatctataaa gtaggaaaaa ttacagtttt caatacaatg agtacttatt tcatactaaa
     1561 aataatgcta gcataataaa ttactctaac tatatttaag taatatatct aagtcacatt
     1621 acaaaaagaa taaaacaaat ggtaacgaat gataaccaat ataatagtta agtatatcgc
     1681 aaacttattg aattagtttc aaaatgatcc ttcagctatt attcttgtag ttttactatc
     1741 tggttttaat attaaaaatt tttgtttttc ataataggcg ataggttttt ctaaagataa
     1801 tagtatttta gaattatt
//
LOCUS       DATCMF010000174         2405 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_353438, whole genome shotgun sequence.
ACCESSION   DATCMF010000174 DATCMF010000000
VERSION     DATCMF010000174.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2405)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2405)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2405
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_353438"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            379..2085
                     /locus_tag="VIL14_02205"
     CDS             379..2085
                     /locus_tag="VIL14_02205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522550.1"
                     /translation="MYNRLELGKSIVSERFPNTIDEFWFIINANMIVNSFDFVSVNNL
                     HQTTTIGIVKEVQSTFLSNQEMVSHNNNFNKSKEHDSLQKNKSNSSMDDLNTEKVVVV
                     ARVAIMGNTYAQIKGNADLLSVNFPVGASNPVRFANSKEIMFALGIPEMENPIPAGII
                     KTTNGLKVPVSLDYSYIIGPDTAHVNASGISGNKKTSYLLFLLFSAYQTIKKSEDISL
                     IIFNTKEEDLLHIHELQGNIEETTNNEYKLLDLKIEPFENVTYFLPRGKDGKPNSIYI
                     PKNYQTFSYELKDIYDRLDLLFSEIYDQHYNLSSIIDYISESWPMTDSSGKEIQNWTE
                     LSNFIGYPDFIVSHKSSLIRFLGQLQRFRKSSMFIDKKITSVYLGKKVRNLKAGEVFV
                     VDIAKISSVEEQAFIVGDVMKSIDEIYSPSYYNFEDDNEDNNIDKNTIKLEERRKPHY
                     IIIFIDEINRFIPKTLREKIDAIPEQIMKTVIAGRSRGTILFSAQQFKSQTDTRLQEN
                     IGLHVTAKIGRSELSKEPYSIIDETTKTNIVRLNKGELVMIHPAFRHPIKIIFPGYIF
                     PR"
BASE COUNT          933 a          326 c          361 g          785 t
ORIGIN      
        1 cattaatcgg atcctttact ttggttggaa caattgttag ttatttatat atgaaccgat
       61 aaatgatctg aaatttttta tattttttat taccaatctc atacttttca atgttataac
      121 agaataaagt ttattattta aaaaagtaaa atatactatc tttcatttta ttagccgcac
      181 gttaaaaata gcaattactg atttggaaaa aatttctttt cagattgtaa cttcgtttca
      241 acttagttta gttaaaacag taatagttat tttcaattta gtacatactc ttttaatgaa
      301 gaataggaaa aacaagacaa aaaaaaaata accatcattg ataataaaag agttgaaaag
      361 cgaaaagata aggcttcttt gtataatcgt cttgaactag gtaagtcaat tgtttctgaa
      421 agatttccaa atacaataga tgaattctgg tttattatca atgctaatat gattgttaat
      481 tcttttgact ttgtttctgt aaataatcta catcaaacta caactatagg aattgtaaaa
      541 gaagtacaat cgacttttct ttctaatcaa gagatggttt ctcataataa taactttaat
      601 aaaagtaaag agcatgacag cctacaaaaa aataaatcta attcatccat ggatgatctt
      661 aatacggaaa aagtagtggt agtagcgaga gtggcaataa tggggaatac atatgcacaa
      721 ataaaaggta atgcagattt actttcagtt aactttcctg tgggtgcaag taacccagtg
      781 agatttgcta attctaaaga aataatgttt gctcttggaa ttccagagat ggaaaaccct
      841 ataccagcag gaataataaa aactacaaat ggtttaaaag ttccagtttc tttggattat
      901 tcctatatta ttggtccaga taccgcccat gtaaacgcct ccggaatatc aggaaataaa
      961 aaaactagct atcttttatt tcttttattt tctgcttatc agactattaa aaaatcagaa
     1021 gatatttcct taattatttt taatactaaa gaagaggatt tactacatat tcacgaatta
     1081 caaggaaaca tagaagaaac aactaataac gaatataaac tactcgatct aaaaatagag
     1141 ccatttgaaa atgtcacgta ttttcttcca cgaggaaaag atgggaaacc taattccatt
     1201 tatattccta aaaactatca aacattctct tatgagctaa aagatatata cgatagattg
     1261 gatttattat tttctgaaat ctatgatcaa cattataatc tctcctcaat aattgactat
     1321 atttctgaat catggccgat gactgatagt tctggaaagg agatacaaaa ttggacagaa
     1381 ctatctaatt ttataggata tccagacttc atagttagtc ataaatcctc ccttattaga
     1441 tttttggggc agttgcaaag attcagaaaa tcatctatgt ttatagataa aaaaattaca
     1501 agtgtgtatc tgggaaagaa agttagaaac cttaaagctg gtgaagtctt tgtagtggat
     1561 atagcaaaaa tctcttctgt agaagaacaa gcatttattg tgggtgatgt gatgaaaagt
     1621 attgatgaga tatattctcc aagttattat aattttgaag acgataatga agataacaat
     1681 atagataaga acactataaa acttgaagaa aggagaaaac ctcactatat tataatattc
     1741 atagatgaaa ttaatagatt cattcctaaa actctcaggg aaaaaattga tgcaattcct
     1801 gaacaaataa tgaaaacagt aatagcagga agatctagag ggactatttt attttctgca
     1861 cagcaattta aaagtcaaac tgatacaaga ctacaagaga atataggatt acatgtcacg
     1921 gctaaaatag gacgatcgga attatctaaa gaaccttatt ctatcattga tgagactact
     1981 aagacaaata ttgttcgttt aaataaagga gagttggtaa tgattcatcc ggcatttaga
     2041 catccaataa aaattatatt tcctggatac atatttccaa ggtaaatata tttcatcagt
     2101 aaaagaagca aagccaataa aatacgattt gttacattat tcaaatctaa tcaatatttt
     2161 tatattgttt gtaaaagaat attaattttt agatagaaat ttatctaatt ataaaaaaag
     2221 aagatacatg aagagcttat tacttcttcg tcatgctaaa acaagagaga ataaggcttc
     2281 aatttctgat gatatgagac ccctaagtga tcgtggcaaa tatgatgtct ataaaatgag
     2341 taagttccta aaaaataaca aattaattcc tagcttgatt attagttctt ctgctaagag
     2401 agcta
//
LOCUS       DATCMF010000175         1928 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_165571, whole genome shotgun sequence.
ACCESSION   DATCMF010000175 DATCMF010000000
VERSION     DATCMF010000175.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1928)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1928)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1928
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_165571"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..305
                     /locus_tag="VIL14_02210"
     CDS             <1..305
                     /locus_tag="VIL14_02210"
                     /inference="COORDINATES: protein motif:HMM:NF016557.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA ligase"
                     /protein_id="HEY8522551.1"
                     /translation="ELIYNELKNYVIEKKHYNVNSNLKMDIWFTPKLVLEIIASEITL
                     SPLHTAAYGLIKKNFGVALRFPKYSGRIRFDKKPEDSTNTSELIELFNKQVKRNKL"
     gene            complement(739..885)
                     /locus_tag="VIL14_02215"
     CDS             complement(739..885)
                     /locus_tag="VIL14_02215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522552.1"
                     /translation="MAIKYKCLECNIVLSGEGASRHYLANPTHKLEKLPPPLKPMKNN
                     REDN"
     gene            complement(978..>1928)
                     /locus_tag="VIL14_02220"
     CDS             complement(978..>1928)
                     /locus_tag="VIL14_02220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase RNA specificity
                     domain-containing protein"
                     /protein_id="HEY8522553.1"
                     /translation="DTTITLNNAGHIMGSATVHLNISGAHNILYSGDYKYAKTQLLDS
                     AVSNYPRVETLITESTYGASSDLMPDQRVVYNNFTENINKTLTNGGKVLIPVPAVGRA
                     QEIMLVLDKEMKEGRLIEAPIYIEGMISEASAIHMSYAHYLGQEVRRSVSQGINPFQS
                     EYFTVVNGWGKRDEVLNDQNPAIIMATSGMLEGGPSVEYFKEIATKENNKMIFVSYQI
                     NGTLGRRVLDGNTNEVSMMEKNGKVKVIPLKCKTQKIDGFSGHSDFNQILNFVSRIKP
                     KRVLVNHGERTKSENTASSIYNKLGIRSSVPDNREILKLR"
BASE COUNT          656 a          324 c          277 g          671 t
ORIGIN      
        1 tagaacttat ttataatgaa ctgaaaaatt atgttattga aaagaagcat tataatgtaa
       61 atagtaattt gaaaatggat atatggttta cacctaaact agttctagaa atcatagcct
      121 ctgaaattac gctcagtcca ttacataccg ctgcttacgg tttaataaag aaaaattttg
      181 gagtagcttt aaggtttccc aaatattctg gaagaatacg atttgataaa aagccagagg
      241 attccacaaa tacaagcgaa ttgatcgaac tatttaataa gcaagtcaaa cggaataaat
      301 tatgatctct tgattttttt tatgaatatt acaataatta attcttagat atatcactaa
      361 attagaaaaa tttttttact ttttttggca aaggagttca tttactacta ttacaattcc
      421 caatctaaaa taataggata gtgtaattaa tcttattggg cgagagcatt attctaagga
      481 ctaaataaaa atgcaaataa ataattggag aaatatcaac atcggtcact ttgctagaaa
      541 tactttatca aataatatta gtgttaagat ttctctaaac tatttcataa gtgttaagcg
      601 atgaaacaca taaaaaaaat atggctaaga attgctcaga ctttgaatat ttagctatat
      661 taattagaag atatttgcag atacatattc gtcgatacat ataactatta atttcgtcga
      721 gtgaatagcg aagaaatttc aattatcttc tctattattc ttcatgggtt taagaggagg
      781 aggtaatttt tccaatttat gtgttggatt cgcaagataa tgacgagaag ccccctcacc
      841 agaaagaaca atattgcatt ctaaacattt gtattttata gccataatcc agcccagaag
      901 tatttaaaaa catacttccc taaaaagtct attgtttata tcaaaatgat aaaaaaaatg
      961 aaaaaaaata agtacaatta ccgtaatttt agaatttctc tattatcagg gactgatgat
     1021 cttataccta atttattata aattgaactt gcagtatttt ctgactttgt acgttctcca
     1081 tgattcacta atacccgctt cggttttatt ctagaaacaa aattcaatat ttggttaaaa
     1141 tcactatgac cactaaatcc atcaatcttt tgagttttac attttagtgg aataactttg
     1201 actttgccat ttttctccat catactaact tcatttgtat ttccatcaag aacacgtctc
     1261 cctaaagtgc cattgatttg gtatgataca aaaatcattt tattattttc ttttgttgca
     1321 atttctttga aatattcaac cgaaggaccg ccttccaaca tacctgaggt agccatgata
     1381 atcgctggat tctgatcatt taatacctca tccctttttc cccatccatt aactaccgta
     1441 aaatattctg attggaatgg gttgattccc tgagaaacag atctccttac ctcttggcca
     1501 agataatgtg cgtacgacat atgtatagca ctggcctctg aaatcattcc ttcaatataa
     1561 ataggtgctt caattagtct accttctttc atctctttgt ctagaactag cattatctct
     1621 tgtgcacgtc ctaccgctgg aactggaatt aagactttgc caccatttgt caatgtttta
     1681 ttaatgttct cagtaaaatt attataaact actctttgat ctggcattag atcactagag
     1741 gcgccgtatg tactttcagt aatcaatgtt tccacacgag gataattaga aacagcacta
     1801 tccaatagct gagttttagc atatttataa tctccagaat agagaatatt atgtgctcct
     1861 gaaatattaa gatgtacggt tgcgctcccc attatgtgtc cagcattatt cagtgtaatg
     1921 gtagtatc
//
LOCUS       DATCMF010000176         1799 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_551595, whole genome shotgun sequence.
ACCESSION   DATCMF010000176 DATCMF010000000
VERSION     DATCMF010000176.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1799)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1799)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1799
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_551595"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(9..>1799)
                     /locus_tag="VIL14_02225"
     CDS             complement(9..>1799)
                     /locus_tag="VIL14_02225"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018039278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HEY8522554.1"
                     /translation="VEKGDNKITIEKAIEEIKSYSENLKVNRLLIYPYSHLSSYLAPP
                     KYAFEILQELETKSRKIINEVNRAPFGWTKSFNIKVKGHPLAENFKVISDMQFPINGK
                     DATFRKEDLKQNLLDIEPVSSALKSEEKQQSLWFILDTNGVLTPLEAFKIEKNSNLKR
                     FVEYETSKRRSSDEQPPHVGLMKKMAIADYEPASDAGNMRYYPKGRLMKSLIEQFVTR
                     NVLEYGGIEVETPIMYDTKHPSMESYFNRFPARQYNIVSDNKQLFLRFAACFGQFLMA
                     KDFHITYKNLPLKLYELTRYSFRREKSGELVGLRRLRAFSMPDCHAFCKDIEQAKDEC
                     LKRFDLSLNVLNGFDIRIEDIEMAIRFTETFYNENKEFVAQISQKFGKPILVEMWKDR
                     FFYFILKWEFNYVDSQGKAAALSTDQIDVENGKRYNIEYIDEQGKRQNPIILHNSPSG
                     AIERIIYTLLEKAAKIKQQGQRPQFPIWLSHTQVRIIPIRNEHIRFAENIENILSQSH
                     IRTDIDDRTESLNKRIREAETEWIPFILVIGDKEVKSTTLVIRDRRTGKQIESKIEEL
                     IEFVRKETRDKPFMPLNLPKYLSKRPQIMV"
BASE COUNT          518 a          307 c          241 g          733 t
ORIGIN      
        1 tataattatt aaaccattat ttgtggtctt tttgaaagat atttgggtaa atttaatggc
       61 ataaacggtt tatctcttgt ttcttttctt acaaattcta ttaattcttc tatcttggat
      121 tcaatttgtt tacctgttct acgatcacgt attaccaaag tagtagattt aacttcttta
      181 tctccaataa ccaatatgaa tggaatccat tctgtttctg cttcccttat tcttttatta
      241 agagattctg ttctgtcgtc tatatctgtc cttatgtgac tttgggaaag aatattctct
      301 atattttctg caaatcgtat atgttcattt ctaataggta ttattcgaac ttgtgtatgg
      361 gataaccaaa taggaaattg aggtctttga ccttgttgtt taattttagc ggctttttct
      421 aatagcgtat aaataattct ttctatagct ccgctaggtg aattatgtaa tattattgga
      481 ttttgtcttt tgccttgctc atctatatat tcaatattgt atcgttttcc attttctaca
      541 tcgatttggt cagttgataa agctgctgcc tttccctgac tgtcaacata attaaattcc
      601 cattttaaaa taaaataaaa aaatctatcc ttccacattt caactaatat tggttttcca
      661 aatttttgcg aaatctgagc aacaaattct ttattttcat tataaaatgt ttcagtaaat
      721 cttattgcca tttctatatc ttcaattctt atatcaaatc cgtttaatac atttagagag
      781 agatcaaaac gttttaaaca ttcatctttt gcttgttcta tatctttaca aaatgcatga
      841 cagtcaggca tactaaaggc tcttaatctt cttaggccta ctagttctcc acttttttct
      901 ctacggaaac tataccttgt taactcataa agtttcaatg ggaggttttt atatgtaata
      961 tgaaaatcct tagccattaa aaattgacca aaacatgctg caaaccgtaa aaataattgt
     1021 ttattatctg atactatatt atattgtctg gcaggaaaac gattaaaata gctttccata
     1081 gatggatgtt ttgtatcata cattatggga gtttcaactt ctattccacc atattcaaga
     1141 acatttctgg ttacaaactg ttctatcaat gatttcatta accttccctt tggatagtat
     1201 ctcatattcc ctgcatcaga agcgggttca taatccgcga ttgccatttt cttcataagc
     1261 cctacatgag gaggttgttc atcggaggat cttctttttg aggtttcata ttctacaaac
     1321 cttttcaaat tactattttt ttcaatttta aatgcttcta atggtgttaa taccccattt
     1381 gtatctagaa tgaaccatag agattgttgt ttttcttccg attttaaagc cgaagataca
     1441 ggttcaatat caagcagatt ttgttttaaa tcctctttcc gaaatgtcgc gtctttaccg
     1501 ttaataggaa attgcatatc cgaaattact ttaaaatttt ctgctaatgg gtgacctttt
     1561 acttttatat tgaagctctt agtccatcca aatggagctc tattaacctc atttattatc
     1621 ttccttgatt ttgtttccaa ttcttggaga atttcaaaag catattttgg aggtgccaaa
     1681 taagaactta agtgagaata aggataaatc aacagtctat tgacttttaa attttctgag
     1741 taacttttaa tttcttctat tgctttttct atagttattt tattatctcc tttttctac
//
LOCUS       DATCMF010000177         2219 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_551728, whole genome shotgun sequence.
ACCESSION   DATCMF010000177 DATCMF010000000
VERSION     DATCMF010000177.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2219)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2219)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2219
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_551728"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(684..1703)
                     /locus_tag="VIL14_02230"
     CDS             complement(684..1703)
                     /locus_tag="VIL14_02230"
                     /inference="COORDINATES: protein motif:HMM:NF012335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase"
                     /protein_id="HEY8522555.1"
                     /translation="MRSVQVSNPNGPFEIVERKTPEPGPMQVRIKVQACGICHSDSFT
                     KEGLFPGIQYPRVPGHEVAGVIDVVGKDVATTTEWKAGQRVAVGWHGGHDRHCESCRR
                     GDFVTCRYAQIPGISYDGGYADYMIAPTEALAIIPDELSATDAAPLMCAGITTYNALR
                     NSGARPGDVVAILGIGGLGHLGVQFAAKMGFRTIAIARGKDEEELVKNLGASLYIDNR
                     SQNAVEELNKLGGAKVILATVPSGKAMSEILGGLAVNGKIVIIGASDQSIEVPPLLFI
                     QGRRSLVGWPAGTSIDSQDTLSFSVLSGVRSMNEIFPLERAAEAYELMMSGKARFRCV
                     LTTGN"
BASE COUNT          701 a          409 c          363 g          746 t
ORIGIN      
        1 ttctcttatc tttttatctt gctgctcttt tactatttta gtaataacag aatatctcta
       61 tgtatcttat ttgtttgtga tccttacttg gaacaatatc tattacatcc tcagcaataa
      121 atccaatatt ttctttttta gaagaatcat ctttgaatgc aaattttact gttttaattc
      181 attgaggata gaatatgctt gaatcaataa taacaaatgt aaaggttatt tcttagttat
      241 tgttatcatt gcatcatgaa ttctcataaa aagaggattg gaaccagagt tcaatgaggc
      301 cagtgggatt tgaacattaa tttaggacat aaagaaaatg tgtattattc tattccaaaa
      361 taacaaaagg tatcaaataa agaattccag aattgggtat aagcctttta gctcaaaatt
      421 ggtttgtaaa ttaatagata ttttattaca atgcagatag gaatatgata atatttatct
      481 gtagataccc atcttttatt gattttttta taatatttac tgaaaaagat ttactcccag
      541 agaatgaatt gatggtattt ctcaccatac atagagaatc aaacattctc tagaaaagac
      601 attgcgatag tcatgaattc aatccttcat aactgtaatt tggaattgcg agtttattcg
      661 gtaatgagta acctgtatga gctctaatta cctgttgtaa gtacacatct aaatctagct
      721 tttccactca tcattaactc ataagcttct gcggcacgtt ccaatgggaa gatctcattc
      781 atagacctta cacctgagag aacactaaat gataaagtat cttgtgaatc aattgaagta
      841 ccagcaggcc atcctaccaa tgaccgacgt ccttggataa acaaaagtgg aggaacttca
      901 attgactgat cagatgctcc aattatcaca atctttccat tgactgcaag acctccaagg
      961 atttcactca tggcttttcc acttggtact gttgcaagta tgactttggc tcctcccaat
     1021 ttgttaagtt cttcaacagc attctgcgaa cggttatcta tgtatagact tgcacccaag
     1081 tttttcacca gttcttcttc gtcctttcct cttgcaatag cgatggtcct aaaacccatc
     1141 ttggcagcaa attgaacacc tagatgtcca agtcctccta ttccaaggat ggcaactaca
     1201 tcacctggac gtgctccgct gtttctaaga gcattgtaag tagtaatacc agcacacata
     1261 agaggagcag catccgttgc tgacaactca tcagggataa ttgcaagtgc ttcagttgga
     1321 gctatcatat agtcagcata cccaccatca tatgagatac caggtatctg tgcataacga
     1381 caagtaacaa aatcaccacg gcgacaggac tcacaatgac ggtcatgacc tccatgccag
     1441 ccaacagcta ctctctgtcc ggctttccat tcagtagtag tagcaacatc tttacctact
     1501 acatcaatca cccctgcaac ctcatggcca ggaactctag ggtattggat gcctgggaat
     1561 aatccttcct tagtaaagga atcactatgg catataccac aggcttgtac cttaatacgt
     1621 acctgcattg gaccaggttc tggagtcttt cgttctacta tttcaaaagg tccattagga
     1681 ttggacacct gtactgaacg catatattat tatttttctc taaatattta tgatctttgg
     1741 ttatagaata ttttcaaaca actatttgtg tttgaaacca tgatgttcaa tcatacggat
     1801 gatgaaactc actaataatg gtcctttgat aatgtgttat ttgatacaca agagtagtaa
     1861 aataatagta tgtctaagtg ggttacatag tatttgcact attttgtggt tgattagggc
     1921 atcggctcga tttcaaatac cgtgtcaaca atcaaaggtg cacccttttt ttatatttaa
     1981 gatctgctat caaaaaatat agcctgtgta ataggtataa atataagtta tagttaatag
     2041 gatattattt tattgaatgg ttaattcttt ttgtcactaa ttaggattta caattatgcc
     2101 atcttaaatt aatccatgag ggttgcaaag atttgattat aatctattcc aattgatcta
     2161 tcatgttgat aaatatattt tatttgcgga gttgtaaaaa taaaaaatta ttaaagtag
//
LOCUS       DATCMF010000178         1549 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_626813, whole genome shotgun sequence.
ACCESSION   DATCMF010000178 DATCMF010000000
VERSION     DATCMF010000178.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1549)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1549)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1549
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_626813"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            194..748
                     /locus_tag="VIL14_02235"
     CDS             194..748
                     /locus_tag="VIL14_02235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522556.1"
                     /translation="MKLKNKGTIKIGQIFLFAFIGVVSYFTIFSTISFAQTQDEDFNV
                     IVTFFDITEDTGDVITFLNSDGFTKAKIYTPLKSMKMGNTTELQFNLTAKQVGMGEKF
                     RVCALLVKDNGIICKVGENSVAERPEIIDFRLASDEIVEIDVPNISVQELDNSNEDKD
                     NSNEDKDNEVESNDKNNEDDEDTT"
     gene            complement(856..>1549)
                     /locus_tag="VIL14_02240"
     CDS             complement(856..>1549)
                     /locus_tag="VIL14_02240"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FAD/NAD(P)-binding oxidoreductase"
                     /protein_id="HEY8522557.1"
                     /translation="PPAPYESALIIDQIIRNFERRNQIDIDIYFPSTLPLPVAGEQPN
                     SKLIFMLKKQNINMFPNYSLKKVHNHNLEFYNGQKKEYDILVAIPFHLPPLVLKKSGL
                     IESKSNWISVDKFTLETRFQDVFAIGDVTEIKINKTIAVPKAGIFAEGQARSVASQII
                     HKISNGSQESPIIEFDGKGFCFMEAGNGKAGFIDTDFYNSNGAITILKEPSTIYYKKK
                     INFEKQRIKEWL"
BASE COUNT          544 a          198 c          239 g          568 t
ORIGIN      
        1 agagaatatt taatgatatg ttttctttga tataaaggtg attactacta gtaaagttat
       61 tagtaaactt atatgtataa tattatagtt ttaaaataaa gaaaaagttt cttaatatta
      121 tatagattga gcttatataa tataatttga gaaacttcaa ttattaaaga gtgctatatt
      181 aactggtatt tctatgaaac taaaaaataa aggaactata aaaataggtc aaatatttct
      241 atttgcattt attggagtcg tttcctattt tacaattttt tcaacgattt cttttgctca
      301 aactcaagat gaagatttca atgtcatagt aacttttttt gatattactg aggatactgg
      361 tgatgttata acgtttctaa attctgatgg ctttacaaaa gccaagatat acacccctct
      421 caaaagcatg aaaatgggaa atacgacaga acttcaattt aatcttactg ctaaacaagt
      481 aggtatggga gaaaaattta gagtatgtgc tttattagtt aaagataatg ggataatatg
      541 caaagtagga gaaaattctg ttgcagaaag gcctgaaata atagacttta gactagcaag
      601 tgatgaaatt gtggaaattg atgtgccaaa tatatcagtc caagagttgg acaatagtaa
      661 tgaagacaag gacaatagta atgaagacaa ggacaatgaa gttgaatcta acgataaaaa
      721 taacgaggac gatgaagata caacataaca ttctctgtga aacaagttat ttgttttata
      781 tatgagatac ataataatct tatcataatt ttctttttgt ttttatatat atatatatat
      841 atacgattta ctcacctata accattcttt aattctttgt ttctcaaaat taattttttt
      901 cttgtaataa atagtggatg gttcttttaa aatcgtaatg gcaccattgc tattgtaaaa
      961 atcagtatca ataaatcctg ctttcccatt tcctgcctcc ataaaacaaa atcctttacc
     1021 atcgaattct attataggag attcttgaga gccattactt attttatgga taatttgaga
     1081 agcaacagat cttgcctgac cttctgcgaa aataccggct tttggcacag ctatagtctt
     1141 gtttatttta atctcggtga catctcctat agcaaataca tcttgaaatc ttgtttctaa
     1201 tgtaaatttg tcgactgata tccaattact ttttgattct attaaccctg atttttttag
     1261 cacaagaggt ggtaaatgaa aggggattgc aaccaagata tcgtattctt ttttttgacc
     1321 attataaaat tctaaattat ggttatgaac ttttttcagt gaatagtttg gaaacatatt
     1381 tatattttgt ttttttaaca taaaaattaa ttttgaattt ggttgctctc cagcaacagg
     1441 taaaggtaat gtagatggaa aataaatatc tatatctatt tgatttcttc tctcaaagtt
     1501 acgtataatt tgatctatta tgagagctga ttcatatgga gctggtgga
//
LOCUS       DATCMF010000179         1591 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_354453, whole genome shotgun sequence.
ACCESSION   DATCMF010000179 DATCMF010000000
VERSION     DATCMF010000179.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1591)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1591)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1591
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_354453"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..466
                     /locus_tag="VIL14_02245"
     CDS             <1..466
                     /locus_tag="VIL14_02245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PqqD family peptide modification chaperone"
                     /protein_id="HEY8522558.1"
                     /translation="IKMTMTTRGCPLHNTMVNDVKKYVSKINGIGTINVDIVWDPPWS
                     IDKMDPKARESLGFGKPKLRFQIDYEKALPKKIGSFIKSEDGSLILLNKDEKSFMVND
                     AIVQFWESCDGTKTINQLTDYFSEKLGIPRQQVEQEMVQLLEQLFDSNLIEV"
     gene            complement(501..914)
                     /locus_tag="VIL14_02250"
     CDS             complement(501..914)
                     /locus_tag="VIL14_02250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522559.1"
                     /translation="METKKKIKNKSDNKFDKEIIPSEKWLVSFKNHNNTSSVIPRVII
                     RQFYAQGYYEAYDIIRTYAEKLALEIIWFKEKRNCSHYLLSKKFPQLESICIYCNRIF
                     NELEPIPCLQQDCLHIFCSTNCLENHIRLKHKDTK"
     gene            complement(927..>1591)
                     /locus_tag="VIL14_02255"
     CDS             complement(927..>1591)
                     /locus_tag="VIL14_02255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="His/Gly/Thr/Pro-type tRNA ligase C-terminal
                     domain-containing protein"
                     /protein_id="HEY8522560.1"
                     /translation="YLALLYEFYEKTGIDMNQTRLRKLSDQEKAFYATIAFDFELKTS
                     VGWLELVACNYRSNYDLSQHSKISKEKMEIMDPVTNEKVLPHVFELSLGIDRSIYSIL
                     EHCFAEDHENNRVVLKLKPYLAPLLAAILPLVKKPELEEIAKNIYYDLKKDFDMYYDG
                     SGSIGRRYRRLEEIGVPFAITVDHDTVKDSTVTIRYRDTMEQKRIQIKELKGFFEKTL
                     KP"
BASE COUNT          531 a          249 c          233 g          578 t
ORIGIN      
        1 tattaaaatg acaatgacaa ctcgaggatg ccctttacat aatactatgg ttaatgatgt
       61 aaaaaaatat gtcagtaaaa ttaatggaat tggtactatt aatgttgata ttgtatggga
      121 tccgccttgg tcaatcgata aaatggatcc taaagctcga gaatcattag gatttggaaa
      181 acccaaacta agatttcaga tagattatga gaaagccctc ccaaaaaaaa taggctcatt
      241 tataaaatca gaggacgggt cgctaatcct actgaataaa gatgaaaaaa gtttcatggt
      301 caatgatgca atagttcaat tttgggaatc gtgtgatgga acaaaaacta taaatcaact
      361 tacagattat ttttctgaaa aattaggaat acctcgacaa caagtagaac aagaaatggt
      421 tcaactttta gaacaattat ttgattccaa tctcattgaa gtataaattt tattttatac
      481 tagacaaagt ataacacttt ctattttgta tctttatgtt tcaatctgat atgattttct
      541 aaacaatttg tagagcaaaa tatatgcaaa caatcttgct gtaggcatgg aataggttcc
      601 aactcattaa agattctatt acaatagata caaatggatt ctaattgagg aaacttttta
      661 gataaaagat aatgtgaaca atttcgcttt tctttaaacc aaattatttc gagagctaat
      721 ttttctgcat aggttcttat aatatcatag gcttcataat acccttgagc ataaaattga
      781 cgaattatta ctcttggaat tacactactt gtattattgt ggttcttaaa tgatacaagc
      841 catttttctg aaggtataat ttccttgtcg aatttattat cagatttatt ttttattttt
      901 tttttagttt ccattgatga taataattat ggctttagag tcttttcaaa aaaacctttt
      961 agctctttga tttggatacg tttttgctcc attgtatctc tatatcgaat agttacagtg
     1021 ctatccttaa ctgtatcatg atcaactgtt attgcaaatg gaaccccaat ttcttctaat
     1081 cttctatatc ttcttccgat agatccagat ccatcataat acatatcaaa atcttttttc
     1141 agatcgtagt aaatattttt tgcgatttct tctaattctg gtttttttac taatggaaga
     1201 atcgccgcca ataggggtgc aagataaggt ttcaacttta aaactactct attattttcg
     1261 tggtcttccg caaagcaatg ctctaaaatt gaatatatac tcctatctat ccctaacgaa
     1321 agctcgaata catgaggtaa aactttttca ttcgtgactg gatccattat ttccattttt
     1381 tctttgctga ttttagaatg ttgagatagg tcataattag atctgtaatt gcatgctacc
     1441 agttctaacc agcctacact agtttttaac tcaaaatcga aagcaattgt tgcataaaaa
     1501 gctttttcct gatcagataa ttttctaagg cgtgtttgat tcatatcgat ccctgtcttt
     1561 tcgtaaaatt catataaaag agctaaataa t
//
LOCUS       DATCMF010000180         3023 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_38331, whole genome shotgun sequence.
ACCESSION   DATCMF010000180 DATCMF010000000
VERSION     DATCMF010000180.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3023)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3023)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3023
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38331"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            501..1136
                     /locus_tag="VIL14_02260"
     CDS             501..1136
                     /locus_tag="VIL14_02260"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009190 - cyclic nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0035556 - intracellular signal transduction
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HEY8522561.1"
                     /translation="MVSKKKLYYYYYLVIDLEGSSSQHIPLDIQIEKLEKLRLCVNKI
                     LNPKSERQHHRKKIRYINSTGDGYFIIFDIGEDALKFSIDLHKYLNVHNTKIRNNKIY
                     NAKEIDSKTITVNTGISCGISKPIKQIDGQIAYWGSDVILAHRIVEFAKGGYILCSSD
                     VYKNMKNIHFGKFIDLKCSTNFKHNLKTDIYLFYNKEDKEKFENINIHLLR"
     gene            1498..1974
                     /locus_tag="VIL14_02265"
     CDS             1498..1974
                     /locus_tag="VIL14_02265"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEY8522562.1"
                     /translation="MSSFNTHKIKFSKILIPIDGSTSSLTAATYAIDFATTYEAEIIL
                     LSVVPSQIKHGDSSGVFGMVTPHHLDQYKKEAQKWFNQIIDDSKNQGYNIHKITTDVI
                     TTPMSIVGAIVDYAEKEDVDIIILGKSGSTGFKRILLGSTASGVVTYAHCHVFVVR"
     gene            complement(1953..2753)
                     /locus_tag="VIL14_02270"
     CDS             complement(1953..2753)
                     /locus_tag="VIL14_02270"
                     /inference="COORDINATES: protein motif:HMM:NF014038.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CYTH domain-containing protein"
                     /protein_id="HEY8522563.1"
                     /translation="MSEVETALIILSKDYDQLFNVIDELISRKGYRTKKNGIQIIHDT
                     YFDTKDEILQKNEIALRIRIIDEQVSKITLKILQNTTENYSERIEIEDIYSTEMLNQI
                     ILKIKSYLNLNIFNFPLKYYNNDPKLNLINLGFKKILNKQTQRKIFNAVNKSSNQTEF
                     EFVFDTTTYIFDNNNITNLELEIESKLSKNNKTILKDFVRELRLNQNLFKYWPYNKLL
                     TGKVIEILLDNNELIKNKDYDDKKILTLSGLDKIELFIESRNHLTTKT"
BASE COUNT         1172 a          338 c          371 g         1142 t
ORIGIN      
        1 acataaaata ttgtatatga tgttaaacta ttccaattca caaggtaaat gaggcttaag
       61 aacatctctt aaaatgtgat ctgcgtaaaa gctttgtaca ggatataaag tctcgataaa
      121 atgtagctat gaagatgaac taataataac aggttaaaga ataggatagg gagaagaaat
      181 taatcttaaa tagaaataaa ctcagaactc atagtttttc tcaaatatgt aaaagaaata
      241 tagtgaatat attgtactaa tacgataata ctataataaa tgagctattt gtcaagatat
      301 taatttacca tattattata aaataatatg tgataattaa tgaaataatg attcaattca
      361 aaatatacta aaaatataat aaattgcgtt ataattgaat tttattgact gaggtattct
      421 caaagtatta gtaggaataa tataaatctt aacaagataa taagaaaata tatactctta
      481 ctttgtattt gtaattctat atggtttcaa aaaagaaatt atactattat tattatcttg
      541 ttattgattt agaaggttct tcatctcaac atattccatt agatattcaa attgagaaac
      601 tagaaaaatt gaggctttgt gttaataaaa ttttaaaccc caaatctgag agacaacatc
      661 accgaaagaa aataagatat ataaactcaa caggtgatgg ttattttatt atttttgata
      721 taggagaaga tgctttaaaa ttttcaattg atcttcacaa atacttaaat gtacacaata
      781 caaagattag aaataataaa atttataacg caaaagaaat tgactcaaaa acaattacag
      841 ttaatactgg gatttcttgt ggaattagta aacccattaa acaaatagat ggacaaatag
      901 cttattgggg atcagatgtt atattagctc atagaattgt tgaatttgct aagggaggtt
      961 atatattgtg tagttctgat gtctacaaga atatgaaaaa tattcatttt ggtaaattta
     1021 tcgatcttaa atgttcaaca aattttaaac ataatttaaa aacagatata tatttatttt
     1081 ataataaaga agataaagaa aagtttgaga atataaatat tcatcttcta aggtgaatta
     1141 gtattttttc agataacttt taacaaaaca atactaatat gacatattta aatattttat
     1201 tgataaggtt ctaaagaata tcatcaactg attttgacag aaatatatat agagttaaga
     1261 acaataataa acatctaaaa tcaaaaatct atttactctt gtcaatacct aacttgttac
     1321 taatctattg gttttttatt gttatttaaa ttaaaatata taaatattgt taaaatagtt
     1381 aataaaatat attatgaaat tatattataa tgactagatt agtctaaact taaatcataa
     1441 ataaagaata tgaaaatatt aatagttgaa aggtttttta ttattttgat cacttaattg
     1501 tcaagtttca atacacacaa aataaaattt tcaaaaatct taattccaat tgatggatcc
     1561 acctcttcat tgactgctgc cacatatgca attgattttg caaccactta tgaggctgaa
     1621 ataatccttt tatctgtagt tccatcacaa ataaaacacg gagattcatc aggagtcttt
     1681 ggaatggtta ctccccatca ccttgatcag tataaaaaag aagcacaaaa atggtttaac
     1741 caaataattg atgacagtaa aaatcaaggt tataatatcc ataagattac cactgatgtt
     1801 ataacaactc ccatgtctat agttggagca atagttgatt atgctgaaaa agaagatgtt
     1861 gatattatta tattaggaaa gagtggaagc actggattta aaagaatatt attgggtagt
     1921 actgcatcgg gagtagtgac atatgctcat tgtcatgttt ttgtagtaag gtgatttctt
     1981 gattctataa ataattcaat cttgtctagt cctgataatg tcaaaatctt tttatcatca
     2041 taatctttat tctttattaa ttcattgtta tctaataata tctctataac ttttcctgtt
     2101 agcaatttat tataaggcca atatttgaat aaattttgat taagtcttaa ttccctaaca
     2161 aaatctttga gtattgtctt gttatttttg gataattttg attctatttc caattctaaa
     2221 ttcgttatat tattattatc aaagatatag gtagtggtat caaatacaaa ttcaaattct
     2281 gtttgattag aacttttgtt gacggcattg aaaatttttc tctgagtttg tttatttaga
     2341 atttttttaa aacctaaatt tattaaattt agtttaggat cattattata atattttaaa
     2401 gggaaattaa agatatttaa attgaggtat gactttattt ttaaaataat ttgattgagc
     2461 atttctgttg aataaatatc ttctatctct attctttcag aataattttc tgtagtattt
     2521 tgtaatattt tcaaagtaat tttagaaact tgttcatcaa taattctaat acgtaatgca
     2581 atttcatttt tttgtaaaat ttcatctttt gtatcaaagt atgtatcatg tattatttga
     2641 attccattct ttttagttct atatccttta cgagagatca attcatctat tacattaaat
     2701 agttgatcat aatcttttga aagaattata agcgcagttt caacttctga caattgttta
     2761 ttggtatatt ttgttcaact atatttaatt aacacccaaa aaaacgatat tattgtttaa
     2821 aaagtttatt atttgtatta catttttata ataaaaaacc atattatact tgaacttttt
     2881 ctaaaactaa taagcttatt cctgtgaata caaacggaga aatactcaac taattttgac
     2941 acaattttgt tgtaacaaat acagcaaaat aataccttaa taataatcct tattaaaaaa
     3001 tataatttat aataatttca aat
//
LOCUS       DATCMF010000181         2177 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_552776, whole genome shotgun sequence.
ACCESSION   DATCMF010000181 DATCMF010000000
VERSION     DATCMF010000181.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2177)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2177)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2177
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_552776"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..947
                     /locus_tag="VIL14_02275"
     CDS             <1..947
                     /locus_tag="VIL14_02275"
                     /inference="COORDINATES: protein motif:HMM:NF012428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEY8522564.1"
                     /translation="TGAEATMTAIRLSRAFTRRKKILKFNGGYHGAYDYVLVKAGSGA
                     ASIPSSEGSLSEISEETLIVQFNDFEELEKIIEKESENISCLIMEPVLANYGLLIPEK
                     NYLTEIRKITKKYGILLIFDEVITGFRLALGGCSEFFGITPDIATFSKSFGNGFPIAA
                     ICGKKDIMDQLSPSGNVYQASTYAGNPVSVTAATTTVESLLKNKNKVYPTIARLCDTL
                     VLGIKDRVNDFADHYTINSIGSLFQLFFTKETVSTPLDILKSDKNLFETLFWDLLKKN
                     IFIPPSLYETCFISYSHSDEDIEKTIECYSDSLNKYTK"
     gene            949..1902
                     /gene="hemC"
                     /locus_tag="VIL14_02280"
     CDS             949..1902
                     /gene="hemC"
                     /locus_tag="VIL14_02280"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: protein motif:HMM:TIGR00212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004418 - hydroxymethylbilane synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HEY8522565.1"
                     /translation="MTPKLRIGTRGSKLALAQTQIVIKSLCEQNKHLEYEITPIKTRG
                     DLDNSKPLFYLDKKGIFEKEINESVVKGDVDFAIHSVKDVPATIHKDLVIASIPQRES
                     VNDVLISKSRKRLNELPNGSIIGTSSLRRAIQIISFRNDFKVIPLRGNIDTRIEKALK
                     GEYDAIILAEAGLKRLGKEQYISERFDPKKFLPAAGQGALALVCKKTDTQLVEFLHKI
                     EHAPSRISINAERSFISKIEGGCRFPIAAYANLSSKNHKINFYAKIFSSDGLEHIAIK
                     KIGDYDKPEMVGNMVASYLIKNGALRLAEGWDKSLNEWNKK"
     gene            1883..>2177
                     /locus_tag="VIL14_02285"
     CDS             1883..>2177
                     /locus_tag="VIL14_02285"
                     /inference="COORDINATES: protein motif:HMM:NF012799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HEY8522566.1"
                     /translation="MNGIKNKKYGKVYICGAGPGDPSLITVKCWDLIKNSDIILYDRL
                     VSNGILKLIPEDTPKVYVGRSSGDPTINQSKTNQIMLQHALTGKQVLRLKGGDP"
BASE COUNT          808 a          324 c          378 g          667 t
ORIGIN      
        1 atactggggc tgaagcaaca atgactgcaa tacgattaag tcgagctttt actagacgaa
       61 agaaaatact taagtttaat ggaggatacc atggagcata tgattatgtc ttagtaaaag
      121 ctggatcagg agctgcatct attccatcat ctgagggatc actttctgaa atttcagaag
      181 aaactctcat agtgcaattt aatgactttg aagaattaga aaaaatcatt gaaaaagaat
      241 cagaaaatat tagttgttta ataatggaac ctgtcttggc taactatggt cttttaattc
      301 cagaaaaaaa ttacttgacg gaaattagaa aaattacaaa aaaatatggc attctgctaa
      361 tctttgatga agttataact ggatttaggt tagctctagg tggttgcagc gaattttttg
      421 gcataacgcc tgatattgct actttctcta aatcttttgg aaatggattt ccaatagctg
      481 ctatatgtgg gaagaaagac ataatggatc aactatcacc atctggaaat gtctatcaag
      541 caagtacata tgcaggaaat cctgtgtctg taacagcagc aaccacaact gtcgaaagcc
      601 tcttgaagaa caaaaataaa gtttatccaa cgatagcaag gttatgcgat actttagttc
      661 tgggaattaa agatcgtgtt aacgactttg ctgatcatta taccataaat tctattggat
      721 ctctctttca attatttttt accaaagaaa cagtatctac tcctcttgac attttaaagt
      781 cggataaaaa cttgttcgaa actctatttt gggatttact aaaaaaaaat atttttatac
      841 ctccttctct ctatgaaaca tgttttattt cttattctca ttctgatgaa gatatagaaa
      901 aaactattga atgttattct gattctttaa ataaatatac taaatgaaat gacgccaaaa
      961 ctacgtatag gtacaagagg aagtaaatta gctctagcac agacacaaat tgtcattaaa
     1021 tctctttgtg aacaaaataa acatttagag tatgaaatta ctccaatcaa gaccaggggg
     1081 gatttagaca actctaaacc attattttat ttggataaaa agggaatctt tgaaaaagaa
     1141 ataaatgaat cagtggttaa aggggatgtt gattttgcta ttcatagtgt taaagatgtt
     1201 ccagctacaa ttcataagga tttagtcata gcgtctattc ctcaaagaga atcagtaaat
     1261 gatgtgctta taagtaaaag tagaaaaaga ttaaatgaac tccctaacgg ttctattata
     1321 ggaacaagta gcttacgaag agcaatacaa attatttctt ttagaaatga tttcaaggtc
     1381 ataccattaa gaggaaatat cgatactaga attgaaaaag ccttaaaagg agaatatgat
     1441 gcaattattc tagctgaagc aggattgaaa agattgggaa aagaacaata cattagtgaa
     1501 agatttgatc ctaaaaaatt tttaccagct gctggacaag gagccctagc attagtttgt
     1561 aaaaaaactg atacacaact tgtcgaattt cttcacaaaa ttgagcatgc tccctccaga
     1621 atctcaatta atgctgaaag atcttttatc tcaaaaattg aaggtggttg tagatttccc
     1681 atagcagcat acgctaattt gtcttccaaa aatcacaaaa ttaattttta tgctaaaata
     1741 ttctcttctg atggtttgga acatattgca ataaaaaaaa ttggtgatta tgataaacca
     1801 gaaatggtgg gtaacatggt tgcgagttat ctgataaaaa atggagcttt aaggttagct
     1861 gaaggttggg ataaatctct aaatgaatgg aataaaaaat aaaaaatatg gtaaagtata
     1921 catctgtgga gcaggacctg gtgacccatc actaattacc gtaaaatgtt gggatttaat
     1981 aaaaaactct gatataattc tgtatgatcg cttagttagt aatggcattc ttaaattaat
     2041 tccagaagat acaccaaaag tatatgtagg ccgttcttca ggtgatccca ccattaatca
     2101 atccaaaact aatcaaatta tgttacaaca tgcattaaca ggaaaacaag ttttaagact
     2161 caaaggagga gatccct
//
LOCUS       DATCMF010000182         2533 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_38666, whole genome shotgun sequence.
ACCESSION   DATCMF010000182 DATCMF010000000
VERSION     DATCMF010000182.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2533)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2533)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2533
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38666"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1061
                     /locus_tag="VIL14_02290"
     CDS             <1..1061
                     /locus_tag="VIL14_02290"
                     /inference="COORDINATES: protein motif:HMM:NF018656.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="formate--phosphoribosylaminoimidazolecarboxamide
                     ligase"
                     /protein_id="HEY8522567.1"
                     /translation="LKMLSNVLDIKEHVISTLGSHCSLQVLKGAKDEGFKTLLICEKK
                     RASLYKRFNFIDELYFIDTFRDLLSKEIQNELIDKRILLIPHGTLISNLKFDELEKIN
                     IPIFGNKWILRWEADRVLKQKLMNDSHFNTPLQINKKNEIKNLCIVKLHGAAGGKGYF
                     LAWDKQSFDEGCQKLIDQKVIKSEKELYIQEYVLGVPIFLQFFYSPLKDEVELLGIDR
                     RYESDIDGIGRIPSNIQIKLNLEPSYNVIGNFPLVLRESLLQEVFSLAENFAKKTKEL
                     VAPGIPGPFCLEGVYDKNGKFFIFEFSARIVAGTNLFINGSPYSDLLYNEPMSMGRRI
                     SREIKEAIKLNRLDAIIT"
     gene            complement(1073..1519)
                     /locus_tag="VIL14_02295"
     CDS             complement(1073..1519)
                     /locus_tag="VIL14_02295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HEAT repeat domain-containing protein"
                     /protein_id="HEY8522568.1"
                     /translation="MEKEFHNKNIHFFSKLSVHHDPVIRTRAICIIAELGGENAVETI
                     SKALKEDVDELVRHEAAFSLGQLGFTNAIKPLSDAVEKDPSIFVRHEAAIALGVIGSE
                     DARSILLSALNDPSEEVKKSAIVALSNLDYILNYKKINKFTRMTGG"
     gene            1654..2115
                     /locus_tag="VIL14_02300"
     CDS             1654..2115
                     /locus_tag="VIL14_02300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522569.1"
                     /translation="MRIRYWHLTISEILNARYPIDKVNHWEIKCLYGDHEHFGVFWYK
                     YGTPFDKEPVHGICFYYNEIPENIIKELTNYLVAKFSGKILRRQSRVFLEGSKEINDS
                     SNIGQLANEISLKFSIPVEITLEFEKVTKEEVDDNSFNFPQKKALPIVGID"
     gene            complement(2161..>2533)
                     /locus_tag="VIL14_02305"
     CDS             complement(2161..>2533)
                     /locus_tag="VIL14_02305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY8522570.1"
                     /translation="MVVDDERDILSILKRGLESKNRFQVDTFMDAESALESLKENSDD
                     YYDLVLTDIRMPKINGFELYRRIKESNPHMKIVFITAFEINKDEFSKVIPSVDVIDFI
                     SKPVSMSTLITKLNSILNHSN"
BASE COUNT          896 a          373 c          395 g          869 t
ORIGIN      
        1 atttgaaaat gttgtcaaat gtattagata taaaagagca cgttattagc acacttgggt
       61 ctcattgttc attacaagtg ctaaaagggg ccaaagatga aggttttaag acattgctaa
      121 tatgcgaaaa aaaaagggca agtctatata aaaggtttaa ttttatcgat gaattatatt
      181 ttatagatac ttttagagat ttattaagca aagagattca aaatgaacta atagataaaa
      241 gaatacttct aattccacat ggtacactaa tatcaaacct gaaatttgat gagttagaaa
      301 aaatcaatat accaatattt ggtaacaaat ggattttaag atgggaagct gatagagtat
      361 taaaacaaaa attaatgaat gattcccatt ttaatacacc actacaaatt aataaaaaaa
      421 atgaaattaa aaatttatgt atagttaagt tacatggtgc tgcaggtggt aaaggctatt
      481 ttcttgcttg ggataaacaa agttttgatg aaggatgtca aaagttaatt gatcaaaaag
      541 taataaaatc tgaaaaagag ttatatattc aagaatatgt attaggtgta ccaatatttt
      601 tacagttttt ttattctcct ttaaaagacg aagtcgaatt attaggcatc gatagacgat
      661 atgaaagtga cattgatggt attgggagaa taccgtctaa tattcaaatt aaactaaatc
      721 ttgagccttc ttataatgtt attggtaatt ttccgctggt tcttcgagag tcactattac
      781 aagaagtatt ttcattggct gaaaattttg ctaaaaaaac aaaagaattg gttgctcctg
      841 gaatccctgg tcctttctgt ttagaaggag tgtatgacaa aaatggtaaa ttttttatat
      901 ttgaattttc tgctagaatc gtagccggta ctaatctctt tatcaatgga tcaccgtatt
      961 cagatctttt atataatgaa cctatgagta tgggaagacg aataagtaga gaaattaaag
     1021 aagcaattaa attaaataga ttagacgcta ttatcacttg attggacatt gattatcctc
     1081 cagtcattct agtaaatttg tttatttttt tgtaattcaa tatgtaatct aagtttgata
     1141 aagcaacaat agcggacttt tttacttctt cacttggatc atttaatgcg gacaacaata
     1201 tcgatctagc atcctctgag cctatcacac ccaaagcaat agcagcttca tgtcgaacaa
     1261 aaatactcgg gtctttctct actgcatcag ataatggctt tattgcattt gtaaatccta
     1321 actgtcctag tgaaaaagca gcctcgtgtc ttactaattc gtcaacatct tcctttaatg
     1381 ctttacttat ggtttcaact gcattctctc cgccaagttc agctataata caaatagcgc
     1441 gagttcgaat aacaggatca tgatggaccg ataatttact aaaaaagtga atatttttat
     1501 tgtgaaattc tttttccatt tcttctatta actccaacct ctcgtatttt ttattgtaat
     1561 tactcttcac agttaatttg gtcttaaatt tttaatctta atcttcatat taatctttca
     1621 taagttatat attcgaaaac attagatgtt ttcatgcgga taagatattg gcatcttact
     1681 atatctgaaa ttttaaatgc aagataccct attgataagg taaaccattg ggagataaag
     1741 tgtctatatg gagaccatga gcattttggt gttttctggt acaagtatgg aactcctttc
     1801 gataaagagc ctgtccatgg aatttgtttt tactacaacg aaatcccaga aaatataatt
     1861 aaagagttaa cgaattatct cgtagcaaaa tttagtggga aaattttacg taggcaatca
     1921 agagtatttc ttgaggggtc aaaagaaatt aatgactctt ctaatatcgg tcaactagca
     1981 aacgagatta gtttaaagtt ttcaattcct gtcgaaataa cattagaatt tgaaaaagtt
     2041 acaaaagaag aggtagacga taacagtttt aattttcctc agaaaaaggc attacctata
     2101 gttggaattg attgattaga gattaataat agtaaaccac aactactaat tcttaaaacc
     2161 tcagttacta tgattcaaaa tcgaatttaa ttttgtaatt aaagtagaca tgctaacagg
     2221 tttgcttata aagtcgataa catctacaga aggaataact ttactgaatt cgtctttatt
     2281 tatttcaaag gcagttataa atactatttt catatgagga ttactttcct taattcgtct
     2341 atataattcg aatccattaa tcttaggcat tctaatatct gtaagaacca aatcataata
     2401 atcatctgaa ttctccttca gcgattccaa agctgattct gcatccatga acgtgtcaac
     2461 ttgaaagcgg ttcttagatt caagtcctct ttttaaaata gataaaatat ctctttcatc
     2521 atcaacaacc att
//
LOCUS       DATCMF010000183         1650 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_354959, whole genome shotgun sequence.
ACCESSION   DATCMF010000183 DATCMF010000000
VERSION     DATCMF010000183.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1650)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1650)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1650
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_354959"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            13..192
                     /locus_tag="VIL14_02310"
     CDS             13..192
                     /locus_tag="VIL14_02310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522571.1"
                     /translation="MGKIAKKGRLFLGKRIGPKSARRARKPLSEDWITGNIPNRHYVN
                     KRRNRKIIIRKNNFN"
     gene            278..>1650
                     /locus_tag="VIL14_02315"
     CDS             278..>1650
                     /locus_tag="VIL14_02315"
                     /inference="COORDINATES: protein motif:HMM:NF016724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HEY8522572.1"
                     /translation="MKLINYFPLKKIRNNQGKVLDEIEEAIKSNKKYIFLEAPTGFGK
                     SPIAITLASYLGSSHICTSTKDLQNQYSKDFNFIKEGKGKRNFPCILKENEGVHETCE
                     YGPCQKQEDFDCLYKTRLSDYKINRLGTKFEHIDIGQFEKLKYIKKNNEQIRFENLEW
                     EPCRYFHQKWISTKASHAIYNYKYFLSDLYFSNIISKRELLVFDEVHNIESEVSNFKS
                     FIINSENITRLFPKLQLPNRKEEEIETWIEFCEYYKETLLDFMEEAELAIENNLLKEP
                     FTEKNLIDCINREKNLDYVLTDMKTNKNNWLVTNIDRKSKDLIRKITLTPLDISYYFK
                     EILDVSNYGLFMSATILNKEYLCKITGLSQDEIKFIRVKHSDFPKENRPIHLMNIAWL
                     NSRNILDNLPIIAKTVNNIMSIHKNEKGIIHTTSYFQLEYIKNNLNKENLQRLIESGP
                     NTDRIET"
BASE COUNT          691 a          199 c          257 g          503 t
ORIGIN      
        1 attacttagg caatgggaaa aatagcaaaa aagggacgtc tttttttagg aaaaagaatt
       61 gggcctaagt cagcacggag agcacgaaaa cctttaagtg aagattggat tactggtaat
      121 attcctaata gacattatgt aaacaagaga agaaatagaa aaattattat tagaaaaaat
      181 aatttcaatt aatgcattat aatgacgaat ttctaaattg tacaaaaacc taataaaagt
      241 acaacctata aaataagtat gaatttgcga tgacattatg aaattaataa actattttcc
      301 tttaaaaaaa ataaggaata atcaaggaaa agttttagat gaaatcgaag aagctataaa
      361 gagcaataaa aaatatattt ttcttgaggc gcctactggc tttgggaaaa gtcctattgc
      421 aataactttg gctagctatt taggaagctc tcatatatgt acctctacaa aagatcttca
      481 aaatcaatat tccaaggatt ttaatttcat taaagaagga aaaggtaaaa gaaatttccc
      541 gtgtatatta aaagaaaatg aaggagtaca tgaaacatgt gaatatggac catgtcagaa
      601 acaagaagat tttgattgcc tctataaaac aagactctcc gattataaga taaatagatt
      661 aggaacgaaa ttcgagcata ttgatattgg acaatttgaa aaattgaaat acataaaaaa
      721 aaataatgaa caaatacgat ttgaaaattt ggaatgggag ccatgtagat atttccatca
      781 aaaatggatt tctaccaaag cttcacatgc aatttataat tacaagtact ttctctcaga
      841 tctttatttc tctaatataa tttcaaaaag agaattactc gtatttgatg aagtgcataa
      901 tattgaatca gaagtttcta atttcaagag ttttataatt aatagcgaga atattacacg
      961 actatttcct aagcttcaat taccaaatag aaaggaagaa gaaatagaaa catggattga
     1021 attttgtgaa tattataaag agactctcct agattttatg gaagaggcag aacttgctat
     1081 agaaaataat ttgctaaagg agccttttac tgaaaaaaat ttaattgatt gtattaatag
     1141 ggaaaagaac cttgattatg tccttacgga tatgaaaact aataagaata attggctggt
     1201 aacgaatata gatcgtaaat ccaaagattt gattagaaag ataactctta ctcctttgga
     1261 tatatcttat tactttaaag aaattctcga tgtaagtaat tatggattat ttatgagtgc
     1321 tactatttta aataaagagt atttatgtaa aatcacaggt ttatcgcaag atgaaatcaa
     1381 gtttattcgg gtaaaacact cagattttcc caaagaaaat agacccattc atttaatgaa
     1441 tatcgcatgg ttaaatagta gaaacatatt agataatctt ccgattattg ctaaaacggt
     1501 aaataatata atgagtatac acaaaaatga aaaaggaatt attcatacta catcctattt
     1561 ccaattagaa tatattaaaa ataatttaaa taaggaaaat ttacaacgtc tcatagaaag
     1621 tgggcctaat actgatagaa tagaaacatt
//
LOCUS       DATCMF010000184         2032 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_39129, whole genome shotgun sequence.
ACCESSION   DATCMF010000184 DATCMF010000000
VERSION     DATCMF010000184.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2032)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2032)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2032
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_39129"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..255
                     /locus_tag="VIL14_02320"
     CDS             <1..255
                     /locus_tag="VIL14_02320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522573.1"
                     /translation="FRVQSHKFTQDNIQATLVCSKCDEIFSKEFLLDLEGQTIEFRCP
                     VCGVSGEADLPYKTAEEREEFDDDLDEVEEDTFDEFEEDY"
     gene            complement(478..906)
                     /locus_tag="VIL14_02325"
     CDS             complement(478..906)
                     /locus_tag="VIL14_02325"
                     /inference="COORDINATES: protein motif:HMM:NF024637.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HEY8522574.1"
                     /translation="MKVFDGKSAAEEYMSTHTLTFSTPEMTLKKFAVWLAEIVENNGE
                     EVPRIILYLQTRDKGNEEQSQSDETSINKPINFSDLLPDVDETFKPTGAITDMFNKTE
                     PSFSKNTEYSTTKPESKFCIECGNKLRTDSKFCTKCGARF"
     gene            complement(937..1524)
                     /locus_tag="VIL14_02330"
     CDS             complement(937..1524)
                     /locus_tag="VIL14_02330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522575.1"
                     /translation="MSSFGVDTLGGLTEKLKQLINDTQNAYETLIDSTQRYKQGKMNE
                     KEYFSSIGKYLIASSAMNFLAIKVILEIKSAIDKGKLLKNPTAGIVDPNSNTSSSVGF
                     GIGGFVGGGGGGGSVGGLENSPVQGSGSQQQYSSSSIESTIKPVDLEIEKPSQDITTS
                     EVDSLKDNKTFKNCIVCGVLIPTKAKFCSKCGNSQ"
BASE COUNT          682 a          282 c          293 g          775 t
ORIGIN      
        1 tttagggtcc agtctcataa atttactcaa gacaacattc aagctacatt agtttgttca
       61 aaatgtgatg agatattttc caaggaattt ttattggatc tggaaggaca aaccatagaa
      121 tttagatgtc ctgtttgtgg agtttcaggt gaagctgatt taccttataa aacagcagaa
      181 gaaagagaag aatttgatga tgatttagat gaagtagaag aagatacatt tgacgaattt
      241 gaagaagatt attaaatgat ctaataatac cctatttatt acatatgtta tttttcaatt
      301 aattattaag atatgcaaat ctgtcaaaag tgtaaaaatg tcagattctg tttattaagt
      361 tttttctcaa tcaatttgta atgagtatat tcattaataa agaaaaagga atttatagaa
      421 aatagaaata actaatgaaa actaagctta attttactgt taatgtgtat ttaaatttta
      481 gaatctcgca ccacattttg tgcagaattt agaatcagtt ctaagtttat taccacattc
      541 aatacaaaac tttgattctg gttttgttgt agaatattca gtatttttag aaaatgatgg
      601 ttctgttttg ttaaacatat cagttattgc tcctgtgggt ttgaaagttt catcaacatc
      661 aggtaaaaga tctgaaaaat tgataggttt attaatcgat gtctcatctg attggctttg
      721 ctcttcattt cctttgtctc ttgtttgtag ataaagtata attcgaggta cttcctcacc
      781 attattttca acaatttccg ctaaccatac tgcaaatttt ttaagtgtca tttcaggtgt
      841 agaaaaagtc aaagtatgag tagacatata ttcttctgct gctgacttac catcaaatac
      901 tttcatcatg aataaaaggt tataacttgt ttttaattat tgcgaattac cacatttgct
      961 acaaaatttt gcttttgtcg gaattaagac tccacaaact atacaatttt taaatgtttt
     1021 attatctttt aatgaatcta cttctgatgt agttatatct tgagatggtt tttctatttc
     1081 taaatcaaca ggtttaatgg ttgattctat tgatgatgaa gaatattgtt gttgactacc
     1141 actaccttga acagggctat tttctaaacc accaactgaa cctcctccac caccaccacc
     1201 aacaaatcca ccaatcccaa aacctacaga agagctcgta ttcgagttag ggtctacaat
     1261 accggcagta ggatttttaa gtaactttcc tttatcaatt gcggatttta tttctaatat
     1321 gaccttgata gctagaaaat tcattgcaga actagcaatt agatattttc caatgctcga
     1381 gaaatattct ttctcattca ttttaccttg tttataacgt tgtgtagaat caataagcgt
     1441 ttcatacgca ttttgagtat cattaattaa ttgttttaat ttttcagtca atccaccgag
     1501 cgtatcaacc ccaaaagagg acattatata aaatactgtt agtttgggtt taataaagtt
     1561 tgaaaaagat atatgaaaga taaattatta tatcttaagt aagatagatt caaaataaat
     1621 ttcagtattg tcaatattta aacattcgtt agtgttaaaa gataaacata caatagaaga
     1681 ttttcttttt taatttgacg ataccacttt tttctagaat aatggtagta ttttgagata
     1741 ttatatataa ttctcgtctc atgtggatat agcttttttc agcctgcata tttgattata
     1801 aacatcaatc tatttgttgt tttattgttg aacaaattat ttgattttta aatggtcaca
     1861 gattgataat tatattatca gatatacaat catgtgtatg tataggatta tttgatttac
     1921 tatgacatta tagtttttga tttgacagtt tttcttagtc catcatgtat tactttcatt
     1981 tataccattc ttatgtcata gagaatattt aagcaattaa acaacaagaa at
//
LOCUS       DATCMF010000185         1527 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_553310, whole genome shotgun sequence.
ACCESSION   DATCMF010000185 DATCMF010000000
VERSION     DATCMF010000185.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1527)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1527)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1527
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_553310"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            557..1489
                     /locus_tag="VIL14_02335"
     CDS             557..1489
                     /locus_tag="VIL14_02335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522576.1"
                     /translation="MSRNRSSFVYAQILSLFPIILLLLSLNYLISVFASTEKSSDDNK
                     DLLTLNTKMNLNNLQLKDGDKIKIVAYVNGETGIQYLDPQKEKNQITGNFLTAAMKFN
                     KTNEISSIGNDEYFVCAYVLSNGPTKLSNNINHTSAITYDCDEGQTVEGKDVSMGRLF
                     NTMKKFQKTLELSQIAQKSNQGSGDVKITVITPIYDQTDVELLNVIAMVKGEYQVKTV
                     NIENELKKAGDKSDESYIIKVPFTFDRNTELGTIEKGDIFFGCASAEELGPPQMTECE
                     KKYIKDFDKPNKIVTRHEEDLLPGGKYYDGGKKE"
BASE COUNT          602 a          204 c          246 g          475 t
ORIGIN      
        1 tgttaaaagt aattcaaatg tatatttgtg ctgggttaca taatcaaata agaattattc
       61 tggaataatt atattattct ttatattaaa aaatttaaat ttcttttcta taggtcagag
      121 ttatataaaa tatgttgtaa taacctatgt gttaaattaa agaaacagat ttaactcctc
      181 ttataattat ttaggaggtc tttgtagatg accgccctta tacaatatgg aagtcaatct
      241 tatgggcctc attacaagcc tgtctcatta tttaggccca ttcttattta tcacatgtca
      301 gaaatgctca ttaatgttct tccatagaaa ttactacaca tattgatagt atttaataat
      361 gaataactta acaccaaata caacaaaaaa ccaatgtact acaattagga tgtatattac
      421 taaaaggaac tacattattg ttggaaacac atggaaattt tgattttgat ctcaatgcgt
      481 ccaaaaaata gaaatacata ataaataatc taggattact taaatatcaa aaaaatatat
      541 aatttctgta atgaacatga gtagaaatag gtctagtttt gtatacgcac agattttatc
      601 tctttttcct attatattgc tgttattatc tctcaattat ctaatttctg tatttgcttc
      661 aactgaaaag agcagtgatg ataataaaga tttgttgact ttgaatacaa agatgaattt
      721 aaacaatcta caattaaaag atggagataa gataaagatt gtggcatatg ttaatggaga
      781 aacagggatt caatatcttg acccacaaaa agaaaaaaat caaataactg gaaatttttt
      841 gactgcagct atgaaattta ataaaactaa tgaaatttcc tcaattggaa atgatgaata
      901 ttttgtctgt gcttatgttc taagtaatgg accaacaaaa ctatcaaata atattaatca
      961 tacaagtgca atcacatatg attgtgatga aggtcaaaca gtagaaggta aggatgtgag
     1021 catgggacgg ttatttaata caatgaagaa atttcaaaag actcttgaat taagccaaat
     1081 agctcaaaaa agcaaccaag gttctggtga cgtaaaaatc actgtcatca cgcccattta
     1141 tgatcaaacg gatgtagagc tcctcaacgt aatagcaatg gtcaaaggcg aataccaggt
     1201 gaaaacagta aatatagaga atgaattgaa gaaagcaggc gataaatccg atgaaagtta
     1261 tataataaaa gttccattta cattcgatag aaatactgaa ttagggacta tagaaaaagg
     1321 agacatattt tttggttgtg cttcagcaga agagttaggc ccaccacaaa tgactgaatg
     1381 tgagaaaaag tatataaaag attttgataa acccaacaag atagtcacca gacatgaaga
     1441 agatttgctg ccaggtggaa aatattatga tggtggaaaa aaagaataga aaatctgata
     1501 atccgaacta ttacttttcg ttcgata
//
LOCUS       DATCMF010000186         2942 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_355376, whole genome shotgun sequence.
ACCESSION   DATCMF010000186 DATCMF010000000
VERSION     DATCMF010000186.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2942)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2942)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2942
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_355376"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1273
                     /locus_tag="VIL14_02340"
     CDS             <1..1273
                     /locus_tag="VIL14_02340"
                     /inference="COORDINATES: protein motif:HMM:NF012364.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DNA polymerase domain-containing protein"
                     /protein_id="HEY8522577.1"
                     /translation="GVSSTTAIIKEKKYRGGLVVEPKLGIHFNVVVVDFASLYPSIIK
                     VHNLSYETVNCSHLSCKNDPEQQIPETTHWICNRRKGLTSLLIGSLRDLRVRYYKQLS
                     KDKTTTIDNRQLYEVISQAIKVILNASYGVMGAEIFPLYCLPVADATAAIGRVTTTRT
                     IEKCKEIGIEVIYGDTDSLFLKNPSSEKVKDISEWARSQLEVDLEIDKTYRYVVFSDL
                     KKNYLGVLGDGTVDVKGLTGKKSHTPPFIRKAFYKILEILKEVNSENDFQKAKEEIKK
                     IIKSYANDLETGKIHPSELSFNVMVNKSPDRYGEKTNNSKVKSIDGKNIDFITYKGLP
                     QHIKAAMLLHQSGREIKAGDIISYVKTKTNDGVKPVDLLKNINEVDTEKYLETMESTF
                     DQLLSALNYNFKSILGKDRQANLDELFWSKK"
     gene            1337..2293
                     /locus_tag="VIL14_02345"
     CDS             1337..2293
                     /locus_tag="VIL14_02345"
                     /inference="COORDINATES: protein motif:HMM:NF012703.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arginase family protein"
                     /protein_id="HEY8522578.1"
                     /translation="MNALETLESFFVAPEKTNSKCTFGDFPAQITFQDSDAILYGIPL
                     DITTTFGKGTSYGPEAIRVTSAKQIESFLLDENQEIYERIKIYDIGDLTLVNSKLNGK
                     YEKLLDNNLKRISKINKINSLIRKEKKVPIILGGEHTLSYFSIKSIANENPIIIHFDA
                     HRDMKPIYDRKKICHTTPFFHLIDEGHVKGDNIIQIGIRQSDKEENDIAINKHVNTFT
                     GWDINKNLKGVTRKIRELTNNRNIYITFDIDVYDICYVPCTGTPEPFGLNPFQIIEIL
                     KSINKTAILIGIDMVEVAVKNGDYREGTLATQTLYRILSNFY"
     gene            complement(2466..>2942)
                     /locus_tag="VIL14_02350"
     rRNA            complement(2466..>2942)
                     /locus_tag="VIL14_02350"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02540"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02540"
BASE COUNT         1109 a          486 c          503 g          844 t
ORIGIN      
        1 gggagtatca tctactactg caataatcaa agaaaaaaaa tatcgcggtg gtcttgtcgt
       61 agaacctaag ctaggaatac attttaatgt agtagttgtc gattttgcat cactttatcc
      121 aagtattata aaagttcata atctttcgta tgaaactgta aattgttctc acctatcatg
      181 caaaaacgat ccagaacaac aaattcctga aactactcat tggatatgta atagaagaaa
      241 aggtttgaca tctcttctca ttggatctct ccgagacttg agagtaagat actataaaca
      301 actttcaaaa gataaaacaa caactataga taatcgtcaa ctttatgaag taattagtca
      361 ggctataaag gtaatattaa acgctagtta cggtgttatg ggagcagaaa tatttccact
      421 ctattgtctg ccagtggccg atgctactgc cgccatagga agagtaacaa caacacgaac
      481 aatagaaaaa tgtaaagaaa ttggtattga agtaatttat ggtgatacag actctttatt
      541 tttaaaaaat ccatcttctg agaaagtaaa agatatttca gaatgggcaa ggagtcagtt
      601 agaggtagac ttagaaatag acaaaacata cagatatgtt gtttttagtg atttaaaaaa
      661 gaattatctt ggagtactag gagatggaac ggtagatgta aaaggattaa cgggtaagaa
      721 atcacataca ccaccgttca taagaaaagc attttacaaa attctggaaa tactaaaaga
      781 agtaaattct gaaaatgatt ttcaaaaagc aaaggaggaa attaagaaaa taataaagag
      841 ttatgctaat gatctagaga caggtaaaat tcatccttca gaattgagtt ttaacgttat
      901 ggttaacaaa tcacctgatc gatatggaga aaagacaaat aattctaagg taaaatcaat
      961 agatggaaaa aatattgatt tcataacata caagggtcta cctcaacata ttaaggccgc
     1021 aatgttacta catcagtcag gaagagagat caaagcagga gacataatct cgtatgtaaa
     1081 aacaaaaact aatgacgggg taaaacctgt ggatttgctt aaaaatatta acgaggttga
     1141 cacagaaaaa tatcttgaaa ctatggaatc aacttttgat caactattat ctgcattaaa
     1201 ctataacttc aaatcaatat taggaaaaga tagacaagct aatttagatg aattattttg
     1261 gtctaagaaa taattaaaat actaattaat gagaatctag aaacaattta atttgtaact
     1321 tcacaaagta atagaattga atgcactaga aaccttagag tccttttttg tcgctcctga
     1381 gaaaactaat tcaaaatgta cttttggaga ttttccagct caaataacat tccaagattc
     1441 tgatgcaatt ctatatggaa ttcctttgga cattactact acttttggta aaggtacttc
     1501 ttatggccct gaagcaatta gagtaacatc tgcaaaacag atagaatcct ttttattaga
     1561 tgaaaatcaa gaaatttatg aaagaattaa aatatatgat ataggtgact tgacactagt
     1621 caattctaaa ttaaatggta aatatgaaaa acttttagat aataacttga aaagaatctc
     1681 caaaataaat aaaataaatt cattaataag aaaagaaaaa aaagttccga ttatattagg
     1741 aggagaacat acattatcat attttagtat aaaatcaatt gctaatgaga atcctataat
     1801 aattcatttt gacgcacacc gggatatgaa accaatttat gatagaaaga aaatttgtca
     1861 taccacacca ttttttcatc tcattgatga aggtcatgtt aaaggtgata atattattca
     1921 aattggaata cgccaaagtg acaaagaaga aaacgatatt gctattaaca aacatgttaa
     1981 tacttttaca ggatgggata ttaataaaaa ccttaaagga gtcacaagaa aaataagaga
     2041 acttactaat aatagaaaca tatacattac atttgatatt gatgtatatg atatttgtta
     2101 tgtaccttgc acaggaacac ctgaaccatt tggattaaat ccttttcaga taatagagat
     2161 actcaaatct atcaataaaa ctgctatact gatcggaata gacatggtag aggttgcagt
     2221 taagaatggc gattatagag agggaacttt agcaacccaa acactttacc gaatattatc
     2281 aaatttctat taaaaaatca attgatggca aagataaaat taatagttat agttatcagt
     2341 tctataaaat agattttaaa taatataatt aaatattata ataaaaaaat tcatcgtgta
     2401 taggatcgca ttatccaata gtactctaaa cctttacgta tactaaccaa gattaaagag
     2461 taattatatc aggtgccttg ggttgttggt aatggcaggc tgaacacctc gccgaagctt
     2521 gatgcgtaca cctccattcc atcaatgcta tcttctatag ctacccttct ccttacggaa
     2581 ggctgtcttt tctcgagaat ggcttcctcc ttagatgctt tcaggagtta tccaaaacag
     2641 cttagctgct cagcgtgccc tgtcggacag ctgataaacc agaggctgcg ttgccctgtt
     2701 cctctcgtac taaggacaac ttcccctcag acaaccacgc ccctgtcagg cagagaccga
     2761 cctgtctcac gacggtctaa acccagctca cgttcccctt taatgggcga gcagccccac
     2821 ccttggctcc tgctgcagaa ccaggatggg aagagccgac atcgaggtac caaaccgcgg
     2881 ggtcgatagg agctctcgcc cgcgacgagc ctgttatccc tagggtaact tttctgtcac
     2941 ca
//
LOCUS       DATCMF010000187         1902 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_487457, whole genome shotgun sequence.
ACCESSION   DATCMF010000187 DATCMF010000000
VERSION     DATCMF010000187.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1902)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1902)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1902
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_487457"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(203..1516)
                     /locus_tag="VIL14_02355"
     CDS             complement(203..1516)
                     /locus_tag="VIL14_02355"
                     /inference="COORDINATES: protein motif:HMM:NF024808.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HEY8522579.1"
                     /translation="MAKLKILITVYFAILSLFFISQLNLIPIIAQEEITLTAIFAEPK
                     ERWDMLLENATKILNDRHPDKTIKIDYRVLPYSDTRTQILTAMAGKTPIDLISLDQIW
                     LGEFAEAGFLSDLTHNTQQWNKSSDWYVQNWEGGLYNDQVKGIWAWTDVRALWYWKDL
                     LNKAEINPDELENWNGYISASKKLNQLLQKDGIQGMHLVGAAHSPDMWYPYLWMIGGE
                     ILEKRDGHPTKQNYWYPIYNSDLGVKALQFLKDQVDAGTKPQLNHYWGQEFADKKFAV
                     MLEGSWLLGQFDKNEWNTFKEKIGMIPMFPVPNASNITTSTLMGGWLLSIPVTSQNKE
                     LSWELLTIMLEPDVLIPMLLQQGYLPTQTSIGEGQYSAKLKSTIPYYEELVSLISLGK
                     GRPNIPEYPIVAEHIRNAIEQVYNGMDPKQALDEASKQSAKALGW"
BASE COUNT          601 a          311 c          299 g          691 t
ORIGIN      
        1 gaatcctata aaatcccaat cttttattat tgtaagaatg gacacatcat gtaatgagat
       61 atatatattc caaattaaag gaataaaaag aaatgcaaat aatattataa tactaggtaa
      121 taagaaaaga taaggctcga aactttttaa tattaacatt gtatcatgtt aattcgtcaa
      181 cttgaaaaat gaatattata ttttaccatc ctaaagcttt tgcagattgt tttgaagctt
      241 catctaatgc ctgttttggg tccattccat tgtatacttg ttcaattgcg tttcttatat
      301 gctctgcaac tataggatat tcaggaatat ttggtcttcc ttttcctaat gaaattagag
      361 aaacgagttc ttcataataa ggaattgttg attttaactt cgcagagtat tgtccttctc
      421 ctatgcttgt ttgagttgga agatagcctt gttgtaacaa catcggaatc aaaacatcag
      481 gctctaacat tatagtaaga agttcccaag ataattcttt attttgtgat gttacaggta
      541 tacttaagag ccatcctccc attaaggtag aagtagttat atttgaagca ttaggtaccg
      601 gaaacattgg aatcattcct attttttcct tgaatgtatt ccattcattc ttatcaaatt
      661 gccccaataa ccaagatcct tcaagcatta cagcaaattt cttatctgcg aattcttgac
      721 cccaataatg attgagttgg ggtttagttc cagcgtcaac ttgatctttt aaaaattgaa
      781 gagctttaac acctaaatcg ctgttataga tcggatacca ataattctgt tttgttgggt
      841 gtccatctct tttttctagt atttcccctc ctatcatcca tagataagga taccacatat
      901 ctggggagtg ggcagcacct acgagatgca taccttgaat cccatccttt tgtaaaagct
      961 gatttaattt tttagatgca gatatgtatc cattccaatt ttctagctcg tcaggattaa
     1021 tttctgcttt attcaacaga tccttccaat accatagtgc cctgacatcc gtccatgccc
     1081 aaattccttt gacttggtca ttatacaatc cgccctccca gttttgtacg taccagtcag
     1141 aggacttgtt ccattgttgt gtattatgtg taagatctga taaaaatccg gcttctgcaa
     1201 attcacccaa ccatatttgg tctaatgaaa taagatcaat aggagttttt cctgccatgg
     1261 cagtaaggat ctgtgttcgt gtatcagaat aaggtaagac tctataatca attttaatag
     1321 ttttatcggg atgcctatca tttagtatct ttgtggcatt ctccaagagc atatcccatc
     1381 tctccttagg ttcagcaaag attgcagtaa gagttatttc ctcttgagca ataatgggta
     1441 taagattcag ttgtgaaata aaaaataaag ataatattgc aaaatatact gtaattaaaa
     1501 tttttaactt ggccatttta gaattataac aaaagttaca actactacta ttattaatta
     1561 tttactgata aatattgtat ttttaaggtt atctgtttaa taactgtata ctttttattt
     1621 tagaataaat gcagttttaa ttgtctagcc tatttattta gttttttatt gttacaaatt
     1681 aatattaaat attacttttt agtagattta gtgagtattt tctgtctaga ataacaatca
     1741 aaaatcttag taaaagttat gggagtgtga gtgcagtaac gaaattttcg gtagaaattg
     1801 attcaggaat atttttagta cttttgggac catctggatg tggaaaaact actataataa
     1861 aatctatagc tggacttatc gatcctacag aaggacaaat tt
//
LOCUS       DATCMF010000188         1852 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_40197, whole genome shotgun sequence.
ACCESSION   DATCMF010000188 DATCMF010000000
VERSION     DATCMF010000188.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1852)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1852)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1852
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40197"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..964
                     /locus_tag="VIL14_02360"
     CDS             <1..964
                     /locus_tag="VIL14_02360"
                     /EC_number="2.7.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="sulfate adenylyltransferase"
                     /protein_id="HEY8522580.1"
                     /translation="ESVLKSGRLKNGLPWTIPIILDVEEPTAKKIKDYREISLKNKGE
                     NFATLYFDEFYSYNKLDMVKALYQSDDEQHPGVYKTFKMKEYLVSGRIDVYKKINNFK
                     LRKYRLEPLKTRKEIKRRRWKTIVGFQTRNIPHIAHEMLQKAALNIYDGLFLNPLIGK
                     KKIGDFKDELILESYVKLIENYYPPERVMFVTLHTEMRYAGPKEAIHHAIMRKNFGCS
                     HFIVGRDHAGVGDYYPPFAAHEIFKEYPDIGIEPIFFPSFYYCKKCLGYANERNCPHS
                     LEYKEELSGTRMRKMVTSGEMPGKHLMRPEIADVIIKFQDPFVS"
     gene            1192..>1852
                     /locus_tag="VIL14_02365"
     CDS             1192..>1852
                     /locus_tag="VIL14_02365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522581.1"
                     /translation="MIFFSNNFIYAQNEFESTEENLNVTKSKSHERFVVPFSASNTDR
                     KNPVIHTYEIPKDVSFMLSIENNMTYNNSSEAKTIIKLMENKPSEKFIELAMFEQNAK
                     FWVAVNTNESGYIRVHEQDTDGWSRDEPIMVGHANNQGLTITNGKRIVIDRLSLDGFS
                     LGSIAIYGKDDTDSPINTVDGYLSFDLLYGNPRDSPLYFLPIIMLVLVGGIVFYLLKI
                     KK"
BASE COUNT          684 a          239 c          301 g          628 t
ORIGIN      
        1 tgaaagtgtt ttaaaatctg gaagattaaa aaatggatta ccatggacaa ttcctatcat
       61 cttagatgtg gaagaaccta ctgccaaaaa aataaaagat tatcgggaaa tatcactaaa
      121 aaataaaggt gagaattttg caactctcta ctttgatgag ttttattcct ataataaatt
      181 agatatggtg aaagcattat accaatcaga tgacgaacaa catcctggag tatataagac
      241 ctttaaaatg aaagaatatt tagtttctgg aagaattgat gtttataaaa agataaataa
      301 cttcaaatta cgaaaatata gattagaacc attaaagact agaaaagaga ttaaaagaag
      361 gagatggaaa actatagttg gttttcaaac cagaaatatt ccccatatag cacatgaaat
      421 gcttcaaaaa gcagctttaa atatctatga tggattattt ctcaaccctt tgattggaaa
      481 aaagaaaatc ggtgatttta aagatgaatt aatactcgaa tcatatgtaa agttaataga
      541 aaattattat ccgccagaaa gagtgatgtt tgttactctt catacagaaa tgagatatgc
      601 aggaccaaaa gaagcgattc atcatgctat tatgagaaaa aactttggct gttctcattt
      661 tatagtagga agagatcatg ctggtgtagg tgattattat cctccttttg cagctcatga
      721 aatcttcaaa gaataccctg atattggaat tgaaccaata tttttcccat cattttatta
      781 ctgtaaaaaa tgtttaggat atgctaatga gagaaattgt cctcatagtt tagagtataa
      841 agaagaatta tctgggacaa gaatgagaaa gatggttact tcgggagaaa tgccaggaaa
      901 acatttaatg agaccagaaa ttgcagatgt aattataaaa tttcaagatc catttgtttc
      961 ttaataattt ggtatggtac aaaaaactgt ttctttttat aattcttttt agttatttaa
     1021 atgatttgac aaggattgat tctattaact aactttattg ttgtcctgtt ttttaatctt
     1081 ttatttacgt tcatattact ctaaataatt ttatataaaa tgcaatctat gcatgaaagt
     1141 tctttattat attttttgaa attttctttc tatattggtg cctttatata tttgatattt
     1201 ttttcaaata attttatata tgctcaaaat gaatttgaat ctacagaaga aaaccttaat
     1261 gtaacaaaat caaaaagtca tgaaagattc gttgttccct ttagcgcatc gaacacagac
     1321 cgtaaaaatc cagtgataca tacttatgaa attcccaaag atgttagttt tatgcttagt
     1381 attgaaaata atatgaccta taacaattct tctgaagcaa aaacaattat taaattgatg
     1441 gaaaataagc ctagcgaaaa attcattgaa ttagccatgt ttgaacaaaa tgcaaagttc
     1501 tgggttgctg ttaatacaaa tgaatctggt tacataagag tccatgaaca agataccgat
     1561 ggatggtctc gtgatgagcc cattatggtg ggacatgcta ataatcaagg tttaacaatt
     1621 actaatggga aaagaatcgt aattgacagg ttatcattag atggttttag cttaggttct
     1681 attgctatat atggaaaaga tgataccgat tctccgataa atactgtgga tggctatctt
     1741 tcctttgatc ttttatatgg taatccaaga gattctccat tatattttct acctataatt
     1801 atgttagttt tagtaggagg gatagtattt taccttctca aaattaagaa aa
//
LOCUS       DATCMF010000189         3092 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_40250, whole genome shotgun sequence.
ACCESSION   DATCMF010000189 DATCMF010000000
VERSION     DATCMF010000189.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3092)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3092)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3092
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40250"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..685)
                     /locus_tag="VIL14_02370"
     CDS             complement(<1..685)
                     /locus_tag="VIL14_02370"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEY8522582.1"
                     /translation="MEKQSIAVVTGSSTGIGFETSLLLARNGFYTYATMRDRLKTDKI
                     EKIANKENLPLEVLSMDVDNDDSVRNAIHKIIDEKKKIDILVNNAGYGLFGALEDISI
                     EEIKKQFETNLFGAIRTIKEVLPTMREQKNGIIINISSIAGVVGIPAECIYVSTKFAL
                     EGLTESISYELQPYGIKVVIIEPGVINTNFVPNIKFPKPIDNKLQQSLFKEEEKEESK
                     VNYSNNEIKK"
     gene            complement(1031..1411)
                     /locus_tag="VIL14_02375"
     CDS             complement(1031..1411)
                     /locus_tag="VIL14_02375"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY8522583.1"
                     /translation="MTKKILLVDDEPDVTYTIKKIVEDNGYKVDSFNDPILALNSYKS
                     KFYDLIILDIKMPTMDGFQLYLKIREKDPKVKICFLTAITRFNEEFRKIRLALGKTIN
                     EDYFIQKPVEMEDLIKKLTSIMNI"
     gene            complement(1735..1977)
                     /locus_tag="VIL14_02380"
     CDS             complement(1735..1977)
                     /locus_tag="VIL14_02380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522584.1"
                     /translation="MAENMSNKSNNYKRDAQNGEIKSIVLGLFALIGFIILISSIFMG
                     VVGEPLASIADTVFVAAIIGSFTLVGTIVGGTFLKK"
     gene            2521..2859
                     /locus_tag="VIL14_02385"
     CDS             2521..2859
                     /locus_tag="VIL14_02385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6766 family protein"
                     /protein_id="HEY8522585.1"
                     /translation="MGKRPSIAKKYGYLWITLIFFSGSIIAHWYYGFQSGNTLVENLR
                     DTFENWQSEFLQLIWQVGGLSYLWYIGSPQSKEEEERNQEMLQWIIKRLDPQKSEEFL
                     KEMEEKYPKK"
BASE COUNT         1058 a          423 c          388 g         1223 t
ORIGIN      
        1 ttttcttaat ttcattatta gaataattaa cttttgattc ttctttctct tcttctttga
       61 atagagattg ttgtaattta ttgtcaattg gttttggaaa tttaatattt gggacgaaat
      121 tagtattgat aacacctggt tcaataatga ctactttaat tccatatggt tgaagttcat
      181 aggatataga ttcagttaat ccttctaatg caaattttgt actaacatat atacattctg
      241 caggtattcc tactacccct gcaatagagc ttatattgat aattattcca ttcttctgct
      301 ccctcatagt aggtaaaact tctttaatag ttctaattgc tccaaagaga tttgtttcaa
      361 attgtttttt tatttcttct attgatatgt cttctaaagc accaaataaa ccataacctg
      421 cattatttac caaaatgtca attttctttt tttcatcaat tattttgtgt attgcatttc
      481 ttactgaatc atcattatcc acatccattg ataaaacttc taaaggaaga ttctctttat
      541 ttgcaatttt ttcaatttta tcggtcttaa gtctgtcccg cattgtagca tatgtataaa
      601 aaccatttct tgctaataac aaagaggttt caaatcctat tccagttgaa ctgccagtaa
      661 ctactgcaat actctgcttt tccattctaa tcttaggcaa ttacaaaata gacaaaaata
      721 taattctata gttgacgata acaatagatt tatggtaatt attcttcttt tttaaaatat
      781 tctaatttat tattagtagt agtaattata tacagagagt ataatttgtt tttatttcat
      841 ttacaaattt taagaatata aagatgattt agatttttta aactaataaa taaatttatt
      901 atcagttagt aaaaaaatat atacattatt ctgtcacgtt tctgctcaac ttttttgtct
      961 gctttagtaa taaagataga atattaaaga tttatttgat ataaatagca tatctatcta
     1021 tgtttgattt ttagatattc attatagaag ttaatttttt aattagatct tccatttcga
     1081 cgggcttttg aataaagtag tcttcattga ttgttttacc caatgccaat cgtatttttc
     1141 taaattcttc attgaatctt gtaattgcag ttaaaaaaca tatttttact ttaggatctt
     1201 tttctcttat ttttagatat aattggaatc catccatggt tggcatcttt atatcaagaa
     1261 ttattagatc ataaaatttg ctcttgtacg agtttaatgc taaaatagga tcattgaaac
     1321 tatccacctt atagccattg tcttctacaa ttttctttat tgtataagtg acatctggtt
     1381 catcatctac taataaaatc tttttagtca ttgttataac atcaagtcca ttaattgcct
     1441 ttcttatatt ttaactctat gagcttaata gtattaaaat attggagagt taagtcctaa
     1501 atttttacca tctatttttt ttgattctgc atgcatatta caaaatacaa ttagtatagg
     1561 attcaccgac aaatgtagtt agctggttgg tagtggaatc ctgcatatag taggattctc
     1621 ttaacttgta tttagctttt tagtaactta atttgtttga aatggataga atagtatagc
     1681 atgaatctaa gattgacctt tcatgtcttg ataaaataaa ataaaataga ggtattattt
     1741 cttcaaaaat gtaccaccaa caattgttcc taccaaagta aaagacccaa taattgcggc
     1801 aacaaataca gtatctgcta ttgatgctaa tggttcacct acgaccccca taaatattga
     1861 agatataagg ataataaatc caatcaatgc gaataaccct aaaacaatgg atttaatttc
     1921 accattttga gcatctcttt tataattatt agacttgtta gacatgtttt cagccattgt
     1981 caatacatca catataataa tataaaaaca attttgaaaa ttattaccaa ctactttatt
     2041 aatagtccca tttctatatg tgtgaaatgg actattcagc aatttcttct ttttctatcc
     2101 tacctttttg aaatatacaa tacctatggt taattggttg ctatggttaa ttggttgatt
     2161 attgttatcc tatttactaa aactttttta aatgtagtaa tacaagaatt aacataagca
     2221 gtgcataaag tctttaatat gcaattgcca aaagaattcc gtgtatacct ttttcttcta
     2281 ctaacttata ttcagctttt attattagga actttaaaat tgtttttgat gattttttct
     2341 tgttggtaaa gtaaatacaa atacttatta tatttaattt ctattttaaa gataattcat
     2401 ctttatcctt tcacaaaaga gattaaaatg agcaagaatt gatataatta aaaactagga
     2461 tatcaatttc tataaggttc ttattaaatc atcttatggg atgttgtaaa tctattgtag
     2521 atgggaaaac ggcctagtat agcaaaaaaa tatggttatc tatggattac attaattttc
     2581 ttttctggtt cgataatagc acactggtac tatggtttcc aatcaggaaa tactttggta
     2641 gaaaatttaa gagatacttt tgagaattgg caatctgaat ttttacagtt aatttggcaa
     2701 gttggtggat tatcttattt atggtatata ggcagtcctc aatcaaaaga agaagaagag
     2761 agaaaccaag aaatgttaca atggattatt aaaagattag atccacaaaa atcagaggaa
     2821 tttctaaagg aaatggagga aaaatatccc aaaaaataag catttaattt gaaataattt
     2881 aatcattttg aatttgaatg ttatttattt ctcaattatt ctttctttag ttcatttata
     2941 caaatacaga aaaatgaaaa aataaatact gaatcataat tttattaagg ttagaccaag
     3001 agtatttttg actaaatcaa ttagtttact cattattagt agtttaaaat aaacttgtaa
     3061 tttcaaaaga ttaatcccta tatcagtaac tg
//
LOCUS       DATCMF010000190         2296 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_169533, whole genome shotgun sequence.
ACCESSION   DATCMF010000190 DATCMF010000000
VERSION     DATCMF010000190.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2296)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2296)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2296
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_169533"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..324)
                     /locus_tag="VIL14_02390"
     CDS             complement(<1..324)
                     /locus_tag="VIL14_02390"
                     /inference="COORDINATES: protein motif:HMM:NF013543.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006817 - phosphate ion transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HEY8522586.1"
                     /translation="MEPIPLIITGIIAALFFDFVNGFHDAANAIATVVGTRVLKPIQA
                     VGMAALANFIGPFVFGTAIAATVGKGIIQPNFSTAEVILAGLVGAIVWDLITWYFGLP
                     SSSSHA"
     gene            complement(351..989)
                     /locus_tag="VIL14_02395"
     CDS             complement(351..989)
                     /locus_tag="VIL14_02395"
                     /inference="COORDINATES: protein motif:HMM:NF013982.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF47 family protein"
                     /protein_id="HEY8522587.1"
                     /translation="MPTNWLTWARGNDKLILGALEKQGSILVEATSLLTELLTDYEKS
                     LSENKDKIKDLEVKGDSITHELFTTLSQTFVTPLDREDLSGLTSTIDQVLDYVDGTAD
                     RFVLFKIKKPMPYMLDLAKILHLCSQEIHDVLIKLQSSKKNGKFIEHCNKIKKHEREA
                     DHLYRKAIAELFETNDAVQILKNYEIYQNLESSIDRCMDVADIVEDIVLKYG"
     gene            complement(1120..1773)
                     /locus_tag="VIL14_02400"
     CDS             complement(1120..1773)
                     /locus_tag="VIL14_02400"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF016115.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016812 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds, in cyclic amides
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclase family protein"
                     /protein_id="HEY8522588.1"
                     /translation="MQFANNMIIDLSQSINSNIKLYPGSPNVYFLKWSKYSIDSYDSE
                     AIFLSTHTGTHIDAPSHFIEEAEPIDNIDVNRFVMKNVHLLKIFKSSNQLITVEDIIN
                     SDIDIKENDSIVFSTGWEHNYNSDNYINANPGLSPEAAIYLSNKKINAVAIDSPSIDS
                     AIESEFPVHKILLKNGIIIIENICNLSQIDKKKFDLIAIPLKLLGASGSPVRALAII"
     gene            1907..>2296
                     /locus_tag="VIL14_02405"
     CDS             1907..>2296
                     /locus_tag="VIL14_02405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522589.1"
                     /translation="MLKFLTLSLLLIISIIILYCNIPNIAGELGMMPITTPNKLSPTY
                     VIDITTGSGISYKFQHFYPLNIAVPVDTTVAWLNGDPEQIHTVTSDGPGSSDSGKLFN
                     SGILSYLSSFQYTFNQPGKFLYHCEIHP"
BASE COUNT          787 a          369 c          305 g          835 t
ORIGIN      
        1 tgcatgacta ctagatgatg gtaaaccaaa ataccaagta atcaaatccc atacgattgc
       61 tcccactagt ccagctaaaa taacttccgc agttgaaaaa ttaggttgaa taattccctt
      121 acctacagtc gctgctatag ctgtaccaaa aacaaacggc ccaataaaat tagctagagc
      181 tgccatacct actgcttgaa ttggttttaa aactctagtt cctacaacag ttgctattgc
      241 attagctgca tcatgaaaac catttacgaa atcaaaaaaa agagctgcga ttattcctgt
      301 tataattaac ggtattggtt ccactttagc atcattccta caaagaacaa ttatccatat
      361 ttgagaacta tatcttccac tatatctgcc acatccatac acctatctat ggaagattct
      421 agattttgat aaatttcata attcttaagt atttgtacag catcattggt ttcaaacaat
      481 tctgctatag cttttctata aagatgatcc gcttcacgtt catgtttttt aattttgtta
      541 cagtgttcta tgaattttcc attttttttt gatgactgta attttattaa cacatcatgt
      601 atttcttggg aacataaatg taaaatctta gcaagatcta acatataggg cataggtttt
      661 ttaattttaa aaagtacaaa cctatccgca gtaccatcta cataatctaa aacttgatct
      721 attgtactag tcaaccctga tagatcttct cgatctaatg gagtaacaaa tgtctgcgat
      781 aaagttgtaa ataactcatg agtaatacta tcgcctttaa cttcaagatc ttttatctta
      841 tctttatttt cagaaagaga tttttcatag tcagttaaaa gttctgtcag taaggatgtt
      901 gcttcaacta aaatagatcc ttgtttttct aaagccccaa ggattaattt atcattacca
      961 cgagcccaag taagccaatt tgtaggcaaa tctccatatc accttaacac aataaaatta
     1021 atattttata aagcattaga tattttttac ctgatgattt tgattgttaa taataataat
     1081 gtgttttatg acttttgtaa ttattattta ttataaacat tagattatag caagagctct
     1141 aacaggagat cccgatgctc caagcaattt gagcggaatt gctattaagt caaatttttt
     1201 tttatctatt tgagataaat tacatatatt ttctattatt attataccat tttttaaaag
     1261 tattttatgg acaggaaatt ctgattctat tgctgaatcg atactaggac tatcaattgc
     1321 tacagcatta atttttttat tagataggta aatagctgcc tctggagaga gaccaggatt
     1381 tgcatttata taattatcgg aattataatt atgttcccag ccagtagaaa aaacaataga
     1441 atcattttct ttgatatcta tatcactgtt gattatatct tctactgtga taagttgatt
     1501 agatgattta aaaattttta acaaatgaac attcttcatg acaaatctat tgacatcaat
     1561 attatctatg ggctcagcct cttcaataaa atgagaagga gcatctatat gagttccagt
     1621 atgtgtgctt aaaaagattg cttctgaatc atagctgtca atactatatt tagaccactt
     1681 taaaaaataa acatttggag atccaggata aagtttaata ttcgagttta tcgactgact
     1741 tagatctata atcatattat ttgcaaattg catctccttt ttaattattt cagaagaata
     1801 caagataatt taatcattaa atagttgata tcaaataagt gcatttaaat ataaatattg
     1861 tatacaaatc taaaattatt tatagtatat catgcataat aaaataatgt taaaattttt
     1921 aacattatca ttattattaa ttattagtat tattatttta tattgtaata ttccaaatat
     1981 cgcaggagaa ttaggaatga tgccaatcac aactcctaat aaattatcac ctacatatgt
     2041 tatagatatc actactggtt ctggaataag ttataaattc caacactttt atccattaaa
     2101 tatcgcagta cctgtagata caactgttgc atggcttaat ggtgatccag aacaaattca
     2161 tactgttaca agtgatgggc ctggctcatc tgatagtgga aaactattta attcggggat
     2221 tctttcttat ttatcctctt ttcaatatac gtttaatcag ccaggtaaat ttttgtatca
     2281 ctgtgaaatt catcca
//
LOCUS       DATCMF010000191         1622 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_488065, whole genome shotgun sequence.
ACCESSION   DATCMF010000191 DATCMF010000000
VERSION     DATCMF010000191.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1622)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1622)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1622
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_488065"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1385
                     /locus_tag="VIL14_02410"
     CDS             <1..1385
                     /locus_tag="VIL14_02410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522590.1"
                     /translation="GHKKLLTSNQLLYEIQNNSIKYIQDRDKCPICNSKINDKNTLIF
                     DLKQAGENIFNKENSFKKEINLLEQKLKKIETELDEKKGVRQLIEVIITIVNGLIEKR
                     FNFYDELNSISEVYKKYDELKNLNSRIIDDLISSVSEIENNIFSSKELVKNFKERIES
                     EKIKLEKMKKEINIFNKEKNDILLKLQSNKLNLQTYCDDIKVSNIHNLLANFYCNSID
                     ELISKRLNITVRIEEKAKIIENIQEDISYLTEEIEIRGKKIISLRVAEEKLKEKEYLL
                     KHVLFLLGEIDGFISNDIVEGRLSDVLMKSTNFYLIPFTEGRYEIANISSTRRKIKDR
                     ISHGLTLTLVDNKDHITKNKEQLSGGDESALGLALRISISKLMSTIRPFKHVEKKVPM
                     INFIIMDEPMTSLDEFRRNVIMNILMKDQSFKQIFLISHAEINEEENNYHSIVINDNE
                     NSKRMVEYFH"
BASE COUNT          728 a          173 c          223 g          498 t
ORIGIN      
        1 atggacataa aaaacttctt acgtccaatc aactattata tgaaattcag aacaatagca
       61 ttaaatatat acaagataga gataaatgcc caatatgtaa tagtaagatt aacgataaaa
      121 atacattaat atttgatctc aaacaagcag gagaaaatat attcaataaa gaaaattcat
      181 ttaaaaaaga gataaatcta ttagaacaaa aattaaagaa aatagagaca gaacttgacg
      241 aaaaaaaagg agtaagacaa ttaatagaag ttataattac catagtaaat ggattaatag
      301 aaaaacgttt caatttttat gatgagttaa attctatttc agaagtatat aagaaatacg
      361 atgaactaaa gaatttaaat tcaagaataa ttgatgatct tatttcatca gtatcagaga
      421 tagaaaataa tattttttca tcaaaagaac ttgtaaaaaa ttttaaagaa aggatagaat
      481 ctgaaaaaat taagcttgag aaaatgaaga aagaaataaa catattcaat aaagagaaaa
      541 atgacatttt attaaaactt cagtcaaata aattaaattt acaaacatat tgtgatgata
      601 taaaagtatc aaacattcat aatctattag caaattttta ttgcaatagt attgatgagc
      661 taatttcaaa aagacttaat attacagtaa gaattgagga aaaagctaaa attattgaaa
      721 acattcaaga ggatatttct tatctgaccg aagaaattga aataagagga aagaaaataa
      781 tcagtttaag agttgcagaa gagaaactta aagaaaaaga atatttgtta aaacatgttc
      841 tatttttact gggagaaata gatggcttta tttctaacga tatcgttgaa ggaagattgt
      901 ctgatgtttt aatgaaaagt actaattttt atctaatacc ttttacagaa ggtagatatg
      961 aaatcgctaa tatatcatct actaggagaa aaataaagga tagaatatct catggtttaa
     1021 ctttaacttt ggtagataat aaagatcaca taacaaagaa taaagaacaa ctaagtggag
     1081 gggatgaatc agctctcggt cttgcacttc gaatttctat atcaaagctt atgtcgacta
     1141 tcagaccttt caaacacgta gaaaaaaaag tacctatgat aaattttatt ataatggatg
     1201 aacctatgac cagccttgac gaatttcgaa gaaatgtaat aatgaatatt ttgatgaaag
     1261 accaaagctt taaacagatc ttccttatat ctcatgctga aataaatgaa gaagagaata
     1321 attatcattc tatagtaatt aatgataatg aaaattctaa aagaatggtg gaatacttcc
     1381 attaaaaaat cttatttaaa ttatatacac aaatttgtta ttgtaaacta aactaataga
     1441 ctgaaaattg acaatgagta taaattaaat gccaataatt gtagtatgat ataagaacaa
     1501 aaatgacata taaagataaa tctcccttta aaatcatcgc aatttacaga atttgattat
     1561 caatttcttt tttgataatt acatacaata tatcaaggtt taatttatcc attatgaaat
     1621 ta
//
LOCUS       DATCMF010000192         1563 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_488187, whole genome shotgun sequence.
ACCESSION   DATCMF010000192 DATCMF010000000
VERSION     DATCMF010000192.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1563)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1563)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1563
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_488187"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..522)
                     /locus_tag="VIL14_02415"
     CDS             complement(<1..522)
                     /locus_tag="VIL14_02415"
                     /inference="COORDINATES: protein motif:HMM:NF012385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008134 - transcription factor binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma 54-interacting transcriptional regulator"
                     /protein_id="HEY8522591.1"
                     /translation="MNRNELLKIKEETHKYFDEKRGENLSLFESIIGYDDIKKIFKMS
                     LISDKAVHILLVGPPASAKTLFMLEFLKLERSYFTLGSHSTKAGMIDYLFDYRPRYLL
                     VDEIEHMPYKDQTSLLSIMETGILTETKSQKTRSTQLKTWIFATCNNKEKLLSPLLSR
                     FIIFHLKPYNRDKF"
     gene            647..829
                     /locus_tag="VIL14_02420"
     CDS             647..829
                     /locus_tag="VIL14_02420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522592.1"
                     /translation="MTDVSINEDEKHLVLFALNQLAEMIEEGNIKEEDFKVTEYDFIN
                     LSSIYELKDRLEAEIM"
     gene            complement(883..>1563)
                     /locus_tag="VIL14_02425"
     CDS             complement(883..>1563)
                     /locus_tag="VIL14_02425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522593.1"
                     /translation="LFLPCRFSLLAIENFIQKSSDISSSITPFMATKIKEMLKKENKD
                     DTIDIYSKENIKIFDIVVNTRKEICIACVSLDQIFSFNYIEVLKSILKNNIKLKILLC
                     DPHSEMLNHIKYLSVFPNIYESLTSCLSKLCNMKIVSLSTKELSNFEIRIYKTILPHN
                     LIIRDRDIQGSGILLLEPYLFGINSQNRKIYQIYKRKNQEIFDLHFKSFLKLWETSPE
                     YSCEWEEL"
BASE COUNT          543 a          202 c          202 g          616 t
ORIGIN      
        1 aaatttatct cgattatatg gttttagatg gaaaataata aatctagaaa gaagtggaga
       61 taataatttt tctttgttat tacatgttgc aaaaatccat gttttcaatt gtgtactacg
      121 agtcttttgt gactttgttt cagttagtat ccctgtctcc attatactta gtaaggatgt
      181 ctggtccttg tatggcatat gttctatttc atctactaat aaatatcgtg gacgataatc
      241 aaataaatag tcaatcattc ctgctttggt actatgacta cctaaggtaa aatatgatct
      301 ttctagcttt agaaattcca acataaacaa tgtcttggct gaagcgggag gaccaactaa
      361 tagaatatgt actgctttat ctgatatcaa tgacatttta aaaatttttt ttatatcatc
      421 atatcctatt atactttcaa aaagactcaa attttcaccc cttttttcgt caaagtattt
      481 atgagtttcc tctttaattt ttaatagttc atttctgttc atttattata agtaaagatt
      541 attcctatct attttttatt tctttttaat ataatggcag taagttcttt atttttagat
      601 attaatctag gaaaagaaaa atataggttg catgtaagaa tatacattga ctgatgtttc
      661 aatcaatgaa gatgaaaaac atttagttct atttgcttta aatcaattag ctgaaatgat
      721 tgaagagggc aacattaaag aagaagactt taaggtaact gagtatgatt ttattaattt
      781 atcttccata tatgagctaa aagatagatt agaagcagaa attatgtagt tgtaattatt
      841 atttcttgtt ttttgattaa taagtaaaaa atctaagaaa attcacaatt cttcccattc
      901 acaagaatac tcaggactag tctcccacaa ctttaaaaaa gacttgaaat gtaaatcaaa
      961 aatttcttgg ttttttcttt tatatatttg atagattttt cgattctgtg agtttattcc
     1021 gaacaaataa ggctccagta aaagaattcc actaccttga atatctctat ctcttattat
     1081 tagattatga ggtaatattg ttttataaat tcttatttca aaatttgata attctttagt
     1141 agataaagat acaatcttca tattacagag tttggaaaga caagaagtaa gactttcata
     1201 aatatttgga aacacactca aatattttat atggtttagc atttcagaat ggggatcaca
     1261 aagtaaaatt tttaatttta tattattttt taatatactt ttcaatactt caatataatt
     1321 aaaagaaaaa atctggtcaa ggctaacaca agcaatacat atttcttttc ttgtatttac
     1381 aactatatca aagattttta tattctcttt tgaatagata tcaattgtat catctttatt
     1441 ttcttttttc aacatttctt ttattttagt tgccataaac ggagttattg atgatgatat
     1501 gtcgctactc ttttgaataa aattttcaat tgccaataag gaaaacctac atggaagaaa
     1561 taa
//
LOCUS       DATCMF010000193         2011 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_488242, whole genome shotgun sequence.
ACCESSION   DATCMF010000193 DATCMF010000000
VERSION     DATCMF010000193.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2011)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2011)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2011
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_488242"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(10..597)
                     /locus_tag="VIL14_02430"
     CDS             complement(10..597)
                     /locus_tag="VIL14_02430"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013053.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismatase family cysteine hydrolase"
                     /protein_id="HEY8522594.1"
                     /translation="MNNRYAILVIDMLNDFINGKLRLEGVEKIIPNIQNLLECARKHN
                     IPIIYCNDSHLPEDRELKIWGKHAMKGSKGAQIIKELKPMPNDHIITKNTYSAFFNTK
                     LKELLQSFYKGQGANFLVVTGIHTDICVKHTVYDAFLNGFNITVAEDGVKALPLVDKP
                     ILKYMKEKYDIKISKIKDILQQLYRFDQHVSIFTL"
     gene            complement(657..>2011)
                     /locus_tag="VIL14_02435"
     CDS             complement(657..>2011)
                     /locus_tag="VIL14_02435"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: protein motif:HMM:NF006696.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004514 - nicotinate-nucleotide
                     diphosphorylase (carboxylating) activity [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HEY8522595.1"
                     /translation="FYNSSSLSTDFYELTMASAYFSSHQNDKVAIFELFVRKLPTNRN
                     YLVAAGLNHVIDFLLNLKFKTEHIDYLKTHDILKGSDEKFFDYLLQLKFTGNLWAVPE
                     GSIIFANEPIIRIEAPIIEAQLVETFILSLINFQTLIASKASRIVNASHGTPIIEFGF
                     RRAHGPLAALLASRSSFIAGCSGTSNTLASYEFGIPSNGTMAHSFIMSFEDEESAFKE
                     FLKVFPDAFLLIDTYDSIKAVKKIIQNKIKCKGLRIDSGDLLKLSKVIRKLLDDKGYY
                     STKIMASGDLNEYIINDLKNKKAPIDFFGVGTELTTSRDEPVLNGIYKLVAIKQYSKT
                     KNKYEILYKMKTSINKISYPCPKQIFRFEKNNRFIKDIIALENENIDNANPLLLQYLK
                     NGQLIQKLPTLHEIKKYHQKQITSLPEIFKKIDNEKVKYPISLSRKLQIIIKELKTRN
                     "
BASE COUNT          640 a          285 c          246 g          840 t
ORIGIN      
        1 taatttagct tataaagtaa aaatagaaac atgttgatca aatctataca attgctgtaa
       61 gatgtcttta attttactta ttttgatatc atatttttct ttcatatatt ttagtatcgg
      121 tttatcaact agtggtagtg cttttactcc gtcctcagca actgttatat taaaaccatt
      181 taagaaagca tcgtatacag tatgcttaac gcaaatatcg gtatgaatac ctgttactac
      241 aagaaaattt gcaccttgtc ctttataaaa agattggagt aactctttta gttttgtatt
      301 aaaaaatgca ctataagtat tctttgttat tatatgatca ttgggcattg gctttagttc
      361 tttaattatt tgtgctcctt tcgatccttt cattgcatgt tttccccaga tttttaattc
      421 tctgtcttct ggaagatgtg aatcattgca atatattatg ggaatattat gctttctagc
      481 acattcaagt aagttttgaa tatttggtat aattttttca actccttcca atcttaattt
      541 tccattaata aaatcattta acatatctat tactaaaata gcatatctgt tattcataaa
      601 tttctcatat taataataat gataatttta tatttatacc attattcttt attaatctaa
      661 ttcctagttt ttaattcttt tattattatt tgtagttttc tgcttaatga aataggatat
      721 tttacttttt cattgtcgat ttttttaaat atttcaggta gagatgttat ttgtttttga
      781 tgatattttt ttatttcatg taaagttggc aatttttgta ttaattgacc gttttttaga
      841 tattgaagca aaagtggatt tgcattatct atattctcat tttctaaagc aattatatct
      901 tttataaatc gattgttttt ttcaaatcta aatatttgtt ttggacaggg ataagaaatt
      961 ttattaatag acgttttcat tttatataat atttcatatt tgtttttagt tttagaatat
     1021 tgtttaatag ctactaattt ataaatgcca tttaaaactg gttcatctct tgaagttgtt
     1081 aattctgttc ctactccaaa aaaatctatt ggagcttttt tgttttttag atcatttatt
     1141 atatattcat ttaaatctcc acttgccata atcttagttg aataatatcc tttatcatca
     1201 agtaattttc ttataacttt acttaatttc aaaagatctc cactatctat tcttaatcct
     1261 ttacatttta ttttattctg tattatcttt tttacagctt tgatactatc atatgtgtct
     1321 attagtaaaa aagcatctgg aaatactttt aagaattctt tgaatgctga ttcttcatct
     1381 tcaaaactca ttataaatga gtgagccata gttccattgc ttggaattcc aaattcgtat
     1441 gatgctaatg tattagaagt ccccgaacat ccagctatga aacttgatct acttgctaat
     1501 aatgctgcta gtggtccatg tgctcttcta aaaccaaatt ctattatagg agtaccatga
     1561 gacgcattaa ctattcgtga agcctttgat gcaatcagag tttgaaaatt aattaatgat
     1621 aaaataaaag tttcaaccaa ttgtgcctca attattggcg cttctattcg tattattggc
     1681 tcattggcaa aaattataga tccctctgga actgcccaca gattaccagt aaacttcaac
     1741 tgtaaaagat aatcaaaaaa tttttcatct gatcctttga gtatatcatg agtttttaaa
     1801 tagtcaatat gttcagtttt aaattttaaa tttaaaagaa aatctataac atggtttaat
     1861 cctgcagcaa ctaaatagtt tctattagtt ggaagctttc ttacaaacaa ttcaaatata
     1921 gctactttat cattttgatg tgaagaaaaa tatgcagatg ccatagtcaa ttcataaaag
     1981 tcagtactca aagaagaact attgtaaaac t
//
LOCUS       DATCMF010000194         1910 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_554899, whole genome shotgun sequence.
ACCESSION   DATCMF010000194 DATCMF010000000
VERSION     DATCMF010000194.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1910)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1910)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1910
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_554899"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            409..681
                     /locus_tag="VIL14_02440"
     CDS             409..681
                     /locus_tag="VIL14_02440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEY8522596.1"
                     /translation="MKNRSRNEIIAFILESVANSRNSNGITATKIMYSAFLSYSQLKE
                     YLALLLEKELLGYYSDTQTYKVTSKGTHYLSIHKQLNDMIVTASQF"
     gene            850..1419
                     /locus_tag="VIL14_02445"
     CDS             850..1419
                     /locus_tag="VIL14_02445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522597.1"
                     /translation="MSVYFCFYDLSIREQEIIYTLLGKTFYVIEEKLSFDDMESQLPN
                     FLSITDYSITFVELSFPVKFNNYLFQTISVEHWNSIKNIIKEIKHRRGNKPVICIFKF
                     KGNTNQTDFNIIFSITNSSVHSFEIAIEKVEYLVDIVPTQLSSLPPNTIEVFYLYDES
                     SSKWVPYQAKSIAQNYVSTYIYKNGSWEG"
     gene            1481..1564
                     /locus_tag="VIL14_02450"
     tRNA            1481..1564
                     /locus_tag="VIL14_02450"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1515..1517,aa:Ser,seq:gct)
     gene            1540..1674
                     /locus_tag="VIL14_02455"
     CDS             1540..1674
                     /locus_tag="VIL14_02455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522598.1"
                     /translation="MGSNPTPRAYLGFLQNVIRFDTRYLSLDKQQGKRRKKKEMMNKF
                     "
BASE COUNT          757 a          257 c          236 g          660 t
ORIGIN      
        1 ttacggaact atattattgg atatatacat gatatataat ggatcaaaga ctaatgttgc
       61 aaatttatca ttttctatag atgataataa caataacaat aaaaatgata agaataaaca
      121 caaacagcta tagttaaatg caagtaatta ttctttttaa tttaattacg ttaaaattga
      181 gtcaaatata tcactatatt tcctataatg tattaattat atcaataata tatctcaatt
      241 cattattcta attaaatata aaaaaattta ctataatact ttaatatctt caatactttc
      301 tattatatta catatacttc ttgtagaatt tcaaaaatcc atattctctc tattttttta
      361 aattaattct ttcttaatct taacatatga atgtaaatat taataaacat gaagaataga
      421 agcagaaatg aaattatagc tttcatacta gaatcggtag caaatagcag aaacagtaat
      481 ggaattacag caaccaaaat tatgtatagt gcattcttat cttattctca gttgaaagaa
      541 tatcttgcat tattactaga aaaagagcta cttggatatt actctgatac ccagacttat
      601 aaagtgactt caaaaggaac tcattattta tcaatacata aacaactaaa tgatatgata
      661 gttactgcta gtcaatttta attaaatatc acaaactatt attttatttt ttgtttctat
      721 tgcaaatata atagtaaaaa ggtttcttat acaatattca acaatcgccc cacatgtaat
      781 atctattcta aaacttttag atacgaaact ataaattttg tcttatttta ttaatatata
      841 tttcttaaaa tgtcagtata tttctgtttt tatgatcttt caattcgaga gcaagaaata
      901 atttatactc ttttaggaaa aacgttctat gttatagaag aaaaattatc atttgatgat
      961 atggagagcc aacttccaaa ttttctttca attactgatt attcaattac gtttgtcgaa
     1021 ctaagttttc cagttaaatt taataattat ctctttcaga ctatttcagt tgaacattgg
     1081 aattctatca aaaatataat aaaagaaata aaacatagac gaggaaataa acctgttata
     1141 tgtatcttta aatttaaagg taatacaaac caaacagatt ttaacattat tttttctata
     1201 acgaatagct cagttcattc attcgagatt gcaatagaaa aagtagaata tcttgtagat
     1261 atagtaccta cacaattaag ttctttacca cctaatacta ttgaagtttt ttatttgtat
     1321 gatgaatcat cctctaaatg ggttccatat caagccaaaa gcattgcaca aaattatgtc
     1381 agtacatata tttataaaaa tggttcatgg gaaggataat aaattaatat gtctttattt
     1441 tttaaacagt agtatactcc ttacaagtac ttatgtttga gcgggggtcg cctagcctgg
     1501 tagggcgtgg gattgctaat cccatgttcg aaagaactcg tgggttcgaa tcccactccc
     1561 cgcgcttatc ttgggttcct ccaaaatgtt ataagatttg atacgagata cttatcgtta
     1621 gataaacagc aaggaaagag aagaaaaaag aaggagatga tgaacaaatt ttgactctta
     1681 atttacaaaa aacaagagaa ctcattacac atagtgatga ggaaaaaaaa ttagaaaaaa
     1741 aggttagagt caattacaaa atcacttcga aaacaatatt ttaaaaatag tcttgtgact
     1801 ttatccaaga aaaatataga aaatgctaga actatctgta attatattat tgcagaacaa
     1861 acagaaataa acataaaaga ttctacaaaa gaagagtaaa accatagtaa
//
LOCUS       DATCMF010000195         2354 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_171608, whole genome shotgun sequence.
ACCESSION   DATCMF010000195 DATCMF010000000
VERSION     DATCMF010000195.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2354)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2354)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2354
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_171608"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1124)
                     /locus_tag="VIL14_02460"
     CDS             complement(<1..1124)
                     /locus_tag="VIL14_02460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HEY8522599.1"
                     /translation="MTEVIVAKFGGSTIGQNGDQIPTVIERIKAMRKEEKKIVAVFSA
                     PLMEHEGKVKSMTDIAINIGRKYASGQTVDTNIFYRTYLNIAKKYLSQKYFEEFEFHL
                     NKFYNYVTSSLNHVAQNKRFIDVTRSRILAYGGEITMSYLMDYIMRSNGLKCDHVDIE
                     KWPIITDDNFEAANFMLEESKEHKKHFLKLLEENEVISIGGFIGKTIDGLETTYERGG
                     SDRTAADIAIILYDEFKVQIDFEKDNIVLSADPKIVKEELESIRYLSYNEARLAGMFG
                     MKILDPIAIKEIDDNNFDIPIVITSLLNPSDITIIEKSLINRKHDSLDSVENYDDDDD
                     DSSLIKIVTGKRNCVIVRMESIAASYLIASLEKDKRYYNF"
     gene            complement(1176..2210)
                     /locus_tag="VIL14_02465"
     CDS             complement(1176..2210)
                     /locus_tag="VIL14_02465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016758 - hexosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY8522600.1"
                     /translation="MFFFISPIGLGHAARDIAIIHNLNFKNNDNKVNFVTGSAAYTFL
                     KSYGWKAFNLYDPPKFEIECGKLNHSFRWLIKYFLYYKKCKEIATNIIDANLEKLIVS
                     DEDFASISIAEEKNLRRILITDIINTSFTKGITSIIEKKMNKKLCQIIKKCDCVIIPD
                     YGDDTENFRYVGPIVREILESRETLRKRFNFTKKTIVVSVGGTDAGKYLIEKVIDSFR
                     RLKTKLDIDLIVVTGPTLEINPAEDFHLLRYVPNLNEYIYASDLIISLAGRSTMDESI
                     VYNIPGIFIPLKNHYEQEECAKRLGFEYKDILRLDKLIEEKLSSNSDMRKNNVSNGAK
                     KAAEIISSFI"
BASE COUNT          746 a          393 c          254 g          961 t
ORIGIN      
        1 aagaaattat agtatcgttt atccttttca agtgatgcaa ttaaatacga agcagcaata
       61 ctttccattc tgacaataac acaatttctt tttcctgtta caatcttgat taatgaacta
      121 tcatcatcat catcatcata attttctaca ctatctaaag agtcgtgttt tctattaatc
      181 aaagattttt caattatagt aatatcagaa ggattcagta aagatgtaat tactataggg
      241 atatcaaaat tattgtcatc aatttcctta attgcaatag gatctaaaat cttcatacca
      301 aacataccag ctaatcttgc ctcattatac gataaatatc gtatagattc caattcttct
      361 tttactattt ttggatctgc gcttagtaca atgttatctt tttcgaaatc tatttgtact
      421 ttaaattcat catatagaat tattgcaata tctgctgcag ttctatcaga ccctcccctt
      481 tcatatgttg tttcaagtcc atcaattgtt tttccaatga atcctccaat agatattact
      541 tcattttctt caagtaattt aagaaaatgt tttttatgtt ctttagattc ctctaacatg
      601 aaattagctg cttcaaaatt atcatcagta attatcggcc atttctcaat atcaacatgg
      661 tcacatttta acccattact tctcattatg taatccataa gatatgacat ggtaatctct
      721 cctccatatg caagtattct tgatctagta acatcaataa accttttatt ttgagcaaca
      781 tgatttaacg aagatgtaac ataattataa aatttattaa gatgaaattc aaattcttca
      841 aaatattttt gagataaata ttttttggct atatttaaat atgttctata gaaaatattt
      901 gtatctactg tttgaccaga agcatatttt ctaccaatat ttatggcaat atctgtcata
      961 gatttgactt ttccttcatg ttccattaat ggtgcagaaa aaacagctac aatttttttc
     1021 tcttcttttc tcatagcctt tattctttct atcacagtag gaatttgatc accattctgg
     1081 ccaatagtac ttcctccaaa ttttgcaaca ataacttcag tcatacatta tacctatcct
     1141 attgtaattt ttgttatatt attaatgtat tacatctaaa taaaacttga tatgatctca
     1201 gccgcttttt ttgctccatt gctcacatta ttttttctca tgtccgaatt tgagctaagt
     1261 ttttcctcaa ttaatttatc aagtcttaat atatctttat attcaaagcc cagccttttg
     1321 gcacattctt cttgctcata atgattttta agaggtataa atattccagg aatgttataa
     1381 actatggatt cgtccattgt agatctacct gctaatgata ttattaagtc agaagcataa
     1441 atatattcat tcaaattagg tacatatctt aacaaatgaa aatcttcagc tggatttatt
     1501 tctagagtgg gcccagttac aacaataagg tctatatcta attttgtctt taatcttcta
     1561 aaagaatcaa taactttttc tattaggtat tttccagcat cagttccacc aacgcttaca
     1621 acaattgttt ttttagtaaa attaaatctt ttacgtaatg tttccctact ttcgagaatt
     1681 tcccttacaa ttggtccaac gtatctaaaa ttttctgtat catctccata atcaggtatt
     1741 attacgcaat cacatttctt tataatttga cataatttct tgttcatttt tttttctatt
     1801 attgatgtta tacctttggt aaaactagtg ttaattatat ctgtaattag aattcttctt
     1861 aaattttttt cctctgctat agaaattgat gcaaagtctt cgtcactgac tattagtttt
     1921 tcaagattcg catctataat gtttgttgca atttctttgc attttttata atataaaaaa
     1981 tactttatta accatctaaa ggaatgattt agttttccac actcaatttc aaacttaggt
     2041 ggatcgtata aattaaaggc tttccatcca taacttttta aaaatgtata tgctgcagaa
     2101 ccggtaacaa aatttacttt attatcatta tttttaaagt ttaaattatg aattattgct
     2161 atatcccttg ctgcatgacc aagacctatg gggcttataa aaaaaaacat ttatctatac
     2221 aattgtttcc ttctttttgt attttactgt ttcaaattaa tttctctatt agttagtttt
     2281 aaattctaat tttgccttgt aaattagaat tgttttacta gataaagttt ataatgttta
     2341 attattccaa ttaa
//
LOCUS       DATCMF010000196         1563 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_554979, whole genome shotgun sequence.
ACCESSION   DATCMF010000196 DATCMF010000000
VERSION     DATCMF010000196.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1563)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1563)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1563
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_554979"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1000
                     /locus_tag="VIL14_02470"
     CDS             <1..1000
                     /locus_tag="VIL14_02470"
                     /inference="COORDINATES: protein motif:HMM:NF014803.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522601.1"
                     /translation="EEEEEYVQVLRNGITKVVVSSFNGMTNLVKAAEKTNIKPQTLIR
                     INPEVSVKAEIRASYKNGKFGVPFNGETIDSAFKIVKHIVNNEFLNFDGFHFHLGSQI
                     TNFSCYSNTFSKLDAFISKIKKDIPSFTINTIDIGGGTPVFYNQPVPTPKQMAENYIT
                     KLNQLADDHGIFELIIESGRFLVAESAILLSRIVNTKEYNGHKIVIVDAGYHVLLDSA
                     LMKQEYPQEVIDSNNTTIYRKNSSFSPKNIHVAGRLCDTYDVFPLSEVSNLDHARIGN
                     YISFYNVGAYSVVFNMPFHCQTKPPIVMKTSSGDFKLVRKGTTYENLFEEEGGYIP"
     gene            1046..1378
                     /locus_tag="VIL14_02475"
     CDS             1046..1378
                     /locus_tag="VIL14_02475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylphosphatase"
                     /protein_id="HEY8522602.1"
                     /translation="MIQNNTDSNSNSNKEINDSSQYITVHLIISGKVQGVYFRKHTQD
                     ISLQNNVCGWAKNLVNGDVECILEGVKSNVDKVIIWCHQGPPNSRVDNVEIKNEKFTG
                     DFTDFKIM"
BASE COUNT          560 a          203 c          243 g          557 t
ORIGIN      
        1 agaagaagaa gaagagtatg ttcaagtctt acgaaatggt ataactaaag tagtagttag
       61 ctcgttcaat ggaatgacta atcttgtaaa ggctgcagaa aaaactaata ttaaaccaca
      121 aactttgata agaataaatc cagaggttag tgtaaaagct gaaattcgag cttcatataa
      181 aaatggaaaa tttggagtac cattcaatgg agaaacaatt gatagtgcct tcaaaattgt
      241 taaacatatt gtaaataatg aatttcttaa ttttgatggc tttcactttc atttagggtc
      301 acaaataact aatttctctt gttattctaa tacattctca aaattagacg cgtttatttc
      361 taaaataaaa aaagatattc cctcttttac gatcaatact attgatattg gaggtggaac
      421 tcctgtattt tataatcaac cggttcctac tccgaaacag atggctgaga attatattac
      481 taaacttaat caattagcag atgatcacgg tatatttgaa ttgataattg aaagtggacg
      541 atttttagtt gcagaatcag ctattctctt atcaagaatc gtcaatacga aagaatataa
      601 tggacataaa attgttattg ttgatgctgg ctatcatgtt ttattggatt cagctttgat
      661 gaaacaagaa tatcctcaag aagttataga tagcaataat actactattt acagaaaaaa
      721 ttctagcttc tctccaaaga atattcatgt ggcaggacga ttatgtgaca cttatgatgt
      781 atttccttta tcagaagtat ctaatcttga tcatgctaga ataggtaatt atatatcatt
      841 ttataatgta ggagcgtatt ctgttgtatt taatatgccg tttcattgcc agactaagcc
      901 tcctatagtt atgaaaacta gttctggaga ttttaaatta gttaggaaag gaacaacata
      961 tgaaaatctt tttgaagagg aaggaggcta tattccataa atttatctca taatttatat
     1021 ttgattctat attctcattt tttacttgat ccaaaacaat actgatagta atagtaactc
     1081 aaataaagaa attaacgatt catcacaata cattacagtt catttgatca tctctggaaa
     1141 ggttcaagga gtatatttta ggaaacatac tcaagatatt tcactacaaa ataatgtttg
     1201 tggatgggct aaaaatttag tgaatggtga tgttgaatgt atactcgaag gtgtaaaatc
     1261 taatgttgat aaagttataa tatggtgtca tcaaggtcca cctaatagcc gtgtcgataa
     1321 tgttgaaata aaaaatgaaa aatttaccgg ggattttact gattttaaaa taatgtaaac
     1381 taggcaacta acaattatta tttaatttta ataaaattaa atattacaat caatttatat
     1441 tttgatatac acggataatt tcttccttta atttttcaag atcttccttg ttggaaattt
     1501 tgtatattac aggtatttct tttctatttt ttttagttgc tattattaat tcttctctag
     1561 tag
//
LOCUS       DATCMF010000197         1581 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_488902, whole genome shotgun sequence.
ACCESSION   DATCMF010000197 DATCMF010000000
VERSION     DATCMF010000197.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1581)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1581)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1581
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_488902"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..295)
                     /locus_tag="VIL14_02480"
     CDS             complement(<1..295)
                     /locus_tag="VIL14_02480"
                     /inference="COORDINATES: protein motif:HMM:NF012547.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uL30 family ribosomal protein"
                     /protein_id="HEY8522603.1"
                     /translation="MVYLVIRIRGIVNIPSWAEKTLENLNLRKKFNATIVTENNQTLG
                     MLRKVKDTVAWKSVDESIIKELLEKRGRIKGLHPLNNSGLPSNYKTIDDLANAI"
     gene            complement(305..925)
                     /locus_tag="VIL14_02485"
     CDS             complement(305..925)
                     /locus_tag="VIL14_02485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HEY8522604.1"
                     /translation="MSHQFRREEKQVEWKPRTTLGMLVAGGKISSMEQVFENGMRIQE
                     SEIVKQLLPDMKSQVVHVGIVQKQTDAGEMTRFDALVAVGNEAGWFGIGKGKAAQMRN
                     AIDKATTASYLNVIPIKLGCGSWECRCNQLHSIPFQVSGKGGSVTLEILPGPRGLGLV
                     AGEDIKKLLKLAGLKDAWTKSYGSTNTMASTTKAIFNALRSTYTAG"
     gene            complement(922..>1581)
                     /locus_tag="VIL14_02490"
     CDS             complement(922..>1581)
                     /locus_tag="VIL14_02490"
                     /inference="COORDINATES: protein motif:HMM:NF006342.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HEY8522605.1"
                     /translation="VHTLKRIRERKTNYHKRSSLLLSKKRFITIKVTNQNILTQILEP
                     SISGDKVITSAHSTNLPKLGWKGSLNSLPACYLTGLLLGKKAVFKGIDNAILYTGKDT
                     FTERTSACLKGIIDGGITIPSSEDSFPSTERLSGEHISTYASSLKSDAETYNKRFSTI
                     IKNGLNPENYKSHFEECKDKIMNIDVQNFIQSENSNVAKSNKTKDEDVDQTKEGGGIN
                     K"
BASE COUNT          451 a          308 c          220 g          602 t
ORIGIN      
        1 gaattgcgtt agctaaatca tcgatagttt tataatttga tggaagaccc gaattattta
       61 atggatgtaa tccttttatt ctacctcttt tttccaagag ttctttaata atggactcat
      121 caaccgattt ccatgcaaca gtgtctttca ctttacgtaa cattcctaaa gtttgattgt
      181 tttctgtaac tattgttgca ttaaactttt ttcttaagtt taaattttct aaagtttttt
      241 ctgcccagct tggaatatta actatccccc gaattctaat aactagatag accatattgc
      301 atcattaacc tgcagtatat gtacttctta aagcattgaa tatagctttt gtggttgaag
      361 ccatagtatt tgttgagcca taggattttg tccaagcatc ttttagtcca gccaatttta
      421 atagtttttt aatatcttct cccgctacca aacctaatcc tctagggcca ggtaatatct
      481 caagcgttac acttccaccc ttccccgata cctggaatgg aatagaatgt aattgattac
      541 atctacattc ccaactacca catccaagtt taattggaat aacatttaga taagatgcgg
      601 tagtggcctt gtcaattgca tttcgcattt gggccgcctt gcctttacct attccaaacc
      661 atccagcctc atttcctaca gcaaccaatg catcaaatct agtcatttca ccagcatcag
      721 tttgtttttg aacaattccg acatgtacta cttggctttt catatcggga agtaattgtt
      781 ttacaatttc agattcttgg attcgcattc cattttcaaa aacttgttcc atagaagata
      841 tcttgccacc tgcaacaagc atacctaatg ttgtcctagg tttccattct acttgttttt
      901 cttctctacg aaactggtga ctcatttatt tataccccct ccttctttgg tttgatctac
      961 gtcctcgtct ttagttttat tagacttggc cacattacta ttttcacttt ggataaaatt
     1021 ttgaacatct atattcatta ttttatcttt acactcctca aaatgacttt tataattctc
     1081 aggatttaaa ccatttttta taatagtgga aaatctttta ttataagttt ctgcatcaga
     1141 ctttaacgat gatgcataag ttgatatatg ctcaccagaa agacgttcag tgctgggaaa
     1201 agagtcttca gatgaaggta ttgtaattcc accatctatt atacctttta aacatgcgga
     1261 tgtcctttct gtgaatgtat cttttcctgt ataaagtata gcattatcaa ttcctttaaa
     1321 aaccgctttt tttcctagta ataatccagt caagtaacat gcaggaagag aatttaaaga
     1381 acctttccaa ccaagttttg gtaaattagt actatgagca gatgtgatta ccttatcacc
     1441 actaatagat ggttctaata tttgggttaa aatattttga tttgtaactt ttatagttat
     1501 aaacctcttt ttacttaata ataacgatga gcgtttatga taattagttt ttctttctct
     1561 aattctcttt aaagtatgta c
//
LOCUS       DATCMF010000198         2646 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_172601, whole genome shotgun sequence.
ACCESSION   DATCMF010000198 DATCMF010000000
VERSION     DATCMF010000198.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2646)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2646)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2646
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_172601"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1169)
                     /locus_tag="VIL14_02495"
     CDS             complement(<1..1169)
                     /locus_tag="VIL14_02495"
                     /inference="COORDINATES: protein motif:HMM:NF024777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LamG domain-containing protein"
                     /protein_id="HEY8522606.1"
                     /translation="MKNSDRKFQLLSAVLITLFCCILLINSNYVLVESQTSPTFLTLA
                     GSNFLDIENSERLQLKDFTLSTWFRTDKQDYLEPATIVNKGGMNDDAAGKNMNYGIWI
                     TPEEFLQGGFETQRGTNIFVTSKQKFNDGNWHNAILTNDGLFLKLYVDGVEMAKVSTL
                     GAIPDMQGLQSIRIGANSLNLDKFFTGDIDEVILWERALSLEEIFNFYNYDEIPSNGR
                     ILYLPFSSISPIQSSYKYQPFKTFEQTEKEVIEKEETFHLSNFSLGTWFRIDRIDHNG
                     PVILLNKGGFGGERPGENLNFGIWLNPSETIEGGFETKPGTNVFVSSQEKYNDGLWHY
                     VFLTYDNKILKLYIDGVLADSKITSGAIPDNSGDQDFVIGGNSFMDDKFFKGDLD"
     gene            1581..>2646
                     /locus_tag="VIL14_02500"
     CDS             1581..>2646
                     /locus_tag="VIL14_02500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522607.1"
                     /translation="MLKFLKSNKGLVYIIFGNIFGALLTGGFWLLLASLQSVEEYGET
                     SYMISMASLASSFALLGLNTAITTFIPKGDDKIHVAANQVILISSIIAALIVAQRDWL
                     LGLFVVGMTFWMMSIYEFLGRKSYKQYAIANIGARGCQLLLSIIFYYIIGIPGIIIGF
                     TVSFFLFSHRYFLSIKYFKKDFSEISGKMKFALHSYSFNMSNALLMYLDKIIIPSIFG
                     YAILGYYQLGFQFLMFLGMVPISFFQYLIPEESSGHKKAKLRIIGFGLSIGLAALLYF
                     LSPTLINVFFPQYENSLDAIRVISIGIIPMMIAYIINSKFLSEGNTQGVVIGAIIYQI
                     LQITLMILLGRLIEVTGIALS"
BASE COUNT          876 a          407 c          395 g          968 t
ORIGIN      
        1 tcatcaagat ctcctttgaa gaacttgtca tccataaaag aatttcctcc gattacaaag
       61 tcttggtctc cgctattatc aggaattgca cctgaagtaa ttttactatc tgctagcaca
      121 ccatcaatat ataactttaa aattttattg tcatatgtta aaaatacata atgccataga
      181 ccatcattat atttttcttg tgatgaaaca aatacattag ttccaggttt ggtttcaaat
      241 cctccttcta tggtctctga gggattcaac cagataccga aattaaggtt ttccccagga
      301 cgctctcctc caaaaccacc tttattcaat agaattacag gtccgttatg gtctattcta
      361 tcgattctaa accacgtacc aagtgagaaa ttacttagat ggaatgtctc ttctttctca
      421 ataacctctt tttcagtttg ttcaaatgtt ttaaacggtt gatatttgta agatgactga
      481 ataggagaaa tggatgaaaa gggaagatat aagattctac cattggatgg aatttcatcg
      541 taattgtaaa aattaaaaat ttcttctagc gataaagccc gttcccaaag aattacctca
      601 tctatatctc cagtaaaaaa tttatcgaga ttcagtgaat tggcacctat tcttatggat
      661 tgtaatcctt gcatatccgg gattgcacct aaagtagata ctttagccat ttcaactcca
      721 tctacataca atttcaaaaa taagccgtca ttagtaagta tagcattatg ccaatttcca
      781 tcgttaaatt tttgttttga ggtaacgaaa atattggttc ctctttgggt ttcaaatcct
      841 ccttgaagaa attcttctgg agtaatccaa ataccataat tcatattttt tccagcggca
      901 tcgtcgttca ttccaccttt gttcacaatc gttgcgggtt ctaaatagtc ctgcttatct
      961 gttctaaacc aagtagacaa ggtaaagtct tttaattgta atctttcgct attttcaata
     1021 tctaaaaagt tagacccagc aagggtaaga aatgtaggtg aagtttgaga ttcaactaat
     1081 acataattcg agttaattaa taaaatacaa cagaaaagag taattagtac agccgataat
     1141 aactgaaatt ttctatcgga atttttcata taatttgctc ctagattttt ttaacattta
     1201 gtctactatt taaaaatacc cctatgatcc tctaacgtta ccttttccat tcaaaatact
     1261 attagatata ttctttcgat aactaagttg tcctaaaatc ttctcatcca tttatatgaa
     1321 aaaggtttct aaatatttat agcaaaccca attttgtttt ataattatta ttcatatgta
     1381 tgatatatta tatagttcct atcacttttt caaatactag accagaaaga tgatatttaa
     1441 caatgaaata aaaaaaacga ctagaatctt gtaaaataag aattctctat ttacctcttc
     1501 ttaatgaaaa taatcgttta aacgatataa actattttat gtatagttta ttttataaat
     1561 aaaagataaa gggaatataa ttgctaaagt ttctaaaatc taacaaaggt ttagtatata
     1621 tcatatttgg aaatatcttt ggtgctttat taacaggagg gttttggctt ttgctagcat
     1681 ccttgcagag tgtagaagag tacggagaaa ctagttatat gatttcaatg gcttccttgg
     1741 cctctagttt tgctcttttg gggttgaata cagctattac aactttcata cctaaagggg
     1801 atgataaaat tcatgttgca gcaaaccaag ttatattaat ttcaagtatt attgctgcgt
     1861 taattgtagc acagagagat tggttattag gtttattcgt agttggaatg actttttgga
     1921 tgatgagtat atacgaattc ctcggaagga aatcatataa acaatatgca attgcgaata
     1981 ttggagctag agggtgtcaa cttttacttt caatcatctt ctattatatt attggcattc
     2041 caggaattat aattggtttt acagtctctt ttttcttatt tagtcataga tattttcttt
     2101 caataaaata ttttaaaaaa gactttagtg agattagtgg aaaaatgaaa tttgctttac
     2161 atagttattc attcaatatg tcaaatgcat tattaatgta cttagataaa attattatac
     2221 cttccatttt tggatatgct attttaggat attatcaatt aggttttcaa tttttgatgt
     2281 ttctaggaat ggttccaatt agctttttcc aatatcttat tccagaggaa tcaagtggac
     2341 acaaaaaagc aaagttaaga ataataggat ttggattatc tataggtcta gcagctttac
     2401 tctatttttt gagtccaact ctcataaatg tatttttccc tcaatatgag aattcattag
     2461 atgctataag agtaattagc attggaataa ttccaatgat gatagcatat attattaatt
     2521 caaaattctt aagtgaaggt aatacgcaag gtgtagttat tggagcaatt atttatcaaa
     2581 tattacaaat taccttaatg attttgcttg gacgattgat tgaagttaca ggtatagcgc
     2641 tttctg
//
LOCUS       DATCMF010000199         2172 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_43507, whole genome shotgun sequence.
ACCESSION   DATCMF010000199 DATCMF010000000
VERSION     DATCMF010000199.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2172)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2172)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2172
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43507"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            38..556
                     /locus_tag="VIL14_02505"
     CDS             38..556
                     /locus_tag="VIL14_02505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription factor"
                     /protein_id="HEY8522608.1"
                     /translation="MPSIDNEESFAKISNLIGGEEYQKVANALLNTQDATDEEIAGAT
                     GMRINVIRKVLYDMFGKALITGIRVKDEKKGWFVYRWRAKSDQIDNFIDNQKKKILDR
                     LQKRLEYEESSEFYHCGNNECQRIKFDIAIESFFKCPTCNENLAMVDNNYTKEALRYK
                     IDQILSEISTEK"
     gene            complement(564..1232)
                     /locus_tag="VIL14_02510"
     CDS             complement(564..1232)
                     /locus_tag="VIL14_02510"
                     /EC_number="1.1.1.302"
                     /inference="COORDINATES: protein motif:HMM:TIGR00227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone
                     5'-phosphate reductase"
                     /protein_id="HEY8522609.1"
                     /translation="MKLPTDLKVIINSAMTLDGKISSYTGNSRISSKKDLVRVHKLRS
                     KVDAIVVGINTVLIDNPMLTVRFIRNNRSCPTRIIIDSYGRIPLDSKILKTAVTIKTI
                     IVVTKQASKDTIEKIKKLGAHVIIVGSKLINLKKLFNMLYKMGYRKILIEGGGELNWS
                     CLHNGIVNELIITIAPIILGGRNAITLVEGRGYSTISQGIKLKLTKIIQNKNDNEITL
                     YYNN"
     gene            complement(1216..>2172)
                     /locus_tag="VIL14_02515"
     CDS             complement(1216..>2172)
                     /locus_tag="VIL14_02515"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEY8522610.1"
                     /translation="ISMMIKGTISFVDFREGGPEGIELLKDSIGHLPIKSVILGRVEQ
                     YFDLKKILEIKKQTKQNINEKLDKLQKLSLESLSRVLELSDGLGLSGANENTDNALKQ
                     YTHKVKEFNKNNYVHHKKKIIAIHAAESKSTLKFSKLLTGKTEVERIINFLKPDILIH
                     MTHATLEDLTLALHNNIGIVLCPRSNGILGNGIPDIVTMVKLGFKISIGTDNIMINSP
                     DLLQELDYLWKVIKSHSSKYSNYIDPKELLKMITVNPGEIFGLNSGSIDIGKYADILF
                     IDKYHIDLQPIHNIYSSIIHRLSYDAIKGIMINGRFINETPY"
BASE COUNT          764 a          299 c          294 g          815 t
ORIGIN      
        1 aatatataat acctgactca caacatatac tattgttatg ccatctattg ataatgaaga
       61 atcctttgcc aaaatatcca atttaatagg tggagaagaa tatcagaagg ttgctaatgc
      121 acttttaaat acccaagatg caactgatga ggaaattgct ggtgcaacag gaatgagaat
      181 taatgttatt agaaaagtat tatatgatat gtttggaaaa gcgttaatta ctggaattag
      241 agttaaagat gagaaaaaag gttggtttgt ttatcgttgg cgtgcaaaaa gtgatcaaat
      301 tgacaatttc atagataatc agaaaaaaaa aattctagat agattacaaa aaagattaga
      361 atatgaagaa tcatcagaat tttatcattg tggaaataat gaatgtcaaa gaataaaatt
      421 tgatatagct atagagtctt tttttaaatg ccctacttgt aatgagaacc ttgctatggt
      481 agacaataac tatacaaaag aagcattgag atataaaatt gatcaaatac tatctgaaat
      541 atctacagaa aaataattaa tatttagtta ttataataaa gcgttatttc attatcattt
      601 ttattttgaa taattttagt aagctttaat tttatccctt gtgatatggt agaatatcct
      661 cttccttcaa caagagtaat agcatttctt ccacctagaa ttattggcgc aatagttata
      721 attaattcat ttacaatgcc attatgtaaa caagaccaat ttaattctcc tcctccttca
      781 ataaggattt ttctataacc cattttgtat agcatattga aaagtttttt taaatttatt
      841 aacttcgatc caactattat tacatgtgct cctaatttct ttattttttc tatagtatct
      901 ttacttgcct gttttgtaac aacaattata gttttaattg taacagccgt ttttagaatt
      961 ttagaatcta atggtattct accgtaacta tctataataa tacgagtcgg acaacttcta
     1021 ttatttctta taaatctaac agttaacata ggattgtcta taagaactgt atttataccc
     1081 actacaattg catcaacttt agaacgtaat ttatgaacgc gtactaaatc tttcttagaa
     1141 gagatacgtg agttgccagt ataagaagag attttaccat ctaaagtcat agcagaatta
     1201 ataattactt ttaaatcagt agggagtttc atttataaac ctaccattga tcatgatacc
     1261 ttttattgca tcataagaaa gtctatgaat aatagaagaa tagatattat gaattggttg
     1321 taaatctata tgatacttat caataaataa aatatcagca tattttccaa tatcgattga
     1381 tccagaattt aaaccaaata tttctcctgg gttaacagta atcattttta ataattcttt
     1441 tgggtcaatg taattagaat atttagagga atgtgattta attactttcc ataaataatc
     1501 tagttcttgt aaaagatcag gagaattaat cattatatta tcagtaccta tcgatatctt
     1561 aaatcctaat tttaccatag tcacaatatc aggaattcca tttccaagaa ttccgttaga
     1621 tcttggacat aatactatgc ctatgttatt atgtagggca agggtaagat cttccaaagt
     1681 agcatgtgtc atatggatga gtatatcggg tttaagaaaa ttaataatcc tctcgacttc
     1741 tgtttttcct gtaagtaatt ttgagaattt gagagtactt ttggattcag cggcatgaat
     1801 agcaattatt ttttttttat gatgtacata attattttta ttgaattctt taactttatg
     1861 tgtatattgt ttaagagcat tatccgtatt ttcattggcc ccacttagtc ctaatccatc
     1921 acttaattct aatactcttg aaagagattc taaagacaat ttttgtaatt tatctaattt
     1981 ctcattaata ttttgtttag tttgtttttt aatttccaat atttttttta aatcaaaata
     2041 ttgttctact ctacctaaaa ttactgattt tataggtaga tgccctatag aatcttttaa
     2101 taattcaatt ccttctggac cgccttcacg aaaatctaca aaagatattg taccttttat
     2161 catcatagaa at
//
LOCUS       DATCMF010000200         2484 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_172947, whole genome shotgun sequence.
ACCESSION   DATCMF010000200 DATCMF010000000
VERSION     DATCMF010000200.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2484)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2484)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2484
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_172947"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            216..1079
                     /locus_tag="VIL14_02520"
     CDS             216..1079
                     /locus_tag="VIL14_02520"
                     /inference="COORDINATES: protein motif:HMM:NF012936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase-related protein"
                     /protein_id="HEY8522611.1"
                     /translation="MNLFQKPNIKKIKYNTSQITSMHSELTREIISAINNCILTDKSF
                     GIAFSGGIDSSLLAKVSRDLYKDNVILLSVGFPFSPDLEFSRKIAHELNMKHFTYEIQ
                     NEEFSNITKKVIDNLECNNISHIENCIAFYFISFIAIQNNCKLVLTANGFDELFCGYD
                     KYRQIILQGHKLIKSFMAERIINELTLVNEINTITKEFHVKIEQPFLAQRFIDYAMKI
                     PIEKKIVGPCDKLRKHILREIAISLNVPNESALKPKKALQYGTLIHKNLSKIINSDKD
                     IKSKLLTKINH"
     gene            complement(1131..>2484)
                     /gene="purB"
                     /locus_tag="VIL14_02525"
     CDS             complement(1131..>2484)
                     /gene="purB"
                     /locus_tag="VIL14_02525"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004018 - N6-(1,2-dicarboxyethyl)AMP
                     AMP-lyase (fumarate-forming) activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HEY8522612.1"
                     /translation="LPIDSGRYGSKDIKEIFEEQKRLDFILEFEAATALAQSKIGIIP
                     VDAANEINVLAKSGKITLARTKELESTTDHDMAAVVNAISEQCSPNTKPWVHFGLTSN
                     DIIDTTTSMQLRASLLIIEPKIKELAVTLSKKAVEFKIQPAVGRTHGQHASIIPFGLK
                     FAVWAMEMVKHMERIKEGKKRFLICKTLGVVGTGSLMGDKALEVQQVVASLLDLHPIE
                     AATQIIPRERLAELQFLVALIGTSLDKIAIEIRNLQRTEIDEVAESFKSGQMGSSAVP
                     VKKNPIKSERVSSLAKLLRSLLNVSMENICLWHERDLSNSANERFTIPMGIILLDEML
                     KTMINVVRHILINTEKISSNINITQGQIYAEFILESLVRKGISRIEAYMNIQRVAFEA
                     KDNGKQFIQAIKDDSVLSKYFSDIELNKLFTAEQHLASGTKIIDMVSSIVHNELSTSK
                     "
BASE COUNT          841 a          402 c          342 g          899 t
ORIGIN      
        1 aagaaaactt agtaaattgg ataaagataa ttgagttcta tttgataaat aatcaccgtt
       61 attattaaga tacttaatat cactttcaac aagatttctt ttatttgaca atatgagaac
      121 tgtgcaaatc tatatataaa aatctaagcc ttttctagat aaaaatgagt atattttaat
      181 tatcaacaaa aaacgatatt atccttaaat gagttatgaa cttatttcaa aaacctaata
      241 ttaaaaagat aaaatataac acttcgcaaa tcacttcaat gcattcagag cttaccagag
      301 aaattattag tgccattaac aattgcattt taacagacaa aagttttggt attgcatttt
      361 caggagggat tgatagctca ctacttgcaa aagtttcaag agatctttat aaagataatg
      421 ttattttatt atcagttggt tttccttttt cacctgatct ggaattttct cgaaaaattg
      481 cccatgaatt aaatatgaaa cactttacat atgaaataca aaatgaggaa tttagtaata
      541 tcacaaaaaa ggttattgac aatcttgaat gtaataacat ttctcatata gaaaattgta
      601 tagcatttta ttttatatcc tttattgcta ttcagaataa ttgcaaactt gttttaacag
      661 ccaatggttt tgatgagtta ttttgcgggt atgataaata tagacaaata attttacagg
      721 gtcataaact aattaaaagt tttatggcag aaagaataat taatgaatta acgcttgtaa
      781 atgaaataaa tacgattaca aaagaattcc atgttaaaat tgaacaacct tttttagctc
      841 aaaggtttat agattatgca atgaaaattc ccatagagaa aaaaatagtt ggtccatgtg
      901 ataagcttag gaaacatatt ctaagagaaa ttgcaatttc tttaaatgtt ccaaatgaat
      961 ctgcattgaa gccaaaaaaa gctctccaat atgggacgtt gatccataaa aatttatcaa
     1021 aaattataaa ttctgataaa gacataaaat caaaattatt gactaaaatc aatcattaaa
     1081 tactcttctt ccaagtctaa tttttttcta caagttatac atattatatt ctatttggat
     1141 gtagataatt cattatgaac aattgaagaa accatatcaa ttattttcgt tccggaagct
     1201 aaatgttgtt ctgcagtaaa aagtttgttc aattctatat ctgagaaata ttttgaaaga
     1261 actgaatcgt cctttattgc ttgtatgaac tgtttgccat tatcctttgc ttcaaatgca
     1321 actctctgga tattcatata cgcctcaatt cttgaaatac cttttcgtac aagcgattcc
     1381 aaaatgaatt cagcataaat ttgtccttga gtaatgttta tgtttgatga tattttttcc
     1441 gtatttatta atatatgtct tacaacattt atcatagtct ttaacatttc atccaaaaga
     1501 attataccca ttggtatagt aaatcgttca tttgctgaat ttgataaatc gcgctcatgc
     1561 catagacaaa tattttccat tgaaacgttt agaagagatc tcaaaagttt tgctaaagaa
     1621 gacacccttt cactcttaat aggatttttt tttacaggaa ctgcactact tcccatttgc
     1681 ccacttttaa aagattcggc aacttcgtct atctctgttc gctgtaaatt tctgatttca
     1741 attgcaattt tatctaacga agtacctatc aaagcaacaa gaaattgtaa ttctgccaat
     1801 cgttctcttg gaattatttg tgttgctgcc tctataggat gtagatctaa caatgaagca
     1861 actacttgtt ggacctccaa tgctttatcc cccattaacg atccagtccc tacaactccc
     1921 aaagttttac atattaagaa acgctttttt ccttctttta ttctttccat gtgttttacc
     1981 atttccattg cccaaactgc aaattttaat ccaaaaggaa taatacttgc atgctgacca
     2041 tgagttcttc ctactgcagg ttgaattttg aattctacag cttttttcga taaagttact
     2101 gctaattctt taatttttgg ctcaataatt aatagtgagg ctctcaattg cattgaagta
     2161 gttgtatcta taatgtcatt acttgttaaa ccaaaatgga cccatggttt tgtattagga
     2221 gagcattgtt cacttatagc attaactact gcggccatat catgatcagt agtagattcc
     2281 agctcttttg ttctggctaa agtgattttt cctgatttgg ctagaacatt gatctcattg
     2341 gctgcgtcta ctggaattat gccaatttta gattgggcta aggccgttgc tgcctcaaat
     2401 tcaaggataa aatccagccg tttttgttct tcaaatattt ctttaatatc tttactccca
     2461 tatcttccag aatctattgg caga
//
LOCUS       DATCMF010000201         1560 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_44089, whole genome shotgun sequence.
ACCESSION   DATCMF010000201 DATCMF010000000
VERSION     DATCMF010000201.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1560)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1560)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1560
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44089"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..453
                     /locus_tag="VIL14_02530"
     CDS             <1..453
                     /locus_tag="VIL14_02530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522613.1"
                     /translation="IKNDEILAHKTILKLAEKITAKDVINILKQNLQEKESRYKKIRT
                     FESEMLNYREENNHPESFKLGSAVADMLTSYWNSQKSPSKVYVFNRRVHHGAIGALLG
                     LSSTLYKNNPIVTGILSGLGTGLQKDDYNDSKEWFLFKKKEDDAKENK"
     gene            575..1198
                     /locus_tag="VIL14_02535"
     CDS             575..1198
                     /locus_tag="VIL14_02535"
                     /inference="COORDINATES: protein motif:HMM:NF016382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease V"
                     /protein_id="HEY8522614.1"
                     /translation="MNDNYTAIIELQKEFAKKVITYDYSNNVNNVCGIDVSYKELNAF
                     CSAVIVNKNTLESIEIANEKSTVKYPYIPGLFMLKEAKPLLKILRLLKKSFDVLLVDG
                     HGVLHPRKCGLACYIGIIIDKPTIGVAKNLLCGSILENNYIEYNKKILGYRIRKNNKK
                     DIYVSIGHKISLETAVNIVINLTKINEFIPEPLRIADTNSKKYSNFK"
BASE COUNT          671 a          182 c          223 g          484 t
ORIGIN      
        1 ataaaaaatg acgagatact agcacataaa acaatattaa aattagctga aaaaataacg
       61 gctaaagatg taataaacat actaaaacaa aacctgcaag aaaaagaatc aaggtataag
      121 aaaataagaa cttttgaatc tgaaatgctt aattacagag aagaaaataa tcatccagaa
      181 tcattcaagc taggatctgc agttgctgat atgttgacat cttattggaa ttcacaaaaa
      241 agcccatcta aagtatatgt gtttaataga agagtacatc atggagcaat tggtgcttta
      301 ctcggattat cttctacttt atacaaaaac aatccaattg ttactggtat tttgtcaggg
      361 ttaggtacag gtcttcaaaa agatgattac aatgattcca aggaatggtt cttatttaag
      421 aaaaaagagg atgatgcaaa agaaaataaa taaataaata aataatgaat agaatcattt
      481 taaaattaga aataatagtt ctattatatc atatatagct ttttatgaaa ctgtagtaaa
      541 taatttagcg atcacactat attacaaaat aaaaatgaat gacaattata cagcaattat
      601 tgaactacag aaggaatttg ctaagaaggt tattacttat gattattcaa ataatgtgaa
      661 taatgtttgt ggtatagatg tgtcttataa ggagttgaat gctttttgtt ccgctgtaat
      721 agttaataaa aatacacttg aatcaattga aatagcgaat gaaaaaagta ctgtgaaata
      781 tccgtacata ccagggcttt ttatgttaaa agaagcaaaa cctttactaa aaatcttaag
      841 gttattgaaa aaatcatttg atgtactgtt agttgatggt catggagtct tacatccaag
      901 aaaatgtgga ttagcttgct atataggtat aataattgac aaaccaacaa taggcgttgc
      961 aaagaactta ttatgtggtt caatattaga aaataattac atagaataca ataaaaaaat
     1021 tctaggatat agaattagaa agaataataa aaaagacatc tatgtcagta taggacataa
     1081 aatcagtcta gaaactgcag ttaacatcgt aataaaccta actaaaataa atgaatttat
     1141 tccagaacct ttaagaatag cagacactaa ttctaaaaaa tatagtaatt ttaaatagaa
     1201 cgatacaaca ttaaatttaa acaattaatt aatttttatc atgaaactaa ctctattata
     1261 tcaattaaat agctactact tcataggaat aactacaacg ttgctaaaat acacaagtct
     1321 cggctctggt attggattag caattattca taatctacca ttagctcttg taatcaatag
     1381 acattatata actactaatt aaaagaatat tataaataca attgtgacaa actaactgtt
     1441 tataaaataa aattacaata atttagaact taattatata taggttaaag atacatgcta
     1501 agtgatttga atatgagtgg ataggtattt gatatctatt aaaaaataga atttagaaaa
//
LOCUS       DATCMF010000202         1968 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_174261, whole genome shotgun sequence.
ACCESSION   DATCMF010000202 DATCMF010000000
VERSION     DATCMF010000202.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1968)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1968)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1968
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_174261"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1036)
                     /locus_tag="VIL14_02540"
     CDS             complement(<1..1036)
                     /locus_tag="VIL14_02540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HEY8522615.1"
                     /translation="MAKDSEKGKLKSLTMIKNFGLYPKKLYSHLSVPELVESSIQRKE
                     AILSNTGSLSVETGKFTGRSPDDRYIVKDNMTTKTINWGKVNHPISEENFKSIFERMK
                     KFVKNKELFLFNGFVGSDEEVRLPISIITDRAWQSIFANQIFIKPTKVDIEKYKPKVL
                     LIALNDFKSIPQREGTNSETFIVINLKRRIILIGSTSYAGEIKKSIFSLMNYYLPEQN
                     IFPMHCSANVGNNKDSALFFGLSGTGKTTLSADSNRFLIGDDEHGWSSKGIFNFEGGC
                     YAKCINLKKETEPQIWNAIKFGSVMENVVNSKDTRVPDFSNGSLTENTRVVYPLEYIP
                     GAVIPSIADHP"
     gene            complement(1190..1951)
                     /locus_tag="VIL14_02545"
     CDS             complement(1190..1951)
                     /locus_tag="VIL14_02545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522616.1"
                     /translation="MKIDEFISHLPSEVISGHDITIADNVFRNLFKFSELSPQDVFYY
                     IGFGNNIKSLEIAREEFNVRKVIGIDDNEKFVNNAKNQIKNSQGIEILKKSIEVLNLS
                     EASIVFFWFNDITLIDKLKQKIEKEMKIGSRIVTILSPPGLIIPSRVDYPFIMCKKPF
                     NYASELKQQIKAIYGNSCIDFTASWLISEKYIHKLETPTQYARFINILLSMIIWINAW
                     NNGVACEKEIPPPIESYIGILRTFFNIDLTEMLKK"
BASE COUNT          627 a          320 c          273 g          748 t
ORIGIN      
        1 tgggatgatc tgctatactt ggaataacag cacctggaat atattccaga ggataaacca
       61 cacgggtatt ctctgtaagc gaaccattgg aaaagtcagg aactcgagta tcttttgaat
      121 taactacatt ttccattact gatccaaact ttattgcatt ccaaatttgt ggttctgttt
      181 cctttttcag gttaatacat ttagcatagc accctccctc aaaattaaaa atacctttag
      241 aagaccatcc atgttcatca tctcctatta aaaatctatt agaatcagct gaaagggttg
      301 tttttccagt gccagataac ccaaaaaata aagcagaatc tttattgttt ccaacgtttg
      361 cagaacagtg catagggaat atattttgtt ctggcaaata ataattcatt aaagaaaaaa
      421 ttgatttttt aatttctcct gcatatgacg tagaaccgat taagattatt cttctcttta
      481 aattgataac tataaaagtt tcagaattag ttccctctct ttgtggtatt gatttaaagt
      541 cgtttaatgc aattaaaaga acttttggtt tatatttttc aatatctact tttgttggtt
      601 ttataaatat ttgattggca aaaatagact gccatgccct atctgttatt atacttatag
      661 gaagcctaac ttcttcgtca gatcctacaa aaccattgaa taaaaaaagt tctttatttt
      721 ttacaaattt tttcattctc tcaaaaatac ttttgaaatt ctcttcagag ataggatggt
      781 ttacttttcc ccagttaatg gtttttgttg tcatattgtc ttttactata tatctatcat
      841 caggagatct tccagtaaat ttaccggttt caactgataa cgaaccagta ttagacaaaa
      901 ttgcttcttt tctttgaatt gaagattcta caagctcagg aacggataag tgggaatata
      961 atttttttgg atataaccca aagtttttaa tcattgttaa gcttttcaat tttcctttct
     1021 ctgaatcctt ggccattagg ctacctttac ggattattat tagcagtatt taattgattt
     1081 cctttaacaa agaacagttt tctagatcat cttgagacat tatattcgga aatctatctt
     1141 gcttcttaat tctgaagata taggctgcaa taaactgtac tcaataactc tattttttta
     1201 gcatttctgt gagatcaata ttaaaaaacg ttcttaatat gccaatataa ctttctatag
     1261 gaggaggtat ctccttttca caagcaactc cattattcca cgcatttatc cagattatca
     1321 tactcaaaag aatattgata aatctcgcat attgggttgg cgtttcaagt ttatgtatat
     1381 atttttcaga gatgagccac gatgcggtaa aatctataca tgaattgcca taaatagctt
     1441 ttatttgttg ttttaattct gaggcatagt tgaatggttt tttacacatt atgaaaggat
     1501 aatcaactcg ggaaggaata ataagaccag gaggagataa gatggtgact attcttgaac
     1561 ctattttcat ctctttttca attttttgtt ttagtttatc tattagcgtt atatcattaa
     1621 accagaaaaa cacaatacta gcttcagaaa ggttcaagac ttctatggat ttttttagaa
     1681 tttcaattcc ttggctattt ttgatttgat ttttcgcatt gttaacaaat ttctcgttat
     1741 catcaatacc tatcaccttt ctaacattga attcctctct tgcaatttct aatgacttaa
     1801 tattatttcc aaatccaata taataaaata catcctgtgg agataattca gaaaatttaa
     1861 aaagatttct aaaaacatta tcagctattg ttatatcatg accagaaatt acttctgaag
     1921 gtaaatgaga aatgaattca tctattttca agttttatat tttttctt
//
LOCUS       DATCMF010000203         1685 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_174399, whole genome shotgun sequence.
ACCESSION   DATCMF010000203 DATCMF010000000
VERSION     DATCMF010000203.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1685)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1685)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1685
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_174399"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(46..828)
                     /locus_tag="VIL14_02550"
     CDS             complement(46..828)
                     /locus_tag="VIL14_02550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522617.1"
                     /translation="MSQNKIPNHERYIFPFFAGTYFTYRKVDVIRLISIAKSISCTPT
                     YVDVGCGYGDFLEKIREYIPNAIGIEKEGNIFYAFKRPRPDYIYSTSIEWLENQTFDL
                     AFIGWMEPGVDFRKHVAKLAKCIVTTFDEGGQCGINGGCEYEEYGFKRIAWWRSPSWI
                     DVNTELMNRYYTPPSMLAKQTKDELARLRSAHNFWYIYTRPSISDEVVAGLRSCVANE
                     DKLSSKERFDFESVLDQCGFHYKENLLSASDQAKLLWEVIFD"
     gene            1450..>1685
                     /locus_tag="VIL14_02555"
     CDS             1450..>1685
                     /locus_tag="VIL14_02555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HEY8522618.1"
                     /translation="MPIAILPDVDEQRCIGCALCVEICTALGPDVLRVKPVEGWKRGK
                     AFVFYPERCISDGACIGVCPTHAIFWMRPMEYTAG"
BASE COUNT          507 a          332 c          329 g          517 t
ORIGIN      
        1 acaataacag caggagaggc cgcaaaatag gactattgaa cgagattaat cgaatattac
       61 ttcccacaac agtttagctt gatccgaagc tgatagcagg ttttccttat agtggaagcc
      121 acattggtct aagaccgatt cgaaatcaaa tcgttctttg gaagatagtt tgtcttcatt
      181 agctacacat gaccttagcc cagcaacaac ttcgtccgat atacttggcc gggtgtagat
      241 ataccaaaaa ttatgagcag aacgcaatcg ggccaactca tccttggttt gtttagctaa
      301 catggatggt ggcgtatagt atctgttcat cagttctgta tttacatcta tccaagaagg
      361 tgatctccac catgcaattc tcttaaaccc gtactcctcg tattcgcatc cgccatttat
      421 gccgcattgc cctccctcat caaacgtggt gactatgcat ttggcaagct tcgccacatg
      481 ttttctaaaa tctacgcccg gctccatcca acctatgaag gctagatcaa aggtctgatt
      541 ttccagccac tcaattgaag tcgaataaat ataatccggt ctaggtcttt taaatgcata
      601 gaagatattc ccttcctttt caatgcctat tgcatttgga atatattctc ttatcttctc
      661 aagaaaatca ccatagccgc atccaacatc gacgtaggta ggtgtacaag aaattgattt
      721 tgcaatgctg attaacctaa taacgtcaac tttccggtat gtaaaatatg tgccagcaaa
      781 aaatggaaat atatatcgtt catgattagg aatcttgttc tgcgacacaa atttcctgaa
      841 ttgcgagtag gcatcttgta agtcattaat catgaacggc aagttctata gtaccttttg
      901 ataaatcaac tctatgctta ttatgttagt caattggaaa aggtacctga tttagtatgt
      961 tgaattcaaa taaatgtacc ggctatgcgt gtcgcagtca ttttatctat gattgttata
     1021 agtttcaaga aatccaaaag gcttattaac ctttgccaag tagcttggta gcatggttag
     1081 gaaattcgaa gagtggtgga acactgttcc agctgactta aaacaaaaag ctcgcagagg
     1141 cgatgaatca aataagccgt tgctaaatca agttaactat gttcttcttc atctccactt
     1201 agccggcaag catgattcta aaccgagtca cgaggagctg aaagactggc tacatagtgg
     1261 tcaagtagat gtattaagaa tgaataagta aacttaaaac ctcaacgtat tttcctttat
     1321 ttcttgagta actttttaat ctggaacgtc atatcgtaag gcagtttttc atgcttctta
     1381 taacactgtt ttgtaattgg catagtgttt aaatagtttc agaagtatgc acctgtagtg
     1441 aattattaga tgccaattgc tatacttcca gacgttgatg aacaacgatg tataggttgt
     1501 gctctctgcg tagagatttg tactgctctt ggaccagatg tactaagagt aaagccagtg
     1561 gaaggttgga aaagaggtaa agcatttgtc ttttatccag aaagatgcat atctgatggt
     1621 gcctgcatag gcgtatgccc tacacatgca atcttttgga tgagaccaat ggaatacact
     1681 gcagg
//
LOCUS       DATCMF010000204         1742 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_174768, whole genome shotgun sequence.
ACCESSION   DATCMF010000204 DATCMF010000000
VERSION     DATCMF010000204.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1742)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1742)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1742
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_174768"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..372
                     /locus_tag="VIL14_02560"
     CDS             <1..372
                     /locus_tag="VIL14_02560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522619.1"
                     /translation="NFGIEDRKAAEAVKWMNSYALDNSKKFEAKLEGYLLTTKNFGNF
                     EIISWKGDWSFARNLIIKVSRKLSTKVIESGYHQKNSFFLSLIGANKEMAKVYKKGGI
                     IGTLILDKKSGKWIVKSEKLI"
     gene            complement(482..718)
                     /locus_tag="VIL14_02565"
     CDS             complement(482..718)
                     /locus_tag="VIL14_02565"
                     /inference="COORDINATES: protein motif:HMM:NF013224.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC ligand binding domain-containing
                     protein"
                     /protein_id="HEY8522620.1"
                     /translation="MAEAYVLITCEEGHEEKIINELTKINDILTTNRVRGPYNILVKI
                     KGETIDTVIKTITSEIKTIDKIQYTVTLKVKHNS"
     gene            complement(718..1077)
                     /locus_tag="VIL14_02570"
     CDS             complement(718..1077)
                     /locus_tag="VIL14_02570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522621.1"
                     /translation="MDYDNLCKAVMDIDTKIRFAGICDESGEIKYGGQREGVEDMLSS
                     EETRKSNLQALARWGLRNSLSSKIGRGKYAMAEYEKIKRITIPLDDDHLLLITTEVEA
                     DHGKIISNTLKLLSAND"
BASE COUNT          566 a          270 c          222 g          684 t
ORIGIN      
        1 aactttggca tagaggatcg aaaggcagca gaagcagtta agtggatgaa ttcctatgcc
       61 ttagataata gtaaaaaatt tgaagcaaaa ttagaaggtt atttattaac aacgaagaat
      121 ttcggtaatt ttgaaattat ctcatggaaa ggagattggt ccttcgctag aaacttgata
      181 attaaggtca gcaggaaatt atcaacaaaa gtaattgaat ctggatatca tcagaaaaat
      241 tcattttttc tctctttaat tggtgctaac aaagaaatgg caaaagtcta taaaaaagga
      301 ggtataattg gtactctcat tctagacaag aaatctggta aatggattgt taaatctgaa
      361 aaattaatat aaaactaaga ttcactttca agacacatac tatacgtagg ctttatttta
      421 ttttaacttg ctaacaacaa ttgatttaga taaaaataaa agctttttct gtcttgttat
      481 tctagctatt atgcttgact ttcaatgtta cagtatattg aattttgtca attgtcttga
      541 tttctgatgt aattgtcttt attactgtgt cgattgtctc tccttttatc ttgacaagta
      601 tattgtatgg acctctaacc ctatttgttg ttaatatgtc atttattttg gttaattcat
      661 ttattatttt ttcttcatga ccttcttcgc acgttattaa aacataggct tctgccatta
      721 atcatttgca cttaataact tcagtgtatt actaataatt ttaccatgat ctgcttctac
      781 ttctgtagta ataagcaata ggtgatcatc gtctaatgga atcgtaattc ttttaatttt
      841 ttcatattct gccatggcat atttccctct tcctattttg gaagataaag aatttctcaa
      901 tccccatctc gctaaagcct gtaaatttga tttccttgtt tcttcactac ttagcatatc
      961 ttcgactcct tctctttgac ctccatattt tatctctcca gattcatcac atattcctgc
     1021 aaatcttatt ttagtgtcaa tatccatcac agctttacag aggttatcat aatccatatc
     1081 actatattcg aaaatacaaa tattaatagt ttatagaact ttacaatcta tttttaaaaa
     1141 atttaaagta attgaattta tacatttttt attaattttt atagataatc aggaatttta
     1201 gctaattctt ctatcttcca atggcaactc caacagaagt tgcatattaa acatgtgagt
     1261 tgtgttctaa tcttacaaga ctcacactct ttatatcgag gtaaaagact atctctaaga
     1321 tattcatgat taaaaaatct tctttcttcc tttcttgtta ttttggaaga tttcataatt
     1381 ttagtctatt taaaatatat atatttacta aattatatct tttatgaaat attttttaat
     1441 taatttgttt ttgttattta ttttttaaaa atattctatt gattattaaa actattaaaa
     1501 ttttagccat catttttctt tttgaaaatt tatttaaaat attgaatacg atgagctaaa
     1561 tcaaacctga tatagctcac cgttacccat cgatttttca gctttggtat agccttcctg
     1621 cacaagtcag ctaataccat acatcacatc attcaacagc gttgttaccg tcgaatttag
     1681 tgtagacagt gtctaaatct ataacgagaa ttcaatataa gagagttatt gagagaagct
     1741 at
//
LOCUS       DATCMF010000205         2567 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_175104, whole genome shotgun sequence.
ACCESSION   DATCMF010000205 DATCMF010000000
VERSION     DATCMF010000205.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2567)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2567)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2567
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_175104"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1141
                     /locus_tag="VIL14_02575"
     CDS             <1..1141
                     /locus_tag="VIL14_02575"
                     /inference="COORDINATES: protein motif:HMM:NF012402.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="Rieske 2Fe-2S domain-containing protein"
                     /protein_id="HEY8522622.1"
                     /translation="TLNFIIKMIILSEEDFVKVSDTKDIQPSPMKEVQVDGENICIVN
                     VEGKYYAIGSICTHEGGPLADGTLEGYEVECPWHGSKFDVRTGEVKSPPASEPEPSYQ
                     VKVDGTNILIKKQGKSKSPQIELTLMEKDKVNGTDVMSFKFSKHNDDQIDNKTLNYNA
                     GQFAFFDIGQVYNDPKGPIRHFTISSSPTENFIMFSTRIRDSPYKKRLLTLEKGAKVK
                     FRGPEGQFVLHQDYSKYTVFLSGGIGVTPFRSMIKYATDMQLPVPIIMFDSNRDRNNI
                     LFKKEFDDWASINKNLKIIYTISEEKEEQHNEQSPLSTANEWKGEYGRIDKAMILKYV
                     DTNVLNNSIFYICGPPSMLKSMQALLQEDLEIPKERIKVEEFTGY"
     gene            complement(1473..2387)
                     /locus_tag="VIL14_02580"
     CDS             complement(1473..2387)
                     /locus_tag="VIL14_02580"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEY8522623.1"
                     /translation="MINTKLKIDHVHIKVSDLENSIQFYRSILGFKLVKQESKTVFLS
                     SSNTNSSLFLIALTELKDVLKPQRKQRVAGLYHFAILLPERRYLAYFLKHIQKNLSPE
                     YYEGMADHAVSESIYIHDPDFNGIEIYTDRPPSEWKWKDDTVHMVTEPLNVQDLMKES
                     ILAVENEWNDLPPNTSIGHIHLHVSNLAKAKKFYDEILGLNHTATFPGAYFFAANRYH
                     HHIATNIWLGENISHAINDNNRVGLDHYAINLQSQNDLLLLKNRLLEFKIDIDEHIVE
                     IENKKSPSFYTYDFDSIKIQFLYNNHKK"
BASE COUNT          934 a          367 c          409 g          857 t
ORIGIN      
        1 gactttgaac tttataataa aaatgatcat attgagcgag gaggattttg ttaaggtttc
       61 cgatacaaag gatattcaac cgtcacctat gaaagaagtt caagttgatg gagaaaatat
      121 ctgtatagtc aatgttgagg gaaaatacta tgctattggc agtatttgta cgcatgaagg
      181 tggtcctctt gccgatggta ctcttgaagg ctatgaggtt gaatgtccat ggcatggttc
      241 caaatttgat gtaagaacag gtgaggttaa gagccctcct gcaagcgaac ctgaaccaag
      301 ctatcaggta aaagtagatg gaactaacat attaattaag aaacaaggta aaagtaaatc
      361 tccccagatt gagctaaccc taatggaaaa agataaagtt aatggtactg atgtaatgtc
      421 atttaagttt agtaagcata atgatgatca aatagataac aaaacactca attataatgc
      481 aggtcaattt gccttttttg atataggtca agtttataat gatcccaaag gtccaatccg
      541 acattttact atttcatctt ctccaacgga gaattttata atgttcagca ctagaatcag
      601 agattctcca tacaaaaaga gacttttaac tttagagaaa ggtgccaaag tcaagttcag
      661 aggtccggaa ggacaatttg tattacatca ggattattca aagtatactg tatttctttc
      721 tggagggata ggtgttactc catttagaag tatgataaag tatgctacag atatgcaatt
      781 gccagtacca ataataatgt ttgattctaa tagagatcgt aacaacatcc ttttcaaaaa
      841 agaatttgat gattgggcaa gcataaataa aaatttgaag attatctata ccattagtga
      901 agaaaaagaa gagcaacaca acgaacaatc accattatca actgcaaatg agtggaaagg
      961 agaatatgga agaatagaca aagcaatgat attaaagtac gtagacacta acgtactaaa
     1021 taattcaata ttctatatct gtggtcctcc tagcatgcta aaatctatgc aagctttgct
     1081 ccaagaggat ttagaaattc caaaagaaag aatcaaagtt gaagagttta ccggttactg
     1141 atgttgatga ataaatgttt aacaaatcaa taggaaaact tgtcattatt ttatttagat
     1201 ctttatatcc agatccttct tcgtttaact tttgaccaga cactacatat tctgttttgt
     1261 tatctcatcc atccatataa attttatttg taaatattaa accatccata ttaatacaat
     1321 tggacaaaaa ttagttatat cacaaaagtg tcagctagtg ttttatatat aacgttataa
     1381 atttcagatt attatataat taatcagatc acaatttcca caataatagt aattttggtt
     1441 gaaacttgta actaattgat ttatttaatt cactattttt tgtgattgtt atacaaaaac
     1501 tgtattttta tgctatcaaa atcataagtg tagaacgatg gagatttttt attctcaatt
     1561 tcaacgatat gttcatcaat atctatttta aattctaaaa gacgattctt tagcaaaagt
     1621 aaatcattct gactttgtaa atttatggca taatgatcaa gtcctactct attattatcg
     1681 ttaattgcat gagaaatatt ttctccaagc catatattag tagcaatatg atgatgatac
     1741 ctatttgcag caaagaaata tgctccagga aaagtagcag tatgattcag acctaaaatc
     1801 tcatcataga atttttttgc tttagcaaga ttagacacat gcaaatgaat atgacctata
     1861 gaagtgtttg gaggaagatc attccattca ttctcaacag caagaatgga ttctttcatt
     1921 agatcttgta catttaatgg ttccgtaacc atatgtactg tatcatcttt ccatttccat
     1981 tctgaaggtg gtctatctgt gtaaatttct attccattaa aatcaggatc atgtatgtat
     2041 attgattctg atactgcatg atctgccata ccctcataat actcaggact aagattcttt
     2101 tgtatatgtt taagaaaata tgctaaatac cttctttctg ggagtaaaat tgcaaaatga
     2161 tatagcccag ctactctctg ttttctttga ggtttaagaa catcttttaa ttctgtaagt
     2221 gcaatcaaaa acaatgatga gtttgtattg gatgatgaaa gaaatactgt tttagattct
     2281 tgttttacta acttaaatcc aagaatggat ctataaaatt gaatagaatt ttctaaatct
     2341 gaaactttaa tatgtacatg gtctattttt aatttagtat taatcactat tagaataata
     2401 gaatagtttt ggaatattta agttaaaatc atgaacaaag gtaataaaat ttgaaataca
     2461 aattcaaagt agaggataga taataataat aataataata atttattcaa acagtaaaat
     2521 aactgatccc atagtgacaa tagttcgaaa attggagtca ctctaaa
//
LOCUS       DATCMF010000206         1575 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_175358, whole genome shotgun sequence.
ACCESSION   DATCMF010000206 DATCMF010000000
VERSION     DATCMF010000206.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1575)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1575)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1575
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_175358"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            296..>1575
                     /locus_tag="VIL14_02585"
     CDS             296..>1575
                     /locus_tag="VIL14_02585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522624.1"
                     /translation="MTSDITSNIHSSHLDVQRIDIVYGIQNIGNSYSQLFLNAKIKID
                     NCINCYNLLSYFEFESIKKSIIEAKSRGVISRYITDITKDNIKHCKELAKIVDELRHL
                     DGIKSNFVLSESEYIAIPVLEKSQPATQIIYSNINPVVQQMQCVFNTLWYKAIPAEQK
                     IKEIEEGKLLYETKILENQQDIINKIIHLAETSSQLLIVSSYGGMQLIYNNFLTSYKK
                     ILDNNKRESKGIKWICNIEKQNLEIVKIFLNMGMQIRHVNNLPPMSFALGDREINATI
                     EKMEHGKMVQSLLTSNEPLYIKHFLSIFEDLWNSGIDATNRIIELEEGIELESIKIIR
                     NPVEVQNLAFDLLKSAKDEILIIFSTANAFHRQEKAGSIELLTEIASKKGNDVNIKIM
                     TPIDAKLKYVKRELENVEVNEKVEHKKEKNREIS"
BASE COUNT          661 a          176 c          229 g          509 t
ORIGIN      
        1 agtttttagt ttatttaatc tgttctcaat tagaaatcat caacaacggc aatgtacaag
       61 atgctttttt tattattaag agtaatagaa ttattttaaa tattataatg tacttggtga
      121 ttgttaaatg attttttgaa taaaaatgga atgcagacct atcttgtttg tattttgtat
      181 attacattta aatagagaaa ttttttgtaa actttagaaa aataataaat aaaatattaa
      241 taattacttt ttaccatact actttatatt tataaattaa tataactata tatctttgac
      301 atcagatata acctcaaata tacattcatc ccatttagat gttcaacgaa tagatatagt
      361 atatggaatt caaaatatag gtaattcata ttcacaatta tttctcaatg caaagataaa
      421 gatagataat tgtataaact gttataattt actctcatat tttgagtttg aatcgataaa
      481 aaaatcaatt attgaagcaa agagtagagg agtcatatca aggtacatta cagatattac
      541 taaagataat atcaaacatt gcaaagaact cgctaaaata gttgatgagc ttagacattt
      601 agatggaata aaaagcaatt ttgttttaag tgaatccgaa tatattgcca ttccagttct
      661 agagaaatcg caaccggcaa cacaaatcat ctatagtaat ataaatcccg ttgtacaaca
      721 aatgcaatgt gtttttaata cactgtggta taaggcaatt cctgcagaac agaagataaa
      781 agagatagaa gaaggtaagt tactttacga aaccaaaata ttagaaaatc aacaagacat
      841 tataaataaa attattcatt tagctgaaac atcatctcaa ttgttaattg tttcatcata
      901 tggagggatg cagttaatat ataataattt tttaacttca tataaaaaaa tacttgataa
      961 caataaaaga gaaagtaaag gaataaaatg gatctgtaat atagaaaaac aaaatctgga
     1021 gatagttaag atatttctaa atatgggaat gcaaattcgt catgttaata atttaccacc
     1081 tatgagtttt gctttaggtg atagagagat taatgcgact atagaaaaga tggaacatgg
     1141 caagatggtt caaagtcttt taacaagtaa tgaacctctg tatattaagc attttctttc
     1201 aatctttgaa gatctatgga atagcggaat agatgcgaca aatagaataa tagaattaga
     1261 agaaggtatt gaattagaaa gtataaaaat tataagaaat cctgttgaag ttcagaatct
     1321 tgcctttgac cttttaaaat cagctaaaga tgaaatatta ataatatttt ctactgctaa
     1381 tgcatttcat cgtcaagaaa aagcaggctc tatagaacta ttaactgaaa tcgcatctaa
     1441 gaaaggtaat gatgtaaata tcaaaattat gacaccaatt gatgctaaat taaaatatgt
     1501 aaaaagagaa cttgaaaatg tagaagtaaa tgaaaaagta gaacataaaa aagaaaaaaa
     1561 tagagaaata tcaag
//
LOCUS       DATCMF010000207         2319 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_490880, whole genome shotgun sequence.
ACCESSION   DATCMF010000207 DATCMF010000000
VERSION     DATCMF010000207.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2319)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2319)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2319
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_490880"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..778
                     /locus_tag="VIL14_02590"
     CDS             <1..778
                     /locus_tag="VIL14_02590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522625.1"
                     /translation="ISVDDVVTYLITSIELEDTANKDFDVGGPEILTYVDMMKRYSAI
                     LNKSLKIVIIPFLTPRLSSYWVDLITPVKASLARPLIDSLKHEAVVHDNEIQKLIPIK
                     LMNFEESIKTAMKEQVRKTKIIKKQKTSDSLNRKILIFSLISLGIIGATYYFLDNKNY
                     LFTPLWIILAIVWYFGILFALFFVKDGARLGSLVAGIIGWITLIFWGFNNLYLIYDNS
                     INLYYPNVLVAIRNFIGAIVAGLVIAASHNLFHKLRVLGK"
     gene            complement(823..1200)
                     /locus_tag="VIL14_02595"
     CDS             complement(823..1200)
                     /locus_tag="VIL14_02595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522626.1"
                     /translation="MPHIVLTNVSDFESVFNNFKKDVLIIKNEKNLTNTIIRFEEIFL
                     NQLKNIILIKTIVIENTNQSQAYYIMAMKKNNQITIRLDPLTDPKNKTDAVKTSLTYI
                     AKQYKKIDPAISIGKTNLEQYLL"
     gene            1674..>2319
                     /locus_tag="VIL14_02600"
     CDS             1674..>2319
                     /locus_tag="VIL14_02600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522627.1"
                     /translation="MVDVESIKEARIKAKNRGVKFRYVTEVTPKNLSYCKEMIKYFGA
                     EIRHLDDVKGNFEISDDGKEYVATANLQEAKPLKQLIYSNVKEIGEQQQYIFDTLWNK
                     TISFDEKIKEIEEGIIPEVTEVIRNSAKAQELEWNLLKMATKEIQIIYSTVKAYKMQK
                     SEGVIDYLAKLAAKNDDIKIKLLTPKDSSIEESLQSLKDSNNNIDINYIEPKSGI"
BASE COUNT          877 a          287 c          366 g          789 t
ORIGIN      
        1 tatatctgta gacgatgtgg taacttattt aataacatca atagaacttg aggatacagc
       61 taataaggat tttgatgtag gaggcccaga aattcttacg tatgtagata tgatgaaaag
      121 atattcagct attctaaaca aatcattgaa aattgttatt attccatttt taacacctcg
      181 actctcttct tattgggtag atttgattac acctgtaaag gcatctcttg ctagaccttt
      241 aattgatagt ttaaagcatg aagcagtagt tcatgataat gaaatccaaa agttaattcc
      301 aattaaacta atgaactttg aagaatctat caaaactgct atgaaggaac aagtaagaaa
      361 aaccaagata ataaaaaagc aaaaaacgtc tgattctctt aatagaaaaa tattaatttt
      421 ttcattgatt tctttaggta taattggagc aacatattat tttttagata ataaaaatta
      481 tttattcact cctctttgga taatattagc cattgtatgg tattttggaa ttctatttgc
      541 attatttttt gtcaaagatg gtgcacgatt aggttcccta gtagccggta ttataggatg
      601 gataacacta attttctggg ggttcaataa tctatattta atatatgata attcgattaa
      661 tctatactat ccaaatgttt tagttgctat acgtaatttt attggagcga ttgtagctgg
      721 gctggttata gctgcatcac ataacctatt tcataaacta agagtactag gaaaataaaa
      781 tacaagactt caatactttg atcctatctt cattttttat atttacagta gatattgttc
      841 taaattcgtc ttacctatgg agatagctgg atcaattttt ttatattgtt tggcaatata
      901 tgtcaatgag gtttttaccg catcagtttt attttttgga tcagttaagg gatcaagtct
      961 tatagttatt tggttgttct ttttcattgc cataatataa tatgcttgag attgattagt
     1021 attttctatg actatagttt taattaatat aatattcttc aattgattta aaaagatctc
     1081 ctcaaatctg attatggtat ttgttagatt tttctcattc ttaataatca atacgtcctt
     1141 tttgaaatta ttaaaaacac tctcgaaatc tgaaacatta gttaagacta tgtgaggcaa
     1201 ttttcctaaa cctttttaaa gatgaagaca ttttaggtaa cataataatg cactgttagc
     1261 agctgcatct gttctcaatc catagattat agttgagtcc tctgataaaa tttctttaat
     1321 atcatctatc atattttata ctgatactta cgtttaagta ttatattgat atatatctat
     1381 agagcaagaa ggagacaatg gaatgtatac tatgataata gtaggaaagt gtaagaataa
     1441 ttattcccac tgaagaaggt aataatcata actataaaca agaaaaaaat gatataacta
     1501 ctaataagaa tagtaaacaa cctttttaca aaggagaagg aaacaataaa ataaatacgg
     1561 aaaagactga aatcttccat ggtagtgaag attcaaataa tgcaatttta aattttatct
     1621 acaaaacaaa gtatagaatt gatgcttgtc ttgattcaaa tggaccatca gtaatggttg
     1681 atgttgagtc aatcaaagaa gcaaggatta aagcaaaaaa tagaggagta aaatttagat
     1741 atgttactga ggtcacacca aaaaatcttt cttattgtaa ggaaatgata aagtattttg
     1801 gagctgaaat acgacattta gatgatgtta aaggtaattt cgagattagt gatgatggga
     1861 aagaatatgt agctactgct aatttacaag aagcaaaacc cttaaagcaa cttatttata
     1921 gcaatgtaaa agaaattgga gaacaacaac agtatatttt tgatactctt tggaacaaga
     1981 caatctcttt tgatgaaaag ataaaggaaa ttgaagaagg aattatacca gaagttacag
     2041 aggtaattcg aaattcagct aaagcccaag aattagagtg gaatctacta aagatggcaa
     2101 ctaaagaaat acagataata tattctacag ttaaggcata taaaatgcaa aaaagtgaag
     2161 gggtaataga ttatttagct aaactagcag caaaaaatga tgatataaag attaaattac
     2221 ttactcccaa agattcgtca atagaagaat cattacaaag tttgaaagat agtaataata
     2281 acattgatat taattatatt gaacctaaat ctggaatta
//
LOCUS       DATCMF010000208         2205 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_359003, whole genome shotgun sequence.
ACCESSION   DATCMF010000208 DATCMF010000000
VERSION     DATCMF010000208.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2205)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2205)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2205
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_359003"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(170..1252)
                     /locus_tag="VIL14_02605"
     CDS             complement(170..1252)
                     /locus_tag="VIL14_02605"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HEY8522628.1"
                     /translation="MKTKFGFTQGLNVARLGLDEYQVITACQMADRLDFDSIWAMDHT
                     NVPQWKNAVVNDAWLLLAAIGALTTKVELGTCVTDAIRRHPSTIALSTITLDRLTNGR
                     GMLGIGAGEAQNVVDFGIEFSKPVTKLKEQLEVIEKLFQSDPDNRVDFSGQYYKLENA
                     CLQAKSIRKPRPPVYIAAGAPKTLELCARYGDGWIPIGYTPELFRVHANVIKEHAKNF
                     GRDLSHFQFANDVDVYFTDDGEEAWNKMRNAVKVSLYKPELLKAHNLAQDSEFDFRKY
                     FTEYAMNKPELMEQMKKAALKIPDAVARSAIGVGKADEVIEMLERFIKAGTNHFIIRF
                     WGDGYFKNIELFGKKVIPYFREQEQK"
     gene            1437..1844
                     /locus_tag="VIL14_02610"
     CDS             1437..1844
                     /locus_tag="VIL14_02610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEY8522629.1"
                     /translation="MLLPSEIEAKSLIPAIRAILAKKLTIEYKMKEEFVAKVLGVTQA
                     AISNYIRGTRGDIELINKLSSLFEVMRKIDDIAQDLVANRVYTPSTMAKFVELCNYMR
                     YSFIICDVHHKIEANIDEQVCELCKDNLIGSKF"
     gene            complement(1873..>2205)
                     /locus_tag="VIL14_02615"
     CDS             complement(1873..>2205)
                     /locus_tag="VIL14_02615"
                     /inference="COORDINATES: protein motif:HMM:NF013811.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522630.1"
                     /translation="YVHIKGPDEFGHDGDALGKKQNIEKIDSEFFGTLLRELRITNVV
                     IVVSGDHSTPCIKKSHTDDPVPLLISSKTLKNTRVQRFTESYAKTGALGSIMGSDVLD
                     KTLEIIPL"
BASE COUNT          713 a          399 c          337 g          756 t
ORIGIN      
        1 atatgggata taatgctatt cctctttcta atgaaccaaa taagattaaa aagatagata
       61 aaaaaaaacc tattcctaga agaaaaaatg acattcaaat attagactat tttatgaaat
      121 agaatcctct tttttatata aaataatctt gagaaaaata agaatggaat tatttttgtt
      181 cttgttctcg gaaataggga ataaccttct ttccaaataa ttctatattt ttaaaatatc
      241 catctcccca gaatcttatt ataaaatgat tagttccagc ttttataaag cgctccagca
      301 tttctataac ttcatctgcc tttccaacgc ctatagcaga tcgagcaacg gcatctggaa
      361 tttttaatgc tgcttttttc atctgttcca tgagttcggg tttattcatt gcatattctg
      421 taaaatattt tctaaaatcg aattcagaat cctgagcaag attatgagct tttaatagtt
      481 cgggtttata aagacttact ttaactgcgt ttctcatctt gttccatgcc tcttcgccat
      541 catcagtaaa atagacatct acatcatttg caaattggaa atgtgaaaga tctctaccaa
      601 aattcttggc atgttcttta attacattag catgtaccct gaataattca ggagtgtatc
      661 ctatcgggat ccaaccatca ccatatctag cacataattc caacgttttt ggagcaccag
      721 cagcaatata gacaggagga cggggttttc ttatactttt ggcctgtaaa catgcattct
      781 ctaatttata atattgtcca ctaaaatcaa ctctattatc tggatcagat tgaaaaagtt
      841 tttctattac ttcaagctgt tcctttaatt tcgtaactgg tttactaaac tctattccaa
      901 aatctactac attttgtgct tcacctgcac cgattcccaa catacccctt ccattcgtta
      961 atctatccaa tgtaatggta gaaagagcaa tggttgatgg gtgacgtctt atggcatcgg
     1021 taacacatgt acctaattct actttggttg tgagagctcc aattgcggca aggagtaacc
     1081 aagcatcatt cactacagca tttttccatt gcggaacatt ggtgtgatcc attgcccaaa
     1141 tggagtcaaa atcgagccta tctgccattt ggcatgcagt aattacttga tattcatcca
     1201 aacctaatct tgcaacattc agaccctgtg taaacccaaa ttttgttttc attaacactt
     1261 taacctccac tttggagtac ttaagtgaaa tgatgtggac aggttattta taaccatata
     1321 atgtaaaaaa aataaaagtt atatttatgc attttctgca aataaaacaa aaaaatcctc
     1381 ttttgcctat aagacctcaa gaaaacttat ataatttttc gttctagtag aattagatgt
     1441 tactcccttc agaaatagaa gctaaatcat taattcctgc tattagagct atcttggcaa
     1501 aaaaattaac aattgaatac aaaatgaagg aagaatttgt tgctaaagtt ctaggcgtta
     1561 ctcaagccgc tattagcaat tatattagag gaactagagg ggatatcgaa ctcatcaata
     1621 agctttcatc acttttcgag gtaatgcgaa aaatcgacga tattgctcaa gatcttgtag
     1681 caaacagagt atatactcca agtactatgg ccaaattcgt tgaattatgc aactatatga
     1741 ggtattcatt tattatttgt gatgtccatc ataaaattga ggccaatatt gatgaacaag
     1801 tttgtgaatt atgtaaagat aaccttattg gttctaagtt ttagaaatta aaattgagta
     1861 tttaaattta ttttacaagg ggataatttc tagtgtttta tctagcacat cggatcccat
     1921 tatactgcca agagctcccg tcttggcata ggactctgtg aatctttgaa ctcttgtatt
     1981 ctttagggtt tttgatgata taagtagggg aactggatca tcggtatgac ttttttttat
     2041 acagggcgta gaatgatctc cggaaacaac tatgacgaca tttgtaattc ttaattctct
     2101 taacagagtt ccaaaaaact cactatctat tttttcaata ttttgttttt ttcccaaggc
     2161 atcaccgtca tgcccaaatt catctggacc tttaatatga acata
//
LOCUS       DATCMF010000209         2122 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_491082, whole genome shotgun sequence.
ACCESSION   DATCMF010000209 DATCMF010000000
VERSION     DATCMF010000209.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2122)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2122)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2122
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_491082"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(121..702)
                     /locus_tag="VIL14_02620"
     CDS             complement(121..702)
                     /locus_tag="VIL14_02620"
                     /inference="COORDINATES: protein motif:HMM:NF014447.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522631.1"
                     /translation="MYISKEFLDDIPKDKKLVLELGIGDGNLIKLLSEKNHDYFFIGI
                     EKNESHFNKAKYNIKSQNVKIIHTLFESVLPLFEDNSIYKVISVLPDPKYIDKNYKSN
                     WEILYKVIYKKLVRQGKFILITEITDELFQPVSNNEFYKEVEYLKQIFQSIGFIVLNV
                     FEGYQENYMTSFLQEFSGDPKRIRIINFEFTKN"
     gene            complement(969..1727)
                     /locus_tag="VIL14_02625"
     CDS             complement(969..1727)
                     /locus_tag="VIL14_02625"
                     /inference="COORDINATES: protein motif:HMM:NF019095.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHRD domain-containing protein"
                     /protein_id="HEY8522632.1"
                     /translation="MNSKTIVFTFLVVFPIFSGSIYITDQNIDALEEINTPIFKNLHF
                     VVDENSFVSDRYDTINKDNNYNPIEYTNEPAILNINNNQQPSFGYSEYDTNYLNDYAY
                     NNHYDYRSEFVAHLDPYPVISDYGYYYLDSHGIVYLSFDYSFSVLSYKVFVEGMSYLD
                     GDDVEIIEIHLGTYGQNGPSILSLCNEKIKEGHCREGPGLSVEGVIDEKDLMGPLKGS
                     SFRELIEFFKSGQSYVYVQSRDHPDGEMRGQIHY"
BASE COUNT          794 a          290 c          239 g          799 t
ORIGIN      
        1 atcatcaaca aggtacacta tctaaaataa tatgaaagaa aaaaataaat atgaaagaaa
       61 aaaattctta caaaggaaga agttgttgta tgaaaccaga tctactaatc aaattttaag
      121 ttagttttta gtaaattcaa aattaattat tctaattctt ttaggatctc cactaaattc
      181 ttgaagaaaa gaggtcatat aattttcttg atacccttca aaaacattta atacaataaa
      241 ccctattgac tgaaaaattt gttttaaata ctctacttct ttataaaatt cattatttga
      301 tactggttga aataactcat cagttatttc tgttattaaa atgaatttcc cttgtctcac
      361 taatttttta taaataactt tgtataagat ttcccagtta ctcttataat tcttatctat
      421 atatttcgga tcaggtaaaa ctgatataac tttataaatt gaattatctt caaataaagg
      481 taaaactgat tcaaataagg tatgaattat cttaacattt tgtgatttaa tgttatattt
      541 agctttatta aaatgacttt catttttttc tatgccaata aaaaaataat catgattctt
      601 ttctgagagt aattttatta aattaccatc accaattccc agctccagaa ctaatttttt
      661 atcttttgga atatcatcaa ggaattcttt agagatgtac ataaataaat aaataatgaa
      721 ttcatattta gattatttgt atctttcatt ttggtcatgt agaattcatt cattcaaaca
      781 aagaaagatt tttaatttat tctgttttat tttatagaga tgtatagcca gtttattacc
      841 tcattcactt aaattttttt aaataataca tcttgaaata tatatattac aaataacatc
      901 gattagtatt tgtatatcta atacaaatta gttattgcaa ctgttacctc ccaatataaa
      961 attgaacttt aataatgtat ttgtcctctc atttcaccgt ccggatgatc acgactttga
     1021 acgtatacat aagactgacc agatttaaag aattcaatca gttcgcgaaa tgacgatcct
     1081 tttaatggac ccatcaaatc tttttcatct attacacctt caactgataa tcctggtcct
     1141 tctctacaat gaccttcttt tattttttca ttgcataatg ataaaatact tggtccattt
     1201 tgaccgtatg ttcctaaatg tatctcaatt atttccacat catcgccatc tagataactc
     1261 attccttcca caaatacctt ataagataat acactaaatg aatagtcaaa tgagagatac
     1321 actataccgt gtgaatccaa gtaatagtat ccataatcag atatcaccgg gtaggggtct
     1381 aaatgcgcga caaattcact tctataatca tagtgattgt tatatgcata atcatttaaa
     1441 taattagtgt catattctga ataaccaaat gagggctgtt gattattatt aatattaagt
     1501 atagcaggtt cattagtata ttcaatagga ttgtaattat tgtctttgtt aatagtatca
     1561 tacctatctg agacaaaaga attttcatcc actacaaaat gcaagttctt gaagatgggc
     1621 gtatttattt cttctaatgc atcaatattt tgatcagtaa tgtatattga cccagagaaa
     1681 ataggaaata cgacaaggaa agtaaaaact attgttttag aattcaatac ttactaatta
     1741 aattctggat atttcaagaa tgtgaaagat catatagtat atgctatagt aggatttgca
     1801 tacctaataa tgtaatatat taaaataaat aattaaattt aattaaaaga aaaggatttt
     1861 tgtaaatgaa aaatattata tatacttata ataagaattc tttttttaac ttaattatag
     1921 taaatatttt ctttagaata gactcacatt acgtatgtat atatttatat caatgagtag
     1981 taatttagtg ttcaatctaa tggctttatt agtaaatatc atataatcct aataacacaa
     2041 aaataaacag tagattttaa taaataagtt acagtgatat agatatcata atatgtatat
     2101 cctttagaaa actaattatt ca
//
LOCUS       DATCMF010000210         2226 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_424713, whole genome shotgun sequence.
ACCESSION   DATCMF010000210 DATCMF010000000
VERSION     DATCMF010000210.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2226)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2226)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2226
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_424713"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..272)
                     /locus_tag="VIL14_02630"
     CDS             complement(<1..272)
                     /locus_tag="VIL14_02630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522633.1"
                     /translation="MKWLIILFVITLVFLVIFKFLYFGESIPILNLSNNLGDNSHTSF
                     YLNGSIFSLIFIGDEIHVKDNNNFANFLNLGKEKEEDINFVDFLTN"
     gene            complement(350..709)
                     /locus_tag="VIL14_02635"
     CDS             complement(350..709)
                     /locus_tag="VIL14_02635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522634.1"
                     /translation="MISEDSEYNKICNAICSVIADLKEEGIDINTKFDKESGFIGIYT
                     SNTSILKKAKNGLNEILELSYSTAEHHPYWNIIYNTSEIAKTTLDTWNEDFSLEQIQE
                     MVWRNDEIKNTLNRLEK"
     gene            1024..1167
                     /locus_tag="VIL14_02640"
     CDS             1024..1167
                     /locus_tag="VIL14_02640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522635.1"
                     /translation="MKKPIGDNEPSCDYCGNPIEICMCVCPYCGETNSCECCLYDAVT
                     GGG"
     gene            1216..>2226
                     /locus_tag="VIL14_02645"
     CDS             1216..>2226
                     /locus_tag="VIL14_02645"
                     /inference="COORDINATES: protein motif:HMM:NF013707.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016903 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:acceptor oxidoreductase family
                     protein"
                     /protein_id="HEY8522636.1"
                     /translation="MKDKIVNEITWLIGGAQGSGVDSAANIFSKTCAEDGLYIFGKRE
                     YYSNIKGEHSYFTVRVSNKPIRSHKESVDILVSFDAETVFRHAKDVSTDGIIIFNSEL
                     IETTINEIPTLDSDVQSKIMEYCNYSGGDPFTIKKLIEKIQQNSIKCYGIPYHQLLKN
                     FSEHTNNPALSKLARMINVLALSISLSFININRQALSRAIQYIFRTKPKIAEINVAAA
                     EYAYNYATQIFKNNKFTFYENERDFSDIILVQGSQSSALGKIVAGCRFQTYYPITPAS
                     EDSEFLETNQVIEQIDGNKGSVLVMQTEDEISAITMAIGGDLTGTRTATATSGPGFSL
                     MAE"
BASE COUNT          821 a          286 c          317 g          802 t
ORIGIN      
        1 ctatttgtta gaaagtctac aaaatttata tcttcttctt tttctttgcc taaatttaaa
       61 aaatttgcaa aattgttatt atccttcaca tgaatttcgt ctcctatgaa gattaaagaa
      121 aatatagaac catttagata aaaggaagta tgagaattat ctcctaaatt attagacaaa
      181 tttaaaattg gaatagattc tccaaaatag agaaatttga atattactaa aaaaactaaa
      241 gtaattacaa ataaaattat aagccatttc attaaacgac tctttatatt ttttaatatt
      301 attaaattta tatgattatt gctaccaata ccaaactaaa agatgagtct tatttttcta
      361 atctatttag cgtattttta atttcatcat ttctccaaac catttcttgt atctgctcaa
      421 gactaaaatc ttcattccaa gtatctagtg tagtttttgc tatttcggaa gtattatata
      481 ttatattcca ataaggatga tgttctgctg tagagtatga taactctaat atttcgttta
      541 aaccattttt agctttcttt aaaatcgagg tattagatgt atatattcca ataaatccag
      601 attccttatc aaatttagtg tttatatcta ttccttcttc ttttagatct gctataacag
      661 aacaaatagc attacaaatt ttattatatt ctgaatcttc agaaatcata ttttatatta
      721 tcttgtgtta cttatttata gattagaaat tatgggaaat agttatgata ttataagatt
      781 ttaatatcaa ataataatat atttctatat tattcctcat ccaaattatc tatgctttca
      841 aactcatcat aactttcttt caagtcctct tcaaattcgg tatcaagttc ttcattagac
      901 ataatatttt acttattata attaaaaaat aaatcttttg ataattatta aataatgaaa
      961 ttaaattgat ataaataatt atttataaga aggtatatga ttatattaaa aatgaatacc
     1021 acaatgaaaa agcctattgg ggataatgaa ccttcatgtg attattgtgg aaatcccata
     1081 gaaatatgta tgtgtgtatg tccatattgt ggagaaacta attcttgtga atgttgttta
     1141 tatgacgctg ttactggtgg tggatagtct acttttaaga tatttattag ataaaagcac
     1201 catgtaaatt atagaatgaa agataaaatt gtaaatgaga tcacttggtt aattggtgga
     1261 gctcaaggaa gtggtgttga ttctgctgct aatatctttt ctaaaacttg tgcagaagat
     1321 ggattatata tttttggaaa aagagaatac tattcaaata taaaaggcga gcatagctat
     1381 ttcactgtta gagtatcaaa taaaccaata cgatcacata aggaatctgt agatattcta
     1441 gtatcttttg atgccgagac tgtatttaga catgcaaaag atgtgtctac tgatggaatc
     1501 attatattta attctgaatt gattgaaaca acaataaatg aaattccgac gttagactca
     1561 gacgttcaaa gcaagataat ggaatattgt aattacagtg gtggtgatcc atttacaatc
     1621 aaaaaattaa tagaaaaaat acaacaaaat tctataaaat gttatggaat tccatatcat
     1681 caattattaa aaaacttttc agaacatact aataatcctg cattgagtaa acttgcaaga
     1741 atgataaatg ttttggcatt atctatatct ttatcattta ttaatattaa tcgtcaagca
     1801 ttatctagag caatacaata tatatttaga acgaagccaa aaatcgcaga aatcaacgtc
     1861 gccgctgcag aatatgctta taattatgct acacagatat ttaagaataa taaatttact
     1921 ttttatgaaa atgaaaggga tttttctgat attattttgg tacaaggaag tcaatcatct
     1981 gcattaggta agatagttgc cggatgtaga tttcagacat actatcctat aacacctgca
     2041 agtgaagata gtgaattttt agagacaaat caagtaatag aacaaataga tggcaataag
     2101 gggtcagtat tggtaatgca gacagaagat gaaatttctg caataactat ggctattggt
     2161 ggagatttga ctggaactag gactgcaact gcaacctctg gacctggttt ttcattaatg
     2221 gcggag
//
LOCUS       DATCMF010000211         1875 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_175924, whole genome shotgun sequence.
ACCESSION   DATCMF010000211 DATCMF010000000
VERSION     DATCMF010000211.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1875)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1875)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1875
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_175924"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            698..1090
                     /locus_tag="VIL14_02650"
     CDS             698..1090
                     /locus_tag="VIL14_02650"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY8522637.1"
                     /translation="MLSTITIKKPSIIVVDDEYDLVELFSEILRSDGYDVHAFTDPIS
                     AFKHVKDTPKKYSLLIIDYHMNKLNGCDLGIKIKELNNSIKVLNNSIKVILISSYENI
                     QGNRLGFELLNKPILIQTLLKKVKTYIK"
BASE COUNT          715 a          256 c          232 g          672 t
ORIGIN      
        1 aacgtagttc gattccatat aatagaatag aggagttgaa tattaaaaat gtctaataac
       61 caaactatta ttatagacaa aaattattat gacaaacaca attgtaaatt tgccttatgt
      121 gaatcatgtt attggtttgc tactatttta gtaaccaaat tcaatattaa ttgttgttat
      181 atttgtaaaa aaaaagatat tcatatggaa acaatactat tttaaaaata gtgtataaaa
      241 tatgaaattg tcctttgact atgaatatat tatgtaaaat aataatagat taaaaatatg
      301 tgttatggat tggtgtcaat gagtacacgc ttaccaatcc atacccagta tctttttgtg
      361 ggagctttta tgtagaatat ataacgtcaa ttataaattt aagattttcg tctgttatat
      421 ctctaaaata attctataac acataaaaat cctcaatctt tttatttttt atattacatt
      481 tctggctaaa tttttctcaa tgatagttta taaaataatg actaatagtt tagttaattg
      541 actgttgata gcacaccgag atcaagaaca caatacaaaa taaaatgtta acaatccttg
      601 ctacaccaaa tgccaacaat tacaaattaa tattttgatc tatagagaac atttagagaa
      661 aacttttctt ctatattata tttatataat tgaaggtatg ttatcaacta ttactataaa
      721 gaaaccttct atcattgtcg tcgatgacga atatgatctg gttgaactct ttagcgaaat
      781 cctaagatca gacggatacg atgttcatgc atttactgat cctatctctg cgttcaaaca
      841 tgttaaagat actcctaaga aatactcttt attgattatc gattatcaca tgaataaatt
      901 gaatggttgt gacctaggaa tcaaaatcaa agaattaaac aatagtatca aagtattaaa
      961 caatagtatc aaagtcattc ttattagctc atatgaaaac atacaaggta atagactcgg
     1021 atttgagcta ttgaacaaac cgatcttaat acagacattg ctcaagaaag ttaaaactta
     1081 cataaaataa taattagtta tatctatccc tgcccatgaa tctacttaat ctaaattctc
     1141 ttctaaagtt actgaaataa gtaatagatc gaactttata ttattcaaat aagattcaat
     1201 cgaattggtt ggaagaaatg aagtaatatt ataaacctca tacccttttt taagcaataa
     1261 cgattcaatt attttttcac ataaaattaa aaaagtaaaa tgaattgtat ataatagtaa
     1321 taaggttaag gaaatattgt tttttgttta tatctaatag ttacaagatt attattctgt
     1381 taccacatta ttctgttgcc aggtaaatat aaacaacaac agaaataaaa gaataaatta
     1441 tcaaattttt gaatctatca actcttatga ataaattttt ttgttaaaat attatcatca
     1501 aaaactttag tttaacacaa ggtatgcacg caaatggtcg attttatatc taccagatgc
     1561 aatgatttca cagttcaact aatcaattat gtgtaataac aaattaactt agtactgaac
     1621 tagacttgtg ttttggtatt aatattcaaa cagtcaaccg tgtaataacg atcttatact
     1681 catttaaatc ctgattgcaa attattcata gttatatgga tatataaact ttacaatatt
     1741 tagtatgatt tcttgaaatt tctctagaaa ttcttctatt tcttatactt ccatttacct
     1801 tgatactata actactagag gggagaaccg agagtgggac tcacttgggg ccatcatttt
     1861 acttcagtta aagtt
//
LOCUS       DATCMF010000212         2593 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_491358, whole genome shotgun sequence.
ACCESSION   DATCMF010000212 DATCMF010000000
VERSION     DATCMF010000212.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2593)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2593)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2593
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_491358"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..860
                     /locus_tag="VIL14_02655"
     CDS             <1..860
                     /locus_tag="VIL14_02655"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HEY8522638.1"
                     /translation="IIMSYSGHHFDTAHNLAHVLKDSSYFINIIGLALSGVQYNTRLR
                     ETNEKLSIQYQKVKESEKMKDEFINIAAHELRTPIQPILGLTDIMYSKIKDEDQRELL
                     DIIIRNAKRLKRLTDNVLDVTKIESQSLVFNKEKLNLNSVVSDVLKEYVNKNITQEMA
                     KIVYDFKPKNGIIVEADKDRLSQVIHNLLDNALKFTYYNQMIFVIVALNKDKEQVTVS
                     VKDTGEGIAEEILPNLFSKFKTYSNTGTGLGLYICKNIIESHGGKIWAENNYDGKGAT
                     FRFTLPIIK"
     gene            complement(1348..1893)
                     /locus_tag="VIL14_02660"
     CDS             complement(1348..1893)
                     /locus_tag="VIL14_02660"
                     /inference="COORDINATES: protein motif:HMM:NF024848.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="reverse transcriptase-like protein"
                     /protein_id="HEY8522639.1"
                     /translation="MRVLNIAIDADGSPSGYISWHNHFNKQSKIRSIKPSLKNEKFGI
                     QRMEMLAIFFAISDNLKAFKKIKRTRQIVIIRSDSRSTIEQLNNKAQINDKIIQRIYE
                     SIKRMLQKICFIIVFDHLNRTKNRAGRLLEKVFRRNPRYVNKKHNTKKIEKQYLYIQY
                     TQSNIKYENTFPNSTKPMLMH"
     gene            complement(2079..>2593)
                     /locus_tag="VIL14_02665"
     CDS             complement(2079..>2593)
                     /locus_tag="VIL14_02665"
                     /inference="COORDINATES: protein motif:HMM:NF013694.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="CorA family divalent cation transporter"
                     /protein_id="HEY8522640.1"
                     /translation="TTLTHLDLISKQSIMIRRYFWHARNIINYLKNTEQDNEDIKYLN
                     VVYDDINQLIDMVESYRDTINSTREIFSSSISLQLNETMRILTIFSTIILPLSLMISI
                     FSMEGFNLNNLTLIPRHFGIVVVVMVIMIGISLFLLWKKNWILSKDKKFNNEEENDND
                     NHQDKQNKKN"
BASE COUNT          913 a          325 c          365 g          990 t
ORIGIN      
        1 aaattataat gtcttattcc ggccatcatt ttgatactgc ccataatttg gcacacgttc
       61 taaaagattc tagttatttt attaatatta taggactagc attatcaggt gttcaatata
      121 atactaggtt acgagaaacc aatgaaaaac ttagtatcca atatcaaaaa gttaaggaat
      181 cagaaaaaat gaaagatgaa tttattaata tagctgcaca tgaattaaga actccaatcc
      241 aacctatact tgggttgaca gatataatgt actctaaaat taaagatgaa gatcaacgag
      301 aattattaga tattataata cgaaatgcaa aaagactaaa gcggcttact gataatgtat
      361 tggatgttac aaaaatagaa agtcaatctt tagtttttaa taaagaaaaa ctgaatctta
      421 atagtgtggt atctgatgtt ctaaaagaat atgttaataa aaatattaca caagaaatgg
      481 caaaaatagt atatgatttt aaacctaaaa atggtattat tgtagaagca gataaagata
      541 gattgtctca agtgattcac aatcttttag ataatgcctt aaaatttaca tattacaacc
      601 aaatgatatt tgttattgta gcattaaaca aagacaaaga acaagttaca gtcagtgtaa
      661 aggatactgg agaaggcatc gcagaggaga tattgcctaa tttgttttcc aaatttaaaa
      721 cttattctaa tactggtaca ggattgggac tatatatatg taagaatatt atagaatcac
      781 atggtggcaa aatctgggct gaaaataatt atgatggtaa aggagcaacg tttcggttta
      841 cattacctat tataaaataa tatacttaac aataatatct tataatgata aaaaataatg
      901 ataaaaatat tctacaatct ttgaggaacg caattcagga gttctccgag ttaatattga
      961 tactcctgat tagatctatc agaaatacct aattttttta tttagattgt ttttgtattt
     1021 aattttagat acttattata tatatccata tcttcttatt tatattatat cacataaaaa
     1081 tcagtataaa tgatcctcca ttaagctaat gcagtgtgta aggtgagcct ttatacttcc
     1141 aaatagcatt atattgttgt cttatgattg taatttataa tggaactaga taaaattaga
     1201 agaatttaat actattatat tgagactctc ttttttgcag gtatacatta gcgagactgt
     1261 gtttttagtt atgaagtatg atgacagaag aatgagtagt tagaagtata aataattgtt
     1321 cgagaagtaa cagttcattc gctttggtta atgcatcaac attggtttag ttgaattggg
     1381 gaatgtattt tcgtatttta tattagattg tgtatattga atgtatagat attgtttttc
     1441 tattttcttt gtattatgtt tcttatttac atatcttgga tttcttctaa aaaccttttc
     1501 taagagtctt cctgctctat tttttgttct attcaagtgg tcaaatacta ttataaagca
     1561 aatcttttga agcattcttt taatagattc atatatcctt tgaattattt tatcatttat
     1621 ttgagctttg ttatttaact gttctatagt tgaacgagaa tcacttctaa taataactat
     1681 ttgtcttgtt ctttttattt tcttaaatgc tttaagatta tcagaaattg caaaaaatat
     1741 ggcaagcatt tccattcttt gaataccaaa tttctcattt tttaaggaag gttttattga
     1801 tcttattttg ctttgtttat taaagtgatt gtgccatgaa atataacctg agggtgaacc
     1861 atctgcatca attgctatat ttaaaacacg caatctatag tatatctgtc cgatatatta
     1921 tatagtcatt acgcataacg ttgaaataat tttgttatgg ataattttct tgtaagaata
     1981 aatccaagca aaataagtct tttccttaac aacaattatt aaattacttt tgattatcta
     2041 aagtatgatt tctttagtat tggtaaattt atcttatttc aatttttttt attctgttta
     2101 tcctgatggt tatcgttatc attttcctct tcattattga atttcttgtc ttttgataag
     2161 atccaatttt ttttccaaag gagaaacagc gaaattccta tcatgatgac cataacaact
     2221 accactatac caaaatgcct tgggattaaa gtaagattat ttaaattaaa tccttccata
     2281 ctaaaaatac ttatcattag tgaaagtggg agaataatag tagaaaaaat tgttaatatc
     2341 ctcattgttt cattcaactg cagtgaaata ctggaagaaa atatttctct tgtagaattt
     2401 attgtatctc tatatgattc gaccatgtca attaattgat taatatcgtc ataaaccaca
     2461 ttaaggtact ttatatcttc attatcctgc tcagtatttt ttaaataatt tattatattt
     2521 ctagcatgcc aaaaatatcg tcttatcatt atggattgtt tggatataag atccaaatgt
     2581 gtaagagttg ttt
//
LOCUS       DATCMF010000213         2624 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_491424, whole genome shotgun sequence.
ACCESSION   DATCMF010000213 DATCMF010000000
VERSION     DATCMF010000213.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2624)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2624)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2624
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_491424"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2430
                     /locus_tag="VIL14_02670"
     CDS             <1..2430
                     /locus_tag="VIL14_02670"
                     /inference="COORDINATES: protein motif:HMM:NF021778.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-propeller fold lactonase family protein"
                     /protein_id="HEY8522641.1"
                     /translation="KLATIPGPALVFTEGDYVTVNIKDTDGNLITSEEFLASKPGTFL
                     YIDDSKSGENGLFGAVIVNPKNNVNTGLIKGKIQEFPVNKLDKDLILFMVGSTFWGME
                     IDNKNNYKQSPLWTNPTLTGVVDQKVRFHILGVGHAGNPTDHQHTFHLHAHRWVDPGT
                     NNIIDVKQIIPGKIHSFIIDVGDGVGPGHWQFHCHVFAHMEAGMMGAFNVVSGDPTIN
                     IPSEPGASPYKNFAAYELTDQPAKWFTNLAGDITNTGTESLAVINKSGSVNFMMSDVS
                     GVHTVTSFVYPKGAMNMPFDEITAYAGGGIVKLDHPGLYVFGCKLHPFMLGAVIADDP
                     STEGLDLGDEITLINGITVPTSSDLATRLLKAFFTFTATNNWQDYTSSSSSPPNPWHI
                     SYPDVDVRITNGTVVNLKDTLESRYGQNLTLDKLNNPDIPGVGEVWIDTQFEKTASKS
                     KPGTATAINATIWEITKKVALPEINMNNAHNMWTDKDQNLIYATQWFDNKTSIFDRNT
                     GKLVNNIEVGHDPSHVMTSTKTDELMVALHGEQGVALLGPKGESLKKVIPMQFPGQDP
                     SHPHGHWMSDRYMVTPDEFTGTATIYDMLENKILAKVKTGHSPIAIGMTPDGSKSYVA
                     DFFDSTVSVVDTANGTLVKTINLLENYDPISGNVSGPIGFLPIQTPVSPDGQYMVTAN
                     TGSGTITIIDTEKDELVKDLPCSAGCHGVNFGAKKNGGYYAYVSSSFSNDLVIVDGDP
                     NKDGDPIDAEIAGRISLAGSPETQVDDKVTALPGTGGMGVLPIPIIYNGWVQNLPEEW
                     KSLLTEEQQNP"
BASE COUNT          907 a          452 c          527 g          738 t
ORIGIN      
        1 aaattagcta ctattcctgg tccggcatta gtttttactg aaggtgatta tgtgaccgtc
       61 aatattaaag atacagatgg caacctcatc actagtgaag aatttttagc atctaaacca
      121 ggaacttttc tatatattga tgatagcaaa agcggagaga atgggctctt tggagcagta
      181 attgtgaatc caaagaataa tgttaataca ggtctgataa aaggtaagat tcaagaattt
      241 cctgttaaca agttagataa agatctaatc ctgttcatgg ttggttctac attttggggt
      301 atggaaattg ataataaaaa taattataaa caaagtcctt tatggacaaa tcccactctg
      361 actggagtag tagaccaaaa agtacgtttt catattttag gagtaggtca tgcaggtaat
      421 cctacagatc atcagcatac atttcatctt catgcacata gatgggtaga tcctggaacc
      481 aacaacataa tagatgtaaa acagataatt ccaggtaaaa ttcattcttt tataattgat
      541 gtaggagatg gagtggggcc agggcactgg cagtttcatt gtcatgtatt cgcacatatg
      601 gaagcaggaa tgatgggagc atttaatgtt gtatcaggcg atccaactat aaatatacca
      661 agtgaaccag gtgcttcacc ctacaagaac tttgcagcat atgaacttac tgatcaaccg
      721 gctaaatggt ttactaattt agctggagat ataacaaata caggaacaga atctcttgca
      781 gtcattaaca agtctggtag tgtcaatttc atgatgtctg atgtaagtgg agtacatacc
      841 gttacaagtt ttgtttatcc caaaggggcg atgaatatgc cttttgatga gataacagcc
      901 tatgctggag gtggtatagt aaaacttgac catcctggcc tgtatgtatt tggttgtaaa
      961 ttgcatccct ttatgttagg tgccgtaata gctgatgacc cttctactga aggtctagat
     1021 cttggagatg aaattacctt gataaacggt attacagtac caacaagcag tgaccttgca
     1081 acaagactct taaaggcatt ctttaccttt actgctacaa ataactggca agattatact
     1141 tcatcatcat catctccacc caatccatgg catatatcat atcctgacgt agacgtaaga
     1201 ataactaatg ggacagtcgt gaacctaaaa gacactctag aaagcagata cggccagaat
     1261 ttgaccttag ataagttaaa taatccagat attcctggag taggagaagt ttggatagat
     1321 acccaatttg aaaagacagc aagtaaatca aaacctggta ctgccactgc gattaatgct
     1381 actatatggg agataacaaa aaaagttgcc ctgccagaaa taaatatgaa taatgctcat
     1441 aacatgtgga ctgataagga tcaaaatttg atatatgcaa cacagtggtt tgataacaag
     1501 acctccatat ttgatagaaa cacaggaaaa cttgtcaaca atattgaggt cggccatgat
     1561 ccttctcacg taatgacaag tactaaaaca gatgaactta tggtagcatt acatggagaa
     1621 caaggagttg ctctccttgg tccaaaaggc gaatcattaa aaaaagttat accgatgcaa
     1681 ttccctggcc aagacccatc tcatccacat ggacattgga tgagtgatcg ttatatggta
     1741 actcctgatg aattcacagg tactgcaaca atctatgata tgttggaaaa caaaattctg
     1801 gcaaaagtaa agacaggaca tagtccaata gctattggaa tgactccgga tggaagtaaa
     1861 tcctatgttg cagatttctt tgatagtacg gtaagcgtag tagatactgc caatggtaca
     1921 ttggtcaaaa caataaatct gctcgaaaat tatgatccta tttctggaaa cgttagtgga
     1981 ccaataggtt tccttccaat ccaaactcca gttagtccag atgggcagta catggtgaca
     2041 gcaaatacag gaagtggcac aataacaata attgatacag agaaagatga gttggtaaaa
     2101 gatttgcctt gtagcgctgg atgtcatgga gttaactttg gcgcaaagaa gaatggcggt
     2161 tattatgcat atgtctctag ttcattttca aatgacctag taatagttga tggggatccc
     2221 aacaaagatg gtgatccaat cgacgcagaa atagcagggc gaattagtct agcaggttcg
     2281 ccagaaactc aggtagatga caaagtcact gcattgccag gtacaggagg aatgggtgta
     2341 ctacctatac ctattattta caatggttgg gttcaaaacc ttcctgagga atggaaatct
     2401 ctgcttactg aagaacaaca gaatccctag gcacaacaga aagaaaataa agaatagaaa
     2461 actagaagta tgaaaagaaa ttgagtagga gtaactaaat actacactcc tatatttttt
     2521 aaacgccttt aattaatagt ttatttgtag ttgatgcttt ttttatcata attaatctca
     2581 taaatctaaa ctaataccag gttaaacatg taaaaatata tttc
//
LOCUS       DATCMF010000214         1689 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_359613, whole genome shotgun sequence.
ACCESSION   DATCMF010000214 DATCMF010000000
VERSION     DATCMF010000214.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1689)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1689)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1689
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_359613"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            45..1202
                     /locus_tag="VIL14_02675"
     CDS             45..1202
                     /locus_tag="VIL14_02675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiolase domain-containing protein"
                     /protein_id="HEY8522642.1"
                     /translation="MENVCILGAGSTKYGRLNESIIEIALTASVDAIESAGLSPRDIQ
                     AGYISNVFGVADKQVHMAPVIMSDLGISHVPGLTIESACGSGSVMFREAFANIRAGFY
                     DCVLALGVEKITHTGTNQSTTLFSYCSDFFYEGGNGASFPGLFASIARAYMTKYKADE
                     EDLAHVAVKNHENGLLNPKAHVRKKITVEDVLNSPVVASPLKLYDCCPFSDGASAVIL
                     CNENFAKKSGKPYIQVIGSGRGGSPAAVQGRTDISTIPGTVIAADQAYKMAGISAHDV
                     DFAEVHDCFTIAEIIDVEDLGFFQKGKAAREIREGATSRKGKIPINPSGGLKSKGHPI
                     GATGIGQIVEVFEQFSGQAGERTIKNAEIALTHNFGATGASAAVHIFKKVN"
     gene            1208..1594
                     /locus_tag="VIL14_02680"
     CDS             1208..1594
                     /locus_tag="VIL14_02680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide-binding protein"
                     /protein_id="HEY8522643.1"
                     /translation="MNNPNNIGVREKFIASAQNSKILARKCNDCNTIMLATILYCEKC
                     HGKKFNLIEYPGRGSVNTFTIHTVPPEGFEDVDSYAWVIFTLDDILLRASGFLPDIKK
                     PSDLPIGSRIKVERFDEKHGLVLKKL"
BASE COUNT          527 a          263 c          355 g          544 t
ORIGIN      
        1 tgagctgtct aaccttttta taatataccc taataattta tgctgtggag aatgtttgta
       61 ttttaggagc tggtagtact aagtatggta ggcttaatga gagtattata gaaatagccc
      121 ttactgcatc agttgatgca attgaatcgg cagggttatc ccccagagat attcaagcag
      181 gatatatttc aaatgttttt ggtgttgccg ataaacaagt acatatggct ccagttatta
      241 tgagcgattt aggaatttct catgttccag gtttgactat tgaatcagcc tgtgggtcgg
      301 gttcggtgat gtttagagaa gcatttgcaa atatacgtgc aggattttat gattgtgtgt
      361 tggctttagg ggtggaaaaa ataactcata ctggaactaa tcagagtaca actctgtttt
      421 cctattgttc tgatttcttt tatgaaggcg ggaatggtgc ctcattccct ggcttgtttg
      481 cttcaattgc acgggcatat atgactaagt ataaagccga tgaagaagat ttagctcatg
      541 ttgctgtaaa aaaccatgaa aatggactgc taaatcctaa ggctcatgta cggaaaaaga
      601 taaccgttga agatgtgctt aattcccctg tagtcgcttc accgttaaaa ttatatgatt
      661 gttgtccatt ttcagatggt gcctcggcag taattctctg caatgaaaat tttgccaaaa
      721 aaagtgggaa accatatatt caagttattg gatcgggcag aggaggctct cctgctgcag
      781 ttcaaggtag aactgatata tccactattc caggtacagt tattgcggct gatcaagcct
      841 ataaaatggc tggaatatct gctcatgatg tcgactttgc tgaagtccac gattgtttta
      901 caattgcgga aataatagat gtagaagatt taggtttttt tcagaaaggt aaagcagcga
      961 gagaaattag agagggagct acttccagaa aaggaaagat tccaattaac ccatcaggag
     1021 ggttgaaatc aaaaggtcat cctatcggag cgaccggaat tggtcaaatt gttgaagtgt
     1081 ttgaacagtt ctctggacaa gctggagaaa gaactattaa aaatgcagaa attgctttaa
     1141 ctcataattt tggtgcgact ggtgctagcg ctgctgttca tatatttaaa aaggtgaatt
     1201 aatccacatg aacaatccca ataatatagg agttagagaa aaatttattg catctgcgca
     1261 gaactccaag atattagcga ggaaatgtaa tgattgtaac accattatgc tcgctacgat
     1321 attatattgt gaaaaatgtc atggtaaaaa atttaatcta atcgaatatc cagggagagg
     1381 ttctgtaaat acatttacta ttcatacagt acctcctgaa ggatttgagg atgtagatag
     1441 ttatgcttgg gttatcttca ctctagatga tattttactt cgggcttctg gatttttacc
     1501 tgatatcaaa aaaccatcag atttacctat tggatccaga attaaagtcg agcggtttga
     1561 tgagaaacat ggattagttt tgaaaaaact ttgatctttt ttaatattta cctttataat
     1621 tagctttaat atcgaactaa actttatgaa atcaatttgt ctagttagat taactctaac
     1681 cttaacatt
//
LOCUS       DATCMF010000215         1682 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_491779, whole genome shotgun sequence.
ACCESSION   DATCMF010000215 DATCMF010000000
VERSION     DATCMF010000215.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1682)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1682)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1682
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_491779"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            92..673
                     /locus_tag="VIL14_02685"
     CDS             92..673
                     /locus_tag="VIL14_02685"
                     /inference="COORDINATES: protein motif:HMM:NF021246.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="poly(R)-hydroxyalkanoic acid synthase subunit
                     PhaE"
                     /protein_id="HEY8522644.1"
                     /translation="MIDRVSFHENSNIPFEEVLKKYQEFWKKFYNIPKFSPFSLTEET
                     SNLIQNLQDLILITSKIQYFNLNYVTQINKTYTEALDKIPPNKSELNSLQSEQDLKKY
                     RSFLLGTLEESFTNLFQSREFGVLVSDLMGAYSEYNKLLRNISNTYLLSLNLSSKDDV
                     DILLKDMQELKREVRDLRKSIDIIMSEENQVAK"
     gene            663..>1682
                     /gene="phaC"
                     /locus_tag="VIL14_02690"
     CDS             663..>1682
                     /gene="phaC"
                     /locus_tag="VIL14_02690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class III poly(R)-hydroxyalkanoic acid synthase
                     subunit PhaC"
                     /protein_id="HEY8522645.1"
                     /translation="MQNNTTTTPPSKEKSPNVSISIDKYNQDLSEKIDKLTQLYQNPK
                     DIDVGSTEHQIIKETNIYRLLHYKPIFKTPIKTPILVVYALINRSYILDLQRDKSWIK
                     NLLFQGFDVYLIDWKPPTLNDKYINFDDYVNDFIDDCVNLIINQGSVDKITLHGYCMG
                     ATMSVMYTTLHQRKIKNLVTLAPVIDTSKDLTVIGNFGRTMNVDRIIDSVGNMPPQLL
                     RTCFSALKPFKQGMNKYFTLVEHIDDEKFVQNFLRIEKWLYDVPPITGEVFKQWIKDI
                     YQNNLLAKNKLKLGSKVIDLSKIYIPLLNIVADEDHLVSPEGSAALNNLVSSSDNRLM
                     RFPTGH"
BASE COUNT          648 a          255 c          238 g          541 t
ORIGIN      
        1 aaattaaaac tcaaatttta gtaaagttat aattctatca attgaaatta aacacaaaaa
       61 gatatataat ttttcataca tacaatggta tatgattgat agggtatctt ttcacgaaaa
      121 ttctaatatt ccctttgaag aagtattaaa aaaatatcag gaattttgga aaaaatttta
      181 taatataccc aagtttagtc cattttcttt aacagaagaa acttcaaatc tgattcaaaa
      241 tttacaggat cttatactta ttacctcaaa aatacaatat tttaatttaa attatgtaac
      301 tcaaattaat aaaacatata cagaggcctt agataaaata cctccaaata aatctgaatt
      361 gaattcactt cagtctgaac aagatttaaa gaaatacaga agtttccttc ttggaactct
      421 cgaagaatcg tttactaact tgttccaatc tagagaattc ggagtgcttg tttcagattt
      481 gatgggtgct tattctgaat ataataaatt attgagaaat atatccaata cctacctgtt
      541 atctttaaat ctttcttcta aagatgatgt agatatcctt ctcaaagata tgcaagaatt
      601 gaaacgtgaa gttcgagatt taagaaaaag tatagatatt ataatgagtg aagagaatca
      661 agttgcaaaa taacaccact accactcctc ccagcaaaga aaaatctcca aatgtatcta
      721 tttctataga taaatataat caagatctat cagaaaagat agataaatta acacaactct
      781 atcaaaatcc taaggatatt gatgtgggta gtactgagca tcaaataata aaagaaacca
      841 acatctatcg gttattgcat tacaagccga tttttaaaac acctattaaa acccctatct
      901 tagttgttta tgccttaatt aatagatctt atatattaga cttacagcgt gataaaagtt
      961 ggatcaagaa tcttttattt caaggatttg atgtttatct tattgactgg aaaccaccca
     1021 ctttaaatga caaatatatt aattttgacg attatgtaaa tgatttcatt gatgattgcg
     1081 ttaacctaat tataaatcaa ggttctgtag ataagataac cctgcatgga tattgcatgg
     1141 gagcgacaat gtcggtaatg tacacaactt tgcatcaacg taaaattaag aatttagtaa
     1201 ctttagcacc tgtaattgat acgagcaaag atcttacagt tataggaaac ttcggcagaa
     1261 cgatgaatgt tgatagaatt atcgattccg taggaaatat gcctccacaa ttacttcgaa
     1321 catgcttttc ggctcttaaa ccatttaaac aaggcatgaa caaatacttc acactcgtag
     1381 aacatataga tgatgaaaaa ttcgttcaaa acttcttaag aatagaaaaa tggttgtatg
     1441 atgtacctcc tataacggga gaagtattta aacaatggat caaagatata taccaaaata
     1501 atcttttagc aaaaaataaa ttgaaattag gatctaaagt tatagattta tcaaaaattt
     1561 atatcccttt gttaaacata gttgctgatg aagaccatct tgtttctcct gaaggtagcg
     1621 ccgcattaaa caatctcgta tcgagtagtg acaatagatt aatgagattt ccaactggcc
     1681 at
//
LOCUS       DATCMF010000216         3923 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_177857, whole genome shotgun sequence.
ACCESSION   DATCMF010000216 DATCMF010000000
VERSION     DATCMF010000216.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3923)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3923)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3923
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_177857"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1380)
                     /locus_tag="VIL14_02695"
     CDS             complement(<1..1380)
                     /locus_tag="VIL14_02695"
                     /EC_number="6.5.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008452 - RNA ligase activity [Evidence
                     IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RtcB family protein"
                     /protein_id="HEY8522646.1"
                     /translation="MNKIITKHGNHVIEKLNEFEFKINIDDSKKMNVPVTIYADDNLI
                     LKMSEDRTLDQAVNVSTLPGVRKHVVVLPDGHEGYGFPVGGVAATDMEEGVISPGGVG
                     YDINCGVRLLRSNLNVNQVKPHLKDLVNELFNSIPSGVGSEGAIKLTRSELDELLIEG
                     VDWAIEHGYGYKQDSEVCEEKGRMIGANPESVSDTARKRGSPQLGSLGSGNHFLEIQQ
                     IQEIFDENAAKVMGLEKGKITVLIHCGSRGFGHQVCSDYLRYSEKSLKKYNIELIDRE
                     LACVPNNSIEGENYRKAMYSALNFAWSNRQIITHFTRKTFEKIFSSSETGLDMKLVYD
                     VAHNIAKVERHKVDGEGMRDLVIHRKGATRAFPAGMEQVPEKYRQIGQPVIIPGSMGT
                     ASWILVGNKKSLDLSFGSTAHGAGRTMSRGAAKRSSTVEKVKAELDSKGIYIKALTKN
                     GIVEETPLAY"
     gene            2180..2803
                     /locus_tag="VIL14_02700"
     CDS             2180..2803
                     /locus_tag="VIL14_02700"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HEY8522647.1"
                     /translation="MFTGIIESLCEIKSIDEIKKGNSKYPAEIKFSIDIGNLSKGLKI
                     GQSIAVNGVCLTITKLNNNIAEFSVIGETVRKTCLDSIKKGERVNIERSMRASDRFDG
                     HFVQGHVDCTGIIYDKIVFPTETKLIIKISEELKESFQYIVRKGSITIDGISLTVVDI
                     DNKNLLSISLIPYTLKKTTLGIKSIGDKVNIEFDLIGKYISKLLPKN"
     gene            2859..3539
                     /gene="ribB"
                     /locus_tag="VIL14_02705"
     CDS             2859..3539
                     /gene="ribB"
                     /locus_tag="VIL14_02705"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008686 -
                     3,4-dihydroxy-2-butanone-4-phosphate synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3,4-dihydroxy-2-butanone-4-phosphate synthase"
                     /protein_id="HEY8522648.1"
                     /translation="MSTVKDAIDALSRGKFVLIHDDDSRENETDMIIAAENITPYHIA
                     TIRNDAGGLLCLAIDSYISTKLGLSYIHDILNCVSNDHPLFTTMTNGRAPYGDKPSFS
                     ISVNHRDTYTGITDYDRALTISKLASVCRNIDNGGVSEFIKCFRTPGHVSLLIAAKGL
                     LKERFGHTELAVYLAKIAGLTPAVVICEMLDSHTFRSLSIDEAYKYAKLKDIPLLEAD
                     QLKTYSVI"
     gene            3547..>3923
                     /gene="ribH"
                     /locus_tag="VIL14_02710"
     CDS             3547..>3923
                     /gene="ribH"
                     /locus_tag="VIL14_02710"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020248448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009349 - riboflavin synthase complex
                     [Evidence IEA];
                     GO_function: GO:0000906 - 6,7-dimethyl-8-ribityllumazine
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HEY8522649.1"
                     /translation="MVKVHLAIVVSEFNHEITDVMLEEARVQASKLNSNVSHICYVPG
                     TFDMPLIISHLLQNNTIDAVITLGAVIKGDTNHDIIIAETTARLISDLSLQYKKPIAL
                     GISGPNMTIEQAWERAKIVPIRAV"
BASE COUNT         1287 a          643 c          532 g         1461 t
ORIGIN      
        1 ataagctaaa ggtgtttcct ctactattcc attttttgtt aatgctttta tatagatccc
       61 ttttgaatcc agttcagctt ttactttttc aactgtagaa cttcttttag ctgcacctct
      121 tgacatagtt cttcctgctc catgtgcagt tgatccaaaa cttaaatcaa gagatttttt
      181 atttcctact aatatccaac ttgctgttcc catcgatcct ggtataatta caggttgacc
      241 tatttgccga tatttctctg ggacctgttc catacctgca ggaaaagctc tcgtcgcacc
      301 ttttctatga attactaaat ctctcattcc ttctccatca accttatgac gttctacttt
      361 tgctatatta tgtgctacat cataaaccaa tttcatatct aatcctgttt ccgaactcga
      421 aaatattttc tcgaatgttt ttctagtaaa atgagtaatg atttgcctat tggaccatgc
      481 aaaattcaaa gctgaataca tcgcttttct ataattttct ccttcaattg aattatttgg
      541 aacacatgct agttctctat caattaattc aatattatat tttttcaagg atttttcgga
      601 ataacgtaaa taatcactac atacttggtg accaaatcct cttgatccgc aatgtattag
      661 tactgttatt ttaccttttt ctaatcccat cacctttgct gcattttcat caaaaatttc
      721 ttggatttgt tgaatttcta gaaaatgatt ccctgagcct aagctcccta actgaggaga
      781 tcctcttttt ctggccgtat cagacacact ttctggatta gctcctatca ttctcccttt
      841 ctcttcgcat acttcagaat cttgtttata cccataacca tgttcaatag cccagtcgac
      901 tccttcgatc aataattcat ctaattctga tctagtgagt ttaatagctc cttcactacc
      961 tacgcctgat ggtattgaat taaataattc atttactaaa tcttttaaat gaggtttaac
     1021 ttgatttacg ttaagatttg atctaagtaa tcttactcca cagttaatat catatcctac
     1081 acctcccgga ctaataaccc cctcttccat atcagtagct gctactcctc caaccggaaa
     1141 accatatcct tcatgaccat ctggcaatac aactacatgt tttcttacac cagggagtgt
     1201 tgaaacattg acagcttgat ctaatgttct atcttcactc atttttaaaa tcaagttatc
     1261 atctgcataa atcgtaactg gtacattcat ttttttagaa tcatcaatat taattttaaa
     1321 ctcaaattcg tttaatttct caataacatg atttccatgt ttggttatta ttttattcat
     1381 tgtatttggt tatttttatt attattataa gccttgcttg acaattaaag aaattttatc
     1441 aaagcttaaa tatatgattc gaatctttta attaacttta taaatgccct aatactattg
     1501 cttcagcctt ttctatttct tcatcgattt tctatatatt aacttattat aataactaca
     1561 aacatacaca tactgtttgt tatttctgat aatctaggca aattgaaaca ttatcttctg
     1621 tttctgttaa tatttgtaaa ttaaattttt ttttctaatt ttttcatctt taatattcta
     1681 aattaatcat tttggctaga agtatcaatt tttgatttct agttttacta ttattataag
     1741 aacagaaaaa taatcaccat tataatctac tattttttag aaagatcctt tgcatcttat
     1801 taaaataatc tttttctcaa tcttgaaatt gtcaataata caataattgt cttatgtatg
     1861 agttaatttt attctattat gttttcaagc ctttgacata tattaatccg tcaattcaat
     1921 taaacttcat tcattattat agatgatgtg taactagcct tataggatat taattactct
     1981 cagcatttca atacccacca tttttgtagt aataaattca ttaaactctt gtcttataaa
     2041 agagatctga ttcattttct ctaaagagag agtaaatata taaaatatct ctttctaaat
     2101 ttttattttt attatatgaa tgtaattaat agttgtgtat ttatttatct tctttaacaa
     2161 taaataatga aattctataa tgtttactgg tataatagaa tctctgtgtg aaataaaatc
     2221 tattgacgag ataaaaaaag gtaattcgaa gtatcctgct gaaattaaat tttctataga
     2281 tattgggaat ttaagtaagg ggttaaagat tggtcaaagt atagcagtaa atggagtttg
     2341 tttaacaata accaaattaa ataataatat tgccgaattt tcagtaattg gagaaacagt
     2401 aagaaaaaca tgtctagatt caataaagaa aggcgagaga gttaatattg aaagaagtat
     2461 gagagcttcc gacaggtttg atggtcattt tgttcaaggc catgtagatt gtacaggtat
     2521 tatctacgac aaaatagttt ttcccacaga aacaaaactt attatcaaaa tctctgaaga
     2581 actaaaagag tctttccaat atatagtacg aaagggttca attacaattg atggaattag
     2641 cttaaccgtt gtagatattg acaataaaaa cttattatcc atatctttaa ttccttatac
     2701 gttaaaaaaa actactttag gaataaaatc aatcggagat aaagttaata ttgaatttga
     2761 tcttattggt aaatatattt caaaactttt accaaaaaat tagtaataac aaattttgta
     2821 gtaagatata taattactgc tgtttttata atgtgtgttt gtcaactgta aaagacgcta
     2881 tagatgcgct cagtcgagga aaatttgttc ttattcatga tgatgacagt agagaaaatg
     2941 aaactgatat gataatcgct gcagaaaata taacaccata tcatatagca actataagaa
     3001 atgatgcagg gggcctattg tgcctagcta tagatagtta tatttctacg aagttgggat
     3061 tatcatacat acatgatatt ttaaactgtg tttctaatga tcatccttta tttaccacta
     3121 tgacaaatgg tcgtgctcca tatggagaca aaccttcatt ctcaatttct gttaatcata
     3181 gagatactta caccggaatt actgattatg atcgtgcatt aacaatttcc aaacttgcat
     3241 cagtttgcag aaatattgat aatggtggag tatcagaatt tatcaagtgt tttagaactc
     3301 caggtcatgt ttccctattg atcgctgcaa aaggtctatt aaaagaacga tttggtcata
     3361 cagaacttgc tgtttatttg gcaaagattg caggtctaac cccagctgtt gtaatatgtg
     3421 aaatgcttga ttctcatact tttagatctc tttctattga tgaggcatat aaatatgcaa
     3481 aattaaaaga tattccttta ttagaagctg atcaattaaa gacatattcg gtgatttaaa
     3541 tttcaattgg tcaaagttca cttagcaata gttgtttctg aatttaatca tgaaattact
     3601 gatgtaatgt tagaagaagc aagagttcaa gcatcaaagt taaactcgaa tgttagtcat
     3661 atttgttatg ttccgggaac gtttgatatg cctctaataa taagtcattt gttacaaaat
     3721 aatactattg atgctgtaat tactttagga gcagttataa aaggtgatac aaatcacgat
     3781 ataataattg ctgaaactac agcaaggttg atatcggatt tatcattaca atataaaaaa
     3841 ccaattgctc taggtatatc tggacccaac atgactattg aacaagcatg ggaaagagca
     3901 aaaatagttc cgatacgtgc agt
//
LOCUS       DATCMF010000217         2345 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_426055, whole genome shotgun sequence.
ACCESSION   DATCMF010000217 DATCMF010000000
VERSION     DATCMF010000217.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2345)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2345)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2345
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_426055"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(166..354)
                     /gene="spt4"
                     /locus_tag="VIL14_02715"
     CDS             complement(166..354)
                     /gene="spt4"
                     /locus_tag="VIL14_02715"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003711 - transcription elongation factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor subunit Spt4"
                     /protein_id="HEY8522650.1"
                     /translation="MPRELACKKCKAITVGKVCPICNSTDLSSDWSGIVIVFDSKTSL
                     IAKTLEISIPHKYALKVS"
     gene            complement(358..948)
                     /locus_tag="VIL14_02720"
     CDS             complement(358..948)
                     /locus_tag="VIL14_02720"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase"
                     /protein_id="HEY8522651.1"
                     /translation="MFYIVSMTDIVRIPPSRLTNSLRNTAIGILKEKYESMISAELGY
                     VIMIIDAHADSVGKLVTGDGATYHKVTFKALTFFPKIQEIVEGEIIEITDFGAFVRIG
                     PTDALLHLSQITDDYLKSDIKQGLIIANQSSRSLRIGSKMRARITAVSLGKGSSMGKI
                     GITCRQPFLGSFDWIKEEIEKAKTPQAPKEKKGVAK"
     gene            1103..2227
                     /locus_tag="VIL14_02725"
     CDS             1103..2227
                     /locus_tag="VIL14_02725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0140663 - ATP-dependent FeS chaperone
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Mrp/NBP35 family ATP-binding protein"
                     /protein_id="HEY8522652.1"
                     /translation="MMVTVDQVLTSLKKVIDPELHKDIVSMGMIKEMAINNDKISFTL
                     ELTTPACPFNSEIEQDVRNVISDLGVKDLDLKVTARVMEGRAISLDELLPGVKNIIAV
                     ASGKGGVGKTTVSVNLAIALAKTGAKVGLLDADIYGPSVPLMLGLKDSPQVLDGKIQP
                     PISEGVKIISMGFFYEQSQQAGIYRGPIISGIIKQFLTDVNWGEIDYLIIDLPPGTGD
                     APLTIAQTIPITGILVVTTPQEVAMNVAVKAIGMFNKLNVPIIGVIENMSYLECPHCH
                     SNIHIFGQGAGQKISDQFKIPYIGDIPLHPQIMHGSDIGKPVIISDPESSQTKSFLKI
                     SKLVAGRVSVLAAEMQAQEQYEEKQEKSENNNLKQAENAS"
BASE COUNT          815 a          373 c          408 g          749 t
ORIGIN      
        1 ttccgcagat aatgcctata aaatctgatt taaatatgat tgtggcagtt accgatttat
       61 tagaattttc tagattttca ctagtaatat cacctgttcc aatgtcttcc tgtaaaaaat
      121 ataataagga ctttctaaga ttaaaatgat cagataattt tttcattaag agactttaag
      181 tgcatattta tgcggtatag atatttctaa agttttagca ataagagatg ttttggaatc
      241 aaaaacaatt actattccgg accaatcact agaaagatcg gttgaattac aaataggaca
      301 aacctttccc actgtaatag ctttacattt tttacaagct aattctcgtg gcatttatta
      361 tttggctact cctttctttt cttttggggc ttgcggtgtt ttagcctttt ctatttcttc
      421 tttaatccaa tcaaatgaac ctaaaaatgg ctgtctacat gtgattccta tctttcccat
      481 tgatgaccct ttacctaggc ttaccgctgt aattcttgca cgcattttcg aaccgattct
      541 caaggaacga gaagattggt tggcaattat taacccttgt ttgatgtcac tttttagata
      601 atcatcagtt atttgagaga gatgtaaaag agcatcagtt ggtccaattc ttacaaaggc
      661 accaaaatca gttatttcta tgatttctcc ctctactatt tcttgaattt taggaaaaaa
      721 agttaaggct ttgaatgtta ccttatgata agtagcacca tctccagtaa ctaatttacc
      781 aactgagtca gcatgagcat caataatcat tataacataa cccaactctg cgctgatcat
      841 actttcgtat ttttctttta gaatcccaat tgcagtattt cgtaatgaat tggtaagtct
      901 gcttggtgga attctaacaa tatcagtcat agaaactata taaaacatgt tggacgagat
      961 aggatataat atatcaattt atgaaccttt tgtttgtata ttcgaaaaga aacaaaacag
     1021 cacagagaga aaaattatct tgaatacaat ctgacattat ggtaaaatca atatttaaat
     1081 attatgaaag gactttgtgt ttatgatggt tacagttgat caggttctta cttccttaaa
     1141 aaaagtaata gatcctgaat tacataaaga cattgtctct atgggtatga taaaagaaat
     1201 ggctattaat aatgataaaa tatctttcac attagaactt actactcctg catgtccttt
     1261 caatagtgaa atagaacaag atgtaagaaa tgtcatttca gatttaggtg ttaaagattt
     1321 agatctaaag gttaccgcaa gagtgatgga aggaagagct atttctttag atgagctatt
     1381 accaggggta aaaaacatca ttgcagtagc tagtggcaaa ggaggtgtag gcaaaacaac
     1441 agtgtctgtc aaccttgcaa tagcgcttgc aaaaactggg gcaaaagtag gtctgttaga
     1501 tgctgatatt tatggaccaa gtgtaccatt aatgcttgga ttaaaagatt ctcctcaggt
     1561 attggatggt aaaattcagc ctccaatttc agaaggagta aaaattattt cgatgggctt
     1621 tttttatgaa caatcccaac aagcaggaat ttatcgtggg ccaataattt ccggaattat
     1681 taaacaattt ctaactgatg taaattgggg tgaaattgat tatcttatta ttgatttacc
     1741 accaggaaca ggtgatgcac cattaactat tgctcagaca attccaatta ctggaatttt
     1801 agtggtaaca acaccacaag aagttgcaat gaatgtggca gtaaaagcaa tagggatgtt
     1861 taacaagtta aatgttccga ttataggtgt catagaaaac atgagttatc tagaatgtcc
     1921 acattgccat tctaacatac atatttttgg acagggtgca ggccaaaaaa taagtgacca
     1981 atttaagatc ccctatattg gagatatccc tttacatcca caaataatgc atggaagtga
     2041 tatagggaaa cctgttatta tctcggatcc cgaatccagc cagacaaaat cattcttaaa
     2101 aatttcaaaa ttagttgctg gaagggtaag tgttttagcg gcagaaatgc aggctcagga
     2161 acaatatgag gaaaaacaag aaaaatccga aaacaataac ttaaagcaag cagaaaatgc
     2221 ctcttaaaga tgagcatgta aatattctaa aaaaaccttt tggtgaatta ataaaacaag
     2281 aagaaatctc taaacaaaaa atctgttctt tggtgaaaga ttcgaaagca ttgataacag
     2341 ttgga
//
LOCUS       DATCMF010000218         1705 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_360896, whole genome shotgun sequence.
ACCESSION   DATCMF010000218 DATCMF010000000
VERSION     DATCMF010000218.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1705)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1705)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1705
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_360896"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1705)
                     /locus_tag="VIL14_02730"
     CDS             complement(<1..>1705)
                     /locus_tag="VIL14_02730"
                     /inference="COORDINATES: protein motif:HMM:NF012492.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEY8522653.1"
                     /translation="FQEEAIFNILRGKNTVIIAPTASGKTEAFCIPILQKIYDLKNQL
                     NSNIVKFSYNQNKFDARQIKAVFIYPTKALARDQLSKIMEYSNNMDIVVKIFDGDLNA
                     NEKQNFYEFPPDIVLTNFDSIHYHLLNNTKLIKLLNTLEFLVVDEVHSYTGIFGSNVH
                     YIIKRLERIINNKKLQLIACSATLPNVKEFCDLLFSRDMEIVNGIGKKGDTNFAILYP
                     SLRSNKSLVIELIKKITQNHKTLVFSNSHLSAELIAYTSSKQGIKIGIHRAGLLPKNR
                     KMVENSFKNGMIDVISSTPTLELGIDIGDVDAVISNLVPINRLLQRLGRAARKGQEGY
                     AFLTLGNDPISQYYKNHPADYFVDEEIPYIDPFNPVIMENQVLAMCVDRPISKLESKD
                     YLETLSKLERKELVIFSNGKYIPNSEKHNVLKNYSIRGIGNDVDIILNGKIVGNRNLP
                     QALEELHDDAIYFLSGRRYKVKKLIIDEKTERNFADIDKIPLNYPYYTKSIMEEYPEV
                     IEIFEEKEIFGIKLKYCSLNIYKKVLGYSNIEIGKEINQGKKVFFNDSITYTYTTKGF
                     IF"
BASE COUNT          545 a          266 c          210 g          684 t
ORIGIN      
        1 gaaatataaa tccttttgta gtataagtgt aggttataga atcattaaaa aaaacttttt
       61 tcccttgatt aatctccttt ccaatctcaa tatttgaata tcctaatact tttttatata
      121 tatttaaaga acaatacttt aacttaattc caaaaatttc tttttcttca aaaatttcga
      181 ttacttcagg atactcttcc attatagatt ttgtatagta tggatagtta agtggtattt
      241 tatctatatc agcaaaattt ctttctgtct tttcgtcaat tattaatttt ttaactttat
      301 atcttcttcc agaaagaaag taaattgcat catcatgtaa ttcctctaac gcctgtggta
      361 agtttctatt tccaacaatt ttaccattta aaataatatc tacatcattt ccaattcctc
      421 ttatactata attttttagt acattgtgtt tttcgctatt tggtatatat tttccattac
      481 taaagattac taattccttc ctttccaatt tgctaagggt ttctaaataa tcctttgatt
      541 caagttttga tataggtcta tctacacaca tagccagaac ttgattttcc attattacgg
      601 gattaaaagg atctatgtat ggtatttctt cgtcaacaaa atagtctgca ggatgatttt
      661 tataatattg gcttatcgga tcatttccca atgtcaagaa agcatatcct tcttggcctt
      721 tccttgctgc tcttcctaac ctttgtaata gtctatttat aggcaccaga ttagatatta
      781 ctgcatctac atctccaata tctattccca actctaaagt tggagtagaa gaaataacat
      841 ctatcattcc attcttaaaa gaattttcta ccatttttct gtttttgggt agaagaccag
      901 ctctatggat accaattttt attccttgtt ttgatgaagt atatgctatc aattctgcag
      961 ataaatgaga attactaaag accagagttt tgtggttctg ggtaatcttt tttataagtt
     1021 caataaccaa tgatttattt gaccgtagag aaggatataa aatagcgaaa tttgtatcac
     1081 ctttttttcc tataccattc actatttcca tatcacgaga aaataataaa tcacaaaatt
     1141 ctttaacatt tggtaatgta gcagaacaag caattaattg taatttttta ttatttatga
     1201 ttctttctaa tcttttaata atgtaatgga cattagatcc aaaaatccca gtatatgaat
     1261 gaacttcatc tacaactaaa aattccaaag tgttcaacaa ttttataagc tttgtattat
     1321 tcaaaagatg gtaatgtata gaatcaaaat ttgttaatac tatatctgga ggaaattcgt
     1381 agaaattttg cttttcattt gcatttaaat ctccgtcaaa aatttttact acaatatcca
     1441 tattatttga atattccatt atttttgata gttgatctct tgctaatgct tttgtaggat
     1501 atataaaaac agctttgatt tgtctggcat caaacttatt ctgattatag gagaatttaa
     1561 caatattgct atttagttga ttctttaagt catatatctt ttgtaaaatt ggaatgcaga
     1621 aggcttctgt ttttccagaa gccgtcggtg caataattac tgtattttta cctcgaagaa
     1681 tattgaaaat agcttcttct tgaaa
//
LOCUS       DATCMF010000219         1731 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_95530, whole genome shotgun sequence.
ACCESSION   DATCMF010000219 DATCMF010000000
VERSION     DATCMF010000219.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1731)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1731)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1731
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_95530"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(202..801)
                     /locus_tag="VIL14_02735"
     CDS             complement(202..801)
                     /locus_tag="VIL14_02735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522654.1"
                     /translation="MVVVTDSFMGIFTPIDISSRIIQFIEKKIEFPFIKEDEIVGIFY
                     LFGKDNKVTSDLEILSVRNIAKRTMEQQARNIKIFHEFKENKLDSEFIREEYNKRILQ
                     ISIEEQMSSSSSTQSYRIAGDPTIQSNCFEQHIAYYKQDYFYELFKQPFKKTEVPAHL
                     INKLEKRMLMLCYNVSDSSKLPYNNTVYPFFQWLNDSDK"
     gene            complement(925..1461)
                     /locus_tag="VIL14_02740"
     CDS             complement(925..1461)
                     /locus_tag="VIL14_02740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin family protein"
                     /protein_id="HEY8522655.1"
                     /translation="MPIDPDFPKNHQVIGKIQLSDGEHFHYMWGPGKTGEAFENEEVK
                     AAYAARGEEQVPLGVSGTMVAVDWDSCVADGACIEACPVQVFQWYRTEKDVPAKDAPN
                     ETFEGTGSAVKEERKDYTDKADPIREHDCIWCMACVSVCPPQAIKVDQAALEFHEKAE
                     GTYNESISTGGAPPPHAH"
     gene            complement(1622..1726)
                     /locus_tag="VIL14_02745"
     CDS             complement(1622..1726)
                     /locus_tag="VIL14_02745"
                     /inference="COORDINATES: protein motif:HMM:NF013104.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522656.1"
                     /translation="MFKIIDKTIGLKVSDEEEEAGLDITQHAEKAFND"
BASE COUNT          558 a          266 c          246 g          661 t
ORIGIN      
        1 aaaaatgatt aatacaatat gtgtatatat ataattagat gaattttatt gctttttaaa
       61 taaagtagtt ataaaactag cataagaaca ttgtagaaaa atcgcttttt attaattatg
      121 aagatgtaat tgttaatctg aaaaattttt gtttaagtga atcagagtgt atcaaagaaa
      181 aaagatatat cagaaataaa tttatttatc tgaatcattt aaccattgaa aaaatggata
      241 tacggtattg ttataaggta gttttgagga atcagacaca ttataacata acataagcat
      301 tcttttttcc agtttattga ttagatgagc tggaacttct gtttttttaa agggttgttt
      361 aaatagttca taaaaataat cttgtttata atatgcaata tgctgttcaa aacagttgga
      421 ttgaatggtt ggatctcctg ctattctata actctgtgta gaggaagacg aggacatttg
      481 ttcttctatg cttatttgta atattctttt gttatattct tctcttataa actcagaatc
      541 aagtttattt tctttaaatt catgaaagat cttaatgttt ctagcttgtt gttccatagt
      601 cctttttgct atatttctaa cagataatat ttctaaatca ctagttactt tattatcttt
      661 tccaaacaaa taaaatattc caactatctc atcttcctta ataaatggaa attcaatttt
      721 tttttcaata aattgtatta ttctagaaga tatatctatt ggagtaaata ttcccataaa
      781 ggaatcagtt actacaacca ttattatcgt ctaaaataat actttaatat agttattaca
      841 actgatcaat agtaatctga tagattccct aatacccttt aaacgaaact aaagtaattc
      901 attgtattaa ataaaaaaaa agatttagtg agcatgtggt ggtggagcgc ctcctgttga
      961 aattgactca ttgtaggttc cttctgcttt ttcatgaaat tctaatgcag cttgatctac
     1021 tttgattgct tgtggtggac aaactgaaac gcatgccata caccatatac aatcatgttc
     1081 tctgatagga tctgctttat ctgtataatc ttttctttct tcctttactg cagagccagt
     1141 tccttcaaat gtttcgttag gggcatcttt ggcaggaaca tccttttctg ttctatacca
     1201 ttgaaatact tgaactggac aggcttcaat acatgcaccg tctgctacac aagaatccca
     1261 atcaacggct accatggtac cacttacacc taatggaact tgttcttcgc ctcttgcagc
     1321 ataggctgct tttacttctt cattttcgaa tgcttcaccg gttttacctg gtccccacat
     1381 atagtgaaaa tgttcaccat cagaaagttg gattttacca attacttgat gattttttgg
     1441 aaagtctgga tctattggca tttatctcta ttttatccat gaagatatat tatataaatc
     1501 atatgtgaat taaaaacagt ttatttatat atttttaaga atcttgctta ctgctaaact
     1561 aaacatatag gaatatgatc aatttatttt gatttaatta aaaaagaaaa aaatttggaa
     1621 gctagtcatt gaatgctttt tctgcatgct gagttatatc caagcctgct tcttcttcct
     1681 cgtctgatac ttttaggcca atagtcttat ctatgatctt gaaaattgct a
//
LOCUS       DATCMF010000220         1922 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_492932, whole genome shotgun sequence.
ACCESSION   DATCMF010000220 DATCMF010000000
VERSION     DATCMF010000220.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1922)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1922)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1922
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_492932"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..433
                     /locus_tag="VIL14_02750"
     CDS             <1..433
                     /locus_tag="VIL14_02750"
                     /inference="COORDINATES: protein motif:HMM:NF014342.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DHH family phosphoesterase"
                     /protein_id="HEY8522657.1"
                     /translation="KLAHKIANGILWDIEMSEDYTRYETLRDTDKKRVLNDLKIKKIN
                     ELNVVFVRSSPYIQTSLFSEEVFNLTNADAAIFYGKNGKISIRRNNDKIDCNAIALNL
                     IDGGGHKFAAGGTIRSDPNKLDDIISEVEQIIHKLKGSIHH"
     gene            483..1112
                     /locus_tag="VIL14_02755"
     CDS             483..1112
                     /locus_tag="VIL14_02755"
                     /EC_number="2.7.7.87"
                     /inference="COORDINATES: protein motif:HMM:TIGR00057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0061710 - L-threonylcarbamoyladenylate
                     synthase [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonylcarbamoyladenylate synthase"
                     /protein_id="HEY8522658.1"
                     /translation="MIILDGKKEEDLIKCKELIMKGGIIVYPTDTIYGLGCDPYNKKS
                     VEKIFRLKNRLMTKALPILTCDFRHVEKIMILNENGRKLANSFWPGPLTIVGTLKDNE
                     LPEIITGGKQTIGIRIPNNIETLNLLKYCNYLVGTSANISNEKSCFYAKEVMKSPLAG
                     YDAIVIGDEKKPKHQFSLKGSTIVDVSTSNIKIVREGIIKSETIYEILY"
     gene            1121..1669
                     /locus_tag="VIL14_02760"
     CDS             1121..1669
                     /locus_tag="VIL14_02760"
                     /inference="COORDINATES: protein motif:HMM:NF014923.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="THUMP domain-containing protein"
                     /protein_id="HEY8522659.1"
                     /translation="MNFNLLVTTYRHREYDAVDELNVILQRFNIDVEMIEIQNVSGII
                     LALANLNPFELITKFKELLTEEPWQFRYILRVIPIERALYTDLKNIEREVENLTMKKI
                     EVNDSFRISVEKRHTSTRSKEIISSIANKLQNKVSLKNPDWIILIEIIGNKTGISILK
                     ERDIFNSIMEKRKTGYLLESSG"
BASE COUNT          796 a          222 c          310 g          594 t
ORIGIN      
        1 aaaacttgct cataagatag caaacggaat attatgggat atagagatga gtgaggatta
       61 tacaagatat gaaacgttga gagatacaga taaaaagcga gtattaaatg acttaaaaat
      121 aaagaaaata aatgagttga atgtcgtatt tgttagatca tcaccatata tccaaacaag
      181 cttattttca gaagaggtat ttaacctgac caatgcagac gccgctatat tttacggaaa
      241 aaatggtaaa ataagcatta gaagaaataa tgacaaaatt gattgtaatg cgattgcttt
      301 aaatttaatt gatggaggag gtcataaatt tgctgcagga ggtacaatac gaagtgatcc
      361 aaataagtta gacgacatta tttcagaagt tgaacaaata attcataaat taaaaggatc
      421 tattcatcat taaattatat aattaaagtt tcattaaata ttcagataaa actggaaata
      481 acatgataat actagatggt aaaaaggaag aggacttgat caaatgtaaa gagttaatta
      541 tgaaaggagg aataattgta tatcctacag ataccatata tggtttaggt tgtgatccct
      601 ataacaaaaa atcagtggaa aaaattttta gattgaaaaa tcgtttaatg actaaagctc
      661 tacctattct cacttgtgac tttaggcatg tagaaaaaat aatgatttta aatgaaaatg
      721 gaagaaaatt agctaattct ttttggcccg gtcctttaac aatcgtagga actttaaaag
      781 ataatgaact tccagaaata attacaggtg gtaaacaaac aattggtatc agaatcccta
      841 ataacataga aacgttaaat ttgttaaaat attgtaacta tttagttggt acaagtgcta
      901 atatctcaaa cgaaaaatca tgtttttatg ctaaggaagt aatgaaatct ccactggctg
      961 gatatgatgc aatagtgatt ggagacgaga agaaacctaa gcatcaattt tctttaaaag
     1021 gttcaacgat cgttgatgtg tctacttcca atatcaagat agtgagagag ggaatcataa
     1081 aatcggaaac tatttacgaa attttatatt aataaaaata atgaatttta atttattagt
     1141 tactacttat agacatagag agtatgatgc agttgatgaa ttaaatgtaa tacttcaacg
     1201 atttaatatt gatgtggaaa tgatagaaat ccaaaatgtt tcaggtataa ttcttgcatt
     1261 agctaattta aatccatttg aattaataac aaaattcaag gaattactga cagaagaacc
     1321 atggcaattt agatatatac taagagtgat acccatcgag agagctctct atacagatct
     1381 taaaaatatt gaaagagaag tagaaaacct tacaatgaag aaaatagaag taaatgattc
     1441 atttagaatc tcagtagaaa aaagacatac atcaacaaga agtaaagaga ttatatcatc
     1501 tattgcaaat aaacttcaga ataaagtttc attaaagaat ccggattgga ttatattaat
     1561 tgaaattatt ggtaataaaa ctggaatttc aatattgaag gaacgagata tttttaattc
     1621 aataatggaa aaaagaaaga caggatattt attagaatca tcaggctaat tgtcaagaat
     1681 tactactaac attaatataa ataaaataat atgtgaacgt aaaagtttca ttctagattt
     1741 gaatccgtct gttctaaata tattaaaaaa atatttatta aataactctt attctctttt
     1801 aatttatgcc tagcaaaaat catttttttg gcaaagatat agtttccatc agagattttt
     1861 cgagagatga tctagaattt atattcgatt ccactgatac aattcagaaa ttaaaacctg
     1921 aa
//
LOCUS       DATCMF010000221         2214 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_179156, whole genome shotgun sequence.
ACCESSION   DATCMF010000221 DATCMF010000000
VERSION     DATCMF010000221.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2214)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2214)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2214
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_179156"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(54..383)
                     /locus_tag="VIL14_02765"
                     /pseudo
     CDS             complement(54..383)
                     /locus_tag="VIL14_02765"
                     /inference="COORDINATES: protein motif:HMM:NF019013.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_process: GO:0030638 - polyketide metabolic process
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ester cyclase"
     gene            complement(405..584)
                     /locus_tag="VIL14_02770"
     CDS             complement(405..584)
                     /locus_tag="VIL14_02770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522660.1"
                     /translation="MKFALTLFISDVLVTDVSPEENIKIVGRAIEAFNTGNTSDVHLF
                     IGPDYIDRESQSHKD"
     gene            799..993
                     /locus_tag="VIL14_02775"
     CDS             799..993
                     /locus_tag="VIL14_02775"
                     /inference="COORDINATES: protein motif:HMM:NF018096.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1059 domain-containing protein"
                     /protein_id="HEY8522661.1"
                     /translation="MTLSLNCKDAGDPDCTHTMTGETEEELLASAKKHGMEVYGYSEE
                     KWNEEISKNKDHFRSLIKKT"
     gene            1080..1508
                     /locus_tag="VIL14_02780"
     CDS             1080..1508
                     /locus_tag="VIL14_02780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522662.1"
                     /translation="MSIIETKKVMAGIFLTLFAAGFINPIQGETGKGTDVFRVTMTIF
                     GVEKSVGDIVAIVAVNNGQDSKVKLLDSEGSYVIPGNSTGGGGIIEYVATFPNVTVTA
                     GSEYKACVLTTRDIEPICETGTNSPASRPEFVDLTLNIPT"
     gene            1691..1870
                     /locus_tag="VIL14_02785"
     CDS             1691..1870
                     /locus_tag="VIL14_02785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522663.1"
                     /translation="MEKNQFVDIAKLEEIPPGKMKHAETDGNEILVANVEGNSMLYVT
                     DVATTCSTFNGSSQR"
     gene            1851..2087
                     /locus_tag="VIL14_02790"
     CDS             1851..2087
                     /locus_tag="VIL14_02790"
                     /inference="COORDINATES: protein motif:HMM:NF012575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske 2Fe-2S domain-containing protein"
                     /protein_id="HEY8522664.1"
                     /translation="MGHLKDNIITCPMHGARFDIKTGKKVSDPIMSSLEINTLPSNLQ
                     KYMQYASQFMSRIKTYDQKKYEVKVEGNSVKVKI"
BASE COUNT          758 a          384 c          391 g          681 t
ORIGIN      
        1 agtatttctt ttataggagt ttatttttgc aatattgata tgaaagaaga tgactatcct
       61 acacccttcc attctttgaa gaatgcctga tactcagatg aagtagcttt taccagccct
      121 aactgataca tgaatttaag atcatccctt attgctctat gctctactat tttatcatcg
      181 tcacctatcg tatgtatgtg tacggcttca taagagattt tatttcctgt gggaggaata
      241 aagaaaagat tacctgtatg tgtccccgtt acatttccca cgaaaactac cttattacct
      301 tgggagacaa tttccagttc ttcatagtga agatcctgaa atgcactgcg taaattcttg
      361 atagtatcta caaactcttc tggtccttta agttttgatc tgtactaatc cttatgtgat
      421 tgtgattctc tgtcaatata atctggacct atgaatagat ggacatcact agtattcccg
      481 gtattgaaag cctcaatagc acgtccaaca atttttatat tctcttctgg agacacatct
      541 gttaccagta catctgagat aaaaagagtt aatgcaaatt tcaacttatt tctaacgaga
      601 taagaacatc actaagagta aatgaatgaa tgtacatata acatcagtag ccatggacta
      661 ttaatgctta gaatattatc aataatttcg ccttagtatt ttctaattgt tagatacttt
      721 cccactatgt aattacataa ttgtctgtat attccccatt caaagatata tagttccccc
      781 tgcattaatg attaaagaat gactttatca ttaaattgta aggatgcagg agatccagat
      841 tgtacccata caatgactgg tgaaacagaa gaagaactac tcgctagtgc gaaaaagcat
      901 ggcatggaag tctacggtta ttcagaggag aagtggaatg aagagatttc aaaaaacaag
      961 gaccacttta gaagtcttat aaagaaaaca taaacatata acctcaactt tcttatcatg
     1021 gctattttgg gcatcgtcat cggacatatt ttaattagat gcgtgcaata gtatagacaa
     1081 tgtcaattat tgaaaccaag aaagtgatgg caggaatatt tctaactttg tttgctgccg
     1141 gtttcataaa tccaattcag ggagaaacag gaaagggaac agacgtcttt agagtaacta
     1201 tgacaatatt cggagtagaa aagtccgtag gtgatatagt agcaatcgtt gccgtaaata
     1261 atggacaaga ctcaaaagtg aaactcttgg attcagaagg gtcttatgta attccaggaa
     1321 actccactgg aggaggcggc attatagagt atgttgcaac atttccaaat gttacagtaa
     1381 ctgcaggtag cgagtataag gcctgtgtat tgacaactag agatatagaa ccaatatgtg
     1441 aaactggtac caactcacct gcttcaagac cagagtttgt agatttaaca ttaaatatac
     1501 ctacataagc gtctggactg ctaatgccag aagtaatgat attacaatta ggtaatttca
     1561 ttagatatat ctgacttctt aatcaaggat agattttcaa gattaacttc tatcttggcg
     1621 tagttagtag gactaagtta gtaatatatt actaccataa ctttatagtt caattacgta
     1681 gcctacccca atggaaaaaa atcaatttgt agacatcgca aagctagagg aaattccacc
     1741 tggaaaaatg aaacatgcgg agactgacgg aaatgaaatt ctagttgcaa atgtagaagg
     1801 aaattctatg ctttatgtga cagatgtagc cacaacatgt tccactttca atgggtcatc
     1861 tcaaagataa catcataaca tgtcctatgc atggagcaag atttgatatt aagacaggaa
     1921 agaaggtgtc agatccgatt atgtcctcac tagaaattaa taccttacca tcaaatttgc
     1981 agaaatatat gcagtatgca agtcaattta tgtcccgtat taaaacatac gatcaaaaaa
     2041 aatacgaagt gaaagttgaa ggcaatagtg ttaaggtgaa gatctagcct ctttcaagtc
     2101 tcccaactcc atttttcttt ctcactttat ccatatagtt ggttctttag atatgataag
     2161 atgacaacaa caacggcagc aataattcat tattacaatt aagcatactt agat
//
LOCUS       DATCMF010000222         2931 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_493161, whole genome shotgun sequence.
ACCESSION   DATCMF010000222 DATCMF010000000
VERSION     DATCMF010000222.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2931)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2931)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2931
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_493161"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..397
                     /locus_tag="VIL14_02795"
     CDS             <1..397
                     /locus_tag="VIL14_02795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522665.1"
                     /translation="NGPETFSPDRIFQVSFLSPSNKVLSDMVFVWFNIEKIKDSVSLD
                     DRKNILLKNLNNSSIDVKVQSTKLSGIDAFMIDYTNIAIELQRNIGIEAIRDGLLYSL
                     DFTARPDTFEKNLDSIETMIKSTNISSIA"
     gene            781..1143
                     /locus_tag="VIL14_02800"
     CDS             781..1143
                     /locus_tag="VIL14_02800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522666.1"
                     /translation="MIINFSGDIDLANNIYNYFISNSIINEKIEIKIEEDNLVISIFN
                     GQDKKAIKKIRSLLQEYLDSFKIYKNHQIIELENVITVGIPKDITEISNLVFCEICGY
                     GMSSEEELLVHRRSHGIF"
     gene            complement(1273..>2931)
                     /locus_tag="VIL14_02805"
     CDS             complement(1273..>2931)
                     /locus_tag="VIL14_02805"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA ligase"
                     /protein_id="HEY8522667.1"
                     /translation="ETSLSIAVLFLSGRALPIGSTRTLNIGFTTIMESLSEIAMLDIK
                     DIHNIHLKHGDIGAMAEYAVSKKHIISLFNQQERISLSYVYHQFKKIANISGSGSNKN
                     KKNILKGLLIACSPLESKYLIKIITGEMRIGSVEGLVEIALSRAFDRELQYIREAMLI
                     SGDISQVAVLAKKNILHNAIMRPFVPVSFMLADVMFSAEEIINYYNKPLICEYKYDGI
                     RLQMHKFDNIVRLFSRNLVDITYAFPELVKAATESTIRTPDTTTIHNQVDFILDGELI
                     ALKNDRPLHFQELQKRLRRKNVTDDITTEIPIYYIVYDIMYFKDNQVLKKSLLDRKNI
                     LSTISFKKPIINSSYKILDSIEQIIAIFNESKDIGHEGLVVKDPLSQYHPGKRGRYWM
                     KLKKELDTIDAVIVIAEYGHGKRAGVLSDYTFAVIDEEEDNDDNDKNLNNNNNNYLEN
                     SRLKTIGKAYSGLTDKEIDEMTERLREIIIEDNGNRILVKPEIVLEVAFDTIQKSDRH
                     NSGFALRFPRIKNIRTDKSLKDIDTLEKVRQIYKNQVYVKHKEI"
BASE COUNT         1017 a          436 c          389 g         1089 t
ORIGIN      
        1 aaatgggcca gaaacctttt cacctgatcg aatcttccaa gttagttttc tttctccatc
       61 caataaagta ctatcagata tggtttttgt ctggttcaac attgaaaaaa ttaaagattc
      121 cgttagttta gatgatagaa agaatatttt gctaaaaaat ttgaataact catctattga
      181 tgtaaaagta caatcaacta aattgtcagg aattgatgct tttatgattg attatacaaa
      241 tatagcaata gagttgcaaa gaaatattgg aattgaagca ataagggatg ggctattata
      301 tagcttagat tttactgccc gacctgatac ctttgaaaaa aatttagatt ctattgaaac
      361 aatgataaaa tctacaaata ttagctccat tgcataaggt caaggataaa ctgtattgaa
      421 agaaaaggac atctcaatag ttttcaatat ggaaaagtat tggcaaccaa ccaaaaaaag
      481 aagtatccaa ataatatact taactttact tataatatta atatcctatc gataaattta
      541 gaattacttg ataagataaa aaatctgaag aaagatcaga ggttaaagtc attacaatgt
      601 taaaattata tatgcacctg caataataat attttatcgc aaatgacgaa tgttatgtct
      661 gtaaaaagaa gtaaaataat tctcttttaa aatataattt aatctgtttg ttgaatcctt
      721 ttattattga tgagtttata atagcaattc gttataaatt agtgggagaa tcaaaatatt
      781 ttgatcataa atttttcagg agatattgac ctagcaaata atatatacaa ttattttatt
      841 tccaattcaa taataaatga aaaaatagaa attaaaatcg aagaagataa cctagtaata
      901 tccatattta atggacaaga taaaaaagca attaaaaaaa taaggtcatt attacaagag
      961 tatctagact cttttaaaat ctataaaaac caccaaatta ttgaacttga aaatgtcatt
     1021 accgttggaa ttccaaaaga tataactgaa atctcaaatc ttgttttctg tgaaatttgt
     1081 ggttatggaa tgtcgagtga agaagaatta ttagttcata gaagaagtca tggaatattt
     1141 tagatttaca attacaaaga atatataatt ataataaaat aaacaatact tttgactatc
     1201 caggatagaa acaatttgtt aaataattag ggcataatta gaattattac tataatatac
     1261 gaaatttact catcaaattt ccttatgctt tacatatact tggtttttat aaatctgcct
     1321 gactttttct aacgtatcta tgtcctttag gctcttgtca gtacgaatat tttttatcct
     1381 tggaaatcgt aatgcaaatc cactattatg cctgtcactt ttttgtatgg tatcaaatgc
     1441 tacttctaaa actatttcag gctttactaa aattctatta ccattatctt ctattatgat
     1501 ttctcttaat ctttcggtca tttcgtctat ctctttatca gtcaacccag aatatgcttt
     1561 tccgattgtt ttaagcctac tattttcaag ataattatta ttgttgttat tcaaattctt
     1621 atcattatca tcattatcct cctcttcatc tataactgca aatgtataat ccgataatac
     1681 tccagctctt tttccatgac catattccgc aatcacgatt accgcatcaa ttgtatctaa
     1741 ttccttcttt aacttcatcc agtatctgcc tctttttcct ggatggtatt gagatagtgg
     1801 atcctttact actaatcctt catgtccaat atctttactt tcattaaata ttgcaattat
     1861 ttgttctatt gagtccaaaa ttttataact tgaattgatt attggttttt taaaagagat
     1921 tgttgataaa atattttttc tatccaaaag tgatttcttc agtacttgat tgtccttaaa
     1981 atacattata tcataaacta tgtagtatat aggaatttca gtagtaatat catcagtaac
     2041 gttttttctt ctaagtcgtt tctgaagctc ttggaaatgt aatggtctat cgtttttaag
     2101 ggctattagt tctccatcta aaataaagtc tacctgatta tgtattgttg ttgtatctgg
     2161 agttcttatt gtagattctg ttgcagcttt tactaattcg ggaaatgcat atgttatatc
     2221 tacaagattg cgagagaaaa gccgtactat attatcaaac ttatgcattt gtaaccttat
     2281 tccatcatat ttatattcgc aaatcaaagg tttattgtaa tagtttatta tctcttctgc
     2341 actaaacata acatctgcta acataaaact tactggaaca aatggcctca ttattgcatt
     2401 gtgaagaata tttttttttg ctaaaactgc tacttgtgat atatcccctg aaataagcat
     2461 cgcttctctt atatattgta attctctatc aaatgctcga gatagagcaa tctccacgag
     2521 accttcaact gaaccaattc gcatttcacc agtaataatt ttaataagat actttgattc
     2581 aagaggagaa caagcaataa gcaatccttt taatatgttt tttttatttt tatttgaacc
     2641 agaaccactt atgtttgcta tctttttaaa ttgatgatac acgtaactta atgatattct
     2701 ttcttgttga ttaaaaagag atataatatg ttttttagat actgcatatt ctgccattgc
     2761 acctatatct ccatgtttta gatggatatt atgaatatct ttaatatcta acattgcaat
     2821 ttcagaaaga gattccataa tagtagtgaa tcctatattg agtgtccttg ttgagcctat
     2881 aggcaaggcc cttcctgata ggaataaaac tgcaatagat aaggaggttt c
//
LOCUS       DATCMF010000223         3545 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_493272, whole genome shotgun sequence.
ACCESSION   DATCMF010000223 DATCMF010000000
VERSION     DATCMF010000223.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3545)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3545)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3545
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_493272"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..226
                     /locus_tag="VIL14_02810"
     CDS             <1..226
                     /locus_tag="VIL14_02810"
                     /inference="COORDINATES: protein motif:HMM:NF013507.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="kelch repeat-containing protein"
                     /protein_id="HEY8522668.1"
                     /translation="NTIYVFGGEDVTKTYNNNEKYDVKDKQWESKEPLPTARHGLSAV
                     SGNDKIYIIGGGPEPGLSVTNVNEIFNARE"
     gene            1116..2117
                     /locus_tag="VIL14_02815"
     CDS             1116..2117
                     /locus_tag="VIL14_02815"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEY8522669.1"
                     /translation="MIKTSNRKEFSSAFIIPYYADGYEIEHGRKKLFIAETIEGLFSQ
                     TDDDWCAIVIVDMTPNEETHDYLIHLKQKYYPKIDVIFLERNVGAGVSRNVGVLKALE
                     RGHSIILFNDSDDISHPKRLEVVKKILSENPHIDVVYSTFEVIDENNRLTPTEKISSP
                     ILEILESHLQNPLEGKDIWIKMGTETGITNITSSTAVRIKFAYQCPFPNEKASEDFHS
                     WMRMSAFGANFKYTSLIPTKYRIPSFIKSQASRARIGVNNFNQIKARVDSDGFSKATE
                     IALGRNIIKPEEIPMLKSKFYKRLAKSMKREMENELADEFLHKAAQLEYESFVYLNK"
     gene            complement(2566..>3545)
                     /locus_tag="VIL14_02820"
     CDS             complement(2566..>3545)
                     /locus_tag="VIL14_02820"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY8522670.1"
                     /translation="SKGSSVSEGGEEEERLPSNLNIIETIEPSWEGTVAEEAHYLMYK
                     ELLENEYGSGNGIVWDNTWHGFSYLSAKKFPKMKIIHTHHGIVEWQKVPVKQLQFPRY
                     IGLSRLHAKYMSSILKIPVRYVHHGIPLPSIEETKNNNNNKNGDYLLSINRIVREKGI
                     EDSIDLAVRTRNAIKIAGDDIHVPDLSYVQMIREKCQNTDGLAEYFGLVDNKTKTELI
                     KNCKAVIACPKPTWMEAFGLYAVEANAYGKPVLALANGGLNDIIVNQTNGFLAKTPRE
                     LQEYVEKVYECSPESCRRRVEKLFTDEIMTKNYLQIFEGVMEDEPAFRW"
BASE COUNT         1196 a          572 c          545 g         1232 t
ORIGIN      
        1 taatactatc tatgtatttg gaggagaaga tgttactaaa acatataaca ataatgaaaa
       61 atatgatgtt aaagataagc aatgggaatc caaagagcct ctacctactg ctcgtcatgg
      121 attgtcagca gtgtctggta atgataaaat atatataatc ggaggaggac ctgaacctgg
      181 attgagcgtg actaatgtta atgaaatttt caatgctaga gaataaaaat ctttttgtac
      241 tttctaataa tatgattatg tgaaaaggta atccttgaaa aggagtaatc ctgttattag
      301 gtcaaacatt gattaatata ataaattctt attactatac ttttatcatt caaactggta
      361 tctcgattct cggtataggc ataaatttgt ctatagttca aaatgattct cattctaacg
      421 acaatgattc tgtacaaata gattgaaaat caaatgaagt atcaacatcg atacatatca
      481 cataaccatc aataaaagag aaattggata ataaaaaata gaggaaaagt tagacaacta
      541 caaaaatata tataatattt ctatcttgaa ttaatacttt ataactttta aaatcagatt
      601 aataaatatc tatttaagaa attaaatgga ataaatacca agaatcagat atccattata
      661 tgccatactc gaagccctca ccattcatat cattacgatt tgattagaat ttagtttgta
      721 ttacaatctt acaaatttaa ttatttagta ggaagtctcc atttttatgt tgtatgatct
      781 ttatttattt tttatttaaa agttaaagcc aataaccgac tactattgaa ggataaatcc
      841 aataatagaa ggctatgatg aatcaattct gttttttctt tggactgtat tcacctttat
      901 gatacatatg ttatttaatc cttcttttgg ataaattcat attttattat tattgttgat
      961 aattgtaagc catagtcctc ctccttctcc tcctctatat tatcgagtga aaaaattaga
     1021 gaactaatat cttaatgtac ctaaatctac aaacgtcgaa aggttaaatt aaattaatta
     1081 attggtaacc tggataacat actaaagaga ttaaaatgat aaaaacaagc aatagaaaag
     1141 agttttcaag tgcatttatt attccatatt atgcagatgg atatgaaata gaacacggta
     1201 gaaaaaagct atttattgct gagacaatag aaggattatt ttcacaaacc gatgacgatt
     1261 ggtgtgcaat tgttatagtt gatatgactc ctaatgaaga aacccatgat tatttaattc
     1321 atttaaagca aaaatactat ccaaaaattg atgtcatttt tctagaacga aatgttggtg
     1381 ctggagtaag cagaaatgta ggagtcctca aggcattaga acgtggtcat tctataatac
     1441 ttttcaatga ctcagatgat atatctcatc caaaaaggtt agaagttgtt aaaaaaatat
     1501 tatcagagaa tcctcatatt gatgtagttt attctacgtt tgaggtaatc gatgaaaata
     1561 atagattaac accgaccgaa aaaatttctt caccgatttt agaaatctta gaatctcatt
     1621 tgcaaaatcc attagaaggc aaagatattt ggataaaaat gggaacagaa actgggatta
     1681 ctaatataac ctcttctaca gcagtacgta taaaatttgc atatcaatgt cctttcccta
     1741 atgaaaaagc atcagaagat tttcattctt ggatgagaat gtcagctttt ggagccaact
     1801 ttaagtatac ttccttaatc cctactaaat acagaatacc aagttttata aaatctcaag
     1861 cttcaagggc aagaataggg gtaaataatt ttaatcaaat aaaagcaaga gtagatagcg
     1921 atggtttttc taaagctact gaaatcgcgc taggaagaaa tatcataaag cctgaggaaa
     1981 taccaatgct taaatcaaaa ttctataaaa gattggccaa atctatgaaa cgagaaatgg
     2041 aaaatgaact agctgatgag ttcttacata aagccgcaca actggaatac gaaagctttg
     2101 tttaccttaa caaatagttt gtgttgcaat tataactatg caatcatata gataagacac
     2161 atacaatctt ctgctttttc atgtatctaa ttattttaaa ttcatcctag ttatttacat
     2221 aggtcatatc aataatggtg ttaaactttt ttttgaaatg cttaatatcg aagtctagat
     2281 ctctttctta acttgtgttg aaactcttgc tgaattgaaa gtataattta ataactcaga
     2341 tagttctttt tttgtgtata gacaaccata ttttccattg tttactccta cttctaatgt
     2401 cctcttgatg cattactatg ggtagataac ctgctgccat ggcctctaca gtagcaattc
     2461 caaatgttcg tttggtcgcg ggtgcatatt ttcagttttt ataatcaatc tataatggat
     2521 aggatagtca aggcatagcg ttagtaaaac aattacctac ttttactacc atctgaatgc
     2581 aggctcatct tccattaccc cttcgaagat ctgaagataa tttttagtca ttatttcatc
     2641 tgtaaagagc ttttcaactc tgcgtctaca agattctggc gaacattcgt aaaccttctc
     2701 gacatattct tgtaattctc taggagtttt agctagaaaa ccattggttt ggtttacaat
     2761 tatatcgttt agtcctccat tagcaagagc aagtactggt ttaccatagg catttgcttc
     2821 tacagcatat agtccaaagg cctccatcca ggtaggtttt gggcatgcaa taacagcttt
     2881 acaattcttg attaattctg tctttgtttt attgtctacg agtccaaagt actctgccaa
     2941 gccatcggta ttttggcatt tctctcttat catttgtaca tatgaaaggt ccggtacgtg
     3001 tatatcatca ccagctattt ttatagcgtt tcttgttctc acagctaaat ctattgaatc
     3061 ttcaattcct ttttctctga ctattctatt tatagagaga agataatctc catttttatt
     3121 gttattatta ttttttgttt cttctattga aggtagaggg attccgtgat gcacatatct
     3181 aactggtatt ttaaggattg acgacatata tttagcatga agcctcgata gtccaatata
     3241 cctaggaaat tgcagctgtt taaccggaac tttttgccac tctactatac catgatgggt
     3301 atgaattatt ttcatctttg gaaatttctt tgcagagaga taagaaaagc catgccatgt
     3361 attatcccat actattccat tcccacttcc gtattcattt tccagtagtt ccttgtacat
     3421 gagatagtgt gcttcttcag caaccgttcc ttcccaagaa ggttctatcg tttctattat
     3481 gtttaagttg gatggcagtc gttcttcttc ttctcctcct tcacttacag aagaaccttt
     3541 agatg
//
LOCUS       DATCMF010000224         1790 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_179521, whole genome shotgun sequence.
ACCESSION   DATCMF010000224 DATCMF010000000
VERSION     DATCMF010000224.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1790)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1790)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1790
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_179521"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(110..1183)
                     /locus_tag="VIL14_02825"
     CDS             complement(110..1183)
                     /locus_tag="VIL14_02825"
                     /inference="COORDINATES: protein motif:HMM:NF014010.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoU domain-containing protein"
                     /protein_id="HEY8522671.1"
                     /translation="MDGNEVRKIQFTGKSTFVLSLPKKWVNELNLKAGDPVTIIREPN
                     NTLSIISDITRSSIESVDEATVQVLKDEGANSLKRKIVSMYLAGYNIINLKSKFGRIN
                     PVQREGAREVVRRNLVGTEIIADSSDLITIQVLITLPELSVNTAVRRMFLLATSMHRD
                     AMIALSELNSELANAIIRSDDEVDRFSLYILRNLVLATKNERILNDVGLKKTSDCLSY
                     RLAVKSIERIADHASKFAEKSLSIKEKIPDDILDKIKKMSDLSLQDLNDSVEAFLRRD
                     YLMADKIVDRKENVQILEDTIVSLLDNTDNGEFNKYKIFIKLLLEDLRRTAEHASDIA
                     EEALNQTIGEVITIEKRPLHYRT"
     gene            complement(1316..>1790)
                     /locus_tag="VIL14_02830"
     CDS             complement(1316..>1790)
                     /locus_tag="VIL14_02830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HEY8522672.1"
                     /translation="VISIGSFSVIAGAFSLSLIMIPIVTRITEESLKMVPDSLREAGH
                     SLGAPKWKITIFIVLKTATSGVITGIVLSIARIAGETAPLIMTILGTSLYFSSLTGPV
                     DAIPLRIWRLASLPYESAHANGWGAAMILILLILGLNVGLRVLTRRQNIATSRDT"
BASE COUNT          591 a          304 c          264 g          631 t
ORIGIN      
        1 agtatttata gtgaggaatt tttaaaggag caagcgagga aacgccccag aagaagatta
       61 agttaaaagg atcgttattc tgtaacaaca tttgttttaa ataatcaagt tatgtcctat
      121 agtgtaaagg tcttttttct atagtaataa cttcgcctat tgtttgattt aaagcttctt
      181 ctgctatatc acttgcatgt tctgcagtac gccttagatc ttcaagtaaa agttttatga
      241 aaattttata tttattaaat tccccattat cagtgttatc taataaagat acgatagtat
      301 cttcaagaat ttgtacattt tcttttctat ctactatttt atctgccatt aaataatccc
      361 ttctcaaaaa agcttcgact gaatcgttta gatcttgcaa agacaaatca ctcatttttt
      421 taattttatc cagaatatca tcaggaatct tttctttaat tgaaagagat ttttccgcaa
      481 atttggaagc atgatctgcg attctttcga tactttttac tgccagtcta taacttaaac
      541 aatcagaagt tttttttaat ccaacgtcat ttaatatcct ttcatttttt gttgcaagga
      601 ctagatttct tagtatataa agactaaatc gatcaacttc atcatcagat ctaatgatag
      661 cattagctaa ttcagaattt aattcagata atgctatcat tgcatctcta tgcattgaag
      721 tggcaaggag aaacatcctt ctaacagcag tattcaccga aagttcggga agtgtaatca
      781 atacttgaat agttatcaaa tcagatgaat cagcaattat ttctgtgcca acaagatttc
      841 tacgaacgac ttctcttgca ccttcacgtt gtacaggatt aattcttcca aatttagatt
      901 taagatttat tatattatat ccagcaagat acattgaaac tatttttcgc ttaagagaat
      961 tagcaccttc atcttttaat acttgtaccg ttgcttcatc aactgattca attgaggatc
     1021 ttgtaatgtc ggatattata gataaagtat tatttggctc acgaataatg gttacagggt
     1081 cgccagcctt taaatttaat tcatttaccc attttttagg taaggataat acgaatgttg
     1141 atttacctgt aaactgtatt ttccttactt cattgccatc catatatgta gccaacaatg
     1201 taataaatag taataataca tgtatagttt atggttattt agaatgtggg tatataggtt
     1261 tctatatagt atatatagat aactaaagat ataatagatc ttaaaatata attcattagg
     1321 tatctctcga agtagctata ttctgtctac gtgttagcac tcgtaaacca acatttaatc
     1381 ctaaaataag aagaatcaat atcatagcag caccccaccc attagcatga gcagattcat
     1441 aaggtagaga tgccaaccgc catattctta atggaatcgc atccacaggt ccagtaagtg
     1501 atgaaaagta caaacttgtt cctagtatag tcataattaa tggagcagtt tctcccgcaa
     1561 ttcttgctat agataatact attccagtta taactccact agttgctgtc tttagtacta
     1621 taaatatagt aattttccat ttgggggctc ccagtgaatg acccgcctct ctaagagaat
     1681 ctggcaccat tttaaggctt tcttcagtta ttcgagtaac aattggaatc attattaaag
     1741 ataatgaaaa ggctcctgct ataacagaaa aagaaccaat agaaataact
//
LOCUS       DATCMF010000225         1921 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_493942, whole genome shotgun sequence.
ACCESSION   DATCMF010000225 DATCMF010000000
VERSION     DATCMF010000225.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1921)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1921)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1921
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_493942"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(55..564)
                     /locus_tag="VIL14_02835"
     CDS             complement(55..564)
                     /locus_tag="VIL14_02835"
                     /inference="COORDINATES: protein motif:HMM:NF012241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20/alpha crystallin family protein"
                     /protein_id="HEY8522673.1"
                     /translation="MATSQGSRKNKEIERKETMVRRPFDELFDNFRQEMEDVFFTPFI
                     TPLRSAGIPRGIQSIETRTPLCDIIDKGDRFAVSLEVPGIQKDKIEVKATNEYITISG
                     IEEEKTEKEEGNYVLNERTYRSFSRRIPFSENIIPTKVDATIENGILKIEVPKQKPTS
                     TEETHIKIK"
     gene            736..>1921
                     /gene="thsB"
                     /locus_tag="VIL14_02840"
     CDS             736..>1921
                     /gene="thsB"
                     /locus_tag="VIL14_02840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0140662 - ATP-dependent protein folding
                     chaperone [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thermosome subunit beta"
                     /protein_id="HEY8522674.1"
                     /translation="MVSSQVPILLLKEGSTETKDKDAQQNNITAAKLVTQMVKTSLGP
                     RGMDKMLVDTLGDVTITNDGATILKEIDVEHPAAKIMVEISKSVDNEVGDGTTSVVLL
                     AGSLLEKAEELINKKVHPTVIVDGFRKSAEKAIELLKEIAEKIDPQDKEYLKKIATTS
                     MSSKLTSTNSPELSNIVINAVLSILEKYDEYNKKFKVDVDNIKVEKKPGGSIGDTKLI
                     NGIVLDKEVVHGGMPKRVENAKIVLLNCPLEIEKTEFDAKININNPEQIQQFINEENM
                     MLKAMVDKISITEANVVLCQKGIDEMAQHYLAKSGILSVRRIKESDMFKLSKATGARL
                     ITNLDDLTQEDLGHANLVEERHIESDKWVFVEECKNPKSVTILVRGGSQRVIDEVERS
                     IHD"
BASE COUNT          691 a          260 c          341 g          629 t
ORIGIN      
        1 aaatggattt ataatatgaa ataagctaaa aaataaagaa atctattgtc tttattattt
       61 gatttttata tgtgtttctt cagtagaagt aggtttttgc ttaggtacct caatttttaa
      121 aataccattt tctattgtag catccacttt agtaggtata atattttctg aaaatggtat
      181 cctacgagag aaagacctat atgttctttc atttagtaca taattacctt cttccttttc
      241 agttttttct tcttctattc ccgaaattgt aatgtattca tttgttgctt taacttctat
      301 tttgtctttt tgtataccag gaacttctaa agaaactgca aatctatcac ctttatctat
      361 aatatcacat aaaggggtgc gtgtttcaat tgattgtata cctcgtggta ttccagcgga
      421 tcgtagagga gtgataaaag gagtaaaaaa aacatcttcc atctcttgcc taaagttatc
      481 gaaaagctca tcgaatggtc ttctaaccat cgtttctttt ctttctattt ctttattttt
      541 tcgagatcct tgggatgttg ccatatgcaa tctccattta taattaatca aatatattat
      601 ttatatgtta ctcacaagat gtgtttatta ccatgatctg taattctctt tgacattaat
      661 aatatatgtt gtgctttttt gaagtaaaat ttataataga catgatcata taatgtgtgt
      721 aacaagaggt gtaatatggt gtcatctcaa gttcccattt tattattgaa agaaggaagt
      781 actgaaacaa aggataagga tgcacaacaa aataatatta cggcagccaa acttgtaaca
      841 caaatggtca aaacaagtct aggtccaagg ggcatggaca agatgttggt agacacatta
      901 ggtgacgtta ctataacaaa tgatggagcc actattctta aagaaataga tgttgaacat
      961 cctgctgcta aaatcatggt tgaaatttct aaaagcgttg ataatgaagt tggtgatggt
     1021 actacatcag ttgttctttt agcaggttca cttttggaaa aggcggaaga attgataaac
     1081 aaaaaagtcc atcctactgt aattgtagat gggtttagaa aaagtgcgga aaaggcaatt
     1141 gaattattaa aagaaattgc agagaagata gatccccaag ataaagaata tttgaaaaaa
     1201 attgctacta cttctatgtc atccaaactg acatctacta attccccaga attgtcaaat
     1261 atagtaataa atgcagtatt atctatttta gaaaaatatg atgaatataa caaaaagttc
     1321 aaagtagatg ttgacaatat aaaggtcgaa aagaaacctg gaggctcaat tggagatact
     1381 aaacttatta atggaattgt tcttgataag gaagttgttc atggtggtat gcctaagaga
     1441 gttgaaaatg ctaagattgt attacttaat tgtccattag aaattgagaa aactgaattt
     1501 gatgcaaaaa taaatatcaa taatcctgaa caaattcagc aattcattaa tgaagaaaac
     1561 atgatgttaa aagcaatggt tgacaaaatc tcaatcacag aggctaatgt agtattatgt
     1621 caaaaaggaa ttgatgaaat ggcacaacat tatttggcta aatcagggat attatcagtt
     1681 agaagaatca aagaaagtga tatgttcaaa ttatcaaagg caactggagc aagattgatt
     1741 acgaaccttg atgatcttac acaagaggac cttggtcacg ctaatttggt agaagagaga
     1801 cacatagaga gtgataaatg ggtatttgta gaagaatgta aaaatccaaa atctgtaact
     1861 attttagtaa gaggaggatc ccaaagagtc attgatgaag tagagagatc tattcatgat
     1921 g
//
LOCUS       DATCMF010000226         1546 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_493965, whole genome shotgun sequence.
ACCESSION   DATCMF010000226 DATCMF010000000
VERSION     DATCMF010000226.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1546)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1546)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1546
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_493965"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..233)
                     /locus_tag="VIL14_02845"
     CDS             complement(<1..233)
                     /locus_tag="VIL14_02845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522675.1"
                     /translation="MVLQLFRKEIYLPFLLSISLFLIIDISSYNHIALGQNDDDDNRD
                     SNDNNVREEEKEEKQDDDDNRDSKDNNVREEEK"
     gene            complement(354..650)
                     /locus_tag="VIL14_02850"
     CDS             complement(354..650)
                     /locus_tag="VIL14_02850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522676.1"
                     /translation="MNNKNFILQQLKWISIYFAISIVISFIIPFPYSIIVIIPIVLFL
                     SFYIRRREMRKFGGGVENFSMFNSNKINYYCMVCGTKHDNLMCPKCGSKMKKIG"
     gene            784..>1546
                     /locus_tag="VIL14_02855"
     CDS             784..>1546
                     /locus_tag="VIL14_02855"
                     /inference="COORDINATES: protein motif:HMM:NF014658.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MqnA/MqnD/SBP family protein"
                     /protein_id="HEY8522677.1"
                     /translation="MIDITLGHTPDADDAFMFYGLASENVESNEFQITHVIEDIEKLN
                     KRALNNELDITAISVYAYAFLKDYMILRSGGSFGINYGPIILAKEKFLKGDLNKKTIA
                     VPGRMTSAYLLLSLLLGNFKEKELPFHMIPQAIIDNQVDAGLVIHEIQLTYKSLNLHK
                     IIDLGSWWNMLTNGLPVPLGINVANNKTLTLDQIRRFDYLFKNSIIYGLNNIEEALDY
                     AMKYGRSQSKDMISKFVKMYVNEITVDMGEKGKTSI"
BASE COUNT          556 a          208 c          205 g          577 t
ORIGIN      
        1 tccttttctt cctctcttac attattatcc ttactatctc tattatcatc atcatcttgc
       61 ttttcttcct tttcttcctc tcttacatta ttatcgttac tatctctatt atcatcatca
      121 tcattctgtc ctagtgcaat atgattatag gaggaaatat caataattaa aaatagtgaa
      181 atacttagta aaaatggaag ataaatttct tttctaaaca actgtagtac cattactcat
      241 gttattctaa attatattag ctttaagtaa cgtattacta gataataata ctggtatatt
      301 taatagaaat aattactata tgaaactatc attagattgt tttgttatat ttgttatcct
      361 atttttttca tttttgaacc gcattttgga cacattaaat tatcatgctt agttccacat
      421 accatacaat aatagttaat cttgttagaa ttaaacatag aaaaattctc tactcctcct
      481 ccaaactttc tcatttctct tcttcttata taaaagctta aaaataacac tattggaatt
      541 attacaatta tcgaataggg aaatggaatt ataaaagaaa ttacaatact aattgcaaaa
      601 tatattgata tccattttaa ttgttgtaaa ataaaatttt tattattcaa taactatatt
      661 atatatttca tctaaataaa tcttgatcta cttttaatta ttgaaacatt ttttgattta
      721 atagctcacc aaacacttaa ttaatataac gaaaaggttc gtattgtatc taaataacta
      781 taaatgattg atataacttt agggcatact ccagatgctg atgatgcttt tatgttttat
      841 ggattagcaa gtgaaaatgt agagtctaat gaatttcaga ttacccatgt gattgaagat
      901 attgaaaagc ttaataaacg tgcattaaat aatgagttag acataacagc tatatctgtt
      961 tatgcctatg cttttctgaa ggattatatg attcttcgaa gtggaggaag ttttggaata
     1021 aattacggtc caattatttt agcaaaagag aaatttttaa aaggtgattt gaataaaaag
     1081 acaatagctg tacctggaag gatgacttca gcgtatttat tattatctct tttattaggt
     1141 aattttaaag aaaaagaatt accttttcat atgatacctc aagcaattat agacaatcaa
     1201 gttgatgctg gcttagtaat tcatgaaatt caacttacgt ataagtcatt aaatctacat
     1261 aaaattatag atttaggatc ttggtggaat atgcttacta acggtttgcc tgtaccattg
     1321 ggtataaatg ttgcaaataa taaaacatta acactagacc agattagacg ctttgactac
     1381 ttgtttaaaa attctataat ttatggtcta aataacatag aagaagcgtt agattatgcg
     1441 atgaagtatg gaagaagtca atcaaaagat atgatatcta aatttgtaaa gatgtatgtg
     1501 aatgaaatca ccgttgatat gggtgaaaag ggaaagacat ccattg
//
LOCUS       DATCMF010000227         2035 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_494270, whole genome shotgun sequence.
ACCESSION   DATCMF010000227 DATCMF010000000
VERSION     DATCMF010000227.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2035)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2035)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2035
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_494270"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2035
                     /locus_tag="VIL14_02860"
     CDS             <1..>2035
                     /locus_tag="VIL14_02860"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: protein motif:HMM:NF009687.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HEY8522678.1"
                     /translation="MEPIITSKSWNHEIESEVLKSWDVENLYSFNLKKNNNSDNVFVI
                     DTPPPYPSGKPWHIGAAAHYAQIDMIARTARMKGHNVMFPIGIDRNGLPVEIYTEKKY
                     KVRMRQMSREKFLELCKTALDDLEKDMIEIMINLGLSSNFKEYYRTDSLEFRTLTQKT
                     FIDLWNKGMIYISNRPNNYCIDCGTTISDAEIIYEDLPTNLFYMYFSIADKNQEKLVV
                     ASTRPELLFACQAVIINPKDERYSHLIGKEVILPLFNRKVPISTHHSAKPDFGSGVVM
                     VCSYGDQNDVQVFRELNLKEIISIDENGFTTPFAGNYSDMKLKQARQKIIEDLRREGF
                     IEKEENIMHRSPICERSKTPVEIIPLQDYYLKQIEYIPILKELSKKLNFYPPVHRQIL
                     NNWLNAVSIDWPISRRRFYGTEIPVWFCQNCKFPNLPKSGSYYQPWKEKPPFTTCANC
                     GLNEFIGEEKTFDTWMDSSITPLFISKFSQDNKFYNRTYPATIRPQAKDIIRTWLYYT
                     MLRCYQLTEKVSWPNVWIMGYGVDEKGKKMSKSKGNVIDPLPIIQKYGADTFRFWSAS
                     ETNLGQDFRCSEQSISNSQRFLSKLWNLGRFLSSFEVPKDFSTDSLKNKNLFYTDKWI
                     LSELNKLINTCIKGYDSYNFFIPATSIRDFTWNIFASHYVEMIKGRVYDNENK"
BASE COUNT          760 a          286 c          348 g          641 t
ORIGIN      
        1 aaatggaacc tataattact tccaaatcct ggaatcacga aattgaatca gaagtattaa
       61 agtcatggga tgtagaaaat ctttattctt ttaacttaaa aaagaataac aatagtgata
      121 atgtatttgt tattgatacg cctccgccat atccctcagg aaaaccatgg catatcggtg
      181 ccgctgcaca ctatgctcag atagatatga tagctagaac ggcaaggatg aagggtcaca
      241 atgttatgtt tcctattggt atagatagga atggccttcc cgtagagatc tatacagaaa
      301 aaaaatacaa agttcgtatg cgacagatga gtagagaaaa atttctagaa ttatgtaaaa
      361 ctgctcttga cgatcttgaa aaggatatga ttgagataat gataaatctc ggtttaagta
      421 gtaatttcaa agagtattat agaacagatt cactagaatt tagaacttta acccaaaaaa
      481 cctttatcga tttatggaac aaaggtatga tctatatttc taatagacca aataattact
      541 gtattgattg tggtactacc atatccgatg cagaaatcat ctatgaagac ttgccgacaa
      601 atctctttta tatgtatttt agtatagctg ataaaaatca ggaaaaatta gtggtagctt
      661 ctactcggcc tgaactactt tttgcttgtc aagcagtaat aataaatcca aaagatgaaa
      721 gatattctca tttaattgga aaagaagtaa tattgccctt gttcaataga aaagtcccaa
      781 tttcaaccca tcattctgca aaacctgatt ttggatctgg tgttgttatg gtatgtagtt
      841 acggtgatca aaatgatgtt caagttttta gagaactaaa tctaaaagaa attatatcta
      901 ttgatgaaaa tggatttact actccttttg caggaaatta cagtgatatg aaattaaaac
      961 aggcaagaca aaaaatcatc gaagatttga gaagggaagg ttttattgaa aaagaagaaa
     1021 acatcatgca tagatctcca atttgtgaaa gaagtaagac accagtagaa attatacctt
     1081 tacaggatta ctatcttaaa caaatagaat atattccaat tctcaaagag ttatctaaaa
     1141 aattaaattt ttatcctcct gttcatagac agatattaaa caattggtta aatgcagttt
     1201 caattgattg gcctatatca agaagacggt tctatggaac tgagatacca gtttggtttt
     1261 gtcaaaattg caaatttcct aatttaccta aatctggtag ctattatcag ccatggaaag
     1321 aaaaaccgcc ttttactacc tgtgctaatt gtggattgaa cgagtttatt ggtgaagaaa
     1381 aaacattcga tacatggatg gactcaagta ttacaccatt attcatatcc aaattttctc
     1441 aagataataa attttataat agaacatatc ctgcaacaat cagaccacaa gcaaaggata
     1501 tcataagaac ttggttatat tatacaatgc tcagatgtta tcaattaaca gaaaaagtat
     1561 catggcctaa tgtttggata atgggttatg gtgtagatga aaaaggaaaa aaaatgagta
     1621 aaagtaaagg aaatgttatt gatcccttac caataataca aaaatatgga gcggatacat
     1681 ttaggttttg gtctgccagt gaaacaaatt tgggacagga ttttcgttgt tctgaacaaa
     1741 gtatttctaa ttcacaaaga tttctctcaa agctatggaa tttaggtaga tttctttctt
     1801 cttttgaagt acctaaagat ttttcaacag actctttaaa aaataaaaat cttttctata
     1861 cggataagtg gattttatct gagttaaaca agctcataaa tacgtgtata aaaggatatg
     1921 atagttataa cttttttatt cctgcaacaa gcataagaga ttttacatgg aatatttttg
     1981 catctcatta tgtggaaatg attaagggta gggtatatga taatgaaaat aagaa
//
LOCUS       DATCMF010000228         1883 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_181457, whole genome shotgun sequence.
ACCESSION   DATCMF010000228 DATCMF010000000
VERSION     DATCMF010000228.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1883)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1883)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1883
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_181457"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(230..1186)
                     /locus_tag="VIL14_02865"
     CDS             complement(230..1186)
                     /locus_tag="VIL14_02865"
                     /inference="COORDINATES: protein motif:HMM:NF013539.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0097367 - carbohydrate derivative binding
                     [Evidence IEA];
                     GO_process: GO:1901135 - carbohydrate derivative metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HEY8522679.1"
                     /translation="MNSIELMKKEIEYQVDKLKISIIEKNKNSSEYLFVGSGDSFVSG
                     LIASYESNFNCLCIDPVELIINPTLSKNKIVCFISISGKTKENILAAKKVKKYCKETI
                     AITANSTSDLAKNCMRVINLAYQKPPLATAGTLGFMLTTMTALALATKSKAVNNTKII
                     YEKAEQFANDTIDKIKKYSSLNKDRSFFFLGNSTLFPISSYGSLKINEVLGLKSSAYS
                     VEYFCHSPLFSLTHKDIVIIFSSKKQYINKKDNKLNSLLNKQKFSSFLIEIPFNTNIE
                     IIYFSSFFVQLFVYGLAKEKKLKNCYFLENKELLKISSDLIY"
     gene            complement(1400..1555)
                     /locus_tag="VIL14_02870"
     CDS             complement(1400..1555)
                     /locus_tag="VIL14_02870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522680.1"
                     /translation="MVTFYARNELTHFKIIFTDKSKSNIEHVDHIFAIKDKIGNLIAR
                     NTPIHSR"
BASE COUNT          614 a          249 c          242 g          778 t
ORIGIN      
        1 tctgattcaa tttcttttcc agaatttcta tcaggatgat attttttcac gagaaatctg
       61 tatgactttt tgatatctag gaatgtcgca tcttcacgta ctcctaaaat gctatagtaa
      121 tcaggaatat ccaattaata attataataa acttcattgg gtatttcttt atttacattg
      181 acttgcttca aaattttggt aattgtctcc gttctatact aaaattaatc tagtatatta
      241 gatcagagct aattttaagc aactccttat tttctaggaa ataacaattt tttaattttt
      301 tttcttttgc taacccatat acaaataatt ggacaaagaa agaagagaaa tatataattt
      361 ctatattagt attaaaaggt atttcaataa gaaatgaaga aaatttttgc ttatttaaaa
      421 gagagtttaa cttgttatct tttttattga tatattgctt tttggatgaa aaaataatta
      481 ctatgtcttt atgtgttaaa ctaaataatg gtgaatggca aaaatattcg actgaatatg
      541 cagacgattt taatcctaat acttcattta tctttagtga accgtaagaa gaaattggaa
      601 ataaagttga gttacctaga aaaaaaaagg atctgtcttt atttaacgaa gaatattttt
      661 taattttatc aattgtatca tttgcaaatt gttcagcttt ctcataaatt attttggtat
      721 tattaactgc ttttgatttc gttgctaatg ctaatgccgt cattgtagtt aacataaagc
      781 ccagtgttcc tgcagtagcc aaaggcggtt tttgataggc tagattaatt actctcatac
      841 aattttttgc aaggtcgcta gtagaattag cagtaatagc tattgtttct ttgcaatatt
      901 tttttacttt ttttgctgct aaaatatttt cctttgtttt tccagaaata gaaataaagc
      961 atactatttt attcttactt aaagttggat taattattaa ttcaacagga tctatacata
     1021 aacaattaaa attagattca taacttgcta ttaaaccaga aacaaaagaa tcacctgaac
     1081 cgacaaaaag gtattcagag ctatttttat ttttttcaat gatactaatt tttaatttat
     1141 ctacttgata ttcaatttct tttttcatta attctataga attcatatca actacctaag
     1201 tgagataaca ctctttacat aaatattata aatctattag tcttgtcaaa gtaattcttt
     1261 gagaattttt agtatttatt attattcaaa tacaactttt actttttgtg gatctgagtt
     1321 gaaatgataa accccttatt gttaattcta aaagcaaatt ttgtaaatgg tcaattttaa
     1381 attgggtcat ttccattccc tatcttgaat gaataggggt atttcgagca attaagttac
     1441 ctattttatc ttttatagcg aaaatatgat ctacatgttc tatgttactt ttgcttttat
     1501 ctgtaaaaat gattttaaaa tgagtaagtt catttctagc gtagaaggtg accatgtaat
     1561 ttccacatcg atctctttta cttccgtttt ttagttttaa tatttttgta acatcaacaa
     1621 ttccttacat ccagtgatat tgaggggatt gaaatgtata cttaccattt tttttcgaat
     1681 ttaaatgaaa agtatcttta ggattgattt tataattttt attggtaaca ttattctgac
     1741 ttagtatttc tatttcatgg ggaatattgt ctgcattact ccactttata tttttcctgg
     1801 ctttattgga taatatgtga tatcatagaa tctttctctt ttttcattaa ttctatagaa
     1861 ttcatatcaa ctacctaagt gag
//
LOCUS       DATCMF010000229         1644 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_229654, whole genome shotgun sequence.
ACCESSION   DATCMF010000229 DATCMF010000000
VERSION     DATCMF010000229.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1644)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1644)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1644
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_229654"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..227
                     /locus_tag="VIL14_02875"
     CDS             <1..227
                     /locus_tag="VIL14_02875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522681.1"
                     /translation="SIDITDIDGNNIILEGIRTKFTTYDAAKSYSEFYRDLYKKQYKF
                     HVVGSNKRYTLGFLDVISLPQKAFKAKRYN"
     gene            complement(854..1081)
                     /locus_tag="VIL14_02880"
     CDS             complement(854..1081)
                     /locus_tag="VIL14_02880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522682.1"
                     /translation="MSIDSPMDEISNAKTKVEDLESEIKNIDKKLELIKDTSEYRSNT
                     ELVKVYDNIITYYKNLVMAYKKYIETVEKNI"
     gene            complement(1290..>1644)
                     /locus_tag="VIL14_02885"
     CDS             complement(1290..>1644)
                     /locus_tag="VIL14_02885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="SHOCT domain-containing protein"
                     /protein_id="HEY8522683.1"
                     /translation="IRFKAPGLMSSTKLGMMDSIIEGEDDQTGVIEAIPKDKAEDLLE
                     IIRSGMTDGRKSAPSKKNISSKLFEPQVHNPSSNQSISIADELEKLAKLKQDGVLTEE
                     EFNQMKHDLIRNIKR"
BASE COUNT          574 a          218 c          215 g          637 t
ORIGIN      
        1 attctataga cattacagat attgatggaa ataacatcat tctagaggga ataagaacga
       61 aatttacaac atatgatgct gctaaaagtt attcagaatt ttatcgtgat ctatataaga
      121 aacaatacaa gttccatgta gttggtagca ataaaagata tactttggga tttttggatg
      181 ttatatctct gcctcagaag gcttttaaag caaagcgata taactgataa cttctcgtta
      241 cagccataaa accttgctac atcttttgtt ttaaattctc tatgttctat cgattgctta
      301 tgagtaagat gataaaatcc caccgagatg atagttaata tcgtgaacct tcgtgaaaat
      361 aatgaactat atttataatt ttaatgaata tagtttaatt aaacatcgga aattaattaa
      421 aagaaaggaa tcagtaatga tagttatggt caatggattg gccttatcca tatcatgatt
      481 atatatttaa ttagtgatgc aaaactgatg gcaataaaat ttaaaaggac tataaattaa
      541 taacaattac aaaaaaaatt atgataatag aaacttttac taaagttaaa gtaatcaaga
      601 atattgttgt aagtaaattt ttgttatatt attttaatat atattctaat aattttatgt
      661 gaaaataata atgatagatc aaagttatta ttataatata tccattgtat aaagttaatc
      721 aaaaatcaga acaataaata aatgattgta actaatacag gtattcagat atattgacaa
      781 acagaaatta gtaattggat tctatttgcg tatacaaaca aatatttttt attgcttagg
      841 aatgcagttc attttaaatg ttcttttcaa ctgtttcaat atatttttta tatgccataa
      901 ctagattttt atagtatgtt attatattat cgtaaacttt aaccagctct gtattagatc
      961 tatactctga agtgtcttta attaattcta gttttttatc aatattcttt atttcacttt
     1021 ctagatcttc aactttcgtt tttgcgtttg aaatttcatc cattggagag tctatcgaca
     1081 tactatctca tatataataa catcttattt cttttattat ataaaatctt cactgcacat
     1141 ttttaattgg taatataata atttaatgaa aagataacta ttgttctatt atatttaacg
     1201 gctgaagaat ttcatcttgt ttgcgaccat gagttaagaa atatactgaa tctaatattc
     1261 tttaccttaa aaattaaaca atatttgtac tatcttttaa tatttctaat taaatcgtgt
     1321 ttcatttgat taaactcttc ttcagttaga actccatctt gtttaagttt tgcaagtttc
     1381 tctaattcat cggcaattga tattgattga ttagacgagg gattatgaac ttggggttca
     1441 aacaatttgg aggatatatt ctttttggaa ggtgctgact tacgaccatc agtcatccct
     1501 gaacgaatta tttccaacaa atcttctgcc ttatcttttg gaatagcttc tattacacct
     1561 gtttgatcat cttcaccttc gattatactg tccatcattc ctaatttggt tgagctcatt
     1621 aatccaggag ctttaaatct gatt
//
LOCUS       DATCMF010000230         1570 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_181512, whole genome shotgun sequence.
ACCESSION   DATCMF010000230 DATCMF010000000
VERSION     DATCMF010000230.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1570)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1570)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1570
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_181512"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            112..258
                     /locus_tag="VIL14_02890"
     CDS             112..258
                     /locus_tag="VIL14_02890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522684.1"
                     /translation="MERKDNDQNKQKNSIYEKYIIDNLKKYYNIDDHTDLLKFIKKHT
                     NHHH"
     gene            complement(400..1158)
                     /locus_tag="VIL14_02895"
     CDS             complement(400..1158)
                     /locus_tag="VIL14_02895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522685.1"
                     /translation="MRISHDATEAVLTTISEQKIDLMIIDYETMRSNKKLQTLVTCDV
                     LAVIPHSEDFIVLEPQNNFNETRLTPKENKKNIIILYDNGDNSDEILRVTSWFTNIER
                     FNLNVIAINRKGLNNDNNKTNSKSKESINDKDASIFTKRRKFFQEAGIELHEIYVTED
                     IEKDSTKFAKLIIESILKCNPDMIISESYIGKYNLFTNTKFAHLLLSQLNYPIIIVRD
                     YTLPLVSILTHIMMKITGNLGPYYLVRLMKNKIK"
     gene            complement(1284..>1570)
                     /locus_tag="VIL14_02900"
     CDS             complement(1284..>1570)
                     /locus_tag="VIL14_02900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522686.1"
                     /translation="LIGIVLMVSLAVYLLITAPLSWAITVLWVLVGFFIYRIFTFKKE
                     VEHYSPTITSEGNLVRKDFRILLPYTPENPDRLIQYAIKVAKKKMVKLIF"
BASE COUNT          555 a          208 c          199 g          608 t
ORIGIN      
        1 ggtattattt gattatttaa tattttaaat tgaaaaggct caataaaaaa cgaaattttt
       61 tctaaaaatg ctcttggaaa atataaatat aattatttga gagaatttag tatggaaaga
      121 aaagataatg accaaaataa acaaaaaaat agtatttatg aaaagtatat tatagataat
      181 ttaaaaaaat attataatat tgatgaccat acagatttat taaaatttat aaaaaaacac
      241 actaatcatc atcattagat gtcatcaaga taatagtgat tgaaaaaaaa atttatcatt
      301 attactagaa tattacggaa aaagataatt tagacaaata atctgtaagt taagaaatca
      361 attaattatt gtgctaacta ttactaagac cgattaaggc tattttatct tatttttcat
      421 taatctcaca agataataag gacctaaatt acctgtgatt ttcatcataa tgtgggttag
      481 aatactaact aatggaagag tgtagtctct tacaattatt attggataat ttaattgaga
      541 caacaataaa tgagcaaatt ttgtattagt aaataaatta tatttaccta tatatgattc
      601 acttattatc atatctggat tacattttag aatcgattct attatcaatt ttgcaaattt
      661 tgtactatct ttttctatat cttctgttac ataaatttca tgtagttcaa taccagcttc
      721 ttggaaaaat tttcgtcttt ttgtaaaaat agaagcatct ttatcattta tagattcttt
      781 tgatttagaa ttggttttgt tgttatcatt attcaaacct tttctattta tcgcaattac
      841 attcaaattg aatctttcta tatttgtgaa ccaactcgtt actctcaata tttcatcaga
      901 attatctcca ttatcgtata aaattataat atttttttta ttctctttgg gtgtcagtct
      961 tgtttcattg aaattgtttt gtggctccaa tacaatgaag tcttcactat gaggaataac
     1021 tgccaaaaca tcgcatgtaa ccaatgtctg taattttttg ttacttctca ttgtttcata
     1081 atctataatc attaaatcaa ttttttgttc tgatattgtt gttagaactg cttctgtggc
     1141 atcatgagaa atcctcacaa aataatgcca tataacattt tctttattta ataaatcttc
     1201 aagagggtca aatgtctttc ttgctgaatc tgtaaaggca attcctgcag ataaaggtgt
     1261 ttgaggagga acccttattg ttcttaaaat attaatttca ccatcttttt ctttgcaact
     1321 tttatggcgt attgtattag tctatctgga ttttctggag tgtaaggtaa tagaattcta
     1381 aaatcttttc tcacaagatt tccttcgctt gttattgttg gagaataatg ttctacttct
     1441 tttttaaatg taaagatacg atagataaag aaacctacta ggacccacaa tacagtaata
     1501 gcccagctaa gtggtgcagt aattaaaaga tacacagcca aacttaccat taatactatt
     1561 cctattagtg
//
LOCUS       DATCMF010000231         3132 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_363285, whole genome shotgun sequence.
ACCESSION   DATCMF010000231 DATCMF010000000
VERSION     DATCMF010000231.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3132)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3132)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3132
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_363285"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..940)
                     /locus_tag="VIL14_02905"
     CDS             complement(<1..940)
                     /locus_tag="VIL14_02905"
                     /EC_number="4.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UbiD family decarboxylase"
                     /protein_id="HEY8522687.1"
                     /translation="MIQKDNSNIANIPNDLREFIELLENENEIIRIKKNVNTTFELPA
                     IVSKLDGNKAVIFENVEDKTIPVISNLIGTRKRFAMAIGSKEKNDIHTIINKSINNMN
                     IKIKIGNDIPYYQNSSNKLSVLPIVTHFENDAGPYITSSIVYAKDQENGNQNSSTHRL
                     LKLDDKNMAIRMVEGRHLHKCFMYAKDHGEDLKVAIVIGVHPVINIAAAYQASYGIDE
                     MYIANTLLNGNLQLGINKFSQLLIPAMSEIVLEGKILCDKTHEEWMVEMLKTYDFRRQ
                     QPIFELENIRFRNNAIFHDILPGYSEHRLLMGLPVES"
     gene            complement(918..1289)
                     /locus_tag="VIL14_02910"
     CDS             complement(918..1289)
                     /locus_tag="VIL14_02910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522688.1"
                     /translation="MEDKDDVLVKDIKIDDKRIVHIKSIFFENGCFIIISENSNRIGS
                     VTMATSISNKVTSAIVIPSKFDSIFIKSIAQRVSLMLNGICLVSLHIKTPLDVKSMKT
                     IMGEILNMISTRAENDTKRQF"
     gene            complement(1578..2228)
                     /locus_tag="VIL14_02915"
     CDS             complement(1578..2228)
                     /locus_tag="VIL14_02915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522689.1"
                     /translation="MRETLNHKITVATLNGKSYYKIINTLKLLQLNYEELSPSEALNS
                     YSRIIITSKEESPIFKKKNIIVDSELNENPVIIKAKILRKLIKSHTYDQLTIGIDPGN
                     RIGISIFYLYDEIESVVLSTIESTLNFIIKILSEINAKKKIVRIGDGNINMARTIAFL
                     IKSNFKDLVHIEIVNEYGTSSIQNNESNRRILKDKSSARLIAFRNGKIFDPKVDHN"
     gene            2807..>3132
                     /locus_tag="VIL14_02920"
     CDS             2807..>3132
                     /locus_tag="VIL14_02920"
                     /inference="COORDINATES: protein motif:HMM:NF017442.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF790 family protein"
                     /protein_id="HEY8522690.1"
                     /translation="MLPLELLRTKITNKGQRIIPLFCLASADNLLIAQKLITEFESSY
                     KKKETKGDLQKRLFFYENNYSDFKLIRGLIVLLERQCIFKINQFFSSNYEKNKFSSTQ
                     VLTSFS"
BASE COUNT         1041 a          430 c          389 g         1272 t
ORIGIN      
        1 ttgactccac aggtaatccc atcaatagac gatgttcaga ataaccagga agtatatcat
       61 ggaaaatagc attatttcta aatcttatat tttctaattc aaatataggt tgctgtcttc
      121 taaaatcata tgtttttagc atttctacca tccattcctc atgggtttta tcacacaata
      181 tttttccttc taaaactatt tctgacattg ctggaataag aagctgcgaa aacttgttaa
      241 tacccaattg tagatttcca tttagtaatg tatttgctat atacatttca tctataccat
      301 atgatgcttg gtaagctgct gcaatgttaa ttacaggatg aactcctatc acaattgcaa
      361 ccttcaagtc ttccccatga tctttagcat acataaaaca tttatgcaaa tgtcttccct
      421 ctaccattct tattgccata tttttatcat ctagttttaa caaccgatgg gtagaagaat
      481 tttgatttcc gttttcttga tcttttgcat acacaattga tgaagtaata tatggtccag
      541 catcattttc aaaatgtgta acaataggaa gaacagataa tttatttgac gaattttgat
      601 aatatggaat gtcatttcct atttttattt taatattcat attgttgata gatttgttaa
      661 tgattgtatg gatgtcgttt ttttcttttg aacctattgc cattgcaaat ctttttcttg
      721 ttccaataag attgctaata acgggaatag ttttatcttc gacattttca aatattacag
      781 ctttattacc atcaagttta ctgactattg ctggtaattc aaatgtagta ttaacattct
      841 ttttaattct aatgatctca ttttcatttt caagtaattc tataaattct ctaaggtcat
      901 taggaatatt agcaatatta gaattgtctt tttgtatcat tttcagcccg tgtacttatc
      961 atatttagta tctcacccat aattgttttc atactcttaa catctaatgg tgttttaata
     1021 tggagagaca ctaaacaaat tccatttagc attaatgata ctctttgagc aatggattta
     1081 atgaagattg aatcaaattt gctgggtatt actatagctg atgttacttt atttgatata
     1141 ctagtcgcca ttgtaacaga tccgattcta ttagaatttt ctgatattat gataaaacat
     1201 ccattttcaa aaaaaattga ttttatatga acgattcttt tatcatctat cttaatatct
     1261 ttgactaaaa catcgtcttt atcttccatt ttatgctatc attatttaac taatatcact
     1321 tttattaact aagtaaatgt aattttgaaa aacttagtat ttagatttat ttcgttattc
     1381 aaataattac tattaaaatt atagaattgt aattctctgt atacaaatac ttaaaatgta
     1441 atttatgcca aaatattatg aaataatcta gtattatatt ataacaagtt aatatgtaaa
     1501 atacttctaa acactatatc aattgtcaaa tgtaaattat aaatagtaga ttcttagatg
     1561 ttttaatcaa tattatatta attatgatct acctttggat caaaaatctt gccatttcta
     1621 aaagcaatta gtctagcgga tgatttatct ttaagtattc ttctgttact ttcattattt
     1681 tggatggatg aagttccata ctcatttact atctcaatat gaaccaaatc tttgaaatta
     1741 gattttatta aaaatgcaat agttctagcc atatttatgt taccgtctcc tattcttaca
     1801 atctttttct tcgcatttat ctctgagagt attttgataa taaaatttag agttgattcg
     1861 attgtagata atactacgct ttctatttca tcatataaat agaaaattga tatgcctatc
     1921 ctatttcctg gatcaatacc aattgttaat tgatcataag tatgagattt tattaatttc
     1981 cttaatattt ttgcctttat tattacagga ttctcattta attctgaatc tactattatg
     2041 ttttttttct tgaatatagg cgattcttcc ttggatgtga ttatgattct tgaataagag
     2101 tttaaagctt ctgatggtga taactcctca taatttaact gaagtaattt tagggtatta
     2161 ataattttat aataggattt accattaagt gtggctacag taattttatg gttcagtgtt
     2221 tccctcattc agggtaattc aacaaagtac ttttatcact aattagtatt aaatgttatc
     2281 catccaatca gtgagttagt tatttttgta atagctaagc agtgatgtca cttattttcc
     2341 taaaatttat taattctttt atatcaattt tatttaatta taatctgtga ggtctgaaga
     2401 tttggaagta taattttgaa ttctcgttta ttcttcgatt ctatttgata ttgttataat
     2461 cgttatgaca gcaacgatta gaagatcaac cttgttctta tcagaatggc tattggttta
     2521 gcaatataat ttactaatta catctcgaat tagttggaca aaaatatagt atgagtatta
     2581 atttaaattt actcttttat atttaaaaat aaaaattgat cattatgtat taacataaat
     2641 aatggattta ataatatata agatagttta ttcaaaacgg ataatattaa aattgaagac
     2701 gtctacaata tatcaaatta taattacagg tataatgtgt atagcttttc atagattagg
     2761 atggctgatt aggagaattt agtcgtttat tattatttct gtaaatatgt tgcctcttga
     2821 attattaagg acaaaaataa ctaataaagg tcaaagaatt attcctttat tttgtttagc
     2881 ctctgctgat aatcttttaa ttgcccaaaa actaataaca gaatttgaat cctcatataa
     2941 gaaaaaagag acaaaaggag atttacaaaa aagattattt ttttatgaaa ataattacag
     3001 tgattttaag ctaattagag gtctcattgt actattagaa agacagtgta ttttcaaaat
     3061 taatcaattc ttttcttcaa actatgagaa gaacaaattt tcttcaactc aagtactaac
     3121 ttccttttcg tt
//
LOCUS       DATCMF010000232         2220 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_182553, whole genome shotgun sequence.
ACCESSION   DATCMF010000232 DATCMF010000000
VERSION     DATCMF010000232.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2220)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2220)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2220
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_182553"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..903)
                     /locus_tag="VIL14_02925"
     CDS             complement(<1..903)
                     /locus_tag="VIL14_02925"
                     /EC_number="1.1.5.-"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016901 - oxidoreductase activity, acting
                     on the CH-OH group of donors, quinone or similar compound
                     as acceptor [Evidence IEA];
                     GO_function: GO:0070968 - pyrroloquinoline quinone binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HEY8522691.1"
                     /translation="MAILAVTSAIVTIFISPLDTTIPIPEPSFLSNTTNQNKGIDIIA
                     ENLSTPWAIDIAKDNRIFFTEREGKIRVIDEKGILLDEPVAYIRVAQNGGSGLLGIAI
                     HPNFTENHLMYIYQSYMKDNKLYNKVLLLKEKDNKIIESKIIIDSIPGSPYNNGGRIK
                     FGPDSKLYITTGDASDPLLAQNLSSLAGKILRLNPDGSIPSDNPFKGSSIYSYGHRNV
                     QGIAWHPKTKQMYSSEHGPSGFDEINLIISGKNYGWPKEECKGTNISQKAIICFNPAV
                     APSGITFASSNKLGYQNDLIVTTLK"
     gene            complement(1009..1131)
                     /locus_tag="VIL14_02930"
     tRNA            complement(join(1009..1056,1077..1131))
                     /locus_tag="VIL14_02930"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1078..1080),aa:Ser,seq:tga)
     gene            1475..>2220
                     /locus_tag="VIL14_02935"
     CDS             1475..>2220
                     /locus_tag="VIL14_02935"
                     /EC_number="2.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HEY8522692.1"
                     /translation="MIPINRPWIDNEEKQEIIKVIDENALTSAARDGGKRVQDFESSL
                     RRFLNVKHVVAVNSGTAALHAALLALDIKTDDEVLLPSFTFVATANAVVASGAKPVFV
                     DINTKDYTIDLHDLKKKISRKSKAIIPVHLYGHPADLTELNEIANQHSLYIIEDACQS
                     LGSTYKNKQTGTFGTMGCFSMYASKVLTAGEGGAIVTNEDKIADTLKMIRNHGMVEGY
                     DTRVLGLNYRLPELSAAIAKIQMKKLKTIL"
BASE COUNT          775 a          343 c          341 g          761 t
ORIGIN      
        1 tttgagagtt gttacgatta gatcattttg ataacctaat ttatttgatg aagcaaacgt
       61 tataccagaa ggtgccactg caggattaaa acaaataata gctttttgag aaatatttgt
      121 tcctttacat tcttcctttg gccatccata gttctttcct gaaataatca aattaatttc
      181 atcaaatcct gatggaccat gttctgatga atacatttgt tttgttttgg gatgccatgc
      241 aattccctga acatttctat gtccatatga ataaatagat gagcctttaa atggattatc
      301 agaaggaata gatccatccg gatttaagcg taatatttta cctgcaagtg aagaaagatt
      361 ttgtgctaaa agtggatcag aagcatcacc agtggtaata tatagcttag aatcaggtcc
      421 aaactttatt cttcctccat tgttatatgg tgaccccgga atagaatcaa ttattatctt
      481 tgattcaata attttgttat ctttttcttt taaaagtaaa actttattat aaagtttatt
      541 atctttcata tagctctgat aaatgtacat taaatgattt tctgtaaagt taggatgaat
      601 agcaattcct aataatcctg aacctccatt ttgtgcaact ctgatataag ctactggttc
      661 atcaagaagg attccttttt catcaattac cctgatcttt ccttcgcgtt cagtaaaaaa
      721 gattctatta tcttttgcaa tatctatagc ccaaggtgtt gagagatttt ctgcaattat
      781 atcgatacct ttattctgat ttgttgtatt actcaaaaat gagggctctg gaataggaat
      841 agtagtatct aacggagaaa taaaaattgt aactattgca cttgtaaccg ccaatatagc
      901 cattgctact cctaatcttt tgtccattaa tgcgagtttg attatcaaag tctaataaat
      961 tttataccta atcttaaatt gattcaataa tctttttcaa aatataaacg cagatgagga
     1021 gattcgaact cctgatcgcc cgaaggcgaa tcggcttgct ttaaccttga agattactca
     1081 aggccgacgc attattgtgt tctgtaaaga agaccactct gccacatctg cacaaagata
     1141 agtcaaataa cttattatta tattttaata atattaatag ttagtattta aaatagcaaa
     1201 ttaaccaaat tcaaaaacat tttaagtgaa taagtataat acaacaattg ttttctatag
     1261 agaacatttt cctaaaattt agttttaatt gatatatttt aaatattata aatttattta
     1321 gatcttatta aaatagttta ttacagtcta aattttttgc caatgcaaaa tttttaatgt
     1381 gtataatgat acataacaat ggtaaataat ttattgatta atttttatca aaaacactta
     1441 tttaatatcc ttaatcacat aaaatagtta aaaaatgatt cctattaaca gaccttggat
     1501 agataatgag gagaaacaag aaattattaa agtcattgat gaaaatgctc tcacgagtgc
     1561 tgcacgagat ggcggtaaaa gagttcaaga ctttgaatca tctctacgaa ggtttttaaa
     1621 tgttaaacat gtcgtcgccg ttaattctgg tactgcagct ttacatgcag cattacttgc
     1681 acttgatatt aagactgacg atgaagtatt acttccctct tttacatttg tagcaactgc
     1741 caatgcagtg gttgcctctg gcgccaaacc tgttttcgta gatattaata ctaaagatta
     1801 taccattgac cttcacgatt taaagaaaaa aatatctaga aaaagtaaag ctataatacc
     1861 tgttcatctt tatggtcatc ctgcagatct aactgaacta aatgaaattg caaatcagca
     1921 ttccctttac attattgaag atgcttgtca atcactagga tcaacttata aaaataaaca
     1981 aacagggact tttggaacaa tgggatgttt tagtatgtat gctagcaaag tattaacagc
     2041 tggtgaaggt ggagctattg taacaaatga agacaaaata gcagacacat taaagatgat
     2101 tagaaatcat ggcatggttg aaggatatga tacacgagtg ttagggctta actatagact
     2161 tcctgaacta agtgctgcaa tagctaaaat acaaatgaaa aaattaaaaa caattttaga
//
LOCUS       DATCMF010000233         1668 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_363905, whole genome shotgun sequence.
ACCESSION   DATCMF010000233 DATCMF010000000
VERSION     DATCMF010000233.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1668)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1668)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1668
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_363905"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(62..241)
                     /locus_tag="VIL14_02940"
     CDS             complement(62..241)
                     /locus_tag="VIL14_02940"
                     /inference="COORDINATES: protein motif:HMM:NF011481.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc finger domain-containing protein"
                     /protein_id="HEY8522693.1"
                     /translation="MSKPLVLPVCTSCGRAIMPNDQCVKFYCPSCGYVVIWRCESCRD
                     FSRQYKCIGCGFEGP"
     gene            complement(283..1443)
                     /locus_tag="VIL14_02945"
     CDS             complement(283..1443)
                     /locus_tag="VIL14_02945"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEY8522694.1"
                     /translation="MNEDYDVVVAGGSVSGLLAAREIASRGHSVLVIEEDSEIGTPEH
                     CGGLVSLDAISKLGILPRNNTIQNQVKTAIVCSPSKNFQINTANQKVVVLERREFDKS
                     IALQSTRLGAKIRTKCSLREARSMTDSLRKTFRIVTTEGTVQSQYFVDARGISSLIQN
                     DRSGVLLSAQYEVYASWIEKDTVLVEFDNIKYPGFFAWIIPTGEGSGKVGVAGRSINT
                     SRSLLSYLESKGSKFSVIRKVFAPIWINGPIEEFTRGRTIIVGDAAGQTKPTTAGGIY
                     TCGLAGILAGKAISKAIESKNDGCLQDYPMSWTRIFGKEFRNMVIFRKLLERLDNKAL
                     DMIFSNIRSSDIDRVSESGDFDFHAISVRKIMGITGLKIFKTMLDNEARRLL"
     gene            1483..>1668
                     /locus_tag="VIL14_02950"
     CDS             1483..>1668
                     /locus_tag="VIL14_02950"
                     /inference="COORDINATES: protein motif:HMM:NF014083.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004045 - aminoacyl-tRNA hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidyl-tRNA hydrolase"
                     /protein_id="HEY8522695.1"
                     /translation="MPKIRVELKQVIVVRKDIAMGRGKLAAQVAHASLLAVEKARSTR
                     ENWFNLWFKTGQAKVVLK"
BASE COUNT          487 a          388 c          299 g          494 t
ORIGIN      
        1 ctccagatca gaatcggcct ctgagggcaa tatctttacc ctggcaacaa gacgtgtcat
       61 attacggacc ctcgaaacca caaccaatac acttatactg tctagagaaa tctcggcagc
      121 tctcacaacg ccaaataacc acgtacccgc aactaggaca ataaaatttt acacactgat
      181 cattaggcat aatcgccctt ccgcatgaag tgcaaactgg cagaactaat ggtttggaca
      241 ttgtaaaatc ttggttagct ataggaattt ataccttgct tgctacaaaa gccttctagc
      301 ttcgttatct aacattgttt tgaatatttt taacccggta atgcccatga tttttctcac
      361 agaaatcgcg tgaaaatcaa aatctccact ttccgatact ctatctatat cactagagcg
      421 aatattggaa aaaatcatat ctaaagcctt gttgtcaagc cgttcaagaa gttttctaaa
      481 tatcaccata ttgcgaaact cctttccaaa tattcttgtc cagctcattg gataatcttg
      541 taagcagcca tcatttttac tttctatagc tttggaaatg gctttgcctg cgaggattcc
      601 tgccaagccg caggtataaa tcccacctgc tgttgttggt tttgtttggc cggctgcatc
      661 gccaactatt attgtcctgc ctctagtaaa ttcctcaatt ggcccgttta tccaaatagg
      721 agcaaatact ttcctaataa cagaaaactt actccctttg ctttctaaat aagacaaaag
      781 agaacgggag gtattaatcg atctgcctgc cactccaacc tttccacttc cttcccctgt
      841 cggtattatc catgcaaaaa acccggggta tttgatatta tcaaattcta ctaagacggt
      901 atccttttct atccatgatg cataaacctc atactgggct gacaaaagga caccagatcg
      961 atcattttga attaatgaac taataccccg tgcatctacg aaatattggg actgaactgt
     1021 accttctgtc gttactattc gaaaggtttt cctcaaagaa tcggtcatac ttcttgcttc
     1081 ccgaagggaa cattttgttc taattttagc acccaatctg gttgattgta aagcaatcga
     1141 tttgtcgaac tcgcgtcttt caaggactac cactttctga ttcgccgtgt taatttgaaa
     1201 atttttagat ggagaacata cgatagcggt tttgacttga ttctgaatgg tattatttct
     1261 tggaaggatt ccgagtttac taattgcatc gaggctcact aaaccaccgc aatgttctgg
     1321 agtccctatc tcagaatcct cctctatgac aagaaccgag tgacctctgg aagcaatctc
     1381 tctcgccgcg agcagcccag agacactgcc cccagcgact acgacatcat agtcttcatt
     1441 cattatatga ctagcgatcc tttttattag gttaataaaa ttatgccaaa gattcgcgtg
     1501 gaactgaaac aagtaatagt tgtcagaaaa gatattgcaa tgggaagagg aaaattggcc
     1561 gctcaggtgg ctcatgcctc cctattggct gtggaaaaag cccggtccac aagagaaaac
     1621 tggttcaatc tctggttcaa aacaggacaa gccaaagttg ttttgaaa
//
LOCUS       DATCMF010000234         2184 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_364126, whole genome shotgun sequence.
ACCESSION   DATCMF010000234 DATCMF010000000
VERSION     DATCMF010000234.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2184)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2184)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2184
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_364126"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1586
                     /locus_tag="VIL14_02955"
     CDS             <1..1586
                     /locus_tag="VIL14_02955"
                     /inference="COORDINATES: protein motif:HMM:NF044870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522696.1"
                     /translation="YFIFFIMLLILQLPLSFIYSQKDEPVISESIGKQFLPVGSYPVG
                     IGINSVTNKLYVANQFSNTVTVLDGNTNNIESTIQVDNFPYDLEVNPYNNRIYVTNRG
                     SNTVSVIDGSTNQLLSNINVGESPVGISIDPSENRIYVTNLGKNSSLSIIDGISNKVT
                     GNVELNGLFYGVSVNPLTKTIYLSNIKNHTISVLDEKTKNIVNNISVERIPTGININY
                     KSDLIYVTNYLSNSISVIDGKTNKVNSTIKVGQQPVDTIINTLTNKIYVSNIGDNTVS
                     VIDGTTNKKIKDLSVKPNTDKNNGNNDPILDIPINLNFPLLANKLSLNPATNLIYITN
                     TVANGVLVIDGKTDRVVVQLFVEMNPENAGTIECNNTKVPTQSFWLYPINTEIKCTAH
                     ASRGYSFDFWSNMISDNKNPITLNVTDNNLLVANFKPAISTETYIGMVAAIIGSTSIF
                     AGWYYKRRERSYLNTSMNRIDFTYDALKKDRLEGVKQLEEIRKEITNLFKKGKLTDSH
                     YNILDKRITELINTLLRTE"
     gene            1814..>2184
                     /locus_tag="VIL14_02960"
     CDS             1814..>2184
                     /locus_tag="VIL14_02960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522697.1"
                     /translation="MLSFIVINKSNDIYINTLINFDKSLFITINEFHVKLPAELDQFM
                     ILITLYGRELFLPFVLGLIFIFGGKDGKKAVVIAGISILILIPIVSITKDYIERLRPF
                     VPGLDTLMSVDTSYSFPSGHST"
BASE COUNT          834 a          292 c          303 g          755 t
ORIGIN      
        1 tttattttat tttctttata atgttattaa tattacagtt accactatca tttatttatt
       61 cacaaaaaga tgaaccagtt atttctgaaa gtatagggaa gcaattttta ccggtaggta
      121 gctatcctgt tggaatcgga ataaactctg ttactaacaa actatatgta gcaaatcagt
      181 tctctaatac cgttacagta cttgatggaa atacaaataa tattgaaagc acaatccaag
      241 tagataactt tccatatgac ttagaagtaa atccttataa taatagaata tatgtaacta
      301 atagaggttc aaatactgtt tctgttattg atggttctac aaatcaacta ctgtcaaata
      361 tcaatgttgg agaatctcca gtaggaatat caatagatcc ttcagaaaat agaatatatg
      421 tgacaaatct cggtaaaaat tcgtctttat caatcataga tggtattagt aataaagtta
      481 caggtaacgt ggaattgaat ggcctttttt atggtgtatc agttaatcca ttaacaaaaa
      541 caatttatct ttctaatatt aaaaatcata ctatatcggt tttagatgaa aaaacaaaaa
      601 atatcgttaa taatatttcg gttgaaagga tacctacagg aataaatata aattataaat
      661 ccgatttaat ttatgtgact aattatcttt ctaactctat ttctgtaata gatggaaaaa
      721 ccaataaagt aaactcaact ataaaagttg gacaacaacc tgttgatacc ataattaaca
      781 ctttaaccaa taaaatatat gtatctaata tcggtgacaa taccgtatct gtaatagatg
      841 gaacaacgaa taaaaaaatt aaagatctgt ctgttaaacc aaataccgat aaaaacaatg
      901 gtaataatga tcctattctt gatataccta taaatctaaa ttttccactt ttagctaata
      961 aattgtctct taatcctgct acaaatctaa tttatataac aaatacagtt gcaaatggtg
     1021 ttttggtaat cgatggtaaa actgataggg tagttgtcca attattcgta gaaatgaacc
     1081 cagaaaatgc aggaaccata gaatgcaaca atacaaaggt acccactcaa agtttttggt
     1141 tgtatcctat aaatactgaa ataaaatgta ctgcacatgc atctagagga tactcattcg
     1201 atttttggtc aaatatgatc tcagataata aaaaccctat aacactaaac gtaactgata
     1261 ataatttact agtagctaat ttcaaaccgg ctatatcaac tgagacatat attggaatgg
     1321 tagctgctat aattggttct acttcaatat ttgcaggttg gtattataaa agaagagaaa
     1381 gaagttatct aaataccagc atgaatagaa tagacttcac ttatgacgcc ttaaaaaaag
     1441 acaggttaga aggagttaaa caattggaag agatacgaaa agaaataaca aatttattta
     1501 aaaaaggaaa gttaacagat tcacattata atattcttga taaaagaatc accgagttaa
     1561 ttaatactct tttaagaacg gagtaatatt ttttatgtaa gacttttaat acaaaatcta
     1621 aacaatttat tttttattat agtttaaaaa tataacgtca taattttttg tttgatacta
     1681 caatctgatg aatatttatt aatagttctt gataataata atagtaagaa cgttattatt
     1741 aagctaaaga aatttatatt agagtgtgaa taaaatattt tttttaacag ttttttgctt
     1801 tgcatctttt atattgttat catttatagt aattaataag tcaaatgaca tatatattaa
     1861 tactcttata aattttgata aatctctttt tattacaata aatgaatttc atgtaaaatt
     1921 accagcggag cttgatcaat ttatgatttt gataactctt tacgggaggg aacttttttt
     1981 accatttgta cttggattga ttttcatatt tggaggtaaa gatggaaaga aagcagtagt
     2041 catagcagga atctcgattt taatactaat tcccattgtt tctataacta aagattatat
     2101 tgaaagacta agaccttttg tacctggctt ggatacacta atgtctgttg ataccagcta
     2161 ttcatttcct tctggacatt ctac
//
LOCUS       DATCMF010000235         1557 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_184128, whole genome shotgun sequence.
ACCESSION   DATCMF010000235 DATCMF010000000
VERSION     DATCMF010000235.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1557)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1557)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1557
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_184128"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..345)
                     /locus_tag="VIL14_02965"
     CDS             complement(<1..345)
                     /locus_tag="VIL14_02965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY8522698.1"
                     /translation="MINYGDKIAIGVSGGKDSLSLLLVLNHIFKRKKTNDIIAITIDE
                     GIAGYRNESLRIVKDFCSKLHVKNEIFSYKELFGIDMDESMSLRPSEKMTSCAICGTF
                     RRRAIDVAADFVG"
     gene            659..1159
                     /locus_tag="VIL14_02970"
     CDS             659..1159
                     /locus_tag="VIL14_02970"
                     /inference="COORDINATES: protein motif:HMM:NF013224.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HEY8522699.1"
                     /translation="MNIKPNLLDYINCRILDVLSKNSSLPFVELAKQIGISDATIHTR
                     VRKLLTLGIIKKFTIFVDNDLLGYDHLAFINLKIEKGRTEETTTNLMEIDEILEIHEI
                     YDKFDLLIKIRSKNLDNLRDIIVNKILSINYVKETELMTVLRTRKEEQMISLQKEMSE
                     KTKEFF"
     gene            complement(1170..1406)
                     /locus_tag="VIL14_02975"
     CDS             complement(1170..1406)
                     /locus_tag="VIL14_02975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="TFIIB-type zinc ribbon-containing protein"
                     /protein_id="HEY8522700.1"
                     /translation="MYIFKTELVKFCPECGGDLKMDSATRNFICKSCGLYASRDKIEE
                     LKDKSQISSSDSKERTHADYLDWWQSSKKEKQRN"
BASE COUNT          584 a          216 c          204 g          553 t
ORIGIN      
        1 tcccacaaaa tctgcagcta catctatagc tcttctccta aatgttccac atatagcgca
       61 ggaagtcatt ttttctgaag ggcgtagcga cattgattca tccatatcaa ttccaaaaag
      121 ttctttataa ctaaagattt catttttgac atgaagttta gaacaaaagt ctttaactat
      181 tctcaatgat tcattcctat atccagcaat tccttcatct attgtaattg caataatatc
      241 attagttttc tttcttttaa atatatgatt taaaactaac agtaaggaaa gactgtcttt
      301 gccgcctgaa acaccaattg caattttatc tccatagtta atcattgaaa attttgaaat
      361 agttctacag gttttttctt caattgaaat tataaaacaa gatctacaaa gaaattcacc
      421 tgaatattgt cgaaaatata tactctctat cttttgacat tttgaacata gtgaacgttg
      481 catttatatg acaaattttt tattatttga taggtattta atttaaacta gactttcaaa
      541 actattgtct attaatgtct ctattttaat ttacaatgtg aatgtatata gattactcat
      601 atctttaaac atggattgaa tcagtattaa tatattttag taatagaatt gaagaattat
      661 gaatatcaaa ccaaatttat tagattatat taactgtagg attttggatg ttttgagtaa
      721 aaattcatca ttaccatttg ttgaactagc taaacagatt ggcatttcag atgcaactat
      781 tcatacgaga gtcagaaaac tactgacttt gggtattata aaaaaattca ctatttttgt
      841 agataatgat ttgcttggat acgaccatct agcatttatt aatttaaaaa ttgagaaggg
      901 aagaacagag gaaacaacaa caaatcttat ggaaattgat gaaattttag aaatacatga
      961 aatttatgac aaatttgatt tgctaattaa aattcgatca aaaaatttgg acaacctcag
     1021 agatataatt gtgaataaaa tattatcaat taattacgta aaggaaacag agttaatgac
     1081 agttttaaga actagaaaag aagaacagat gatctcatta caaaaagaaa tgagcgaaaa
     1141 aaccaaagaa ttcttttaat attgaaaaac taatttcttt gtttttcttt ttttgaggat
     1201 tgccaccaat ctaaataatc ggcatgggtt ctttctttag agtcagaaga actaatttgt
     1261 gatttgtctt ttaattcctc aattttgtct cttgaagcat agaggccaca acttttgcaa
     1321 ataaaatttc ttgtagctga atccattttt aaatctccac cacattcagg acaaaatttt
     1381 accaattcag ttttaaatat atacaatccc tataaaagca ttatgagaag atattacaca
     1441 aagctttctg gtagttcact aataaaaata aggagaataa tcagaattca aaatatgaga
     1501 tgaaattaaa gatataatta ttttgtcctc aaacgaatat atattattta tgaagta
//
LOCUS       DATCMF010000236         2838 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_56100, whole genome shotgun sequence.
ACCESSION   DATCMF010000236 DATCMF010000000
VERSION     DATCMF010000236.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2838)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2838)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2838
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_56100"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1442)
                     /locus_tag="VIL14_02980"
     CDS             complement(<1..1442)
                     /locus_tag="VIL14_02980"
                     /inference="COORDINATES: protein motif:HMM:NF014763.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEY8522701.1"
                     /translation="MTSEGDFFSRKRKEIGIVSVIARIISSFSLFFYQQNITEQNVKN
                     SIFAQYKDRQIESTLAISEHISSDLKLLKSILQGIADSSLLQQGLLYGDRIDKMMQER
                     FSEVNNVTKVDTLFITDKDDIVSYEIVSEGTRRFINIDLSFREYIQETKNTLRSTFSD
                     GFKGIDNIERIALAVPIVNSSSGEFMGIVGVKIPTESFFSLYGNIQDINSQFLVVSDK
                     KGTLLAVGADKSLVGKNFFGEFVQNFTNHNPILMNLTQNLLQGIPGDAIYDYGRGERL
                     TTNAPVFIQGKPLYFIQLVTPTTTIYSEINNVLFEEKLTMFSLIGGIIVAITALIIVL
                     IKWNSILNNEVKKRTKELQESNREIALANEELKVHDKMQKEFINVAAHELRTPIMPII
                     GLSELLYNKFVNKNENNLKQETLKEYLQTLVRNAYRLQKLVEDILDVTKIESRIFKLN
                     TELFELNEVISNVVTDFENIIKNKNSKVQIL"
     gene            complement(1508..2614)
                     /locus_tag="VIL14_02985"
     CDS             complement(1508..2614)
                     /locus_tag="VIL14_02985"
                     /inference="COORDINATES: protein motif:HMM:NF014647.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BMP family protein"
                     /protein_id="HEY8522702.1"
                     /translation="MIFKEKEEKCLFILTIAITLVSGPLLLSSSSYAFSDINTIEQTT
                     TTHELYEKNNSNIKDLKIALLTDGLFSDTGWGAFAYNAAHSLEIKYGYDIDFKENVAI
                     PDIEVILREYANAGFDLIIAHGFEWGTPAIKVAKDYPSINFVIFTGLVKATNVASISP
                     MQQEATYLLGALAAMMSKTNVIGFVGGEKYPNLINIFEGYKQGAHDINNNITVLATYL
                     DEWDSPAKGKEAALSQIRDGADFLLQVADTSGLGVIEAAKEKKIFVFGAISDQYKLAP
                     NTVLTSFVLDEEKAFDQVIKMIQNSNFTGTIFKPGLEPYKGAPGDGIVYIAPFYGLEN
                     QIPEDVKTKFNTIKESIIKKKILIPERYDIAKVD"
BASE COUNT          910 a          483 c          359 g         1086 t
ORIGIN      
        1 agtatctgga ctttactatt tttattcttt ataatattct caaagtctgt gacaacattt
       61 gatataactt catttaattc aaataattct gtatttaatt taaagattcg actttcaatc
      121 tttgtaacat ctagtatatc ctcaacaagt ttttgtaatc tgtaagcatt tcttactagg
      181 gtttgaagat attctttaag tgtttcttgt tttaaattat tttcattttt atttacaaat
      241 ttattgtaaa gtaattcact aagacctata ataggcataa taggagttct aagttcatga
      301 gctgctacat tgataaattc tttttgcatt ttatcatgaa cttttagttc ttcatttgct
      361 aatgcaattt ctctatttga ttcttgtagt tcttttgttc ttttctttac ttcattatta
      421 aggatgctat tccattttat taggactatt ataagagcag ttattgcaac aatgatacca
      481 ccaattaatg agaacattgt tagcttctct tcaaacaaca cattattaat ttctgaataa
      541 attgtggtag taggagtaac taattgaata aaatataaag gcttaccttg aataaagaca
      601 ggagcattag tagttaatcg ttcgcccctt ccataatcat aaattgcatc tcctggaata
      661 ccttgtaata gattttgtgt aagattcatc aaaatgggat tatgatttgt aaagttttgt
      721 acaaattcac caaaaaaatt ctttcccacc aaacttttat ctgcaccaac agcaagtaaa
      781 gttcctttct tatcagacac aactaagaat tgagaattaa tatcttgtat atttccataa
      841 agtgaaaaaa aagattcggt aggtattttt acaccaacta ttcccataaa ttctccacta
      901 ctactattta ctattggaac agctaatgca attctttcta tattatcaat tcctttaaat
      961 ccatctgaaa aagttgatct tagggtattt tttgtttcct gtatatactc tctaaatgaa
     1021 agatctatat ttataaaacg tcttgtacct tctgaaacga tttcataact aacaatatca
     1081 tctttatctg taatgaagag tgtatctact tttgtcacat tattaacttc agaaaatctt
     1141 tcttgcatca tcttatcaat tctatcgcca taaagaagac cttgctgtaa aagactagaa
     1201 tctgcaattc cttgaagtat cgatttaagt aatttaagat ctgagctaat atgttctgat
     1261 atcgctagag tagattctat ttgacgatct ttatattggg caaatatact atttttaaca
     1321 ttttgttctg ttatattctg ttgataaaaa aataaactaa atgaagagat tattcttgct
     1381 attacagaga caattcctat ttcctttctc tttctagaaa agaaatcgcc ttcacttgtt
     1441 attacgtatt acgcccccct ttaatattat ttacagatag tattttaaat ccctttttta
     1501 ctctttacta atcaactttg gctatgtcat atctctctgg aattagaatt tttttcttaa
     1561 ttatactctc tttaatagta ttaaatttag tctttacgtc ttcaggaatc tgattctcta
     1621 acccataaaa gggagctata tagactatcc cgtcccctgg tgctccctta taaggttcta
     1681 agccaggttt gaatattgta ccagtaaagt tactattttg aatcatttta ataacttgat
     1741 caaatgcctt ttcttcatcc aatacaaatg atgttagaac agtatttggt gcgagtttat
     1801 actgatcaga aatagcacca aatacaaata tctttttttc tttggctgct tctataacac
     1861 ccaaaccaga tgtatctgct acttgtaata aaaagtcagc accatccctg atttgagata
     1921 aagcagcttc ttttccttta gctggactat cccactcatc taaatatgtt gctaatactg
     1981 ttatgttatt atttatatca tgagcgcctt gcttataacc ttcaaaaata ttaattagat
     2041 tagggtattt ttctcctcct acaaatccaa taacatttgt tttagacatc attgctgcaa
     2101 gtgctcctaa tagatatgtt gcttcttgtt gcattggaga aatagaagcg acattagtag
     2161 cttttacaag tcctgtaaaa attacaaaat tgatactagg atagtctttg gctactttta
     2221 tagcaggtgt cccccattca aaaccatgag ctataatcaa atcaaaccca gcattagcat
     2281 attctcttaa tataacctcg atatctggaa tagctacatt ttctttaaaa tcaatatcat
     2341 aaccatattt tatctctaag gagtgtgctg cattatatgc aaaagcaccc caacctgtat
     2401 cactaaataa tccatcagtt agtaatgcta ttttgagatc ctttatatta gaattatttt
     2461 tctcatataa ttcatgagta gttgttgttt gttcaatagt gtttatatca gaaaaagcgt
     2521 atgaggatga actaagtagt aatggtccac ttactaatgt aattgctata gtgagaatga
     2581 aaagacattt ctcctccttt tctttgaata tcataaaaat ccctaaaatt attattataa
     2641 taatctatta aaattatcta tacctccttg tgtattttta cttttaaagt gatctttatt
     2701 tagatttaaa accatataaa atattaaaag gcaatttttt gaacttctat aacatcatcc
     2761 tctatgctaa taccaaattt tacctaactt tataactact tgagtcgagc gccgggaatg
     2821 ggactcgaac ctcgaagc
//
LOCUS       DATCMF010000237         1510 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_184349, whole genome shotgun sequence.
ACCESSION   DATCMF010000237 DATCMF010000000
VERSION     DATCMF010000237.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1510)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1510)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1510
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_184349"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..820
                     /locus_tag="VIL14_02990"
     CDS             <1..820
                     /locus_tag="VIL14_02990"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY8522703.1"
                     /translation="VSSNLGFIVGPALAGILGATIYQEILPVLAALFLSLLTLIVIGF
                     ALKESKPQLVVVTEQIPEKESIRKVFAQECKECYHAPNPKKLRFKDVFKLKHISFLII
                     LYFFIFLGFNIFYTSFPIHTVNNLKWSVTELGIFYAVLSGIMVLVQGPVLRKALKKFS
                     EEKLVIIGSIILGTNFILFVSNNNIFIYGAAVLFAVGNGLMWPSFLSILSKTAGNAYQ
                     GFIQGVASSFGSLASIVGLIIGGLLYNLIGGFTFLISAGIIFVVFIMSFKLLKL"
     gene            complement(1032..>1510)
                     /locus_tag="VIL14_02995"
     CDS             complement(1032..>1510)
                     /locus_tag="VIL14_02995"
                     /EC_number="4.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_function: GO:0016849 - phosphorus-oxygen lyase activity
                     [Evidence IEA];
                     GO_function: GO:0032555 - purine ribonucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HEY8522704.1"
                     /translation="GILDKFIGDGVFAYFGYQDKKFDIVHSKAMNAALEFKVNFIKIK
                     EKHMKILYSHYDYKPTTNINLKCAMHIGQVLFGYWYSPLRTQITAIGDDINFCSRLEG
                     FAEKDQIIISKELNNEMRKITNNNNTFRTKKIKISEDKKLKTYEHVHYVYELIGKK"
BASE COUNT          496 a          224 c          214 g          576 t
ORIGIN      
        1 agtatcttct aatcttggtt ttatcgttgg acctgcatta gcaggaattt taggtgcaac
       61 tatttatcaa gaaatattac ctgttcttgc agcacttttt ctatctttac taacactaat
      121 tgtaataggt ttcgctttaa aagaatccaa acctcaattg gtggttgtta cggaacaaat
      181 tccagaaaaa gaaagtatta gaaaagtttt tgcccaagaa tgcaaagaat gttaccatgc
      241 tccaaatcca aaaaaactta gatttaaaga tgttttcaaa ctaaaacaca tttcatttct
      301 aataatcttg tattttttta tttttcttgg atttaacatc ttttatactt cttttccaat
      361 tcatacagta aataatttaa aatggtccgt aacagaactg ggaatatttt atgcagtatt
      421 aagtggaatc atggttttgg ttcaagggcc agttttacgt aaagctttaa aaaaattctc
      481 tgaagaaaaa ttagttatca ttggaagtat aatattagga acaaatttta ttttatttgt
      541 atcaaataat aatatcttta tttatggagc tgcagttctg tttgcagttg gaaatggatt
      601 gatgtggcca tctttcctgt caatactttc aaagaccgct ggtaatgcct atcaaggatt
      661 tatacagggt gttgcaagta gttttgggag tcttgcaagc attgttggac taataatagg
      721 aggacttttg tataatttaa ttggaggatt tacttttcta attagtgctg gtattatatt
      781 cgtagttttt atcatgtctt ttaaattatt aaaactgtga tcctcgacaa agtgacagtc
      841 aagctctaat aacaatctgt tataagattg atcctaattt atcttatgaa ttcgaacaaa
      901 gaggactctt actttaatga accaattgaa aaagattcat gcatgtaaat ctaccatcaa
      961 ggaactctta acattcttat cgtgttatga ttatttgtca ctgatagaaa atctttcgat
     1021 ctagaacatg actatttttt gcctattaac tcataaacat aatgaacatg ttcataagtt
     1081 ttcaatttct tatcttctga tatttttatt tttttagttc taaatgtatt attattgttg
     1141 gttatctttc tcatttcatt attcaactct tttgaaataa taatttgatc tttttcggcg
     1201 aaaccttcaa gtctactaca gaaattaata tcatctccaa tagcagtaat ctgagttctt
     1261 aggggagaat accaatatcc aaacagaact tgaccaatat gcatagcaca tttcaaattt
     1321 atattggtag taggcttgta atcataatga gaatataaaa ttttcatatg tttttccttg
     1381 atttttataa aattcacctt aaattctaat gcagcattca ttgcttttga atgaactata
     1441 tcaaattttt tatcttggta accgaaataa gcaaaaactc catcacctat aaatttatcc
     1501 aaaattccat
//
LOCUS       DATCMF010000238         1684 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_562258, whole genome shotgun sequence.
ACCESSION   DATCMF010000238 DATCMF010000000
VERSION     DATCMF010000238.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1684)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1684)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1684
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_562258"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(322..>1684)
                     /locus_tag="VIL14_03000"
     CDS             complement(322..>1684)
                     /locus_tag="VIL14_03000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522705.1"
                     /translation="VQFSNSNTEAKSLVINEENQKISLDLGTSDTPSNLIMNLNFNYN
                     ENGDRTVSLGPIVIHFVSDDSQKNNQQNKTQSSSRQSNTQSQHQDLFSQQEQQMEQRL
                     NELLGNQQNPSQNQQQRLQNNQLSQDSNALKQQIQKQVQQQEQIKKEFEKQLSSNNDF
                     LHRHQKLLENGYNVTNNILNPMSNDTGSFDIKYKNTDGKWATLQGNMKNGTITELKQQ
                     TQVRQEKLLEKLKQNTIFQQFYNQLVTKGFSQKDINFQDNENETNIILQYENQKHDNA
                     KITANFENDEIKRVKLEDNSSNSSNLLLLILSVVAIVSVISVYFVIKKFLKKKTFTIN
                     DSSPTIPKLKSFEHILESKKLISQAQQYHDKGEYKEAFGTAGKAIRLFLSYDAGFKRE
                     ITSEELIRLIQKHNYPIDAIRECFKITDLVEFAKSSATEDDFQKIISLFNKLSNKQTI
                     NKD"
BASE COUNT          529 a          203 c          248 g          704 t
ORIGIN      
        1 ttacctttgt aatgtcataa taaaaataga gaagaaagtg aaaagaaaaa ttatttaacc
       61 aaaaaatctt taactacaaa aacatatgca ttcactttta caatgaaata tataatacta
      121 aatacaaatc ctctttttag gtcaaatttg tttcacgtcc cactgacgcc attctataag
      181 tgggttcata tactttgaat ttgatattag attttgtaaa gaataaaaga agaataattg
      241 ttcaaatttc ggaaagataa cccatttaat taattggacc aagcagatat gaatataatt
      301 ttgggaaagt taatttttaa tctaatcttt attgatggtt tgtttatttg ataacttatt
      361 aaataatgat ataatttttt gaaaatcatc ttcggtagca ctagatttag caaattctac
      421 tagatcagta attttaaagc attctctaat agcatctata ggataattat gtttttgtat
      481 taatcttatt aattcttcac tagttatttc tcttttaaaa cctgcatcat agcttaaaaa
      541 taatctaatt gctttcccgg cagttccaaa agcttccttg tattctcctt tatcatgata
      601 ctgttgagct tgagatatta atttttttga ttcaagaata tgttcaaagg attttaattt
      661 tggaattgtt ggagatgaat cattaatagt aaatgttttt ttctttaaga attttttaat
      721 tacaaaataa acagatatta cagatacaat agccacaacc gatagtatta acaaaagcag
      781 attagatgag ttagaactgt tatcttctaa tttaacacgc ttaatctcat cattttcaaa
      841 atttgctgtg atttttgcat tatcgtgttt ttgattctca tattgaagta ttatattagt
      901 ttcattttca ttgtcttgaa aattgatatc cttttgagaa aatccttttg tgactaactg
      961 attataaaat tgttgaaata tggtattttg ttttaatttt tctaaaagtt tttcttgtcg
     1021 aacttgtgtt tgttgtttga gctcagttat tgttccattt ttcatatttc cttgtaatgt
     1081 agcccatttt ccatctgtat ttttgtattt tatatcaaaa ctgccagtat cattagacat
     1141 aggattcaaa atattgttag taacattata accattttct aagagttttt ggtgtctatg
     1201 tagaaaatca ttattagaag atagttgctt ttcaaactct ttttttattt gttcttgttg
     1261 ttgtacctgt ttttgtattt gttgttttaa tgcattgcta tcttgagata attggttgtt
     1321 ttgaagacgt tgttgctgat tttgcgatgg attttgttga tttcctagta gttcatttag
     1381 tctttgttcc atctgttgtt cttgttgaga aaataaatct tgatgctgag attgggtatt
     1441 ggattgacga gaagagcttt gtgttttatt ttgttgatta tttttttgag aatcatcaga
     1501 tacaaagtga atgactatag gacctagaga aacagttcga tcgccgtttt cattataatt
     1561 aaaatttaga ttcatgatta aattagaagg agtatcagac gtacctaaat ccaaagaaat
     1621 tttttggttt tcttcgttta ttacaagaga ttttgcttct gtattagaat ttgagaattg
     1681 aaca
//
LOCUS       DATCMF010000239         4393 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_562323, whole genome shotgun sequence.
ACCESSION   DATCMF010000239 DATCMF010000000
VERSION     DATCMF010000239.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4393)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4393)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4393
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_562323"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            120..323
                     /locus_tag="VIL14_03005"
     CDS             120..323
                     /locus_tag="VIL14_03005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522706.1"
                     /translation="MSDKEKTTKKSLDSHTSFEDYKNDVGKLKKIAEQVAFTIIYQAI
                     RYNRLEEYKKVILQLSTSNMERG"
     gene            796..2247
                     /locus_tag="VIL14_03010"
     CDS             796..2247
                     /locus_tag="VIL14_03010"
                     /inference="COORDINATES: protein motif:HMM:NF016994.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="erythromycin esterase family protein"
                     /protein_id="HEY8522707.1"
                     /translation="MEKDIENFHRLERSKDLDILLDRIGDSQFVLLGEASHGTSEFYR
                     WRTEITKRLINEKGFSFIAVEGDWPDCYKVNSYIKGFPDSGKNSYDILHSFNRWPTWM
                     WANKEMVELVEWLKLYNDKQQHQQEQKNKSFTSNSNKKIVGFYGLDLYSLWESMEAIL
                     QYLKKVDPNAIKDAIEAYNCFEPYRKDVENYARATAFVPENCEDEVIEMLTSLRSKMD
                     VYSKKDHGNREEEYFNAEQNAITAKSAELYYRTMIKGDVNSWNIRDTHMMDTLERLIS
                     FHGEGNSKAIIWAHNTHIGDARATDMSKDNMINLGQLVRERKNNNNTVLVGFGTYNGT
                     VIAAKRWGDKMEEMKVPAATDGSWDHILHNLKNDSIASSYTNDKVIIFTRDDDCNIDN
                     KINDNSSNKINNDKWRGQRAIGVVYNPQYEKYGNYVPTLLHLRYDTFLFIDETHALHP
                     LDISTIDDKDFPETFPTGIAKKLKEEEELIFLL"
     gene            2533..2718
                     /locus_tag="VIL14_03015"
     CDS             2533..2718
                     /locus_tag="VIL14_03015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522708.1"
                     /translation="MSNNTINEDTCYYATYSKIKGNPTEKECSNPATRHIENKTTSQE
                     FPVCEEHYQLVSKESES"
     gene            complement(3097..3240)
                     /locus_tag="VIL14_03020"
     CDS             complement(3097..3240)
                     /locus_tag="VIL14_03020"
                     /inference="COORDINATES: protein motif:HMM:NF016811.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YHS domain-containing protein"
                     /protein_id="HEY8522709.1"
                     /translation="MAKDPVCGMNVDESKAQYTSEVNGQKVYLCREQCKREFDQNPQK
                     YGY"
     gene            3902..4225
                     /locus_tag="VIL14_03025"
     CDS             3902..4225
                     /locus_tag="VIL14_03025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522710.1"
                     /translation="MYHRELTGEQKVKVSELLSSVIIDKQHSHERDLRNASVVLYELN
                     RLGFTIVDLDIDEILSISDENYSSTIKQQLKNMANSYSRLVEGMKNTDESDILIKKVD
                     SIFKS"
BASE COUNT         1742 a          530 c          667 g         1454 t
ORIGIN      
        1 taaaaatata tgagaatata tttatttgtt ataaattaac aaattcttcc tattttgtga
       61 ttttcttttt taaggataat gataatttgt aacatatttg tattatatac tataataata
      121 tgagtgacaa ggagaagaca acaaaaaaga gtttggatag tcatacatct tttgaagatt
      181 ataagaatga tgttggaaaa ttaaagaaaa ttgcagagca ggttgctttt actataatat
      241 accaagcaat aagatataac agattagagg aatacaaaaa agtaatctta caattgtcta
      301 catccaatat ggaaagaggc tgaagaaata ttttggtaat agatcctgct attaaaataa
      361 aaaaagataa aatgtcaaaa tcaaagaatt aataaatcta aataataata tcaagtggaa
      421 aagtaatata tgccatttga tgatagtatt tgaaaatatc acattgaaac ctaaatcatg
      481 ttcatcaact aataaatttc aaaagaatga aaggaagaat tatattccag taaataaaga
      541 agattctcca caaataataa agatgtgttg ttcttcattg cataacatgg attttatggt
      601 aaaaaatata cacaaacgct ggagtataat tgactaataa taatacaatt aatctttagt
      661 ttaaacctga atgatagtag gttatgattt tcttaatctg gtttaataat ctattaagct
      721 ttaataaata aaaaaaatat aatgcagttt tatagtttat tttacaaaat atatatagtg
      781 ggaaacaaca gcataatgga aaaagatata gaaaattttc atagacttga aagatctaaa
      841 gatcttgata tattattaga tagaataggt gattcacaat ttgtattact aggtgaagca
      901 tctcatggta cttctgaatt ttatagatgg cggactgaga ttactaagcg tcttataaat
      961 gaaaaaggat tttcttttat agcagtagaa ggtgattggc cggattgcta taaggttaat
     1021 agttatatca aaggattccc tgactctggt aaaaattcat acgatatttt acattccttt
     1081 aatcgttggc ctacatggat gtgggcaaat aaagagatgg tagaattggt ggaatggctt
     1141 aaattatata atgataaaca acaacatcaa caagaacaaa aaaataagtc atttacttct
     1201 aattccaata aaaaaattgt tggattttat ggtcttgatc tctatagcct ctgggaatct
     1261 atggaagcaa tcttacaata tctaaaaaaa gttgatccca atgcaataaa agatgctatt
     1321 gaagcctaca actgctttga gccttaccga aaagatgtag aaaattatgc tagggcaact
     1381 gcatttgttc ctgaaaattg tgaagatgaa gttattgaaa tgttaacatc tttacgtagc
     1441 aagatggatg tttatagtaa aaaagatcat ggaaatagag aggaagaata ttttaatgca
     1501 gaacaaaatg ccattacagc aaagagtgca gaactatatt accgtaccat gattaaaggt
     1561 gacgtaaatt catggaatat acgtgatact catatgatgg atacccttga acgcttaata
     1621 tcatttcatg gtgaaggtaa ctcaaaagca ataatttggg ctcataatac acatattgga
     1681 gatgcaagag caacagatat gtctaaagac aatatgatta atttaggaca attagtacgt
     1741 gaacgaaaaa ataataataa tacagtattg gttggatttg gaacatataa tggaaccgta
     1801 atagctgcaa aaagatgggg agataaaatg gaggaaatga aagtaccagc tgcaacagat
     1861 ggaagttggg atcatatcct tcataatctc aagaacgatt ctattgctag ttcttatact
     1921 aatgacaaag taattatttt cactcgtgat gatgattgta atattgataa caaaataaat
     1981 gataatagca gtaataaaat aaataatgat aaatggagag gtcaaagagc aataggtgtt
     2041 gtgtacaatc cacaatacga aaaatatgga aattatgttc caactctctt gcatttaaga
     2101 tatgatactt ttttatttat tgatgaaact catgcattac atcctttaga tatatcgact
     2161 atagatgata aagattttcc agaaactttc cctactggta tagcaaaaaa actaaaagaa
     2221 gaagaagaat taatattttt attataattt caatttttat ttttatagtt gatagtattc
     2281 gttattatac aatgacaaat aatagtgata gttataatat tagaggtaaa agaagagtat
     2341 cagttaataa ataatatcaa tggcatattt tggaagtttt aaagatatta gtttcaataa
     2401 atacaaataa tctaatagag catactaaaa ataataaaag taaaaagact gaatagcagt
     2461 cgttagtagt agttaagact gaataaaata ttggcaagga tataaataca atttgttcct
     2521 cataaagaag taatgagtaa caacactata aatgaagata cttgttatta cgcaacttat
     2581 tccaaaataa aaggtaatcc aacagagaaa gaatgttcta atcctgctac aagacatatt
     2641 gaaaataaga ctacttctca agaatttcct gtatgtgaag aacattatca actggtatca
     2701 aaggaatcag aatcttaaat acaaaatcct aaatattgct atcattaggt attcttgatc
     2761 tttagcattc atcaataaga agatcaatat atagaaaaaa ttatcaagta aaaatgtctt
     2821 taattatccg ttatagtctc gcatatctag acctataaat ccgaagaatc gtgttggttt
     2881 aggctatgtc ttcttttacc aaaaagttat cctcaattat taaatatttt atttactatt
     2941 tattcatgca gaaggaggga tgtaaatctc aaatactgta tagatgttga gattgctgat
     3001 ttacctcatc gtctcaacat ctatttttca atgctatata gttaataaga aaatatttgt
     3061 tggaaatttt ttgttattta ataacttttt tttctattag tatccatact tttgaggatt
     3121 ttggtcaaac tctcttttac attgttctct acataaatac actttttgtc catttacttc
     3181 ggaagtatat tgtgcttttg attcatctac attcattcca catactggat cttttgccat
     3241 tagaagtgat tatacatcaa agaatttaat aatttataaa attattaata aatatattat
     3301 tatggttaaa aatattatga ttgacaaatg taaatacaaa ttaatcataa aatatcacat
     3361 ctaatcgatg aatatcatga tttaatccaa taagaataaa aaatgataaa gatataaaaa
     3421 ttgaaacaga taaggaagta gaattagata gaagcagaaa aaagcgaagg atgagtttta
     3481 gattaagttt atttactaat caatataata tttctttcaa catgtttcca tatacctacc
     3541 aattgtacgc taatagtgtg taagacatag aatataatat agaatataat gccctgctag
     3601 ttaatccata acttaaatag attgatttta tttacttaat aaagccagaa atatagtatt
     3661 tgaatgagaa tccacaactt aaccagatcc ttaggtaaac tcaaattgtt gtcgttgtag
     3721 ttaaccaaag gtaatgtatg ttatagtcgg cactcccgct ggttacagta tttaagtcaa
     3781 aaagtactcc tgttttagtc attaaaaata cgatttttat aaataacaaa tcaaaagaag
     3841 acaatataca agagatagca atgcagttat actcttattc agctttatag aaatcacaaa
     3901 tatgtatcac agagaattaa ctggagaaca aaaagtaaaa gtttcagagc tgctatcatc
     3961 ggttataata gacaaacaac attctcatga gcgagatctt cgtaatgctt cggtagttct
     4021 atatgagctt aacagattgg gctttacaat tgtggacttg gatatagatg aaatactaag
     4081 tatatcagac gaaaactatt caagtacaat caagcaacaa ctgaaaaaca tggctaattc
     4141 ttattcaaga cttgttgagg gtatgaaaaa tactgatgaa agtgatattt taataaagaa
     4201 ggtagattca atttttaagt cttgaatatt tctagtgaag aaaaacaata ttctttctat
     4261 ttttgttttt ttatcatctc ttttctcatc tttttgataa ttttttattt ctaatttggt
     4321 aaattcttta gtgtctttaa ctaataataa agaaattaaa aatccaacta ttggaaatat
     4381 aattccaagg taa
//
LOCUS       DATCMF010000240         2212 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_56401, whole genome shotgun sequence.
ACCESSION   DATCMF010000240 DATCMF010000000
VERSION     DATCMF010000240.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2212)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2212)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2212
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_56401"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(152..475)
                     /locus_tag="VIL14_03030"
     CDS             complement(152..475)
                     /locus_tag="VIL14_03030"
                     /inference="COORDINATES: protein motif:HMM:NF015268.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522711.1"
                     /translation="MGGVKKKTLSSTKATGQQPSDGTNKPKKDETKPQIKSQKHKSSV
                     LIEDINDVSILRGMKAITVQSISKVLGVKISIANNYIRNLESKGTVKFIGGYSGHKVY
                     SFNNS"
     gene            572..>2212
                     /locus_tag="VIL14_03035"
     CDS             572..>2212
                     /locus_tag="VIL14_03035"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA ligase"
                     /protein_id="HEY8522712.1"
                     /translation="MDFLTIAEIFEEMHKTNSRLVLIDHLVTLFKSTPVNTIKKIIYL
                     LQGKLSPASEGIELGLGEKLTIRAIAEASGISVKEVEEKYGKIGDLGETAKEIAKKKY
                     QQTLLSEKITIERIYSTFEKIAKSLGSQSQIIKLRLVSSLLNDATPLESKYIIKFLLG
                     NLRLGIAEYSIIDALAIAFTGNRNNRKRIEETYNIYTDLGTIAEILFKKEVEGLNELQ
                     ITPLKPIRPMLAERITDPTEGLKKANGMIAFEYKLDGERVQIHKYDTEVQLFSRSLEK
                     ITNHYPDIVDAIKKFSIHNCILEAEIVPLDLVTKKIQPFQELMHRKRKYNINDVILKY
                     PIKVFLFDILYLEGNNLTQYEYTTRRAILKSTIEKNKNNTIELVKQIVSSKLNQIEIF
                     FRKAKDDGCEGLMLKQLNSKYRAGAREFLWMKLKKEYDNTFGDSFDLTVIGALLGKGK
                     RTGYYGALLLAAYDKKSDTFQSICKVGTGFSDYDLELIYNELKNYVVDKKYYNVNTNL
                     KMDIWFTPKLVIEIIASEITLSPLHTAAYGLIKENFGVA"
BASE COUNT          837 a          327 c          346 g          702 t
ORIGIN      
        1 ttttcctcaa agatgccaat gtctcgtatt ctatgaacct cattggtaaa ataacttcaa
       61 ctattgaaga actcattaat ttaaagcctg tagacgtact aactataaac acgtgaattg
      121 acagagttag acaatacaat aaagaaattc gttaactatt attaaaagag taaactttat
      181 gtccactata acctccaatg aattttactg ttccttttga ttccaaattt ctaatataat
      241 tatttgcgat tgatattttt actcccagga cttttgatat agattgtaca gtaattgcct
      301 tcattcctct tagtatactt acatcattga tatcttctat taatacagaa gatttatgtt
      361 tttgactttt gatttgaggc ttcgtttcat ccttctttgg tttgttagtt ccatcgcttg
      421 gttgttgtcc tgtagcttta gttgaactta gtgtcttttt ctttacgcca cccatatcga
      481 tttctttata tctttttagt tatatacttt atacttgttt atcaaaattc aaatcatatt
      541 ttataaataa tgaactttat aagaataatt attggatttt ttaactatag cagaaatttt
      601 tgaagaaatg cacaagacta atagcagact agtattaata gatcacttag taactctttt
      661 taaaagcact ccagttaata ccatcaaaaa aataatttat ctccttcaag gaaaactttc
      721 tccagcctct gaaggaattg aattaggatt aggagaaaaa ttaaccatta gagctatagc
      781 agaagcttca ggaattagtg tgaaagaagt cgaagagaaa tatggcaaaa taggagattt
      841 aggagaaaca gcaaaagaaa ttgcaaaaaa aaaatatcaa cagactctcc taagcgaaaa
      901 aattactata gaaagaatat actcaacctt cgaaaaaata gcaaaatcac taggatcaca
      961 atctcaaatt attaaacttc gtctcgttag tagcttattg aatgatgcaa caccattaga
     1021 aagtaaatat atcataaaat ttctcctagg taatttgaga ctaggcatag ctgaatattc
     1081 tatcattgat gctttggcaa tagcctttac aggaaataga aacaaccgta aaaggataga
     1141 agaaacttat aatatctata ctgatctagg aacaattgca gaaatattat ttaaaaaaga
     1201 ggtagaaggt ttaaatgaat tacaaataac accactaaaa cctattcgac caatgctagc
     1261 cgaaagaatt acggatccga cagaaggatt gaaaaaagcg aatggcatga tagcttttga
     1321 atataaactc gatggtgaaa gagtccaaat ccacaaatat gatacagaag tacaattatt
     1381 ttcaagaagc ctcgagaaaa taactaacca ttatcctgat attgtggatg caataaagaa
     1441 attttcaatt cacaattgca ttttagaagc agaaatagta ccacttgact tagtgactaa
     1501 aaagattcaa ccatttcagg aattaatgca tagaaaaaga aagtataata tcaatgacgt
     1561 tatcctaaag tatccaatta aggtattcct atttgacatc ttgtatttag aaggaaacaa
     1621 tttgacgcaa tatgagtata caacaagaag agcaatttta aaatctacta ttgagaaaaa
     1681 taagaataat actatagagt tagtcaagca aattgtttca tcaaaactaa accaaatcga
     1741 gatttttttt cgtaaagcca aagatgatgg ttgtgaagga ttaatgttaa agcaattaaa
     1801 tagcaaatat cgagcaggtg caagggaatt cttatggatg aagttaaaaa aagaatacga
     1861 taacacattc ggggatagtt ttgacctcac agtaattgga gcattattag gtaaaggaaa
     1921 gcgtacaggt tactatggag ctcttttatt agctgcgtat gacaaaaagt ctgatacctt
     1981 tcaaagtatt tgtaaagtag gaactggatt ttctgactat gatctagaac ttatttataa
     2041 tgaactgaaa aactatgttg ttgataagaa gtattataat gtcaatacta atttgaaaat
     2101 ggatatatgg tttacaccga aactggttat agaaatcatc gcctctgaaa ttaccctcag
     2161 tcccttacat actgctgctt acggtttaat aaaagaaaat tttggagtag ct
//
LOCUS       DATCMF010000241         1681 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_56967, whole genome shotgun sequence.
ACCESSION   DATCMF010000241 DATCMF010000000
VERSION     DATCMF010000241.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1681)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1681)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1681
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_56967"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..168)
                     /gene="nadA"
                     /locus_tag="VIL14_03040"
     CDS             complement(<1..168)
                     /gene="nadA"
                     /locus_tag="VIL14_03040"
                     /EC_number="2.5.1.72"
                     /inference="COORDINATES: protein motif:HMM:NF014498.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008987 - quinolinate synthetase A
                     activity [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="quinolinate synthase NadA"
                     /protein_id="HEY8522713.1"
                     /translation="MSCNQCYIHSMSESTSFIKDRISNIKKEKKAVILAHNYQLPEVQ
                     EIADYVGDSLAL"
     gene            299..478
                     /locus_tag="VIL14_03045"
     CDS             299..478
                     /locus_tag="VIL14_03045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S30e"
                     /protein_id="HEY8522714.1"
                     /translation="MPTHGSLTKAGKVRGQTPKIEGRERISQISRVRNRNNFIKRFAK
                     RRSPGQRKPERTGRR"
     gene            600..1439
                     /gene="nadX"
                     /locus_tag="VIL14_03050"
     CDS             600..1439
                     /gene="nadX"
                     /locus_tag="VIL14_03050"
                     /EC_number="1.4.1.21"
                     /inference="COORDINATES: protein motif:HMM:TIGR03855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate dehydrogenase"
                     /protein_id="HEY8522715.1"
                     /translation="MQKRIGVIGCGTIGSELALAIDKSHIKNAVIVFLYDTIINASLI
                     LRDKLRNNDPSLFSKFSQLISSSSYKKADIIVEAASQSAVKIFAKKIVSSNKSLMIMS
                     TGALSNSKLLKELYAATIKHDSHIYIPTGAIAGIDAICSAKHLLDSVMLTTTKNPKAL
                     ASAPFFNLNNIKSENIKKRTLLYDGNAAAAVKMFPTNINVAVILGLAGLGTRRTRVRV
                     IADPHTNRNEHEIIAKGRFGEITIVVSNIPSRHNPRTSFLASLSAIECLRRICDDNIR
                     IGT"
     gene            1529..>1681
                     /locus_tag="VIL14_03055"
     CDS             1529..>1681
                     /locus_tag="VIL14_03055"
                     /inference="COORDINATES: protein motif:HMM:NF014047.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAM domain-containing protein"
                     /protein_id="HEY8522716.1"
                     /translation="MSDGGYRRNDNFGPKPVETGKEYDVQITEISRKGEGIARIQGFV
                     IFVKDGK"
BASE COUNT          551 a          308 c          372 g          450 t
ORIGIN      
        1 tagcgccaat gagtcgccta cgtaatcagc tatttcctgc acttctggta gttgatagtt
       61 atgtgccaga ataactgcct ttttttcttt ctttatattg gatattctat ctttgataaa
      121 tgaagtagac tctgacatcg aatgaatata gcattggttg caagacattt aaagtagtat
      181 aatcgaggtt aaccttgcct cacaattgcg cagtgcggca agtattgcca gttggcagtt
      241 aggaataaca tgagatatcg tcgaccacat atatattagg cttaaattaa gcgatcttat
      301 gccaacacat ggctccctta caaaagccgg aaaagttcga ggtcagacgc caaaaattga
      361 gggcagagaa aggatcagcc agatttcgag ggtgcgcaac agaaataatt tcattaaacg
      421 atttgcaaaa aggagatctc ctggtcaaag aaaacctgag cggacgggaa gacgatgaag
      481 tgattggatt ctagtatttt ttcggcaaga aaccgtctgg actagatcga ggatcgaaac
      541 cctcagatcc atgattgtca caaatgagac tattgtagtt cgaggaatat gaaccacaaa
      601 tgcaaaagag aataggtgtg ataggttgcg ggacaatcgg cagtgagctg gctctggcaa
      661 tagataagtc tcacattaag aacgctgtga tagttttttt gtatgacact atcataaatg
      721 cctccttaat tttgagagat aagctgcgca acaatgatcc gtccctcttt tcaaaatttt
      781 cccagctgat atcctcgtca tcatataaaa aagcagacat aatagtggaa gcagcttccc
      841 aatcagcagt caagatattt gctaaaaaaa tagtttcatc caataagagt cttatgataa
      901 tgagtacagg tgccttgtcc aactctaaat tgctaaagga gttgtatgct gctaccataa
      961 aacatgatag tcatatatat attccgaccg gcgcaattgc tgggatcgat gcgatatgca
     1021 gcgcaaagca cctccttgat tctgtgatgc tcacaaccac gaaaaacccc aaggcgcttg
     1081 cgagcgctcc atttttcaac ctaaataata tcaaatctga aaacataaaa aaaagaacat
     1141 tactatatga tggaaacgca gccgcagctg tcaagatgtt cccgacaaat ataaacgtcg
     1201 cggtgatact tggcttggcg gggcttggaa caaggagaac cagagttaga gttatcgcag
     1261 atcctcacac aaatcgaaat gaacacgaga ttattgccaa gggtaggttc ggagaaatta
     1321 cgatagtggt tagtaatata ccgagccgtc ataaccctag gacaagcttt ttggcttcat
     1381 tgtctgccat tgaatgtctt cgcagaattt gtgatgataa catcagaata ggaacatgat
     1441 tgatagcgca gactgatcct tttaatgagt gcttttcctt tgacagttta tatggggttt
     1501 tgtttttcct tggatcaagg tattaagaat gagtgatgga ggatacagaa gaaatgataa
     1561 cttcggccca aaacctgtag aaacaggaaa ggaatatgat gtgcaaataa ccgaaataag
     1621 tagaaagggc gaaggaatag caagaataca gggatttgtg atttttgtaa aggacggaaa
     1681 g
//
LOCUS       DATCMF010000242         1889 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_231574, whole genome shotgun sequence.
ACCESSION   DATCMF010000242 DATCMF010000000
VERSION     DATCMF010000242.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1889)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1889)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1889
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_231574"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(453..575)
                     /locus_tag="VIL14_03060"
     CDS             complement(453..575)
                     /locus_tag="VIL14_03060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522717.1"
                     /translation="MHAQSILGKATTYLALPAINASHPLFPLFVMLHSLATGST"
     gene            727..1635
                     /locus_tag="VIL14_03065"
     CDS             727..1635
                     /locus_tag="VIL14_03065"
                     /inference="COORDINATES: protein motif:HMM:NF012730.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005216 - monoatomic ion channel activity
                     [Evidence IEA];
                     GO_process: GO:0034220 - monoatomic ion transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ion transporter"
                     /protein_id="HEY8522718.1"
                     /translation="MPKVFMEKKSSGRGPSNVVGLSKRIVSSNTFDWIITGVILLQAI
                     ALAIEATPAILSIGKDVELLEAGTFSIIQSLVIAVFIVEAALRLIALYPRPQRYFKDP
                     WNCFDFAIIILSVIPISGQFSTIARLVRLLRITRLVTKSNELRAIVSTLVRSIPSIFN
                     ILILLSILFFIYAIVGHHLLRNADPEHWSSFPTSLITLFQIITLEGWVNIMEPIVTGL
                     GLIYWVYFASFIVIGTFIIINLFISVIVRKSEEAYKQVQRESGIPITQQEVIQEIKEI
                     RRILEELEKRIRKETGSETISQSDHL"
BASE COUNT          605 a          357 c          339 g          588 t
ORIGIN      
        1 attctaatct gcaatggagc ataacagtcc tttcataatt ctaactattt tttttggctg
       61 tcgatttctt taccactatc actatctcgt ttttacctct agcatcaagc ggacagacta
      121 atacgtcccc ttttaaaatc cattgtttaa caataaacaa ttaataaccg attattaaag
      181 gtcaggtata gtccaaattc agttcgagct gtatattaca taacttttaa ctagagcagc
      241 ataatataat gacaattttt cttctgcttc ttcgacctag attcaatact ctctgtacac
      301 ataacctgct tttctccttg gacattaagg agaaggtcta gttcctacat gtaataacat
      361 cttcattgtt gtgattggtt tctttctata aaatatcata tttgtagaga gataacagcg
      421 agggtaaaga aatgaaatga ttaagacatc aattaagtac tccccgttgc taaactatgc
      481 aacatgacga aaagaggaaa tagtggatgc gatgcattta tagcaggtaa agcgagatat
      541 gttgtcgctt tcccaagtat gctctgcgcg tgcattaatc tcttttcctc attactatta
      601 gattatggtt acgccctctc atcgatttga attatatggc tagtttaatt gatgcaagag
      661 cacctccttt gagtattacc cacaaagtag taaacaatca gatttacttt acaatagaaa
      721 atatgggtgc ctaaggtttt catggagaaa aaatcatcgg gaaggggccc gagtaatgtt
      781 gttggtcttt caaaaagaat tgtatcgagc aacacatttg actggataat aacaggagtt
      841 attctgctcc aggcaattgc tctcgccata gaagcaacgc cggctattct ctcaatagga
      901 aaagacgtgg agttacttga agcaggaaca ttcagcataa ttcaaagcct ggtaattgcc
      961 gtcttcatag ttgaagctgc actgagactg attgcactat acccacgacc acaaaggtat
     1021 ttcaaggacc catggaattg cttcgatttt gcaatcataa tactgtccgt tataccaatt
     1081 tcaggtcaat tttcaacgat agcaaggcta gtcagacttc tcaggataac gagactcgta
     1141 accaaatcca atgaactgcg ggcaattgta tctacacttg tccgctccat acctagtata
     1201 tttaacattc tgattttgct ttcaattcta ttcttcatat atgcaatagt tggacaccat
     1261 cttctcagaa acgctgatcc agaacactgg tcttcttttc ctacctcatt aataacatta
     1321 tttcaaatca ttacgcttga aggatgggtg aatataatgg aacctatagt aaccggtcta
     1381 ggacttatat attgggtata ctttgctagc tttattgtaa ttggaacttt cattattatt
     1441 aatttgttta tttctgtgat agtccggaaa tctgaagagg catataaaca ggtgcagcgc
     1501 gaatcaggta tacctataac gcaacaagag gttattcagg agattaaaga gatccgcaga
     1561 attctagaag agctagagaa aaggattcgt aaggaaacag gtagtgaaac catatcacaa
     1621 tcagatcatt tgtgatcctc tatcatcaaa aaggtaaatt agctcagcta ttactaacta
     1681 ataaatgggt gatttaggta tgaaagaata gctggcagct aaagcaaacc aattacagca
     1741 gctgctgcaa taaataaatc aatagcttgg ggttactagt tattattatt gtatgcagag
     1801 acagctttag ggattgcatc gcatgcgaca tctcttcaat caatttcata ctataaaagt
     1861 gcagccaata caactatcaa agtacttgg
//
LOCUS       DATCMF010000243         2024 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_185280, whole genome shotgun sequence.
ACCESSION   DATCMF010000243 DATCMF010000000
VERSION     DATCMF010000243.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2024)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2024)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2024
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_185280"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..924
                     /locus_tag="VIL14_03070"
     CDS             <1..924
                     /locus_tag="VIL14_03070"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY8522719.1"
                     /translation="PKILLAIEAYNLSKIYKDTRVPALDNISLKIDKGQIFTLLGRNG
                     AGKTTFVRICATQLLPTSGTLKVSGYDVINQAEHIRKFISVVPQEGRPLRALTPWDHV
                     YNWLKIRGEEKSIAKIKTEKILERFELLKVKDKPAMNLSGGMKQKILVAMATAVDVDL
                     LFLDEPTIGLDPVSRRQVWSLMQDLKKEGKTILLTTHYMDEAEILSDKIVIIDNGKIV
                     KEGNINDLRKIIPQNIRMDISKKNIDVEQLKSYGNVVEIGTDIIRLFTFESHIGELSN
                     LAIKNNISFNISPITLDDIFVYLVGNSIKNN"
     gene            complement(964..1575)
                     /locus_tag="VIL14_03075"
     CDS             complement(964..1575)
                     /locus_tag="VIL14_03075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522720.1"
                     /translation="MSNKKKKNNKDDDNKKKKSYLDISRKKRSKNLKTVILPIIAAIV
                     IIAIISMYVFSQNTLSVAGFGALGSAHEHAAFLVKVNGKNIDFSQPKYQVQSDYIHVE
                     NGDGTTLHRHATNVTFVDFLKSIKMDIDKKNNCLVFTNGTEYCDDNNNNKLRTFINGN
                     STKSISDYILNNNDRLLVIYGNETEEQIAKALDELNKIKIQFN"
BASE COUNT          760 a          250 c          288 g          726 t
ORIGIN      
        1 ccaaaaatat tgctggcaat tgaagcatat aatttatcta aaatttataa agatacgcgc
       61 gtaccagctt tagataatat atcattaaaa atcgataaag ggcaaatttt cacattatta
      121 ggaaggaacg gtgctggaaa aactacattt gtaagaattt gtgcaactca attgttacca
      181 acatctggta cgttgaaagt ttcaggttat gatgtaataa atcaagcaga acatataagg
      241 aaatttatct ctgtggttcc tcaagaagga agaccattac gagcacttac tccttgggat
      301 catgtttata attggctcaa gattagggga gaagagaagt ctattgcaaa aataaaaact
      361 gaaaaaatat tagaaagatt tgaattactt aaagtaaaag ataaacctgc aatgaatttg
      421 tctggaggaa tgaaacaaaa gattttagta gcaatggcta ctgctgttga tgtagattta
      481 ttatttctgg atgaacctac aattggtcta gatccagttt caagacggca agtttggagc
      541 ttaatgcaag atttgaaaaa agaaggtaaa actatattac ttacaactca ttatatggat
      601 gaagcagaaa tattatctga taaaatagtt ataatagata atggtaaaat tgtaaaagag
      661 ggaaatatta atgatttacg aaaaataatt ccccaaaata ttcgtatgga tatatccaaa
      721 aaaaatattg atgttgaaca attgaaaagt tatggaaatg tagtagaaat aggcacagat
      781 attattaggt tatttacctt tgaatctcac ataggtgaat tatctaacct agctataaaa
      841 aataacatat cctttaatat atcacctata acacttgatg atatatttgt atatttagta
      901 ggaaattcta taaaaaataa ttaaagagat attaaaaaga ttagggatag ttaaaaagaa
      961 aatttaattg aattgaattt taatcttatt taattcgtct aatgctttag caatctgttc
     1021 ctcagtttca ttaccataaa tcactaacaa acgatcatta ttattaagaa tataatctga
     1081 aatagactta gttgaatttc cattgatgaa tgttctcagt ttgttattat tattatcatc
     1141 gcaatattct gttccattag taaagaccag acaattattt ttcttgtcta tatccatttt
     1201 gatacttttt aaaaaatcca caaaagtaac atttgttgca tgtctatgta gtgtagtgcc
     1261 atcaccgttt tcaacatgaa tataatcaga ttgtacttgg tattttggtt gactaaaatc
     1321 tatatttttg ccatttactt taactaaaaa tgctgcatgt tcatgtgcag aacctaaagc
     1381 tccgaaaccg gcaacagata gagtattttg agaaaataca tacattgaaa ttatagcaat
     1441 aataacaatt gcagctataa ttggaagaat aactgttttt aagtttttac tccttttttt
     1501 tcttgatata tctaaatagc tctttttctt tttattatca tcatctttat tgttcttttt
     1561 ctttttgtta gacatgataa attgattgat tgaataatat tgtattatat agcactttcg
     1621 gaaacctgga actgaactgt ttttaaaaat aatattaaaa ttatactaat ttttttctaa
     1681 gaataataat acgacagtag agtctcatat ctttgatttg gatctatata ttaggaatta
     1741 aatattgata gaacattaat ccaagcaata atgtataata tcctaattct aatttttatt
     1801 tatttcaatc attcattaaa atctatataa tatttgtgtc taactacaac aaatctcctt
     1861 tcttttatga gagtaaatat atacaatatc taatgtataa agtgattatg tataatataa
     1921 tatactataa tgtaatgtaa tgtaatgtaa gcctccaata ttagaatatt tatctcaaga
     1981 tattatgtcc atgttggatt gtcaaagtca ttatcaagta agtt
//
LOCUS       DATCMF010000244         1594 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_364896, whole genome shotgun sequence.
ACCESSION   DATCMF010000244 DATCMF010000000
VERSION     DATCMF010000244.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1594)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1594)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1594
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_364896"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1223
                     /locus_tag="VIL14_03080"
     CDS             <1..1223
                     /locus_tag="VIL14_03080"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_function: GO:0050136 - NADH dehydrogenase (quinone)
                     activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit N"
                     /protein_id="HEY8522721.1"
                     /translation="YSSYYSLILLSTIGMVLIAYATDFVMLFIAWELMSIPTYALAAF
                     SKRDPISNEAAIKYFMFGAFSSSILVLAIGFVYAVTGTTNIGDSITILAELAAPNQGS
                     DKLGGIIPISYLAIGLFVAGFGFKMGLVPFHMWLPDAYEGAPTTIGALLAAGTKKAGF
                     AAAIRVIVIGMFAVGLDWSIVLAILAVITMTVGNFGALIQRSVPRMMAYSSVAQAGYM
                     MIGLALAPYASSALDGSLFHILDHAVMKSASFLAIAAVAIALASYSLEKYSGLGRKMP
                     ITAIALSISLLALAGVPPLNGFWSKLVLFQSAIDSGTVISWGPYLAIAGLLNSALSLG
                     YYLWIIKKMYLDESGDMSRVKEPKAILCVLVFAIIFMVGFGIWHAPLLEFASISVPTN
                     IDQLVPSIGNITQN"
BASE COUNT          488 a          254 c          291 g          561 t
ORIGIN      
        1 attattcttc ctattattcc ttaattttac tatcaacaat cggaatggta ttgatagctt
       61 atgcaacaga ttttgtaatg ttgtttatcg cgtgggaact tatgtcaata cccacatacg
      121 ctcttgctgc attttctaag agagatccaa tctcaaatga agctgctata aaatatttta
      181 tgtttggagc gttctcatct tccattttag tgcttgcgat tggatttgtc tatgcagtta
      241 ctggcaccac taatattggt gattctataa caattcttgc tgaacttgca gcaccaaatc
      301 aaggttcaga taaactagga ggtattattc caatttctta tcttgccata ggtttgtttg
      361 ttgctggctt tgggtttaaa atgggtttgg taccatttca tatgtggtta ccggatgcat
      421 atgaaggtgc acctacaaca ataggtgcct tgttggctgc aggaacaaaa aaagcaggtt
      481 ttgcagcggc cattagagtc atcgtaattg gaatgttcgc agttgggttg gactggagta
      541 ttgttcttgc cattttagca gttattacta tgactgtagg taattttggg gctcttatac
      601 aaagaagcgt tcctagaatg atggcttatt ctagtgtagc ccaggcaggt tacatgatga
      661 ttggactagc actagccccc tatgcaagtt ctgctctgga cggatcactt tttcacattc
      721 ttgatcatgc tgtaatgaaa tcagcctcat ttttagctat tgctgctgtt gcaatagcat
      781 tagccagtta cagtttagaa aaatacagtg gactggggag aaaaatgccc atcaccgcaa
      841 ttgcactatc aatatcatta ttagcattag ctggtgttcc tccattgaat ggtttttgga
      901 gtaagctggt actttttcaa tctgcgatag atagtggtac agtaatctca tggggtcctt
      961 acttagctat cgctggatta ttaaatagtg cattatccct aggttattat ttatggatta
     1021 ttaaaaaaat gtaccttgat gaaagtggtg atatgtccag ggtaaaagaa cctaaggcca
     1081 ttctatgtgt attggtattt gcgattattt ttatggtagg atttggaata tggcatgcgc
     1141 cattactaga attcgcctca atatctgtcc ccacgaacat cgatcaatta gttccttcaa
     1201 ttggaaatat aactcaaaat taaaattctc ttttttaatt ctgtcaattt aatagatcga
     1261 actattttat catgacacta aacaaattac ttggaatcta aataagaaat tacaacattt
     1321 tctacaaagt tagcagaata tccagaatga taacatatag ttgtgtaatt aagataaaac
     1381 tcatgaatat ttaatttaag aacaaataaa taatgaaaat tactttagta gtcatatttt
     1441 ttgtctttat taaggaaatt aattgagagg taatatctac acatatactt attttattga
     1501 tcaaataaaa taattcaatc gaagaagata aaagtttaga tcctttaatc tagtagtgat
     1561 aataattcaa gatctatttc attctagtaa ataa
//
LOCUS       DATCMF010000245         1947 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_185496, whole genome shotgun sequence.
ACCESSION   DATCMF010000245 DATCMF010000000
VERSION     DATCMF010000245.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1947)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1947)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1947
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_185496"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(239..664)
                     /locus_tag="VIL14_03085"
     CDS             complement(239..664)
                     /locus_tag="VIL14_03085"
                     /inference="COORDINATES: protein motif:HMM:NF012451.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ domain-containing protein"
                     /protein_id="HEY8522722.1"
                     /translation="MSDYYKILGVTKDSNQIQIRKAFRKLALQYHPDKNKNSEESKQK
                     FMEIVKAYEILSDEKSRERYDSNIVNDKNIQRFNWTPPADFANFYSYENLKREYNENQ
                     ISGGMWEISEKANAGLWKATFILLASLGLVSIFILLKIY"
     gene            799..1935
                     /locus_tag="VIL14_03090"
     CDS             799..1935
                     /locus_tag="VIL14_03090"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEY8522723.1"
                     /translation="MEKFFGKKVTDKLNFQEKDKKPSELNHINNINNIQKFDLYNKGI
                     NHMANEKLSDAIRCFELSLRIDPQFVNAWIKKGYTHFHLAEYSVAISCYDNALDLDIN
                     NFDAWNLKGLAYYRMNNLLKAIECCEKSIDINHNNAMAWYNLSCYLVLDGRVDDGMEA
                     LKRAIEIDISYAKRAVRDKDFENAKAEEGFRRIIEVVVLEAIRHGYDYPGRIIWITGM
                     DKAEVDDALLRLSMKGLVLRKEKKNFFNKEEYFELSKEIASKVGTLKRSGFMGKSREV
                     SPPVQQLKDISEILAKMRDSVEQGDVQATIGYFDKLINPSIHGSTMIEKFFNEHRDLR
                     LYQNRLKDKGQEYLNSHKSDFIKLMIEIDSKVRGTHLSNNVIDN"
BASE COUNT          691 a          266 c          313 g          677 t
ORIGIN      
        1 cacttaataa aatcaaccct acttcatttc tagaatgtat ttggtttatt cgagaaagag
       61 cttctttagg tgtttgaaca ttaattcctt cgattccagc catttgaaaa cttgtaataa
      121 agatacgatt tcctattgct aaaactttca actttactat tgtgagtaat tttgatcctt
      181 taaatacttt tttcagagaa cttgaagaga tatgtagaaa attaatttgt ctaaattatt
      241 agtaaatttt taataaaata aagatagata ctagacccaa cgatgctaac aagataaatg
      301 ttgctttcca taatcctgca ttggcttttt cacttatttc ccacataccg ccacttattt
      361 gattttcgtt gtattctctt ttgagatttt cataactata aaaattagca aaatctgctg
      421 gaggtgtcca attaaatctc tgaatatttt tatcatttac tatattagaa tcatatcttt
      481 ccctagattt ctcatctgag agaatttcat atgctttaac aatttccatg aatttctgtt
      541 ttgattcttc tgaattttta ttcttatcag gatggtattg cagggctagc ttgcggaagg
      601 cttttcgtat ctgaatttga ttagaatcct ttgttactcc taatatttta tagtaatctg
      661 acacttaata atatattggt aaagctaaaa taataatttt ttcttaactt tataattttt
      721 tatagtcgat cacatatatt agtcactata acaaataaat cataatctat ttatcttcgt
      781 gaatggatct gttgttatat ggaaaaattc tttggaaaga aggtaactga taaacttaat
      841 tttcaagaga aagataaaaa accttctgaa ttaaatcata ttaacaatat taataatatt
      901 caaaaatttg atctttataa taagggcatt aatcatatgg cgaacgaaaa actctctgat
      961 gctattagat gttttgaatt atctttaaga attgatcccc aatttgttaa tgcatggata
     1021 aaaaaaggtt acactcattt tcatcttgcc gaatatagtg tagccatttc ttgctatgat
     1081 aatgctttag atttagatat taacaatttt gacgcttgga accttaaggg acttgcctat
     1141 tatcgaatga ataacctact aaaagcaata gagtgttgtg agaaatcaat agatatcaat
     1201 cataataatg caatggcatg gtataacctg tcctgttatc tcgtgcttga tgggagagta
     1261 gatgatggca tggaggcact aaagagagcc attgaaattg atatttctta tgctaaacgt
     1321 gctgttagag ataaagattt tgaaaatgca aaagcagaag aaggatttag aagaataatt
     1381 gaggttgttg ttttagaggc aataagacat ggctatgatt atccaggcag aatcatatgg
     1441 atcactggta tggataaagc tgaggtagat gatgctttgt taagactttc aatgaaagga
     1501 ttagtactaa gaaaggaaaa gaaaaacttt tttaataaag aagaatattt tgaactctca
     1561 aaagaaatag cttcaaaagt agggacattg aaacgctcag gcttcatggg aaaatctcgg
     1621 gaagtatccc ctcctgttca acaattaaaa gatatcagtg aaatattagc taaaatgaga
     1681 gattctgtag aacaaggtga tgtccaagca actattggat attttgataa attgataaat
     1741 ccttctattc atggaagtac aatgatcgaa aaattcttta atgaacatag ggatttaaga
     1801 ctatatcaaa atcgccttaa ggacaaaggg caagaatatt taaattctca taaatctgac
     1861 tttataaaat tgatgataga aattgatagt aaagtcagag gaactcattt gtctaacaat
     1921 gtaatagata attaaaatca ctctcga
//
LOCUS       DATCMF010000246         1566 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_231821, whole genome shotgun sequence.
ACCESSION   DATCMF010000246 DATCMF010000000
VERSION     DATCMF010000246.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1566)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1566)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1566
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_231821"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            67..1080
                     /locus_tag="VIL14_03095"
     CDS             67..1080
                     /locus_tag="VIL14_03095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HEY8522724.1"
                     /translation="MGHRKYSAPRRGSLAFYPRVRAKSEEARLRNWPELNDNTSLLGF
                     AGFKAGQLQVMTIDDKEKTPNFGKQLDNSSTVIATPPINIIGIRCYRKDLYGEKAFID
                     AYSKDFPKGLERKFKTKYNEKSFETIESSIDLISSFFAIASVFPKKANLSQKKPFVFE
                     IGVSGKDNKTKYHYLKGILGKEIKISDVFQNGQLIDVSGITRGKGVEGPITRFGVKRK
                     QHKSRKSVRALGTLGPISPAVVMYSVPRQGQRGFHQRTEYNKRILLVSSDVSSQTASL
                     SSKLSINPPGGFKHFGVVTTDYIVVRGSIPGVPKRLVKMRQPIRNTTKKVIEPKVIEV
                     IAK"
     gene            1077..>1566
                     /gene="rplD"
                     /locus_tag="VIL14_03100"
     CDS             1077..>1566
                     /gene="rplD"
                     /locus_tag="VIL14_03100"
                     /inference="COORDINATES: protein motif:HMM:NF012782.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HEY8522725.1"
                     /translation="MSITTILETDGSNRSTITLPAVFETPYRPEVIQKVYNNLNSYTF
                     QRQGRYPAAGQMVSAESRNTGLGIARIARARGEGFPRAGQAAGVASVRHGRLAHPPVS
                     WKNIYKKVNKKEKLLALCSAIAATTNSELIKRRGHKIKDEIQLPIVVSNEIESVVKSK
                     DLE"
BASE COUNT          550 a          243 c          320 g          453 t
ORIGIN      
        1 gctattttta cattattttg aagatataaa tttattaatg ggattgaaag gtttcatgct
       61 gtatcaatgg gtcatagaaa gtatagcgcg ccgagacgcg gaagccttgc attttatcct
      121 cgagttagag ctaagagtga agaggctaga ttaagaaatt ggcctgaact caatgataat
      181 acttcccttt taggttttgc tgggtttaag gcaggccaac tacaagtcat gacaatagat
      241 gacaaagaaa aaactcctaa ttttggtaaa caactcgaca attcatcaac ggtaattgca
      301 actccgccaa tcaatattat tggtataaga tgttatagaa aagatctcta tggagaaaag
      361 gcttttatcg atgcttattc taaggatttc ccgaaaggat tagagagaaa atttaagact
      421 aaatataatg aaaaatcttt tgaaacaatt gaatcgtcta ttgatttgat ctcttctttt
      481 tttgcaattg catctgtttt tcctaaaaaa gcaaatctat ctcagaaaaa accctttgtt
      541 tttgagatag gcgtctcagg aaaagataac aaaacaaaat atcattattt aaaaggtatt
      601 ctaggaaaag aaattaaaat ctcagatgtt tttcaaaatg gtcaattaat agacgtatca
      661 ggaattacta gaggcaaagg tgttgagggt cccatcaccc gttttggtgt taagcgaaag
      721 caacacaaat caagaaaaag tgtaagagct ctggggacgt taggtcctat atctccagcc
      781 gtggtcatgt attctgtacc gaggcaagga caaagaggtt ttcatcaaag aactgaatat
      841 aataaaagaa tattattggt atcatctgat gtttcttctc aaaccgcgtc gttatcttct
      901 aagctttcca tcaatcctcc cggaggtttc aaacattttg gagtagttac tactgattat
      961 attgtagtta gaggatcaat tccaggagtt ccgaagagat tggttaaaat gagacaacct
     1021 ataaggaata ctacgaagaa agttattgag cctaaagtca ttgaggtaat tgccaaatga
     1081 gtattactac tatattagaa acggatggga gtaatagaag tacgataacc ctaccagcgg
     1141 tttttgaaac tccttatcgc ccggaagtaa ttcaaaaagt ttacaataat cttaattctt
     1201 atacatttca aagacaaggt agatatcctg cagccggcca gatggtgagt gcagaatcgc
     1261 gtaatactgg attaggtatt gcaagaatag cgagagcacg aggtgaaggt tttccgaggg
     1321 cgggacaagc tgcgggtgta gcaagcgtga ggcatgggcg actagctcat cctcctgttt
     1381 catggaaaaa tatctataaa aaggtaaata aaaaagagaa attattagct ttatgttctg
     1441 ctattgcagc aacaactaac agtgaattga tcaaaaggcg aggacataag ataaaggatg
     1501 aaatacaatt accaattgtt gtttcaaatg aaattgaatc agtagtaaag tcaaaagatt
     1561 tagaaa
//
LOCUS       DATCMF010000247         2067 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_365017, whole genome shotgun sequence.
ACCESSION   DATCMF010000247 DATCMF010000000
VERSION     DATCMF010000247.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2067)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2067)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2067
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_365017"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..268
                     /locus_tag="VIL14_03105"
     CDS             <1..268
                     /locus_tag="VIL14_03105"
                     /inference="COORDINATES: protein motif:HMM:NF003239.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HEY8522726.1"
                     /translation="TFFSKLKVYPHVLLRENKMIATAGADRLQEGMRRAFGKATGLAA
                     RLKPGQSIIEAYVHLDNLSLAKEGFKIASSKIGCPTEIRITKLK"
     gene            720..1904
                     /locus_tag="VIL14_03110"
     CDS             720..1904
                     /locus_tag="VIL14_03110"
                     /EC_number="2.7.2.3"
                     /inference="COORDINATES: protein motif:HMM:NF012389.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004618 - phosphoglycerate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HEY8522727.1"
                     /translation="MRFLQDLDDKEYEGKIAFVRVDFNVSIKNGHIGEDYRIRMSLPT
                     IEYLTKRNCKVILASHLGRPVNHQNNYSLKPVAHRLSAILSKRQVSFVNNSIGDEVEN
                     KIKTLPCDGVLLLENLRFYKEEELNDPEFSKRLASLADIYINDAFSTSHRKHSSTYGA
                     ATLFNTKLGGFNLKKEIEYLTMIKEHPMRPFIIVIGGVKIKDKIGALENLLPKADKVL
                     IGGAAAYTFLKSKGFKIGNSIIDYDHLKWVELSLKRYGEKILLPTDHLVSSDPENSSF
                     IYCKEDIPAGMSGFDIGKETIQNFSSQLGSTRKGTVFWNGPMGLFEKDVFSNGTINIA
                     KSMALAYGRGATTLIGGGDTMEGMKKAGVSEKEVSHVSTGGGATLRYLAGDRMPGLFI
                     LE"
BASE COUNT          732 a          282 c          343 g          710 t
ORIGIN      
        1 taccttcttt tccaaattaa aggtatatcc acatgttctt cttcgggaaa ataagatgat
       61 tgcgacagct ggtgccgacc gacttcagga agggatgaga agagcctttg gtaaagctac
      121 aggattagcg gcacgtctta aacccggcca atccattatt gaagcctatg ttcatttaga
      181 taatctttca ttagcaaaag aaggttttaa aatagcatct agcaaaatag gatgtccaac
      241 cgaaattcgt ataactaagt taaaataaat ccatagtttt aattaaaatt ttataaacgt
      301 tgcattataa cttaattatt ttttattatt tataattgca tacatactac aactatcttt
      361 agagttaaat ttatgaatgt atctatcagt taattttgtc taattgactt attcatggta
      421 aagaatttaa aaattccttt attacttatt ttgagtacct aaagattctt actacatcta
      481 ttttaataaa ttactttttt taatcagaag gagattgtat atataattta tggattaaag
      541 ataaatttta tttatcatta aataatgttc aaagaaatgg aacatgaata cattttcata
      601 gtataatttt ttgataaaaa cttaattata tagttgaagt tttttttact tgttatttaa
      661 cagtacttta actatcataa cctttattgt atgagatttg tttttgatat gtaaataata
      721 tgagatttct tcaggattta gatgataaag aatatgaagg aaaaatagcc tttgtaaggg
      781 ttgatttcaa tgtaagcata aaaaatggtc atatcggtga ggattataga atccgaatgt
      841 cacttcccac catagaatat cttactaaaa gaaattgcaa agttattttg gcctctcact
      901 taggaaggcc tgtaaaccat caaaataatt attcgttgaa acctgtcgca catagattat
      961 cagcaattct ttctaaaagg caagttagct ttgtcaataa ttccatagga gatgaagttg
     1021 aaaacaaaat taaaaccctt ccctgtgatg gtgttttatt attagagaat cttcgttttt
     1081 ataaagaaga agaacttaat gatcctgaat tctcaaagag acttgcctct ctagcagata
     1141 tatatattaa tgatgcattt agtacttctc atagaaaaca ttcttcaact tatggagcag
     1201 ctacactctt taatactaaa ttagggggat ttaatttaaa aaaggaaata gaatatttga
     1261 ccatgataaa ggaacatcct atgcgtcctt ttataatagt tattggaggt gtaaagatta
     1321 aagacaaaat cggtgcttta gaaaatttat tgccaaaagc agataaagtc ttgataggag
     1381 gagctgctgc ctatactttt ttaaaatcaa aaggatttaa aattggaaac tccattattg
     1441 attatgacca cctgaaatgg gtagagctct ccttaaaaag atatggtgaa aaaattcttt
     1501 tacctacgga tcatcttgta tcatccgacc cagaaaattc ttcttttatt tattgtaagg
     1561 aagacatacc agctggcatg agcggattcg atattggaaa agagactata caaaattttt
     1621 cttcccaact tggttctacg agaaaaggca cagtcttttg gaatggacca atgggattat
     1681 ttgaaaagga tgttttttca aatggaacta taaatattgc taagagtatg gcccttgcat
     1741 atgggagagg agctacaact ctgattggtg gtggggatac tatggaagga atgaaaaaag
     1801 cgggtgtatc tgaaaaagaa gtaagtcatg tatctactgg tggaggtgcc accttaagat
     1861 atctagcagg ggataggatg cctggattgt tcatcttaga ataataataa attgaataac
     1921 tcataggaag agatcataag aacaattatg tactctgtac tgtgagtatc aatcttatta
     1981 gtagttaaat ttttaaatta ttcattatta taattattta taaattcatc aatattttcc
     2041 aaacaatgta ataccatact tttactt
//
LOCUS       DATCMF010000248         2589 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_99701, whole genome shotgun sequence.
ACCESSION   DATCMF010000248 DATCMF010000000
VERSION     DATCMF010000248.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2589)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2589)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2589
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_99701"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..313)
                     /locus_tag="VIL14_03115"
     CDS             complement(<1..313)
                     /locus_tag="VIL14_03115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522728.1"
                     /translation="MNRTGLNLILQGMPSSLGAYHVLGSNIIVANRYILEYIKNTKSK
                     EEYNSFVFAVLAHEYLHSLGIIDENKVRKMTYKLCFDMFGKDHTTTKFAYNPLGAFPQ
                     LQ"
     gene            740..1570
                     /locus_tag="VIL14_03120"
     CDS             740..1570
                     /locus_tag="VIL14_03120"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEY8522729.1"
                     /translation="MSNNNQKRVVVITGSSRGIGKAIAKEFAKNNYSVLLNARDEKEL
                     IETVQEIKNEISDPSQVAYLTGDISEEKICISLIEEAINKFGRINVLVNNAGISGPSQ
                     RTNNITSKDWDYVIGVNLRGTFLCTREALKYMTSGSNNNNNIDHVKSNNKDFDYDLNF
                     SIINISSVHESIPMPYSAPYSASKGGMEMLTKNIALEVAEKGIRINGIAPGAINTPMN
                     KDIIEDPQKKKQEEEKIPMRRIGELEEIAKVAFFLASTDASYITGTTVYVDGGLTLSQ
                     "
BASE COUNT         1016 a          311 c          360 g          902 t
ORIGIN      
        1 tttgtaattg tggaaatgca cctaatggat tatatgcaaa tttggttgtt gtatgatctt
       61 ttccaaacat atcaaaacat aatttataag tcatttttct cactttattt tcatctatta
      121 tccctaaact gtgtaagtat tcatgagcca aaactgcaaa aacaaaagaa ttgtattcct
      181 ccttcgattt ggtatttttt atatattcta atatatatcg attagcaact atgatatttg
      241 aacctaaaac atgatatgct cctagactac ttggcattcc ttgtagtatt aaatttagtc
      301 cggttctgtt cattttaaaa acagtagata tagaagtttt tacaaattca aatatctctt
      361 taaaatcttc tagttgattt aacttatttt tattgttttg tatttctaaa actttttggt
      421 ttatttttta tatctcctag atataggagg gtcgttcgat ttaataaatt tttgttattg
      481 ataatgaaat gatattaaga tgaattatat tcaaaattgt atataataaa tttctttttc
      541 taatccattt gcttaatatt aattttaaca gtatattaat cagttataaa taatattctg
      601 tacaaataac acaaatttta ttttattctg acttacggcc agtgattaat aaattatatc
      661 tactactaca tcatataaag taaaatttaa ttagtgataa ttatctaact gtaaaatatc
      721 ttgtagtata atattacata tgtctaataa taatcaaaaa agagtagtag tcattacagg
      781 atctagtaga ggaataggaa aagcgattgc caaggaattt gcaaaaaata attattctgt
      841 tttgttgaat gcaagggatg aaaaagaact aatagaaaca gtacaagaaa taaaaaatga
      901 aattagtgac ccaagtcaag ttgcatatct aactggagat atttcagaag aaaaaatttg
      961 catttcttta attgaagaag ctataaacaa atttgggaga attaatgttt tggttaataa
     1021 tgctggtatc agtggaccat cacaaagaac aaataatata acatccaaag attgggatta
     1081 tgttatagga gttaatttaa gaggaacatt tctttgtaca agagaagcgt taaagtatat
     1141 gacaagtggt agcaacaata ataataatat tgatcatgta aaaagtaata ataaagattt
     1201 tgattatgat ttaaactttt ctataattaa tatttcctca gtacacgaat ctatacctat
     1261 gccatattct gccccttatt ctgcatcaaa aggaggtatg gaaatgctta ctaagaatat
     1321 agcattagaa gtagctgaaa aaggaatacg aataaacggt attgcacctg gtgcaataaa
     1381 tacacctatg aataaagata ttatagaaga tccacaaaag aaaaaacaag aggaagaaaa
     1441 aattcctatg agaagaatag gagaacttga agaaattgcc aaagtagctt tctttttagc
     1501 ttcaactgat gcaagttata ttacaggtac gacagtttac gttgatggtg gcttgacact
     1561 atcccaataa ataaaacagt ataaataatc attaactttt ggtttggtat tatgacaatt
     1621 gctacacact aaaagaatta tcgtatatat ttttcattta ctattagata aacaacagct
     1681 tatgaatttc atgtcaatgg aataagttca agttgtatca gtaaatgaaa gaccatagaa
     1741 gaaaggtaat atttatactt aagaaacttt gaaaaaggaa gtacaaaatt aatgaggata
     1801 attccaccac ttttcaaata aaatatttcg acaaagtgac ataaaaaaaa cctagattaa
     1861 taatacactt ttttgataat ttgttgttgt taattttctt tatttcgtga ggaaaaattg
     1921 ttatttttgc atccaccttt aatatagtat attgaataat gaattagaga actgatctag
     1981 tgtctaccaa aaatagaaaa ataatgataa tagatgatga tatagacatc attttatagg
     2041 ataaggtatg agcaatgaat accactgtaa agaagttgag ataaataaat aaatttctta
     2101 tcttaacata tatttttaat attaatatat caataactat aattacgata aaattttcat
     2161 caacattaaa taatatattt aaaatatatt attacaaaaa caattcttga gaaaaatagt
     2221 cttaatctta tcatagccta tagtgcagat gctattggct atggtaattc actaaactat
     2281 aatgtccaat gattttataa gattatacaa ttccaaagta agaaagtatc tgaatttcat
     2341 taatcgtagc attctatatt gctctaatga tatgatgatg gctatggatt ttaatcgttc
     2401 tgaaaagtta gaactaagtc tttattcaca aggtttccga tctacagaaa aagattatac
     2461 aaatgaataa tacagtaaag ggccaaactt caaaaactaa tttcaaaaga gaatgacaat
     2521 tagtataaag agaatgtata aatcattgtg tcactttcga tattacgttt cattattata
     2581 ccatagaac
//
LOCUS       DATCMF010000249         1541 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_365348, whole genome shotgun sequence.
ACCESSION   DATCMF010000249 DATCMF010000000
VERSION     DATCMF010000249.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1541)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1541)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1541
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_365348"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(58..813)
                     /gene="bluB"
                     /locus_tag="VIL14_03125"
     CDS             complement(58..813)
                     /gene="bluB"
                     /locus_tag="VIL14_03125"
                     /EC_number="1.13.11.79"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016722 - oxidoreductase activity, acting
                     on metal ions [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0032363 - FMN catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5,6-dimethylbenzimidazole synthase"
                     /protein_id="HEY8522730.1"
                     /translation="MADFKEGKRTPTFSECEREGLYKAIFLRRDIRSHFVSNKTISDD
                     VLFKIINAAHHAPSVGFSQPWNFILIRNKSTRKQVKESFLREHKRSISMLDTETSKQE
                     KYVSLKLEGIIESDINICVTYDARRFGPFVLGRTSIPETGVYSVCCAIQNLWLAARAE
                     GIGVGWVSIISNEDLHRILSIPQDIRPIAYLCLGYVNEFAEIPDLERAGWLPRLELSQ
                     VICYEQWGKISAAFKKDDTISDTRLTKYAEAYP"
     gene            1077..1532
                     /locus_tag="VIL14_03130"
     CDS             1077..1532
                     /locus_tag="VIL14_03130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522731.1"
                     /translation="MKRTILLMGSFAMALSLLASVGFFVSSSFAQENQTNLTTSTNET
                     GAMTGNQTESGTVSGIENLTGGGSGNTGLLQNDTNIASQNNSVIGGVEQEQEATETSN
                     MTSQQEQNETGVMIGNETNQTGEGGNATQQGPLEQLGDTLSGIFGGGTK"
BASE COUNT          465 a          298 c          309 g          469 t
ORIGIN      
        1 tttattatat ttaataaata gtcgtttgct ataggtttca agaagtctga ggtcggacta
       61 aggatatgct tctgcatact tggttagcct agtatcgcta atagtgtcat cttttttgaa
      121 ggcagcagag atttttcccc actgttcata acatattacc tgactcagtt ctaatctagg
      181 aagccaacct gctctttcta aatcaggtat ttctgcaaat tcattgacgt acccaagaca
      241 cagataggct attggtctta tgtcttgagg tatagacaag attctgtgca aatcttcatt
      301 cgaaattata ctaacccatc ctactccgat tccttctgct ctagccgcta gccatagatt
      361 ttgaattgca caacatacac tgtatacccc agtttcagga atagatgttc gacccaatac
      421 aaaaggtcca aaccgtctcg cgtcgtaggt cacacaaatg ttgatatctg attctattat
      481 gccttcaagt ttcagcgaga cgtacttctc ttgtttgcta gtttccgtat ccaacatcga
      541 aattgatctc ttgtgctccc gtaaaaatga ctccttgacc tgctttcggg ttgatttatt
      601 cctaattagt atgaaattcc acggctgtga aaaacctacc gatggcgcat gatgagcggc
      661 gttgataatt ttaaacagga catcatcaga aatagttttg ttgctgacaa agtgtgaccg
      721 aatgtcacgt cttaaaaata ttgccttgta tagaccttct ctttcacact cggagaaggt
      781 tggagtacgt ttaccctcct tgaagtcagc catagtataa attttatatt actaaataaa
      841 aagtaatgag ttcagtttct atcgcaggaa attagatact tattcgcggc gacgacacct
      901 gcggtacatc ctggagtatg ttcatagaac agaaggttca ctatgtattt ctggtttcta
      961 gagacactaa tgcgcctttg tcagcttacc catttttgtt actacgacta attacgatta
     1021 tacaggtatc cattcttaaa agatttttat agcgtattat ttagttttga tgggtgatga
     1081 aaagaacaat tttattaatg ggatcttttg caatggcatt atcattgttg gcatcggtag
     1141 gattttttgt gagctcttcc tttgctcaag aaaaccagac aaacctgact acctccacta
     1201 acgaaacagg tgcaatgact gggaatcaaa cagaaagcgg aactgtcagt ggaatcgaaa
     1261 acctaacagg cggtggttct ggtaatactg gtcttctcca aaatgatacc aatatcgcta
     1321 gtcagaataa ttcagtaata ggaggagtgg aacaggagca ggaagctaca gaaactagta
     1381 atatgacatc acagcaagag caaaacgaga caggtgttat gataggaaat gaaacaaatc
     1441 agacaggaga aggaggaaat gcgactcagc aagggcctct tgaacaactg ggagatacat
     1501 taagcggcat ttttggtgga gggactaaat agatttctat t
//
LOCUS       DATCMF010000250         1863 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_232237, whole genome shotgun sequence.
ACCESSION   DATCMF010000250 DATCMF010000000
VERSION     DATCMF010000250.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1863)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1863)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1863
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_232237"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..225)
                     /locus_tag="VIL14_03135"
     CDS             complement(<1..225)
                     /locus_tag="VIL14_03135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522732.1"
                     /translation="MFLIYRNKITNLTKIGLTLGFSGMIILVGPSIGGDQGLSLVGIV
                     TLLISSLLWALGSIFSSKVSLPQNFLLSAGM"
     gene            complement(216..563)
                     /locus_tag="VIL14_03140"
     CDS             complement(216..563)
                     /locus_tag="VIL14_03140"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HEY8522733.1"
                     /translation="MNQQLKLWIIIITLSLTVGSSFIAIKIVLDSIPPLFSFSIRFMI
                     TGGVLILVSYIFDRKSKEIKKITFWRNALFIGAFLILGGHGLIAYGAQYLSAGIASLL
                     NSTIPLWVVYLCS"
     gene            complement(820..>1863)
                     /locus_tag="VIL14_03145"
     CDS             complement(820..>1863)
                     /locus_tag="VIL14_03145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522734.1"
                     /translation="FRLMTTLIAGLQNSVLVIESSSKSGEWKTYESLKGSHPQSIAFD
                     LLNPSRAYCGTFDKGLLKTDNGGQTWDSIGKNEISTSNITSVSVSPLKEDKKDGFSKV
                     YVGTEPSALYVSSNGGESWERMNDLNKLESSKSWSFPPRPWTHHVRWIEPDVNNLDYV
                     FVAIEAGALVQSRDGGRTWIDRVKQGPYDTHTLATHKKAPKRLYSAAGDGYFESFDYG
                     ESWNNQTKGLGHHYLVGLAVDSANPQNVIVSASLTAQKAHSRENANSLVYRRSMNDEK
                     WNAVSKGFPESNGTIISILASNPNSDGEFYAINNRGIFSSIDSGVSWTSLDIPWSKEY
                     LLQHPFSLAIRKE"
BASE COUNT          619 a          358 c          275 g          611 t
ORIGIN      
        1 cattcctgca gataataaaa aattttgagg caatgatact ttactagaaa agatagaccc
       61 tagtgcccaa agtagtgaac ttattaataa tgttacaatt cctactagac ttaacccttg
      121 atctcctcca attgatggtc caacaaggat tatcatgcca ctaaaaccaa gagtaagacc
      181 aatttttgtt aaattagtta ttttatttct atatattaag aacataaata tactacccac
      241 aaaggaattg ttgaatttag taaagaggca attcctgcag agaggtattg agctccatat
      301 gctattaatc catgtccacc aagtatcaga aaggcaccaa taaacaaagc atttcgccaa
      361 aatgtaattt tttttatctc tttgcttttt ctatcaaaaa tataagaaac taatattaaa
      421 acaccacctg taatcataaa tctaatacta aaagaaaata aaggtggtat agaatcaaga
      481 acaattttga tagctatgaa acttgaacca acagttaaag acaaggtaat aattattatc
      541 cataacttta actgttgatt catagataca tatttccata aatcatttaa cttatatctg
      601 tctccattat tgctttagaa ttgctatgaa ataaaaataa tctcttttgt aggatcaact
      661 ctacatcaaa ataatttaca gaataattat gtatcctacg acttataatg tatcttccaa
      721 ttaacaggta ctatagtcaa tgagttctaa gatgtatatt tatttcccat gaaataccgg
      781 gatagattga actcattcga tcttattctg ttcatacatc tattcttttc tgattgctag
      841 agaaaaagga tgttgcaaaa gatattcttt ggaccatggg atatcaagcg atgtccaaga
      901 aacaccagaa tcaatagagc taaatattcc tcgattgttg atagcataaa attctccatc
      961 actattcgga tttgaagcaa ggattgaaat tattgttcca ttggattcgg gaaaaccttt
     1021 tgaaacagca ttccattttt cgtcattcat cgatctccta tatactagag aattagcatt
     1081 ttccctagaa tgtgcttttt gcgcagttag tgaagctgat acaatcacat tttggggatt
     1141 agctgaatct acagcaagtc caacgagata atgatgtcca agtccttttg tctgattgtt
     1201 ccaggattct ccatagtcaa agctttcaaa atagccatca cctgcagcag aatatagcct
     1261 tttgggtgcc tttttatgag ttgctaaagt gtgagtatca taaggacctt gcttcacccg
     1321 atctatccat gttctgccac catcacggct ttgaactaga gctcctgctt ctatggcaac
     1381 aaaaacataa tctaaattat ttacatctgg ctcaatccaa cgaacatgat gagtccaagg
     1441 tctaggagga aagctccatg atttagatga ttctaacttg ttgagatcat tcattctttc
     1501 ccatgattca cctccattac ttgatacata taatgcacta ggttcggttc caacgtatac
     1561 cttactgaat ccatcttttt tgtcctcttt caaagggcta actgaaactg acgttatatt
     1621 cgaagtggaa atttcattct ttccaatact atcccaagtt tgcccaccgt tatcagtttt
     1681 caataaaccc ttgtcaaatg ttccacaata tgctctactt ggattcaaaa gatcgaatgc
     1741 tatactttgt ggatgacttc ctttcaaact ttcataagtc ttccattcac cactctttga
     1801 agaagattca atcacaagaa ctgaattttg cagtccagct atgagcgtag tcattaaacg
     1861 aaa
//
LOCUS       DATCMF010000251         3035 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_298265, whole genome shotgun sequence.
ACCESSION   DATCMF010000251 DATCMF010000000
VERSION     DATCMF010000251.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3035)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3035)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3035
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_298265"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(106..258)
                     /locus_tag="VIL14_03150"
     CDS             complement(106..258)
                     /locus_tag="VIL14_03150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522735.1"
                     /translation="MNRILPTILEPRDETTVQTSSGTGKQYKAVAEGQVNGTTILLYS
                     IEVQPA"
     gene            1114..1575
                     /locus_tag="VIL14_03155"
     CDS             1114..1575
                     /locus_tag="VIL14_03155"
                     /inference="COORDINATES: protein motif:HMM:NF022072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HEY8522736.1"
                     /translation="MTKVKYEIDINAPLEQVYEYYTNPDNIKEAWPQDIVKESQSLSG
                     SKNEEGSEMKVKGEYMGREDEMILQVTDKEQNKRLITEQKDGPFKYWKSVQEFNGSQN
                     ATHIRHYIDYELPNSGKIANFLSGDSANNKIEKGLQQAAQTVKQKLESQSV"
     gene            complement(1778..>3035)
                     /locus_tag="VIL14_03160"
     CDS             complement(1778..>3035)
                     /locus_tag="VIL14_03160"
                     /inference="COORDINATES: protein motif:HMM:NF012401.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HEY8522737.1"
                     /translation="QHIFFSFILPQIVFGLIFSLFSGKTKTKTKDKLQEPYKPEVREN
                     NTVVNYNRKEFIRLIIASVVSLPIIYFGLNRLFSPQEVEQQQIEPDTSNLSPPQSRSI
                     SPDFKDPTLAPFLASEITPTYLFYRIDINPIVPEVNVNSWNLLIKGMVGTPLKLSYEE
                     IKSMSAIEEFVTLECVSNKIGGDLIGTALWKGVRLKDILEKAKILPGVKYIVFRCSDG
                     YDVGIPLNKGLMKETILAYEMNLAPLTSKHGFPVRAIVPGLYGMMNPKWITEIELVDK
                     VYEGYWQRNGWSNIAEYNTGSSIVIPGQAPIRNRFRNLDENFTTNSRSSSKRVPIAGI
                     AFGGDKGISKVEVSTDGGITWKTAKIKEPLSRYTWVLWTTGFIPEKVENYKIIVRATD
                     KNGKVQSSELNKPFPDGATGYHTISV"
BASE COUNT         1071 a          453 c          418 g         1093 t
ORIGIN      
        1 ttcataatgg aaaggaagta ataaactttg aataaaaaaa tgttattgaa ggatagtaaa
       61 agtaaatggt ttaattattt ggctattcat tgtttttagg gaggatcatg ccggttggac
      121 ttctatacta tataacaaaa tggtagttcc attcacttga ccttctgcta ctgctttata
      181 ttgcttccct gttccactac ttgtttgaac tgttgtttca tctcttggtt caagtatagt
      241 tggtaatatc ctattcatac attgagaggt aatatttctt ctatgttatt ataaaagttg
      301 gtagaaaagt cagaattaca attacctgca ataattgtga cattaaatgg caatgtgttt
      361 actacagtag catttacctc aaatatatca cctatgtgaa tttcattagg aacagtaatt
      421 atattttcaa gtttaacttc agtgactagt acatttacta attcatctaa agtagaaata
      481 gccggatgtt ttaattgact ctgaataagt actttgatat atcaataacg ctaacgataa
      541 tattgcaatc attgttgata acagaacaat tgaaaatggt tcaaattgtt ttgtattata
      601 taatttcata aaaccaaatt gttggagtta atatataact ttttatggtt taggttacag
      661 ttttaaaaaa tatcataaag attttttctt ttaaaaactt aaaaattaac ttatttacta
      721 tatatagata aattcacaat tcctatttga tattttggca tgaaagattc agtagaattt
      781 taatagtgcc tatagaatta catctataat atcaattaac acatctttat gtatccaaaa
      841 taaccatttt aatgcatctc ctcttaatca ttttttctat aaactaaatc aaaaactatt
      901 aattatctta gattattatt taagtagtat tttagtgtaa ccaaaaaaat attcaagtta
      961 ataaaatgag ttataatata ttattaacaa ttagaattaa tatttttatg tcaaaacatc
     1021 tatgttagac tgtaactaga ggatatctta atagtgccca acgagtacat caattttatt
     1081 aacctttata aattatattt cacacgaatc atcatgacaa aagtcaaata tgaaatagat
     1141 ataaacgcac cattagaaca agtatatgaa tattatacca atccggataa cataaaggaa
     1201 gcctggccac aggatattgt taaagaatca caatcacttt caggttcgaa aaatgaagaa
     1261 gggtctgaaa tgaaagtaaa aggtgaatat atgggaagag aagatgagat gattttacaa
     1321 gtaactgata aagaacaaaa taaaagacta ataacagaac aaaaggatgg cccatttaaa
     1381 tattggaaaa gtgtacaaga atttaatgga agtcaaaatg ctacacatat aagacattat
     1441 atcgattacg aattaccaaa ttcaggaaag attgcgaatt ttctttcagg agatagtgct
     1501 aacaataaga tagaaaaagg attacaacaa gcagctcaaa cagtaaaaca aaaattggaa
     1561 tcacaatctg tctaatcata atacaaataa gaatttaaca tcataacatc tctatatatt
     1621 tttttatcat taaaattttt tctaaccacg acttataata gtatttttaa ttactatgtt
     1681 tattcatttt aattaaagaa ataaaaaata atatttttta ttttcatata ttaagtattc
     1741 aacgttatct gaccgttgaa ttttgagtaa agtgatatta tacacttatt gtatgatatc
     1801 ctgttgctcc atctggaaag ggtttattta actccgaact ttggactttt ccatttttgt
     1861 ctgtcgctct aactatgatt ttataatttt ctactttttc tggaatgaat cctgttgtcc
     1921 acaataccca ggtatatcta gaaagaggtt ccttgatttt agcagttttc caagttatac
     1981 ctccatctgt actgacttct acttttgaaa ttcctttatc ccctccaaat gctattcctg
     2041 ctataggtac tctcttacta gatgaacgag aatttgtagt aaaattttca tctagatttc
     2101 tgaacctatt tcttattggt gcttgtccgg gaataactat ggaggatcca gtattatatt
     2161 cagctatatt cgaccaacca tttctctgcc aatagccctc gtatacttta tccactaatt
     2221 ctatttctgt aatccatttt ggattcatca ttccatataa gcctggcact atcgctctaa
     2281 caggaaatcc atgcttagag gttaatggag ctaaattcat ttcatatgct agtattgttt
     2341 ccttcataag tcctttattc aatggtatcc ccacatcata accatcagaa catctaaata
     2401 ctatgtattt aacaccagga agaatctttg ctttttcaag aatatctttg agccgtactc
     2461 ctttccataa tgcagtacca ataagatctc cacctatctt attacttaca cattctaagg
     2521 ttacaaattc ttcaattgca gacatagatt ttatttcttc ataactcaat tttaatggag
     2581 taccaaccat tcctttaatc agcaaattcc aagaatttac atttacctca ggaacaatag
     2641 gatttatatc tattctataa aatagataag taggtgttat ttctgaagca agaaatggag
     2701 caagtgttgg atctttaaag tcaggggata ttgatcgtga ttgtggcggc gataaatttg
     2761 aggtatcagg ttcaatttgt tgttgttcta cttcttgtgg tgaaaataat cgatttaacc
     2821 caaagtatat aattggaaga gaaactacag atgcaataat taaacgaata aattcttttc
     2881 tattgtaatt tactactgta ttattctccc ttacttctgg tttgtaaggc tcttgtaatt
     2941 tatctttagt ttttgttttt gtttttcccg aaaacaatga aaaaattaat ccaaaaacta
     3001 tttgcggtag aataaaagaa aaaaaaatat gttga
//
LOCUS       DATCMF010000252         1815 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_298273, whole genome shotgun sequence.
ACCESSION   DATCMF010000252 DATCMF010000000
VERSION     DATCMF010000252.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1815)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1815)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1815
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_298273"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..220)
                     /locus_tag="VIL14_03165"
     CDS             complement(<1..220)
                     /locus_tag="VIL14_03165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522738.1"
                     /translation="MKKYRCPNCTSLNSLKVNRIFDGRLLFTCEKCQVCSVLPFYNNL
                     DETYLEFLDKFDKGYVTVFENLRVVLEKE"
     gene            306..467
                     /locus_tag="VIL14_03170"
     CDS             306..467
                     /locus_tag="VIL14_03170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522739.1"
                     /translation="MIDRNYQKKKILVEKFIKKNKKTDHSVILNEINIDYDTLIRIIS
                     DLRKEGRIK"
     gene            complement(523..1314)
                     /locus_tag="VIL14_03175"
     CDS             complement(523..1314)
                     /locus_tag="VIL14_03175"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEY8522740.1"
                     /translation="MKFKDQIIAITGASSGIGEQAAVDFSYNGAKTVILISRNIMKLN
                     QVKKKLNPDCNVEIYTCDISNKKMVYDIGQNIIEKIGTIDILVNNAGIGIYGKVIDQT
                     IEDIEKVTSTNYLGMIYFTKLFLPSMIKNKRGHIVNVASLAASFGIPCMAAYCGSKFA
                     MLGFSESLSYELKNTNVGVTVVSPIAVKTNFFDNESFKGKMPHKLGYVLEPKTVSKAI
                     LKAAYSKRIEIVVPFFVRSAVWLKHTFPYLINPIVSSSFKDHYYK"
     gene            complement(1427..>1815)
                     /locus_tag="VIL14_03180"
     CDS             complement(1427..>1815)
                     /locus_tag="VIL14_03180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522741.1"
                     /translation="KIESAAEKGVINFALVDNKTGNNIPHVTYIVGIYNQDNKNMFTA
                     NLHGHNGEIKLEFHNKAIKGYNINANYDSLSASYVSDFGSPIKIDGSVFSNPGKYRVV
                     TEITGIDFDNTFLPEPLKYEYNIDVS"
BASE COUNT          639 a          273 c          215 g          688 t
ORIGIN      
        1 tttccttttc aagtactact cttaagtttt cgaaaacagt cacataaccc ttatcaaact
       61 tgtctaaaaa ctctaaataa gtttcgtcta agttgttata aaatggtaaa actgaacata
      121 cttggcattt ttcacatgta aataataatc tgccatcaaa aattctgttt acttttaatg
      181 aatttaacga ggtacaatta gggcacctat acttcttcac attaataaaa tatacaaaac
      241 ataataaatt gcttatctag tcttatcttt tagatttata agatcatctc tatatttatt
      301 ttagtatgat tgatagaaac tatcaaaaaa aaaaaattct agttgagaaa tttataaaga
      361 aaaataaaaa aactgatcat agtgttattt taaatgaaat taatattgat tatgatacac
      421 ttatccgaat aatatcagat cttagaaaag aaggtcgaat aaagtaaaat atatggaatg
      481 ctttctttaa taaaatatct tttatatatt tgtataaaat atttacttat aatagtgatc
      541 tttaaatgaa gaacttacta ttggattgat taaataggga aaagtatgtt ttaaccatac
      601 cgcagatcta acaaaaaatg gaacaacgat ttcaattctt ttagaatatg cagctttaag
      661 tatagctttg gaaacagttt taggttcaag tacatatcct aacttatgag gcattttacc
      721 tttaaacgat tcattatcaa agaaattagt ttttacagca attgggctaa ccactgtaac
      781 ccctacattt gtatttttta attcatagga caaagattca gaaaatccta acattgcaaa
      841 tttcgatcca caatatgcag ccatacatgg aattccaaaa ctagctgcta atgaagcaac
      901 atttactata tgacctcgct tatttttaat catggaaggt aaaaataatt tagtaaagta
      961 aatcattccc aaataattcg ttgatgtaac tttttcaatg tcttctattg tctggtcaat
     1021 cacctttcca taaattccaa ttcctgcatt attaactaaa atatcaatgg ttccaatttt
     1081 ttctataata ttttgaccta tatcataaac catttttttg ttcgaaatat cgcatgtata
     1141 tatctctacg ttgcagtcag ggtttaattt cttttttact tgattcaatt tcatgatatt
     1201 tcttgaaatt aagataacag tctttgctcc attatatgaa aaatcaactg cggcttgttc
     1261 tcctatccca gaagaagcac cggttatggc gattatttga tctttaaatt tcattcatgt
     1321 tattaaatat cacacagtta aaaaagttct agcattatag tatgattaca atatttgttt
     1381 gtattacctt aaaatgcttc tataaattat tatggatata ttttgtttaa cttacgtcaa
     1441 tattatattc atattttaaa ggttctggta aaaaagtatt gtcaaaatct atgccagtta
     1501 tctcagtaac cactctatat tttcctggat tactaaaaac tgatccatca atttttatag
     1561 gacttccaaa atcagataca taactggctg aaagcgaatc ataatttgca tttatattat
     1621 atcctttaat tgctttatta tgaaattcta atttaatttc tccattgtgt ccatgaaggt
     1681 ttgcagtgaa catattttta ttatcttgat tataaatacc tacaatatat gttacatggg
     1741 gaatattatt tcctgtctta ttatcaacca gtgcaaaatt aattacgccc ttttctgctg
     1801 ctgattctat ttttg
//
LOCUS       DATCMF010000253         2210 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_100189, whole genome shotgun sequence.
ACCESSION   DATCMF010000253 DATCMF010000000
VERSION     DATCMF010000253.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2210)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2210)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2210
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_100189"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..987
                     /locus_tag="VIL14_03185"
     CDS             <1..987
                     /locus_tag="VIL14_03185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HEY8522742.1"
                     /translation="IDKSQFKKAKNFTKISEYINTKPISLADLKDKVILVDFWTYSCI
                     NCIRTIPHLNEWYDKYSDKGLIIVGIHTPEFDFEKNSDNVKSAVQKFGIKYPVLQDND
                     KEIWNEYENRYWPRKYLVDDEGYIRYDHIGEGAYQETEKVIQALLSERATHLGIKSIN
                     LNNIQNSNNGSKFEYQDVNFSKIQSPELYFGYELARTPLGNNESFKPNQSVLYILPEN
                     TAIKPNIIYLEGKWKNNPDNMELQSNNGNIILKYNSKSVNIVAGGNGNFTVKQDRNLI
                     KNDLSKDSSSDGKFLIDGQRLYNLVTNKEYGEHTIEIDVKGKGFQIYTFTFG"
     gene            1010..1291
                     /locus_tag="VIL14_03190"
     CDS             1010..1291
                     /locus_tag="VIL14_03190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522743.1"
                     /translation="MAILMDINTIVSIATIIILSVLLYLYTKIYLKTKATFTIGLMFF
                     ASMLVLQNLIVVYAYFAMASLYAEGLLPYFLVIHIAELAGVASLLKITL"
     gene            1440..1736
                     /locus_tag="VIL14_03195"
     CDS             1440..1736
                     /locus_tag="VIL14_03195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEY8522744.1"
                     /translation="MSDQDIIRLLWFLFAGTRGGDNRIKILDLLIKNPLNINKISEEL
                     QLDYKTIQHHMRILEKNNLITRMGDKYGILYFISNYLEKNIESYYNIKKKLVRP"
BASE COUNT          873 a          252 c          310 g          775 t
ORIGIN      
        1 attgacaaat cacaattcaa aaaagcaaaa aatttcacta aaatttcaga atacattaat
       61 acaaaaccaa tatctcttgc tgatctgaaa gataaagtta tactcgtaga tttttggact
      121 tatagctgta ttaattgtat aagaactatt ccacatctca atgaatggta cgataaatat
      181 tctgataaag gattgattat agtaggcata cacactcctg aatttgattt tgaaaaaaac
      241 agtgacaatg ttaaatcggc tgttcaaaaa tttggaataa aatatccagt tttacaagac
      301 aatgataaag agatatggaa tgaatatgaa aataggtatt ggccaagaaa atatttagta
      361 gatgatgagg gatatataag atatgatcat ataggagaag gagcatacca ggaaacagaa
      421 aaagtaattc aagctctttt gtctgaaaga gcaacacatt taggtataaa aagtatcaat
      481 cttaataata tacaaaatag taataatggc tccaaatttg aatatcaaga tgttaatttt
      541 tctaaaatac aatctccgga actttacttt ggatatgaac ttgcaagaac acctttgggc
      601 aacaatgaga gctttaaacc taatcaaagt gtactttaca ttctacctga aaatactgca
      661 attaaaccta atataatata tctagaaggg aaatggaaaa ataatcctga taacatggaa
      721 ttacaaagca ataacggaaa tataatattg aaatataact caaaatctgt gaatatagta
      781 gcaggtggaa atggtaactt tacagtaaaa caagatagga atttaattaa aaatgatcta
      841 agcaaagatt catctagtga tggaaaattt ttgatcgatg gacaaagatt atacaattta
      901 gtaacaaata aagaatatgg cgaacataca atagaaattg atgttaaagg aaaaggattt
      961 caaatctaca catttacatt tggctgaatg aaaagaaggg tatgatgata tggcaattct
     1021 aatggatata aatactattg taagtatcgc aactataatt attttaagcg ttttattata
     1081 tttgtataca aaaatatatt taaaaacaaa agctacattt acaataggtt taatgttttt
     1141 tgcaagtatg cttgttttac aaaatttgat tgttgtctat gcctattttg ctatggcatc
     1201 attatatgct gaaggtttat tgccatattt tttagtaatt catatagctg agcttgcagg
     1261 agttgctagt cttttgaaga ttactctttg aataaatgta aaggatatag aaaaaattgt
     1321 ataaaaaatt ataaaaagct ctattttgtt caaaaattct aaaactatta atcttcaaat
     1381 acaagatgtt ataaaagtaa atgcttttta tcatctcata gttattttga taatattcga
     1441 tgtctgatca agatataatc cgattgttat ggtttctttt tgctggaaca agaggaggtg
     1501 acaatcgtat taaaatcctt gacctattaa taaaaaatcc cttaaatatc aataaaatct
     1561 cagaagaatt acaattagat tataaaacaa ttcaacatca tatgcgtatt ttagaaaaaa
     1621 ataatttaat aactagaatg ggggataagt atggaatttt atactttata tctaattatt
     1681 tggaaaaaaa tattgaatca tattataata taaaaaaaaa attggtacgt ccatgatatg
     1741 aaattttaat atataatacg atacaattaa tttggtttcg tttaatttga ttatgacaat
     1801 cagtattaat acaatatata gtaatgtata aaatatttgt aattttatta cgttctaatt
     1861 tttaattatg tatttatctt tatattaagc tctaatctac aaatgtaact tatttggaac
     1921 tagaaagatg aaattatctt taggaatgtt attgcctagt ttgattatat tgtcttgtat
     1981 ttcctccacc tctattattt ttttacaaca acaagtgaga tattattatg gagttggtag
     2041 attgtaattc ttatttttat aaagttaaaa tattttatct ccaatatcat tttcagatat
     2101 tacagtttta ttcttatttt gaacatcaat taataattta gttggatcat agaattatct
     2161 actttagttc ccaaatcttt aagaatcttt ccgaaatgtc ctaaaatctc
//
LOCUS       DATCMF010000254         1860 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_497427, whole genome shotgun sequence.
ACCESSION   DATCMF010000254 DATCMF010000000
VERSION     DATCMF010000254.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1860)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1860)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1860
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_497427"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..190
                     /locus_tag="VIL14_03200"
     CDS             <1..190
                     /locus_tag="VIL14_03200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522745.1"
                     /translation="EITFTELLGDDSIIEVKTGSSLIRVANANSNLDLSIGHVIMLGI
                     PYSKVHFFDTDNGKRILF"
     gene            300..482
                     /locus_tag="VIL14_03205"
     CDS             300..482
                     /locus_tag="VIL14_03205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522746.1"
                     /translation="MCRIDYYICVNRIEPASYTFGKEGEFKPKISIFNIDFIPVEVGV
                     TEFEMVTSAAMEYNHF"
     gene            complement(501..1121)
                     /locus_tag="VIL14_03210"
     CDS             complement(501..1121)
                     /locus_tag="VIL14_03210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522747.1"
                     /translation="MLHVFNTKKLYLFFLLTASTYVSQVTDNSYAHIPQDNKTAPIQE
                     WRDQRNNVKIQFSYSPDNPLVYTLTDLKFSIQDLNTGNHIKDLISSLTITKDDKIFFK
                     FDDVAIQNGDLSLRVQFSEDGNYRAISQVSSTDNAAVALASFNILVPLQPLGKFNADS
                     LSSSLFPAGLVAISLSILVIAFIVVSRKKEKAKKSTNGEMQKGEGE"
     gene            1247..1516
                     /locus_tag="VIL14_03215"
     CDS             1247..1516
                     /locus_tag="VIL14_03215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522748.1"
                     /translation="MGRTIPSFRIASVMEKEEWKCFRKALDKKDRKIFDDMFEISILY
                     NSACVYSAKYVRIHPIFMSIIFHHYRQLVKISGQIDQEEEAKEMK"
BASE COUNT          587 a          327 c          341 g          605 t
ORIGIN      
        1 agaaataact ttcacagagc tgttaggtga tgattcaata atagaggtaa agacgggctc
       61 tagtttaata agagttgcaa acgcaaattc gaatcttgat ctatctattg gtcatgttat
      121 catgctcggc ataccttata gtaaggtcca tttcttcgat acagacaatg gaaaaagaat
      181 cttattttaa tcaaggataa attctataga ttctggccag tgacaagttt tagaatgctg
      241 tgttgctgcg gtcgctcgat cgatatttat tgaaaaagtt ctagcctgat aaacttattt
      301 tgtgtcgtat cgattattat atttgcgtaa atcgtattga gcccgcttcc tacacttttg
      361 gaaaagaagg agaattcaaa cccaagatat ctatctttaa tatagatttt ataccagtag
      421 aagtcggtgt gacagaattt gaaatggtaa cttctgctgc catggagtac aatcattttt
      481 agttatttta tcatatttat ctactcacct tctccttttt gcatttctcc attcgtagat
      541 ttctttgctt tctccttttt tcttgatact actatgaatg caattaccag tattgaaaga
      601 ctgattgcta ctaatcctgc aggaaacaac gatgaactca aggaatcagc attgaattta
      661 ccaaggggtt gaagtggaac aagaatgtta aaggatgcta atgcaactgc agcgttatct
      721 gttgaactta cttgactgat agctcgataa ttgccatctt ctgaaaattg cactcttaaa
      781 gagagatcac cattttgtat ggcaacatca tcgaacttga agaaaatctt atcgtctttt
      841 gttatagtta agcttgaaat aaggtctttt atatgatttc ctgtattcag atcttgtatg
      901 ctgaatttca agtcagtcaa ggtgtaaact aaaggattgt ctgggctata gctaaactga
      961 atttttacgt tatttcgctg gtctctccac tcctgtattg gggcagtctt gttgtcttga
     1021 gggatgtgag cataggaatt gtctgtgacc tgggatacat aagtgctagc agtcagcaag
     1081 aaaaataaat agagtttctt agtattaaac acgtgcagca tttgcttatt ctagttatta
     1141 aggtctagta ttaagaggag gcttgtaaca ttgtcttgtt atatgccaag tgagcaatct
     1201 aggttcaatg cttattacct tcttacaact ataagataaa tctcagatgg ggagaacgat
     1261 tccatcattt agaatagcca gtgtaatgga aaaggaagaa tggaagtgtt tccgtaaagc
     1321 gctagacaaa aaagatagaa agatattcga tgacatgttt gaaatctcaa tcctatataa
     1381 ttctgcatgt gtctattctg caaaatatgt aagaatacat cctatcttca tgtcaattat
     1441 atttcatcat tatagacaac ttgtaaaaat atccggacaa atagatcaag aggaagaagc
     1501 aaaggaaatg aaatagcgaa ccgataccat ggattccgga taaacagact gaaatagact
     1561 cgtctatttg agtataaatt atgaaggatt tcgaacacct gagcctgacc tgaagactgg
     1621 cctaaagagg gctctacgac tcaatgcttc cccctcctgt aatcggtaag ccaaacttcc
     1681 ttagagcctt ttcggtcatt acaatcaaca cagactgccc gaactcttca aatgatccag
     1741 tgttagtact acactgcata cctcgtctct atacaaatta atctctctgc agtcgctaat
     1801 ttttttattt cttaaaacca aaatttatga taactatttg gcaaataagt atatccccac
//
LOCUS       DATCMF010000255         1560 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_298423, whole genome shotgun sequence.
ACCESSION   DATCMF010000255 DATCMF010000000
VERSION     DATCMF010000255.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1560)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1560)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1560
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_298423"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1034)
                     /locus_tag="VIL14_03220"
     CDS             complement(<1..1034)
                     /locus_tag="VIL14_03220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008519 - ammonium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0072488 - ammonium transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter"
                     /protein_id="HEY8522749.1"
                     /translation="MALDTGDTAWMIVATGLVMLMTPGLGFFEAGLIRFKNGLSAIMH
                     TFSGLAILSTLWFIVGFTLVFGPTQGGIIGGLDHIFYNGVKVHEGFGINVTIPGVTFA
                     TYQMMFAVITPLLISGAFAERMKYSAFFIFAIAWSLFIYFPVAHWIWGGGWLAQLGVW
                     DFAGGIVIHTSAGMAALAAGLVFGRRKNFGPQIMVPHNLPLAVVGATMLWLGWFGFNA
                     GSALAANGVAGNALLTSQIGAATCTLVWLFLSWKRSGKPSIAAVINGAIAGLAGVTPT
                     AGYITGESAFVLGIILGFGSYYGIVLFKEKLKIDDALDVSSVHGVTGILGALTIGVAA
                     SPLIMEGGPVG"
     gene            complement(1141..>1560)
                     /locus_tag="VIL14_03225"
     CDS             complement(1141..>1560)
                     /locus_tag="VIL14_03225"
                     /inference="COORDINATES: protein motif:HMM:NF013227.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HEY8522750.1"
                     /translation="IQMKKLKTILDLRRRNSLLLSNLLETIIKKYNIQIPQEDKIKKF
                     NWYLYTLGFNGSDDLTLRDHIKKKLIENGIGVAVYYDPPVHKTPFYQKFSSLNDDLQN
                     TNWSSEHVLSFPVHPGVSEIDIQNIVNVLEKELQNII"
BASE COUNT          514 a          334 c          244 g          468 t
ORIGIN      
        1 ccaacaggtc ctccctccat tatcaaagga ctagcagcca ctcctattgt taaagcacct
       61 aggataccag tcacaccgtg aacggaacta acatctaatg catcgtctat ctttagtttt
      121 tctttgaata atactatacc atagtatgat ccaaatccga gaatgatacc tagaacaaaa
      181 gcggattctc cagtgatgta accagcagta ggggtaactc cagccagtcc agctatagca
      241 ccgtttatga cggctgctat ggaaggtttt cctgagcgtt tccatgacaa aaatagccac
      301 actaacgtac acgttgcagc tcctatttgc gatgtcaaaa gagcgtttcc tgcaacgcca
      361 ttagcagcta atgcactacc agcattaaat ccaaaccatc ccagccataa catggtagct
      421 cctactaccg ctagtggtaa attatgggga accattattt gtggtccgaa gttcttcctc
      481 cttccgaaga caagtccagc agcaagagcg gccatacccg cgcttgtatg tattactata
      541 ccacctgcaa agtcccatac accaagctgt gctaaccatc cgcctcccca gatccagtga
      601 gctactggaa aatatatgaa taagctccaa gctatggcaa atatgaaaaa tgcactatac
      661 ttcattcttt cagcaaatgc accagaaatt aatagaggag taataacagc gaacatcatc
      721 tgatatgttg caaaagtcac tccaggaatt gtaacgttta ttccaaatcc ttcatgaacc
      781 tttaccccat tgtagaatat atgatctaat cctcctatta tcccgccttg agtaggtcca
      841 aagaccagag taaaaccaac aataaaccac agggtggaaa gaattgccaa cccagaaaac
      901 gtgtgcatta ttgctgaaag accattcttg aatcgaatta aaccagcttc aaagaatccc
      961 aaaccaggtg tcattaacat gacaagtcct gttgcgacta tcatccatgc agtatcacca
     1021 gtatctaacg ccattcctgt tgctaagtca ccacatagta ttataaaaaa gtttgtccta
     1081 aactaataat aaattaattt aagagaaata tttaaaaata attataaatc ttctaattaa
     1141 ttatataata ttttgtaatt ctttctcgag cacatttact atgttttgta tatctatttc
     1201 tgataccccg gggtgaactg gaaacgataa aacgtgttca cttgaccaat tagtattttg
     1261 taaatcatca ttcaaagaag aaaatttctg ataaaaaggt gttttatgaa caggaggatc
     1321 ataatagaca gctactccta ttccattttc tatcagtttt ttcttgatgt gatctcgtaa
     1381 agttaagtca tcagaaccat taaatcctaa tgtatagaga taccaattaa atttttttat
     1441 tttatcctct tgtggaattt gaatgttata ctttttaata attgtttcta gcaaattaga
     1501 taataataag gaatttcgtc ttctaagatc caaaattgtt tttaattttt tcatttgtat
//
LOCUS       DATCMF010000256         1597 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_100376, whole genome shotgun sequence.
ACCESSION   DATCMF010000256 DATCMF010000000
VERSION     DATCMF010000256.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1597)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1597)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1597
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_100376"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            32..1279
                     /locus_tag="VIL14_03230"
     CDS             32..1279
                     /locus_tag="VIL14_03230"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY8522751.1"
                     /translation="MKANVIHGDFNPCGGAERLSLTTMQALLERGIDFDLTTLKSPDI
                     PKLENSYGKNLVSVMKSINKINVINIIEELRQQQQGEDHEDYNYDITINTNGDAAPYY
                     HPSFSKENAITYCHFPSTKYHIESENIDYLKTDLGMTERSNVFSNNKDYEDINNPKNC
                     KTKPQFNRRKEYFEILKYGYWNLMRNSTVITNSEYSRRAIVNACGLDNIYILSPPIDI
                     ETFRNVALMANGDDETNDIILVISRIAPHKKIENAIKLAKILKDNNVGKEMKIVGNLY
                     YYFFDYYSELKQMVLDLGLTDYITFEINASLDKLLSIIRESRVYFHPMVGEHFGMAVL
                     EAIAAGLIPVVPNEGGITEFVPQEYQFNTIEQAAEIIMYVFNHLPKTERIKINDDINK
                     FSNSHYIEGFQTILNEVLSQRRK"
BASE COUNT          622 a          236 c          243 g          496 t
ORIGIN      
        1 gattttgtct taacaagata gggtgcctga aatgaaagct aatgtcatac acggagattt
       61 taatccctgt ggaggtgcag aaagactatc acttaccact atgcaggcat tattagaaag
      121 ggggatagat tttgacctta caaccttaaa gagtcctgat ataccaaaat tagaaaattc
      181 atatggcaaa aatcttgtct cagttatgaa aagcataaac aaaattaatg tcataaatat
      241 aattgaagaa cttaggcaac aacaacaagg agaagatcat gaagattaca attacgatat
      301 tactataaat acaaatggtg atgcagctcc ttactatcat ccatcttttt caaaagagaa
      361 tgctattact tattgccact ttcctagtac aaaatatcat atagaatctg aaaatattga
      421 ttatctaaaa acagatcttg gcatgacaga aaggtcaaat gttttttcaa ataataagga
      481 ctatgaagat atcaataatc caaaaaattg caaaaccaag cctcagttca acagaagaaa
      541 agaatatttt gaaatattaa aatatggata ttggaatttg atgagaaatt ctacagtgat
      601 taccaattct gaatacagtc gcagggcgat agttaatgca tgtggattag acaatattta
      661 catactcagc ccaccaatag atattgagac ttttcgtaat gttgcattaa tggcaaatgg
      721 cgatgatgaa acaaatgata ttattcttgt aatatccaga atcgctcctc acaagaaaat
      781 tgaaaacgca atcaagcttg caaaaatatt aaaagacaac aatgtaggca aagaaatgaa
      841 aattgttgga aatctttact attatttttt tgattattac tcagaactta agcaaatggt
      901 tctagatctt ggtttgactg actatattac atttgaaatt aatgctagct tagataagct
      961 tctttctatc atacgagagt ccagagtata ctttcatcca atggtaggag agcattttgg
     1021 catggcagta ttagaagcta ttgctgctgg actaatccca gtggttccaa atgaaggtgg
     1081 tattacagag tttgttccac aagaatatca atttaataca atagaacagg ctgctgaaat
     1141 tataatgtat gtttttaatc atttgccaaa gacagagcga attaagataa acgatgatat
     1201 aaataaattc tcaaattctc attatattga gggatttcag accatattaa atgaagtatt
     1261 atctcaaaga aggaaataat aatgcctgtt aatgtaaaca ttacattttt atgggaacaa
     1321 gacagtctca gaaaataata acaagaataa aatttacttt tactttccaa tatttatgtt
     1381 actatgattt aagaaataat ttttaattat tctaaaagtt taacaatctg aaaatttaaa
     1441 tttattcaac cggatcccaa ttacatgaaa tactcaaagc gctctctagt catttcaaca
     1501 gttagaattc ctgaacatct tctaaactac aaaatatcta cataaacaaa tgttcaaata
     1561 tattgactaa aatgttactc attataatag aaatcta
//
LOCUS       DATCMF010000257         2187 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_365884, whole genome shotgun sequence.
ACCESSION   DATCMF010000257 DATCMF010000000
VERSION     DATCMF010000257.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2187)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2187)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2187
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_365884"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            157..909
                     /locus_tag="VIL14_03235"
     CDS             157..909
                     /locus_tag="VIL14_03235"
                     /EC_number="1.8.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0004604 - phosphoadenylyl-sulfate
                     reductase (thioredoxin) activity [Evidence IEA];
                     GO_process: GO:0019379 - sulfate assimilation,
                     phosphoadenylyl sulfate reduction by
                     phosphoadenylyl-sulfate reductase (thioredoxin) [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoadenylyl-sulfate reductase"
                     /protein_id="HEY8522752.1"
                     /translation="MVGTNISTIQFKEIADKMESESAQGILKWALDAYAPKIALASSF
                     GAEDIVLIDMMIRIAKEKTKIFTLDTGRLNQETYNVIDDIRKKYNIQIEAYFPAQAEV
                     EEMVRVKGMNLMYKSIENRKLCCEIRKVHTLNRALSKLDGWITGLRREQAITRVGIKK
                     VEVDNAHGNIIKLNPLADWTNKMVWDYIHKNSIPYNKLHDIGYPSIGCEPCTRAIQPG
                     EDPRAGRWWWEGNTSHKECGLHWDPTKDSKSR"
     gene            915..2072
                     /gene="sat"
                     /locus_tag="VIL14_03240"
     CDS             915..2072
                     /gene="sat"
                     /locus_tag="VIL14_03240"
                     /EC_number="2.7.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004781 - sulfate adenylyltransferase
                     (ATP) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase"
                     /protein_id="HEY8522753.1"
                     /translation="MNNIESNGNSIPRPHGGKLINKFTTRKNIDGLFSIEVSIDLLND
                     IENIADGTFSPLEGFMGQEDFESVVESGRLKNGLAWTIPIVLDVSDKMAAEIRDSGEA
                     VLKNNDDHFGVLNFEEAYSFDKIGMAKAVYQTEDVKHPGVARTLAMEDKLIGGKIELI
                     KKASSSPLRRYRMNPSEVRAEIIRRGWKTVVGFQTRNVPHVAHEMLQKAALNIYDGLF
                     LNPMIGKKKPGDFKDEVIIETYRTLLEKYYPKDRAMLVTLHTVMRYAGPREAIHHAIM
                     RKNFGCSHIIIGRDHAGVGDYYHPFAAQEIFKHYPDLEIQPLFFPAFYYCRKCISYAN
                     ERNCPHGSEFREELSGTKMRELINRSEIPAEHLMRPEISKLIVSYNDPFVK"
BASE COUNT          805 a          306 c          470 g          606 t
ORIGIN      
        1 cttatggtta aagatgatac aaaataattt gtaataagta gaaaacttgc caattttata
       61 tataagcaag ttttacgttt atccgaatat tttttggtat agcaagtaat tataaatctc
      121 tagtcgcatc atcattgtgt agattcagaa atgaaattgg ttggaacgaa catttcaaca
      181 atacagttta aggaaattgc agataagatg gaaagcgaat ctgcgcaagg gattctgaaa
      241 tgggcattag atgcttacgc accaaaaatt gctttagcat cgagtttcgg tgccgaagac
      301 atagtcctta ttgatatgat gataagaatt gctaaagaaa aaacgaaaat ttttacatta
      361 gatacgggtc gactcaatca agaaacttat aacgtaatag atgacatccg taaaaaatac
      421 aatattcaga tagaggcata ttttcctgct caggcagaag ttgaggaaat ggtaagggta
      481 aagggaatga atttaatgta taaaagtatt gaaaatagaa aactctgttg tgaaataagg
      541 aaagtacata ctcttaatag agcgttaagc aaacttgatg gttggattac tggtctaagg
      601 agggaacagg caataacaag agttggaatc aaaaaggttg aagtcgataa tgcacatggc
      661 aatatcataa aactaaatcc cttagcagac tggactaata aaatggtttg ggattatatt
      721 cataaaaata gcatcccata taataagtta cacgatatcg gctaccctag tataggttgt
      781 gaaccatgta ctagagcaat tcaacctggc gaggatccta gagcaggaag atggtggtgg
      841 gaaggtaata ctagccacaa agaatgtgga ttacattggg atcctacaaa agattccaaa
      901 agtaggtagt ataagtgaat aatatagaga gcaatggtaa tagcatacca cgaccacacg
      961 gaggcaagct cataaataaa tttactacta ggaagaatat tgatggatta ttttctatag
     1021 aagtatcaat tgatcttcta aacgatattg aaaatattgc tgatggaaca tttagccctt
     1081 tggaaggctt tatgggtcaa gaggactttg agagtgttgt agaatcaggc cgtttaaaaa
     1141 atggtctagc atggactatt ccaatagtgt tagatgttag tgacaagatg gcagcggaga
     1201 ttagagactc tggagaagct gtactaaaaa acaatgatga tcattttgga gttcttaatt
     1261 ttgaagaagc ttattcattt gacaagattg gtatggcgaa agctgtctat cagacagagg
     1321 atgtaaaaca tccgggggtt gcaagaaccc tagcaatgga agacaaactt attggaggta
     1381 agattgaact tattaagaaa gcatcctctt caccattaag aagatataga atgaatcctt
     1441 ctgaagttag agcagaaatt ataagaagag gatggaaaac ggtagtagga tttcaaacga
     1501 gaaatgttcc gcatgttgct catgaaatgt tacagaaggc tgcactgaat atctatgatg
     1561 gattatttct aaatccgatg attggtaaaa aaaaaccagg agatttcaag gatgaagtca
     1621 ttatagagac atacagaaca ctactggaaa agtactatcc taaggataga gctatgcttg
     1681 taacacttca tactgtgatg agatatgctg gaccaaggga ggcaattcat catgccatta
     1741 tgaggaagaa tttcggatgt tcccatatca ttattggaag agatcacgca ggagttggag
     1801 attattatca tccttttgca gcgcaggaaa tcttcaagca ttaccctgat cttgaaattc
     1861 agccattatt ctttccggca ttttattact gcagaaaatg tattagttat gcgaatgaaa
     1921 ggaattgtcc acatggatcg gaatttagag aagaattaag cggtacaaag atgagagagt
     1981 taatcaatcg ctctgaaata cctgcagaac acttaatgag accagaaata tcaaaactaa
     2041 ttgtgtctta taatgatcca ttcgttaaat aactatgttg tggagttaaa gtaattccta
     2101 gttaagaagc tcagcaggga agtggagatg agaataagaa aacaatatca agtcagattt
     2161 ttgaaaacta caagtattaa agatcga
//
LOCUS       DATCMF010000258         1642 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_497835, whole genome shotgun sequence.
ACCESSION   DATCMF010000258 DATCMF010000000
VERSION     DATCMF010000258.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1642)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1642)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1642
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_497835"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..269)
                     /locus_tag="VIL14_03245"
     CDS             complement(<1..269)
                     /locus_tag="VIL14_03245"
                     /inference="COORDINATES: protein motif:HMM:NF013582.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LSM domain-containing protein"
                     /protein_id="HEY8522754.1"
                     /translation="MTAVILRRFGEETVQFLGKKVSIETSDQKTYNGTLAGIDDKLDV
                     VLDNVEGHGILKLILNGSFVKEIKLMEKPFDFKSLSDRLSRVFPG"
     gene            complement(429..1016)
                     /locus_tag="VIL14_03250"
     CDS             complement(429..1016)
                     /locus_tag="VIL14_03250"
                     /inference="COORDINATES: protein motif:HMM:NF024635.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY8522755.1"
                     /translation="MTNRFRLVITGNPGVGKHTSAKLIAKKFRGSKIIDINEVALVNN
                     AILDDNDKYGISIDIKKVSKLIAQETKTNAEGLILVGHLAPYVIDPGKITIAIVLRRS
                     PYELISVFQQRHYASEKARENIASEILGVSLYDSIMSFGKDKIAEIDTTGEIPAQTSA
                     KIISLLQKKLRPQVGFVDWLSLVNKNGDLQRFLEY"
     gene            complement(1123..1638)
                     /locus_tag="VIL14_03255"
     CDS             complement(1123..1638)
                     /locus_tag="VIL14_03255"
                     /inference="COORDINATES: protein motif:HMM:NF013188.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HEY8522756.1"
                     /translation="MILGLAFGLAFAARALGLSVVIGAFLAGVLVAESKTAAIAKVIT
                     IPLRDVFSALFFISIGALMNISLIPLFIVPAMVLILSSFASKLIIVTGILQLRGYDKS
                     TSLRTGLGLSASRGEMSLIIAKGGQDVGAISSSVLPILGVVTVVTTFMAPYIIKLGNK
                     VKFSSGADDDL"
BASE COUNT          514 a          332 c          289 g          507 t
ORIGIN      
        1 aaaccaggaa acactctaga aagtctatca gagagagatt taaaatcaaa gggtttctcc
       61 attaatttta tttctttgac aaaggaacca tttaggatca atttgaggat tccgtgcccc
      121 tctacattat ccaataccac atcaagttta tcgtcgatac cagccaaagt tccattgtac
      181 gtcttttgat ctgaagtttc gatcgatacc ttcttgccca aaaactggac tgtctcttcc
      241 ccaaatcttc tgagaattac cgcagtcata tattttcata tggatatgac tttggtaata
      301 tatgtatgga ttcatgggaa tctttccaaa cccaatatat gttgtccaga taaaatcaca
      361 gcaaagagat ttcctaactt ctgaaaaagg ggtacctgga gaactatcaa tagagaatgg
      421 aatgaacttt aatattcaag aaatctctgc aaatcgccat tcttgtttac gagagagagc
      481 caatctacaa atcctacttg cggccttaat tttttttgta gcaatgagat tattttggcc
      541 gaggtctgcg cagggatttc tcctgtagta tcgatttcag cgatcttgtc ttttccaaaa
      601 gacatgattg aatcataaag cgatactcca agaatctcag aagcgatatt ctctcttgct
      661 ttttccgatg cataatgcct ttgctggaaa actgaaatta gttcataagg tgagcgtcgc
      721 aaaactatag ctatagttat tttaccggga tctattacat aaggtgccaa atgacccact
      781 aggatgagac cttctgcatt tgtttttgtc tcttgagcaa taagtttgct aacttttttt
      841 atatcaatgc ttattccgta tttatcatta tcatccaaaa ttgcgttgtt gactaaagct
      901 acttcattta tgtctattat ttttgatcct cgaaattttt tagcaataag tttagcgctt
      961 gtgtgtttcc ctacacctgg atttccggtg ataaccaatc taaatctatt tgtcataaat
     1021 ttacctaaga taaacataac ttgcttctgg gatggttaag gaaaagcccc caggaaaata
     1081 agttgcaagt attgaggggg gcgaaaagag tttcccttta ggttacaaat catcatcagc
     1141 accagaagaa aactttactt tattaccaag cttgattata tatggtgcca tgaaggtagt
     1201 gacaacagtg acaacaccca ggataggaag aactgaagac gatatggcac caacatcttg
     1261 cccacctttt gctatgatta acgacatttc tcctctggag gcggatagac caaggcccgt
     1321 tcttaatgat gtactcttat catatcctct taactgaaga attcctgtca ctatgataag
     1381 cttcgaagca aaagatgaca gaataagcac cattgcagga acaatgaaca aggggattaa
     1441 tgatatattc atcaatgctc ctattgaaat aaaaaatagt gctgagaata catcccttaa
     1501 tggtatcgtt ataacctttg ctatcgcagc tgtttttgat tcggcaacga gaactccagc
     1561 caagaaagct cctattacaa ccgaaagtcc caatgctctc gccgcaaatg ctaatccgaa
     1621 cgctaaacca agaatcacga ta
//
LOCUS       DATCMF010000259         2988 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_366107, whole genome shotgun sequence.
ACCESSION   DATCMF010000259 DATCMF010000000
VERSION     DATCMF010000259.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2988)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2988)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2988
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_366107"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..234
                     /gene="rpsI"
                     /locus_tag="VIL14_03260"
     CDS             <1..234
                     /gene="rpsI"
                     /locus_tag="VIL14_03260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HEY8522757.1"
                     /translation="FMGQAFASAVAISRALSGEAKGGRDPKDHPLSKSVRQEIRKKIT
                     EFDRHLLAGDPRQTESKKFGGPGARRKKQKSYR"
     gene            326..1015
                     /locus_tag="VIL14_03265"
     CDS             326..1015
                     /locus_tag="VIL14_03265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome assembly factor SBDS"
                     /protein_id="HEY8522758.1"
                     /translation="MTDNKLSIVRLILNADKFEILVKPDPALDYKLGKKVDISNILVS
                     DEIYSDANKGTRVPNEKLIKNFKTTDQIEIAKHILEHGDVNLTTDQRRRMVEEKKKQI
                     IQYISRNFIDPKTHFPHPPLRIENAMEQIRLVIDPFKRPEEQAKKIIDSLRKILPLKS
                     ENLQLIVTVPSQFSAQSYSIIKSIGDLKDEKWLQDGSLQVIIEINAGIRGTFIERINS
                     ITKGSAQIQEQ"
     gene            1149..1976
                     /gene="rrp4"
                     /locus_tag="VIL14_03270"
     CDS             1149..1976
                     /gene="rrp4"
                     /locus_tag="VIL14_03270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000178 - exosome (RNase complex)
                     [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exosome complex RNA-binding protein Rrp4"
                     /protein_id="HEY8522759.1"
                     /translation="MLEIKKRYVIPGDVIIEGNYRPLMNVIKKDNVIIATRIGIAESS
                     KDGIKVIPLSGVYIPRINDIVIGKIIDNSSLSWEVDINACFSAHLPAQDVFGRDFSPA
                     KDDMKKRLAPGDLVTARIITFDRTRDPMLTIQEKDLGKISNGEFLKISSTRVPRLIGK
                     RGSMIQTIEQATQTRILIGQNGILVVTGKNDEGIALAFKAIKLVEEEAHTSNLTQKVK
                     DLLNVSEEVTQTETNNSSVNNEQYVNNSNTDNNSRDMENDHSSNITTTKSPKEVQPN"
     gene            1995..2756
                     /gene="rrp41"
                     /locus_tag="VIL14_03275"
     CDS             1995..2756
                     /gene="rrp41"
                     /locus_tag="VIL14_03275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exosome complex exonuclease Rrp41"
                     /protein_id="HEY8522760.1"
                     /translation="MDQTILIDENGKRTDGRSIDDLRDVKITIGILKNADGSASIEFG
                     KNKIIVAVYGPREVHPKHMALPDRCVLRCRYHMSPFSTDTRKNPAPSRREVEISKVMR
                     EALEPAIMLEDYPRAAIDVFVEVLQADGGSRCAGIAAASVALADAGVNMRDLVAACAA
                     GKVNDKIVLDINDIEDKEGSADMPVAYLPNLEQITLLQLDGILTESQFNECVEKAIHG
                     CKMVYEIQRKALIEKYFGNDLPEGEEKELEENKEN"
     gene            2753..>2988
                     /locus_tag="VIL14_03280"
     CDS             2753..>2988
                     /locus_tag="VIL14_03280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exosome complex component Rrp42"
                     /protein_id="HEY8522761.1"
                     /translation="MSLSKKSPIVIEQLRKRQMFDLITNGKRLDGRSLEDIRDLEIEI
                     DIIKKADGSAKVRLGNSEVIAGVKVETGAPFEGL"
BASE COUNT         1181 a          383 c          551 g          873 t
ORIGIN      
        1 tttatgggac aagcttttgc aagtgcagta gcaatatcac gggctttatc aggagaagct
       61 aaaggaggac gtgatccaaa ggatcatcca ttgtcaaaaa gtgtaagaca agaaattcgc
      121 aaaaaaataa ctgaatttga tagacattta ctcgcaggag atcctagaca gactgaatca
      181 aagaaattcg gtgggccagg tgctcgaaga aaaaaacaaa agtcatatcg ttagttattt
      241 tatttttatt ttacattgaa aatatttttt caattagatt aaatctctat gcatatatat
      301 tacaaaatat catttttaat attctatgac tgataataaa ttatcaatag tccggttaat
      361 acttaatgca gataaatttg aaattttagt taaacctgac ccagcattag attacaagct
      421 aggaaaaaaa gtagatattt ctaatatttt ggtttcagat gaaatttatt cagatgctaa
      481 taaaggtaca cgtgttccta atgagaaatt aattaaaaat tttaaaacta cagatcaaat
      541 agaaattgca aaacatatac ttgaacatgg tgatgttaat cttacaactg atcagcgtag
      601 gcgaatggtt gaagaaaaga aaaaacaaat tattcaatac attagtagaa attttattga
      661 tccaaaaaca cactttcctc atccaccgtt aagaatagaa aatgcgatgg aacaaattcg
      721 tttagtaata gatcccttca agagaccaga ggaacaagca aaaaaaatta ttgattctct
      781 tagaaaaatt ttaccattaa aatcagaaaa tcttcaatta attgttactg tcccatcaca
      841 attttctgct caatcttata gtattataaa aagcatagga gatctcaaag atgagaaatg
      901 gctgcaagat ggatctttac aagtaattat agaaataaat gctggaatac gcggaacttt
      961 cattgaaaga ataaattcta ttacaaaagg atctgctcaa attcaagaac aataataaca
     1021 atgaataaat accatttatt aaaataggaa attggaactt gagaaaagat ataaaattgt
     1081 tatatagtga tacaaacaag atacttttct ttgttaatgt tactaataag gaggtattat
     1141 tataattcat gttagaaata aagaagagat atgttattcc aggtgatgtg attatagaag
     1201 gaaattatag accattaatg aatgtaataa aaaaagataa tgttataatt gctactagga
     1261 taggaattgc cgaatcaagt aaagatggca taaaagttat tcccttatca ggtgtttata
     1321 ttccaagaat aaatgacata gtcattggaa aaattataga taattcttca ttatcttggg
     1381 aagtagatat taatgcatgt ttttcagctc atcttccggc tcaagatgta tttgggcgag
     1441 atttttctcc tgcaaaagat gatatgaaaa aaagacttgc gccgggtgat ttggtaacag
     1501 caagaataat aacttttgac agaacgagag atccaatgtt aaccattcag gaaaaggatt
     1561 taggtaagat ttctaatggt gaatttttaa aaatatcctc aacacgtgtt cctcgtttaa
     1621 taggaaaaag aggttcgatg atacaaacaa ttgaacaagc tacacaaact agaattttaa
     1681 ttgggcaaaa tgggatactt gttgtaactg gaaaaaatga tgaaggtatt gctcttgctt
     1741 ttaaagctat aaaattagtt gaggaagaag cacatacctc aaatttaaca caaaaagtga
     1801 aagatttgct aaatgtttct gaggaagtaa cacaaacaga aactaataat agttctgtga
     1861 ataacgaaca atatgtcaac aatagtaata cagataacaa ttcccgtgat atggaaaatg
     1921 atcatagttc aaatattact actactaaat ctccaaaaga ggttcaacct aattaagaat
     1981 agaggataaa gattatggat caaacaattc taatagatga aaatggaaag cgtactgacg
     2041 gtcgatctat tgatgattta agagatgtta agattactat aggaatttta aagaatgcag
     2101 atggatctgc ttctatagaa tttggtaaaa acaaaattat agtagcagta tatgggccaa
     2161 gggaagttca tcctaaacat atggctcttc cagatcgatg tgtcttaaga tgtagatatc
     2221 atatgtcacc tttttcaaca gatactagaa aaaacccagc tccctcaaga agagaagttg
     2281 aaatttcaaa ggtaatgcgt gaagcattag aaccagcaat aatgttagag gattatccta
     2341 gagctgctat tgatgttttt gttgaagtat tacaggcaga tggtggctcc agatgtgcag
     2401 gaattgccgc ggcctcagta gctttagctg atgctggagt taatatgcga gacttggtgg
     2461 cagcatgtgc ggctggaaaa gtaaatgata aaatagttct tgatatcaat gacattgaag
     2521 ataaagaagg atcggccgat atgcccgttg catatttacc aaatcttgaa cagataacct
     2581 tattacaatt agatggaata ttaaccgaat ctcaatttaa tgaatgtgta gaaaaagcta
     2641 ttcatggatg taaaatggtt tatgaaatac aaagaaaagc attaatagaa aaatactttg
     2701 gaaatgattt gcctgaaggc gaagagaaag aattagagga gaataaggag aattgagttt
     2761 atcaaaaaaa tcaccaatag taatagaaca attacgtaaa cgacagatgt tcgatttaat
     2821 tactaatgga aaaagacttg atggtagaag tttagaagat ataagagatt tagaaataga
     2881 aatagatata ataaaaaaag cagatgggtc tgctaaggta agattaggta attcagaagt
     2941 aattgcaggt gtaaaagttg aaactggcgc accatttgaa ggattgga
//
LOCUS       DATCMF010000260         1796 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_60215, whole genome shotgun sequence.
ACCESSION   DATCMF010000260 DATCMF010000000
VERSION     DATCMF010000260.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1796)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1796)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1796
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_60215"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..262)
                     /locus_tag="VIL14_03285"
     CDS             complement(<1..262)
                     /locus_tag="VIL14_03285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522762.1"
                     /translation="MISTSASAPAKIILFGEHFVVYNQPIILASINKRMRIECKIEGD
                     KNNTLNIETNHFGKKTYPLSILENNNHNIVNDFFYPIIYILRK"
     gene            complement(274..1119)
                     /gene="amrB"
                     /locus_tag="VIL14_03290"
     CDS             complement(274..1119)
                     /gene="amrB"
                     /locus_tag="VIL14_03290"
                     /inference="COORDINATES: protein motif:HMM:TIGR04336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AmmeMemoRadiSam system protein B"
                     /protein_id="HEY8522763.1"
                     /translation="MRDLSCRSPYYAGSFYPKDKHELITLLHLCFKESLFGPKNKQTL
                     NTKIFGIIVPHGAYIFSGAISANAFFEIASRNIDTFILIGPDHHGIGKRISVTSEGYW
                     QTPLGDVLIDNTITNDLKRSCDFIEEDKIVHQIEHSLEIQVPFIQYSFGKSFTIVPVL
                     LRDQDIETSLLLGNLIAKYSTRKNVMIIASSCLTHYESNSSVQKKDFQIIKSIENLDI
                     ESFYQSLMNFKASVCGYGAIASLMRAVQILGSKKGELLRYATSGDVTSDNKNTVVGYA
                     SIAFI"
     gene            complement(1116..>1796)
                     /gene="rpsB"
                     /locus_tag="VIL14_03295"
     CDS             complement(1116..>1796)
                     /gene="rpsB"
                     /locus_tag="VIL14_03295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HEY8522764.1"
                     /translation="STNSLNKVENSVIEKYDDEINIENSDSENLEKMILSTGIRVGTP
                     VKTKSMSRYIVRANPEGLYILDISKTLYRIDVAAKFIGRTNITKVAITSAREYGKKPV
                     EKFCEATGATPLLGRFMPGTFTNPSLPKYMEPEIVIVTDPQADQQAVIEATRAGVPVL
                     AISNSDNVISKVDLVIPANNRGRKALATVYWLLAREVMKKQGKIKSDKEMKLTIDDFE
                     TKLVEEIV"
BASE COUNT          558 a          316 c          254 g          668 t
ORIGIN      
        1 ccttccttag aatgtaaata ataggataaa aaaaatcgtt tacaatatta tgattgttat
       61 tttccagtat tgataaagga tatgtttttt ttccaaagtg atttgtttct atatttagag
      121 tattattctt gtctccctct attttacact ctattctcat ccttttattt atagacgcca
      181 atataatcgg ttgattatat acaacaaaat gttctccaaa taagataatt tttgctgggg
      241 cagaggctga tgtactaatc attaccattt aggttaaata aaagcgattg aagcataacc
      301 aactactgta ttcttattgt ctgaagttac atctccacta gtagcatatc ttagtaattc
      361 tccttttttc gatcctaata tttgtacagc tctcattaat gatgcaattg ctccataccc
      421 acaaacggaa gctttaaaat tcatgagcga ctgataaaat gattctatat ccaaattttc
      481 aatacttttg attatttgga aatccttttt ctgaacactt gaattcgact cataatgggt
      541 taaacacgag gatgcaataa tcatcacatt tttcctagta ctgtattttg ctattaagtt
      601 tccgagtaac aatgacgttt ctatatcctg atcccgcaat aaaaccggga cgatcgtgaa
      661 agacttacca aatgaatact gaatgaatgg aacttgaatc tctaacgaat gttcaatttg
      721 atgaactatt ttatcttctt caatgaaatc gcatgatctt tttaaatcat tagtaattgt
      781 attatcaatt aatacatctc ctaaaggagt ttgccaatat ccttcactgg ttacagagat
      841 tcgttttcca attccatgat gatctggtcc aattaagata aaagtatcga tatttcgaga
      901 tgcgatttca aagaatgcat ttgcagatat tgctccagaa aatatataag caccatgtgg
      961 aacaataatt ccaaatattt ttgtgttaag tgtctgtttg ttttttggcc caaataaact
     1021 ttctttaaaa cataaatgaa gtaatgtaat caattcatgt ttatctttag gataaaacga
     1081 acctgcataa taaggagatc tacaagatag atctctcaaa ctatttcttc tacaagtttt
     1141 gtttcaaaat catctattgt tagtttcatt tctttatctg attttatttt tccttgtttt
     1201 ttcattactt ctctggctag taaccaatac acagtcgcta atgcttttct tcctctatta
     1261 ttagcaggta taaccaaatc tactttagaa ataacgttat cactatttga tattgccagc
     1321 acaggaaccc ctgcacgagt agcctcaatc acagcttgtt gatctgcctg tgggtctgtt
     1381 actatgacta tttcaggctc catatatttt ggtaaggaag gattagtaaa cgttccaggc
     1441 ataaatcttc ctaaaagagg tgttgcacca gtagcttcac aaaacttttc taccggtttt
     1501 ttaccatact cgcgggcaga ggttattgca actttggtaa tattggttct tccgatgaat
     1561 ttagctgcaa catctattct atacaatgtt ttactaatat ctaaaatata taggccttct
     1621 ggatttgctc taactatata tcgtgacatt gatttagtct ttaccggagt cccaacacgt
     1681 attccagtag ataaaatcat tttctctaaa ttttcggaat cagaattttc tatattaatt
     1741 tcatcatcat atttttctat tacagaattt tcaactttat ttaaagaatt agtaga
//
LOCUS       DATCMF010000261         2364 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_188496, whole genome shotgun sequence.
ACCESSION   DATCMF010000261 DATCMF010000000
VERSION     DATCMF010000261.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2364)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2364)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2364
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_188496"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..316)
                     /locus_tag="VIL14_03300"
     CDS             complement(<1..316)
                     /locus_tag="VIL14_03300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522765.1"
                     /translation="MVKDRERLEKQQRLYELLKQQHEAEKDEIIHYSTLLKEIENNLI
                     RNYINTLLTDGIKHIQYITQAMAKIEGASGSIHLTKEGINQSIEEEEESKNLLLECID
                     LAQ"
     gene            complement(564..648)
                     /locus_tag="VIL14_03305"
     tRNA            complement(564..648)
                     /locus_tag="VIL14_03305"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(610..612),aa:Leu,seq:gag)
     gene            756..989
                     /locus_tag="VIL14_03310"
     CDS             756..989
                     /locus_tag="VIL14_03310"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit N"
                     /protein_id="HEY8522766.1"
                     /translation="MLIPVRCFTCGGLIADKYSEYKERVKSGEGDAEVLDSLGIKRYC
                     CRRMFISSVETIYQVIPYYEVLRRRMSEMQSES"
     gene            1007..2254
                     /locus_tag="VIL14_03315"
     CDS             1007..2254
                     /locus_tag="VIL14_03315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enolase"
                     /protein_id="HEY8522767.1"
                     /translation="MPIITDIKARMIFNSRGAKTIEVDIISDDKFLGRASSPSGASVG
                     KHEAQSFKENSAEKSLDELNKNLSKFIGIESQDPRATYDILKNIDNSENYSKIGGSVA
                     YAISLASVESASKALEIPLFKLLKPSGDYKFPYPLGNILGGGSHAGPGTPDIQEYLIC
                     PIGASNIIEAIEINIKVHTQLKTILEKLDNNFTYGRGDEGAWAPNLNNDQAIEVVEKA
                     VSDSGYDSGKDVAIGIDFASSSFWNEKNKSYEYLRQGLVRSPNEQIDFVNNLIDKYNL
                     IYVEDPVHEEDFEGISIINQNNPQCLITGDDMLVTNKNRVIESMKYKSCSGAILKVNQ
                     AGSLYDALEFANECNKNQIKLITSHRSGESIDSHISEIAIATSSKLLKTGVIGGERVA
                     KLNQLVRLVEYDLIKGMSDVFTS"
BASE COUNT          796 a          351 c          453 g          764 t
ORIGIN      
        1 cctgagcgag atctatacat tcgagtaaca gatttttaga ttcttcttct tcctcgatgg
       61 attgatttat tccctccttt gtgagatgaa tgctgcctga tgctccttct attttagcca
      121 tggcctgagt gatgtattgt atgtgtttta tcccatcagt aaggagagta tttatataat
      181 ttctaattaa gttattttcg atttctttca ggagggtact ataatgtatt atttcatctt
      241 tttctgcttc atgttgttgt tttaataatt cataaagtct ctgctgtttt tccagtcgtt
      301 ctcgatcttt aaccaatatt ctgattaata ttatcataaa taaaaaagtg atggtagcag
      361 aatttgctta tcaatgaact ttgattgaaa aggattataa ttacaaagaa gaaatgagaa
      421 atggtgtcat atgataatac tagttgtcag tgtatttgtc accaacgtta tggtgacaag
      481 gcattttgta gaagatgttt agacaaacat aaagcttcac cttattataa cgttatgaaa
      541 aaattttgac tgatttatta tgatgcggga gatgggattt gaacccacga acccctgagg
      601 gataagagcc tcagtcttac gcctttgacc aggctgggcg acccccgctc agaatcaaga
      661 cgtcagagac tctaatttga atattacgag ttggtaatca atccagacat ttcaatgtta
      721 atggttttta tataattgtc agtttcttga ataatgtgtt aattccagtt agatgtttta
      781 cttgtggtgg tttaattgca gacaaatact ctgaatataa agaaagagtt aaatcaggag
      841 agggagatgc ggaggttctt gattcacttg gaataaaaag gtattgctgt agaagaatgt
      901 ttatttcaag tgtagagact atttatcaag taattcctta ttacgaggtc cttcgaagaa
      961 gaatgtcaga aatgcaatca gaaagttaag ttagttttga gacatcatgc cgattattac
     1021 cgatatcaag gctaggatga tttttaacag tagaggtgct aaaaccatag aggtagatat
     1081 catctctgac gataaatttc tcggacgggc atcttctcct tcaggtgcta gtgttggaaa
     1141 gcatgaagct caaagtttta aagaaaatag tgcagagaaa tctttagacg aactcaataa
     1201 gaatttgtca aaatttattg gaatagaatc tcaagatcca agagcaacct atgatattct
     1261 aaaaaatatt gataatagtg aaaattatag taaaataggt ggttctgttg cttatgcaat
     1321 aagtttagct tcagttgaat ctgcctcaaa ggctcttgag atacctctct ttaaactttt
     1381 gaagccctca ggggattata aattccctta tcctttagga aatattttgg gaggaggatc
     1441 ccatgccggg cccggaacac cagatattca agagtatctt atttgtccaa ttggagcatc
     1501 caatataata gaagccatag aaattaatat taaagttcat acacaattaa aaacaatatt
     1561 agaaaagtta gataataatt ttacatatgg tagaggagat gaaggggcat gggcccctaa
     1621 tcttaataat gatcaagcta tagaagtggt agaaaaggcc gtttccgata gtggttatga
     1681 ttcgggaaaa gacgtagcaa taggaattga tttcgccagc tcctcatttt ggaatgaaaa
     1741 gaataaaagt tatgaatatc ttagacaagg tttagttcga tctccgaatg aacagattga
     1801 ttttgttaat aaccttatag ataaatataa tttaatttat gtggaagacc ctgttcatga
     1861 agaagatttt gagggcatct ctatcatcaa tcaaaataat cctcaatgcc tcattacggg
     1921 tgacgatatg ttggtaacaa ataaaaatcg agtaatagaa tctatgaaat acaaatcctg
     1981 ttcaggagca attttaaaag ttaatcaagc tggttctctt tatgatgcat tagaatttgc
     2041 caatgaatgt aacaaaaatc aaatcaaact tataacctcc catcgatctg gagaatccat
     2101 tgattctcat atttcggaaa tagcaatagc tacctcttct aaattgttaa aaactggcgt
     2161 cattgggggc gaaagagtag ctaaattaaa tcaattagtg agattagtcg agtatgattt
     2221 aataaaaggg atgtctgatg tcttcacatc ttaatatgag cgagaataag gagatcatca
     2281 ataatgatat aataagtact gatccagcta attctaaaac caatgaaacc agtgaattat
     2341 ctgaagctga aaccagtgaa ttat
//
LOCUS       DATCMF010000262         1973 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_60463, whole genome shotgun sequence.
ACCESSION   DATCMF010000262 DATCMF010000000
VERSION     DATCMF010000262.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1973)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1973)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1973
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_60463"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            55..609
                     /locus_tag="VIL14_03320"
     CDS             55..609
                     /locus_tag="VIL14_03320"
                     /EC_number="2.7.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamide-nucleotide adenylyltransferase"
                     /protein_id="HEY8522768.1"
                     /translation="MSILFSYMFIGLFIGRFQPLHLGHIEAIKFALRQLSTLIIVVGS
                     AQISYELRNPFTAGERIKMIRNTLLNIDEIDVRNILIIPVPDINIHALWTHNLDLLVP
                     SYDVIFTNDPFTIALFQERQKKIVQPLLFERQKFSGTQIRENMVKKENWKDLVHFETA
                     KVIEEINGIERLNLLWKKYNEQHQ"
     gene            675..>1973
                     /gene="gatD"
                     /locus_tag="VIL14_03325"
     CDS             675..>1973
                     /gene="gatD"
                     /locus_tag="VIL14_03325"
                     /EC_number="6.3.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Glu-tRNA(Gln) amidotransferase subunit GatD"
                     /protein_id="HEY8522769.1"
                     /translation="MSTNNDDLQSILKDIKVGDIVNVVLNNSSIISGRLMPRYESSER
                     DHIVIKLANGYNIGIMLKKIKIITKVSSFSIETDELPKKNLYNSSSLKSQHKNDNDLS
                     QISNLPKIALISTGGTIASKIDYRTGGVTSVLSAKDLYTSIPELSLYASIDTEILFNE
                     YSENIGPMQWHLIANKVIEKINSGNYDGIIISHGTDTMSYTAAALSFALQDLPIPVII
                     VGAQRSSDRPSSDASSNLIASVIFATQLDYSGVFVAMHGSISDKEIYCHIGTRVRKNH
                     TSKRDAFKSIDISPIAIVQDDLVIIQKIPSHIILHKKKNRNKINKKFNIISKTKFDDR
                     VFLLKYYPGFNPILIENVQKLGYKVIIIEGTGLGHINKNCFSYLKEAIASGMLVFMTS
                     QCIWGRTNLNVYDTGRDLQKIGVIPLSNMLSETAMVKAMWL"
BASE COUNT          749 a          265 c          298 g          661 t
ORIGIN      
        1 ctataataaa aatctgctat attattaaat tgattattta gatcctttaa attaatgtct
       61 attctttttt cttatatgtt tataggttta tttataggtc gatttcaacc attacatcta
      121 ggtcatattg aagccataaa atttgcattg aggcagctct caacattgat tatagtagtt
      181 ggcagtgcgc agataagtta tgaactaaga aaccccttta cagctggtga aaggataaaa
      241 atgattagaa ataccttact taatattgat gaaattgatg tccgaaatat ccttattatt
      301 ccagtacctg atataaatat tcatgcatta tggactcata atcttgactt attagttcca
      361 tcctatgatg ttatttttac aaatgatcca ttcacaatag ctttatttca ggaaagacaa
      421 aaaaaaattg ttcagccttt attatttgaa agacaaaaat tttcaggaac ccagatcaga
      481 gaaaatatgg ttaaaaaaga aaattggaaa gacttagtac attttgaaac tgcaaaagta
      541 atagaagaaa taaatggtat agagagatta aatcttctat ggaaaaaata taatgaacag
      601 catcaataat caataactgt attaataata ttatttgata gaattaaatt ataagtatac
      661 gctaaattat agttatgtca accaataatg atgatcttca atccattctt aaagatatta
      721 aggtgggtga tatagttaat gtagttttaa ataatagctc tattatctca gggagactta
      781 tgccaagata tgagtctagt gaaagggatc atatagtaat taaactggct aatggttata
      841 atataggtat aatgttaaaa aagataaaaa ttatcaccaa agtttcttca ttttctatcg
      901 aaacagacga attaccaaaa aagaacctat acaattctag ttctttgaaa tcccaacaca
      961 aaaatgataa tgatctttca caaatttcta atttaccaaa aatagctcta attagtacag
     1021 gtggaacaat tgctagtaaa atagattatc gaacaggagg cgtcacttct gtcttatcag
     1081 ctaaagatct atatacttct attccagaac tttctcttta tgcttcaatt gatactgaaa
     1141 ttttatttaa tgaatatagt gaaaatattg gtccaatgca atggcactta atagctaata
     1201 aagtaataga gaagattaat tctggaaact atgatggtat aataatttct catggtactg
     1261 atacaatgag ttatactgct gctgcattaa gtttcgcgtt acaagacctt cctattcctg
     1321 ttataatagt tggtgcacaa agatcttctg atcgaccttc ttctgatgcg tcttccaatc
     1381 ttattgcatc agttattttt gcaacccaat tggattattc tggagtattt gtggctatgc
     1441 atggaagcat atctgacaaa gaaatatatt gtcatatagg tacaagagta aggaaaaatc
     1501 atacaagtaa acgcgatgca tttaaatcaa tagatatttc tccaattgca attgtacaag
     1561 atgatctggt cataatacaa aaaattcctt cacatataat tttacataaa aagaaaaata
     1621 gaaacaaaat aaataaaaaa tttaatataa tatcaaaaac taaatttgat gatagggttt
     1681 ttctattaaa atattaccca ggatttaatc caatattaat agaaaatgtg caaaaattag
     1741 gatacaaagt aataattata gagggaacag gtttaggtca tattaataaa aattgttttt
     1801 cgtatttaaa agaagcaata gcgtctggaa tgttagtttt tatgacctct cagtgtatat
     1861 ggggtagaac aaacctaaat gtctatgata cgggtagaga tctacaaaag attggtgtaa
     1921 taccattatc taatatgctt tctgaaactg ccatggtaaa agctatgtgg ctt
//
LOCUS       DATCMF010000263         2081 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_299580, whole genome shotgun sequence.
ACCESSION   DATCMF010000263 DATCMF010000000
VERSION     DATCMF010000263.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2081)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2081)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2081
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_299580"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            240..839
                     /locus_tag="VIL14_03330"
     CDS             240..839
                     /locus_tag="VIL14_03330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEY8522770.1"
                     /translation="MSSTGKFNESPNHFMVLDAVSRGMKKIDSISKVTKLSKDEVQLI
                     VNDLVNQKILIKNEKKGFFGNKKIELDIADTGIKILNTKKQELSEKSERLQQLYETGD
                     KSQVQSFMDSNRMWIPMMLFSGIMNMMFFASMMSFMGMAMNPAESAVTEGQVDQNTAG
                     AEDAAATADNSDSGASEMDTSGGGDAGFEGFDGGGFGDF"
     gene            1413..1706
                     /locus_tag="VIL14_03335"
     CDS             1413..1706
                     /locus_tag="VIL14_03335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522771.1"
                     /translation="MAKLKVYKRNPKFIDLVELVEDISSIGLVEGLEKYYNKPYEKEA
                     KSIVAGPSFLQFLNKLFHIQISAGDIINLESASHSKFYMLSLSGTWDEIIKLQ"
BASE COUNT          771 a          249 c          356 g          705 t
ORIGIN      
        1 agaggtttta tcttgataga aatatgttta agtaactata tcctatctca attgcaacta
       61 catctactta gattaattca agataatgca tgcttgaccg gtgggaaatc aacaaattag
      121 aaattgtaaa gaagactatt agtattattt tctatttttt aattccacat cattattata
      181 ttgtagagat gcaaatgcaa catttgattt aaatagtctt tttaccaaaa ttatagtata
      241 tgtcttctac tggaaagttc aatgaaagtc caaatcactt tatggtatta gatgcagtat
      301 ctagaggtat gaaaaaaata gatagtattt ccaaagttac caaactatct aaggatgaag
      361 ttcagctgat tgtaaatgat ttggttaatc aaaaaatatt aatcaagaat gaaaagaaag
      421 gtttctttgg taataagaaa atagaacttg atattgcaga tacaggaatt aaaatactta
      481 atacaaagaa acaagaatta tctgaaaaat cagagcgtct ccaacagtta tatgaaaccg
      541 gagataaatc tcaagtccaa agtttcatgg attctaaccg aatgtggata ccgatgatgt
      601 tattttcagg aattatgaat atgatgtttt ttgcttctat gatgtcattt atgggaatgg
      661 caatgaatcc tgcagagagt gcagtaactg aaggacaagt tgatcagaat acagcaggag
      721 cagaagatgc agcagcgaca gctgataata gtgatagtgg agcaagtgaa atggatacct
      781 caggtggagg tgatgcaggt tttgagggat ttgatggagg aggttttggc gatttttaat
      841 actcattaaa gcaaaaacaa attgtatgtt tttaaatact atttttaaat ttagtcaaaa
      901 ataagtgtag ctcaaacttt acgaattatt tataatcata tttccattca tattacaatt
      961 gtatgagttt aattaataga tagtaactat gatagattca tgaaattata atgagtattg
     1021 aggaaaatgt gagtattcaa tttcgaatcc caaagtgagt ttaaaagaac aaatatgtta
     1081 ttcaatttag tcaatatcct aaaaatcctc acaatgagaa aaggattcca tcaaacaata
     1141 atattttggc aaatacttgt tgtgcttaac ttaacaatat gaattaaatg ctagaaacaa
     1201 gaaaaatcac ggttgattgc agggataaca attcgaaaaa atcacatgtt gtctagctta
     1261 ttcttctagt ttaaattagt caggattctt tgtttttgaa ggcgaatttt ttgcttgaat
     1321 attactttgg agaaatttaa ataaatattg aataaaaagc aagataatat tatattatag
     1381 attattatta aatattttaa gaatattttc taatggcaaa actcaaagtg tataagagaa
     1441 atccgaagtt tatagacttg gttgaattag tagaagacat tagcagtata ggtttagttg
     1501 aaggcttgga aaaatattat aataaaccct atgaaaagga agctaaaagt attgtggcag
     1561 ggcctagttt tttacaattc ttaaataaat tatttcatat tcaaatctct gctggtgata
     1621 taataaattt agaaagtgca agtcatagca aattttatat gctttctcta tctggaacgt
     1681 gggatgaaat tataaaattg caatagtgta gagatttatt tgctgttaat tacaagaaga
     1741 ggagtgaaac attatagctt cagcgacttg agtggtatat gcgatacatg taatcagcaa
     1801 attatatagt attattaatt gattgatcca gttattaatt caaatatcta ctggtaaaaa
     1861 aattgttatg tatatatgat ttaggttcta atattataat tatttgagac tggatatttt
     1921 ataatatcca ttgaatgttt aattattgcc ctttatgcct tgtgcaacca atatggaata
     1981 gcatccaagc ccacattgct cacaaatggg ttttaaccct ttactagtag cacttccaat
     2041 acaacatggc tttttgactc ttcccatatg atctaaggaa a
//
LOCUS       DATCMF010000264         2101 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_188923, whole genome shotgun sequence.
ACCESSION   DATCMF010000264 DATCMF010000000
VERSION     DATCMF010000264.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2101)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2101)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2101
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_188923"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(48..869)
                     /gene="pstB"
                     /locus_tag="VIL14_03340"
     CDS             complement(48..869)
                     /gene="pstB"
                     /locus_tag="VIL14_03340"
                     /EC_number="7.3.2.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein
                     PstB"
                     /protein_id="HEY8522772.1"
                     /translation="MEKTYTNDVITRLHQDNRGLTNSFKLRIKNIDAGYYNKQILKNI
                     NLTIKENSVTAFIGPSGCGKTTLIRCINRMHEMTPGAYSKGEIHLDKIDVYDPKVNPV
                     MIKRRIGMVFQKPNPFPTMSIFDNVAAGLKLNGVKDKKIINEIVIESLESAGLWQEVK
                     DELNKPGMSLSGGQQQRLCIARALAMQPEIILMDEPTSALDPSASSKIEELIHELKKY
                     LTIVIVTHNMQQAARVSDFTAFMYLGELVEFGETKQIFEKPKKELTERYISGKFG"
     gene            complement(995..1837)
                     /locus_tag="VIL14_03345"
     CDS             complement(995..1837)
                     /locus_tag="VIL14_03345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HEY8522773.1"
                     /translation="MNILNNILEKKTIERLSLIISTQKLFDLILHNQKNIRIVDTRSF
                     NEYLNGHVPGAINIELMQYHWNDTSKQGIKGFNRQMRHLFSNIGINGKTFLIFYDNIS
                     GPSAARGVWLSLYFSHKKVAMLDGGFTCWEKENRPIENKTESFSYSKIDKPIDETILA
                     DYRTLLQSLRSKKENQIVIDSRSFKEYSGEQIRALRGGHIPRAINIDWKENIFIDKFK
                     SLDDIEKLYSGFSKNQALITYCQGGYRAANTFVILKELGFKNVKMYLGSWNEWGNNYR
                     LPIE"
BASE COUNT          653 a          349 c          298 g          801 t
ORIGIN      
        1 aaataatttt attattggac aatatagttt gattattctt tgatagttta accaaatttt
       61 ccagatatat atctttcagt taattctttt tttggctttt cgaaaatttg ttttgtttct
      121 ccaaattcta ctaattcacc aaggtacatg aacgctgtaa agtctgatac tctagctgct
      181 tgttgcatgt tatgtgttac tattactata gtaagatatt tctttaactc gtgaattagt
      241 tcctctattt tagaagaggc actaggatcc aatgcagatg tgggttcatc cataagaata
      301 atctctggct gcattgcaag tgctcgagcg atacacagcc tttgttgttg gccaccagac
      361 aagctcatgc cgggtttatt taattcgtct tttacctctt gccataagcc agcgctttca
      421 agactttcta ttactatttc atttattatt tttttatctt ttacaccatt aagttttaat
      481 cccgcagcaa cattatcaaa tatactcata gttggaaagg gattgggttt ttgaaatacc
      541 ataccaattc ttcttttgat cattactgga ttgactttag gatcatagac atctatttta
      601 tccaaatgaa tctctccttt agaataggcg ccaggcgtca tttcatgcat tctattaatg
      661 catcttatta gagtagtttt accacagccc gaaggtccga taaaagcagt aacagaattt
      721 tcttttatgg tcaagttaat attttttaag atttgtttat tgtaataccc agcatcgata
      781 tttttaatac gaagtttaaa actattagtt aaacctctat tatcttgatg aagacgagta
      841 attacatcat tagtataggt tttctcaatg ttagtagacg ttttccgatc atagaataat
      901 actcatttac atagataaga taacactata tgtacactat aggatcatat agaactatac
      961 cataacaata aaaaaatatt tactttattg ttccttattc aattggtagt ctataattat
     1021 tcccccattc attccaggag cccagataca tcttaacatt tttaaaacct aattctttta
     1081 atatcacaaa agtatttgcg gctctatatc ctccttggca atatgtgatg agtgcttgat
     1141 ttttcgaaaa gcccgagtat aacttttcaa tatcatccag agatttaaat ttatcaataa
     1201 aaatattttc cttccaatct atattgatag cacgaggtat atgaccacct ctcaatgctc
     1261 gtatttgttc tccactatat tctttgaacg atcgtgaatc aattactatc tgattttcct
     1321 ttttagatct taaagattgt agaagagttc tataatcagc caaaattgtt tcatcaattg
     1381 gtttatcaat tttggaataa ctaaaagact cagttttgtt ctctatgggc ctgttttctt
     1441 tttcccaaca ggtgaatcct ccatctaaca ttgcaacttt cttgtgggaa aaataaagcg
     1501 aaagccaaac tcctcttgca gcagatggac cagaaatatt atcataaaaa attaaaaagg
     1561 tttttccatt aattcctata ttggaaaata aatgcctcat ttgtcgatta aagcccttta
     1621 tgccttgttt tgaagtgtca ttccagtgat actgcattag ttcgatattt attgctcctg
     1681 ggacgtgtcc attaagatat tcattaaagg atcttgtgtc gacaatccgt atgttcttct
     1741 gattgtgtaa aattaaatca aataattttt gggtggatat aattaagctc aatctttcta
     1801 ttgttttttt ttctaatata ttgtttaaga tattcaactc ttattcgatg ggttaaggga
     1861 ctatgattta atgtgtaaaa acttttttct agtattgagt tcttaataat ttttacagag
     1921 gattaattac aaaagctact aaaaattttt ccgattactt acttcactac aaaatactag
     1981 tagaaatgaa taggatctct attcgccaat ctatataata aaaaaatcaa ttttttctta
     2041 cagatgtcga attcaataaa tagaaattta aagaaagttt tagttattgg cttaggtcaa
     2101 t
//
LOCUS       DATCMF010000265         1595 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_366742, whole genome shotgun sequence.
ACCESSION   DATCMF010000265 DATCMF010000000
VERSION     DATCMF010000265.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1595)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1595)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1595
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_366742"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..255)
                     /gene="gvpD"
                     /locus_tag="VIL14_03350"
     CDS             complement(<1..255)
                     /gene="gvpD"
                     /locus_tag="VIL14_03350"
                     /inference="COORDINATES: protein motif:HMM:NF018756.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gas vesicle protein GvpD P-loop
                     domain-containing protein"
                     /protein_id="HEY8522774.1"
                     /translation="MTKNYDISFKIPDDLLQFLNNETYSLLIKGEPGAGKTALCLTIL
                     KALNIKNNFFYISTRVSPNKLFYYFKWLNKYLKIKYPNNHN"
     gene            complement(351..1442)
                     /gene="dph5"
                     /locus_tag="VIL14_03355"
     CDS             complement(351..1442)
                     /gene="dph5"
                     /locus_tag="VIL14_03355"
                     /EC_number="2.1.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004164 - diphthine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0017183 - protein histidyl modification to
                     diphthamide [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diphthine synthase"
                     /protein_id="HEY8522775.1"
                     /translation="MLCFIGLGINGYSGLSLLAKETLQKCHFIYIERFTSYIDDDDIR
                     QLKILLNNGNKRTQIVPRWFIEDARSIISQSQENNVAILTYGDPFMATTFIELYVRAK
                     KNLIEIKIIHGASGISSLIGEIGLHNYKFGRTTTIMSDPLSAISVYNTIYENLRVGNH
                     TLILTEYNNNNENDFFFLDPARAIDMLLEVEENVRYEIISDELFIIVASRIGKKDQNI
                     VGGKVKSIKKIDFGKGPHSIIVTGHLHFTEIDSIMSLYPNKDPPFDNTQFFRHLAVTM
                     LEKYLPKAKDALKKMKSYLESERNSSSILDEQYKEMDNVLENAEYYLSDAERFFNQNK
                     FELGILSIGYAEGLIDALRFQKNINPWLS"
BASE COUNT          539 a          234 c          206 g          616 t
ORIGIN      
        1 attatgatta tttggatatt taattttaag gtatttatta agccacttaa agtaataaaa
       61 taatttatta ggtgatactc ttgtagaaat ataaaagaaa ttattcttta tatttaatgc
      121 tttaagaatt gtcaaacata gtgcagtttt tcctgctcct ggttctcctt taatcaataa
      181 ggaataagtt tcattattta aaaattgtag cagatcatca gggattttaa aagaaatatc
      241 gtaattttta gtcattgccc aacctcactt aacttaataa ttactctgtt ataataacag
      301 ttcttaatat caaaatataa aaaatatcct taaaataatg aggtattaaa ttaagataac
      361 cacggattga tatttttttg gaaacgtaat gcatctatta atccttctgc ataacctata
      421 ctaagtatcc ctaattcaaa tttattttga ttaaaaaatc tttccgcatc cgataaataa
      481 tattcagcat tctctaagac attatccatt tctttatact gttcatcgag tatagaggaa
      541 gaatttcttt cactttcaag atacgatttc atctttttca aagcatcttt tgcttttggt
      601 aaatattttt ctaacattgt tactgcaaga tgtcgaaaga attgagtatt atcaaagggt
      661 ggatctttat taggataaag agacattata gaatcaattt ctgtaaaatg aagatgacct
      721 gttactatga tagaatgagg gcctttgcca aaatctattt tttttatgga tttaactttt
      781 cctcctacga tattttgatc cttttttcct attcttgatg ccactataat aaataactcg
      841 tcagagataa tttcataacg aacattctct tcgacttcga gaagcatatc tatagccctt
      901 gctgggtcta gaaagaaaaa gtcattttca ttgttattat tgtattcagt taagattaaa
      961 gtatgatttc ctactcttag attttcgtag attgtattgt agacacttat tgcggacaaa
     1021 ggatctgaca tgattgttgt agttcttcca aatttgtaat tatgcaatcc aatttcaccg
     1081 atcaaagatg aaattccaga agcaccatga attattttta tttcaattag gttttttttt
     1141 gctcttacat aaagttcaat gaaagtggtt gccataaaag gatcaccata agtcaatatt
     1201 gctacattat tctcttgtga ttgagagata atagatcttg catcttcaat aaaccaacga
     1261 ggaactattt gtgtacgttt attaccatta tttagtaaaa tttttagttg tctgatatca
     1321 tcatcatcaa tataacttgt aaatctttct atatatataa aatgacattt ttgcaaagtt
     1381 tcttttgcta aaagacttaa tccagaataa ccatttattc caagtccaat aaaacataac
     1441 atactatgta ttaaatcgct attgttatct ctaatattat ttattcttga tattatacat
     1501 tcttgacata tgaaataaag atcttttgta gacttcgatc cctgaaagat attcttctat
     1561 atttacatgt tcattaacac tatgagaaga atgtg
//
LOCUS       DATCMF010000266         1508 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_60913, whole genome shotgun sequence.
ACCESSION   DATCMF010000266 DATCMF010000000
VERSION     DATCMF010000266.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1508)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1508)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1508
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_60913"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(455..1027)
                     /locus_tag="VIL14_03360"
     CDS             complement(455..1027)
                     /locus_tag="VIL14_03360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522776.1"
                     /translation="MESPIQKPPTISLRSNIWIVIPIGALILAIVTANLLLLNYVHVF
                     TSILWTGTDIFMAFLLGPILRKVSLSTRKEIISWLMPKMVFYMPTVSSVTTTAGYFLA
                     SKMGLITLESPVVYWITMVLIIVTVMLIQGLGILLPTNIRVYHELRKKEPDMTKIQRL
                     MRRYVKVVATQAILQFVIIFIMANFATGFF"
     gene            complement(1262..>1508)
                     /locus_tag="VIL14_03365"
     CDS             complement(1262..>1508)
                     /locus_tag="VIL14_03365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522777.1"
                     /translation="SLMEESGLVNLESKCQNLEMELDKLLEASFPNHGNKEKIQHLFK
                     EDVKQDNLGMRSFLKENNNNNKIYFYFPISMLLGYNK"
BASE COUNT          530 a          223 c          223 g          532 t
ORIGIN      
        1 aagccaagga catgcaattc cgtctacttt tgcatgttct cgtgttatcc atttcataat
       61 tagtctttaa tgaaataaat agtatttgaa gtaatttttc tttagtaaat gtagtagtat
      121 gatacaatgc tacggatagc tataaaaatg ccttaatctt caaaagcaaa ttgtaaattc
      181 ataaagtatt tccatgaacc tctcctagag tttgaccaat gaagtgtatt gtatgtgtat
      241 gtaagagata atttctgtaa ttatatgaat tagagtgtat agtataattc aatcaacaat
      301 caaatatgtt aaaataatat aataataata agactaattg agagtcattg ataataaaaa
      361 ggctagaagg cttatttctc attattacag cttaaggtaa cataataata aagttttagt
      421 caaaaaatta ttaataatat tagtctatta ttatctaaaa aaacccagta gcaaagtttg
      481 ccattatgaa tattattaca aactgaagaa ttgcctgagt tgcaacaact ttgacatatc
      541 tacgcataag tcgctgaatt ttggtcatat caggttcctt tttccgtaac tcatgataga
      601 ctcttatgtt agtcggaaga agaataccaa gtccttgaat aagcattacc gtgacaataa
      661 ttaataccat ggtaatccag tatactactg gagattctaa agtaatcaaa cccatttttg
      721 aagcgaggaa gtaacctgca gtagttgtaa cagatgatac agttggcata taaaaaacca
      781 tttttggcat aagccatgaa atgatttcct tacgtgttga aagacttacc tttcgaagta
      841 tggggccaag caagaatgcc ataaagatat ctgttccagt ccataatatt gaagtaaata
      901 cgtgaacgta gtttagaagc agaaggttag cagtcactat cgctagaatt aaggcaccaa
      961 ttggaataac aatccatatg tttgagcgta atgatattgt cggcggtttt tgtattggag
     1021 actccaattg aatatgatat cttgcataac ttattaatat aaccttttat ttatgttgaa
     1081 tcaataacta gtacataact gttatgcttg taaatggatt atacaatgat gtttttagtt
     1141 atatttcctt tattatgtat caaatataat tgcagtaaca tattctccag ataatctctt
     1201 ataagacagg agaagagaca ccttctacaa tctatctctt ctcatagctt aattaaaaaa
     1261 attatttatt atatcctagt aacatagata taggaaagta aaagtaaatt ttattattgt
     1321 tattattttc tttaagaaaa cttctcattc ccaaattatc ttgttttaca tcttctttaa
     1381 atagatgttg aattttctct ttatttccat gattgggaaa tgatgcctca agtagtttat
     1441 ccaattccat ttctagattt tgacatttac tttccagatt gaccaatcct gactcttcca
     1501 tcaaactt
//
LOCUS       DATCMF010000267         1676 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_61172, whole genome shotgun sequence.
ACCESSION   DATCMF010000267 DATCMF010000000
VERSION     DATCMF010000267.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1676)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1676)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1676
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_61172"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..361
                     /locus_tag="VIL14_03370"
     CDS             <1..361
                     /locus_tag="VIL14_03370"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019133.1"
                     /note="catalyzes the formation of L-tryptophan from
                     L-serine and 1-(indol-3-yl)glycerol 3-phosphate; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HEY8522778.1"
                     /translation="GILHGMQTYLLQDKMGQISATHSISAGLDYPGVGPEHSYLKEIK
                     RVNYKSCTDDDAIKAFVILSEKEGIIPALESAHAISYGMKLAKKMKKSEDIVITLSGR
                     GDKDVEVVQNYINGIRD"
     gene            364..1203
                     /gene="trpA"
                     /locus_tag="VIL14_03375"
     CDS             364..1203
                     /gene="trpA"
                     /locus_tag="VIL14_03375"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004834 - tryptophan synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HEY8522779.1"
                     /translation="MYKSNSVSKKKNRIDNKFDELKSKNEKALICYVVAGFPDIMSSE
                     HIITSLINGGADIIEIGIPFSDPIADGSTIQYAIQNSLISGTTPDMCLELASRIRKTF
                     PNIPLIIMTYSNILYRKGYIQFAQKAKESGIDGFIIPDIPIEESKEYLNTMHNIGMST
                     IFLVSPNTSEKRLKMISRICTGFLYAISVYGTTGERQGFDEYTIESIKRVKNVTADKL
                     PLAVGFGISNPQHVKYMIDAGADAVIIGSAIIKKIIKEIENKERMLNILNKFIYELKN
                     SCR"
     gene            complement(1245..1571)
                     /locus_tag="VIL14_03380"
     CDS             complement(1245..1571)
                     /locus_tag="VIL14_03380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522780.1"
                     /translation="MCVCDFVLACSIDDSPSYFTYDNHDTMIIIQSKLSARANHSDFY
                     YIEPYIELLISHESLHFVIKRIEGSLESEKLDNLEVIVHRNAKNYQVTVNNMLFASDN
                     SGLVLE"
BASE COUNT          659 a          214 c          282 g          521 t
ORIGIN      
        1 tggaattcta catggaatgc agacctatct tttacaagat aaaatgggtc aaataagtgc
       61 tactcatagt ataagtgcgg ggttagacta tcctggagtg ggtcctgaac attcatactt
      121 aaaagagatt aaaagagtca actataaatc atgtaccgat gacgatgcaa tcaaagcatt
      181 tgtgattctt tcagaaaaag aggggataat tcccgcctta gaatcagctc atgcgataag
      241 ctatgggatg aaattagcta aaaaaatgaa aaaatcagaa gatatagtca ttacattatc
      301 aggtagaggt gacaaggatg tagaggtagt acaaaattac attaatggaa ttagagatta
      361 aatatgtata agagtaatag cgtatcaaaa aagaagaaca gaatagacaa taaatttgat
      421 gaattaaaga gtaagaatga gaaagcactt atttgttatg tagtggctgg ttttcctgat
      481 ataatgtcat ctgagcacat cataacttca ttaattaatg gaggagcgga tattatagaa
      541 attggaatac cattttccga tcctattgca gatggctcaa caattcaata tgcaattcaa
      601 aattcactga tatctggcac tactccggat atgtgcttag aattagcttc aagaataaga
      661 aagacttttc caaatattcc tttaatcatt atgacctatt ccaacatatt atacagaaaa
      721 ggatacattc aatttgcaca aaaagctaaa gaaagtggca ttgatggttt tataattcca
      781 gacataccga tagaagaatc taaagaatat ctaaatacaa tgcataatat aggaatgtct
      841 acaatttttt tagtatcacc gaatacttca gaaaaaagat tgaaaatgat tagcagaata
      901 tgtacaggtt ttttgtatgc tatatcagtt tatggtacca caggagaaag acaaggattt
      961 gatgaatata ccatcgaatc aataaaaagg gtgaagaatg ttactgcaga taagcttcct
     1021 ctagctgtag gatttggaat aagtaatcca caacacgtta aatatatgat tgatgctgga
     1081 gcagatgctg taattatagg aagtgcaatt attaaaaaaa ttattaaaga aatagaaaat
     1141 aaagagagaa tgttaaatat attaaataaa tttatttatg aactaaaaaa tagttgtaga
     1201 tgataatgat gatgatgatt atgatgataa tatattgcat ccaattattc taatactaaa
     1261 cctgaattat cagaagcaaa taacatattg tttactgtga cttgatagtt ttttgcattt
     1321 ctatgaacta ttacctcaag attgtctaac ttttctgatt caagagagcc ttctatcctt
     1381 tttatgacaa aatgaagtga ttcatgggat attagtaatt ctatataagg ctcaatgtaa
     1441 taaaaatcag aatgatttgc acgagcactt aattttgatt gaataattat catagtatca
     1501 tgattatcat atgtaaagta gctaggagaa tcgtctatag aacatgctaa tacaaaatca
     1561 caaacacaca ttaaattatc atattattat tctaacggat tattttatac atctatcgct
     1621 ttgaaatcta aagatgagag atctattttt taagaaatta atacaataaa aataaa
//
LOCUS       DATCMF010000268         1810 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_61452, whole genome shotgun sequence.
ACCESSION   DATCMF010000268 DATCMF010000000
VERSION     DATCMF010000268.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1810)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1810)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1810
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_61452"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            59..730
                     /locus_tag="VIL14_03385"
     CDS             59..730
                     /locus_tag="VIL14_03385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="Snf7 family protein"
                     /protein_id="HEY8522781.1"
                     /translation="MSFNKRWVKPTTNEGVANKLLENKFMDNIKSPVPLKPKIEDAQK
                     KLQLQISKLDGISNKMHEKDHLIFKRIVYAMQNHDSQYAKVLSNELSQIRKMNKMVSS
                     AKLAMEQIQLRLNTITELGDVVVTLSPAMSVIKGIQGGLSSMMPEADQSFGQISDLLS
                     SIMNDSSQIPNTEISGTGMISEDSMKILEEASMVVEQSMKDKFPDLPSSSAEVDQESS
                     EASIY"
     gene            complement(752..1072)
                     /locus_tag="VIL14_03390"
     CDS             complement(752..1072)
                     /locus_tag="VIL14_03390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522782.1"
                     /translation="MKIVEVSIKVSDESYEEFLSYLKSLPVNMILFGLRFAHKRYVAE
                     TGGYLFPGRKSIIKKETDMLSKEQAQWRLDNWKKMIANYREKGYSYPTISRIKKKIEN
                     ILIN"
     gene            complement(1298..>1810)
                     /locus_tag="VIL14_03395"
     CDS             complement(1298..>1810)
                     /locus_tag="VIL14_03395"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEY8522783.1"
                     /translation="EHFGIENDIDIHISSLSKGLGCFGGYVASSKLITDLLVNKSRQF
                     IYTSAIPEHLCVAAITAISILKKNKNIQKKFFIRIKWFINQLNQLGFNIGTTSSHIIP
                     IIIGDEKVAFNFSKELFKKGIFIQAIRYPTVSLGKARLRISLNMSLQQSHLNYVINCL
                     DKLGKKNNLI"
BASE COUNT          630 a          267 c          257 g          656 t
ORIGIN      
        1 agttacaatc tcatttttaa acaaatttgt ttcatagtta ttggtgaata gatagccgat
       61 gtcatttaac aaaaggtggg taaaacctac aactaatgaa ggtgtagcaa ataaacttct
      121 tgagaataaa tttatggata atataaaatc tccagttcct ttaaaaccca aaattgaaga
      181 tgctcaaaaa aaattacaac ttcaaatttc taaattagat ggtatttcta ataaaatgca
      241 tgaaaaagac catttgattt ttaagagaat tgtttatgca atgcaaaatc atgatagcca
      301 atatgcaaaa gtattatcaa atgagctctc tcaaatcaga aaaatgaata agatggtgag
      361 ttccgcgaaa cttgcgatgg agcaaatcca attaaggcta aatacaatta ctgaattagg
      421 cgatgtagtt gttacattga gtcctgcaat gtctgttata aaaggcattc aaggaggttt
      481 atcatctatg atgccagaag ctgaccaatc ctttggacaa atatcagatc tattgtcaag
      541 tataatgaat gattcttcac aaattcccaa tacagaaata tctggaacag gtatgatctc
      601 tgaagactct atgaaaatat tagaagaggc tagcatggta gtagaacaaa gcatgaaaga
      661 caaattccct gatttacctt catcgtcagc agaagtagat caagagagtt cagaagcctc
      721 gatatattga ggaatagaaa atagtttcta tctaattgat aagaatattt tcgattttct
      781 tttttattct tgaaattgta ggatagctat atcctttctc tcggtaattc gcaatcattt
      841 ttttccagtt gtctaatctc cattgagctt gttctttact taacatatcc gtctcttttt
      901 ttattatact ttttctacca ggaaataaat atcctccagt ttctgcaacg tatctcttat
      961 gcgcaaatct taacccaaat aagatcatat ttacgggaag agactttaaa tacgataaaa
     1021 attcttcata tgattcgtca gacaccttaa tacttacttc tactattttc ataagtgcct
     1081 tgtaaagatt tatcttttta tttctttcta aagtacataa agagaagtaa aaccatctca
     1141 atataattaa tattataaag atatttttga tcaaattgcc ttgacaaatt ttttaacttt
     1201 atttttgtat tggtatggag atatttttac gcgctaattt attttgtatt tttatatcaa
     1261 tatatgattt gttatataat tatgtaccag taacatgtta tattaagttg tttttttttc
     1321 ctaatttgtc tagacaatta atcacataat ttaaatgaga ctgttgtaga gacatattaa
     1381 gagaaattct taagcgagct tttcctaaag ataccgtagg atatctaatt gcttgaataa
     1441 atataccttt tttgaataat tcctttgaga aattgaaagc taccttctca tcacctataa
     1501 taatgggaat aatgtgacta gatgttgttc ctatattgaa ccctagttga tttaattgat
     1561 ttataaacca ctttattctt ataaaaaatt ttttttggat atttttattt ttttttaaaa
     1621 ttgaaattgc agtaattgca gctacacata aatgttctgg aattgcagat gtatatatga
     1681 attgccgtga tttatttact aataagtctg taatgagctt agatgaggct acatagcctc
     1741 caaaacatcc taagccttta cttaaactac taatatgaat atcaatatca ttttcaattc
     1801 caaaatgctc
//
LOCUS       DATCMF010000269         1727 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_645606, whole genome shotgun sequence.
ACCESSION   DATCMF010000269 DATCMF010000000
VERSION     DATCMF010000269.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1727)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1727)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1727
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_645606"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(554..1093)
                     /locus_tag="VIL14_03400"
     CDS             complement(554..1093)
                     /locus_tag="VIL14_03400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522784.1"
                     /translation="MSSKQTLNNKKSRKPRKNYKEFPKKENNITIEEQQSQRKFPEPI
                     IYQGLNQRNIILRDDDDDFKHHLEQTMREARAITNYFLELHKDMVNSYSLEYTNLIQN
                     IFNSSRDDFTIPERVTDYPFDIQNMYSVLSSNRDNSLKLIDNIITKNMYTFIKSIEVT
                     QRFYKDVIESYLNCIKKVN"
     gene            complement(1227..1487)
                     /locus_tag="VIL14_03405"
     CDS             complement(1227..1487)
                     /locus_tag="VIL14_03405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522785.1"
                     /translation="MQKEKINRPFFKYWKSITYDLIQKAIESQNKVIGRLLFLLRVNN
                     SNAVILRKIIPYVFSCGSIIFIGYVLMNIFTNYPPRVIGISP"
BASE COUNT          585 a          223 c          228 g          691 t
ORIGIN      
        1 accaatatta atgaaaacat tgtaagtagc ataactatat ataatttata aattaagtta
       61 aaataaatac cttattattt tgggtacatt aaaaattctt gctactatgc ccatttatct
      121 ctaaattttt acatatctat aatttttaga atattatttt agaatggggc tgttcttatt
      181 atttcaattg tatatttaat aaatcacgtc aggagcaata gacgtgtata gtcctatatt
      241 ttgtttcaga cgatcatcag ccccaattgt atatagttat taaataatat aagaattata
      301 gaaaactcta ttaaaataaa attaatttat taattagagc ctatggcttt gaatagacat
      361 atccatatcg ttagttactt ccccgatatt cctaagccct caaactgagg ggagtcaact
      421 gatttgtctc aattttgtat aataaaaatg aaaacatgaa tctaaataaa aagactaaca
      481 tttaatgtaa tcatattttc ctctatttct gtaggatgtt tatagatttt aagacagaag
      541 aaataagcta gttctagttt acttttttta tgcaattcaa gtaactctca attacatctt
      601 tgtagaatct ttgtgtaact tcaattgatt tgataaatgt atacatattt tttgtaataa
      661 tattgtcaat caattttagt gagttatctc tattactact taaaacggaa tacatatttt
      721 gtatgtcaaa tggatagtct gtaacccttt caggaatagt aaaatcatcc cttgatgaat
      781 taaaaatatt ttgtattaag ttagtatatt ccaagctgta ggaatttacc atatccttgt
      841 gaagttctag aaaatagttt gtaattgctc ttgcctctct catagtctgt tctagatggt
      901 gtttaaaatc atcatcatcg tctcttaata ttatatttct ttgattcaaa ccttgatata
      961 ttataggttc agggaatttt ctttgtgatt gttgttcttc tattgttatg ttattttcct
     1021 tttttgggaa ctctttgtaa ttcttccttg gtttccttga ttttttatta tttaaggttt
     1081 gtttcgagga caatacgaag gtatgaacat tctcacttaa aaaaagtagt ataaaaaata
     1141 tgaacactat tagttaaaaa aaagtatttc attgaatatt atcattaaat tacgctttag
     1201 tttacatatt tggatattaa tcctaactaa ggactgatcc ctattactct tggaggataa
     1261 ttagtgaaaa tattcattaa tacatatcct ataaatataa ttgaaccgca tgaaaaaaca
     1321 taaggaataa tttttcttaa tataactgca ttgctattat ttactcttaa caagaaaaga
     1381 agccttccaa taactttatt ctgcgattct attgctttct gaattaaatc atatgtaatg
     1441 gatttccaat atttaaaaaa aggtctattt attttttcct tttgcataat atttattgat
     1501 ctttatatgc aataggttct tttaagtttt tgtatatagc gaggataaaa tggtaaatta
     1561 ttgtttttga atattctaga gggaacaaac tctaaaagac acgtttttgg ccacaatatc
     1621 atctagtctt attctttttg tataggtgag aattcttttg gatgaacatg tgattttata
     1681 tgttcatggc aaaaatgaat tgaacaaata ggacatttat tagtcgc
//
LOCUS       DATCMF010000270         2147 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_102528, whole genome shotgun sequence.
ACCESSION   DATCMF010000270 DATCMF010000000
VERSION     DATCMF010000270.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2147)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2147)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2147
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_102528"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(856..1041)
                     /locus_tag="VIL14_03410"
     CDS             complement(856..1041)
                     /locus_tag="VIL14_03410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522786.1"
                     /translation="MNLVYGTFLIALVFAITFTSLLSPFDQVVIQVDSFQEQIEPIPP
                     SNNTNQTTPIVIFQSVS"
     gene            complement(1520..2044)
                     /locus_tag="VIL14_03415"
     CDS             complement(1520..2044)
                     /locus_tag="VIL14_03415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522787.1"
                     /translation="MSFQEDEKEIVDLSDKQQQKERLSSIEFNIGDYMNNINYKSNFP
                     LKENRTPPRNFDDVDSYKHTIKTMKEIKYNFLEEHKNIIDTYYSIYSNRMNKIFEYNL
                     NNLISMERYSKRYSKIKRNIIDNQTNTTRIIDDIVVSNMDTFIKSIELVHKFYFDVFQ
                     SYYNYITRVKNSKK"
BASE COUNT          740 a          297 c          261 g          849 t
ORIGIN      
        1 taaagctcca actaaaacat cgctaacttt acttaccatc aagttaaaat ttgttggatt
       61 gataagatct ttaatcaatt aacatcgact tcctttatta ataaatacac aacaaaggta
      121 tttaatctat tatgttttac ccttctctct ttgagcacta gcaactccat aatgttttct
      181 atttgtcttt ttttaataaa atgaaaatct actggtttac gccctttatt ctctgtaagt
      241 ttttattgct ttataatatt gacttaaatt tcccgtttct aggttttacc ctcaatctat
      301 acccacaaca tggacaccag atattatgcc attcaataaa aatatcgcat gtttgacaac
      361 gtttttgccc taataaataa cgtttcccgt ttctcggtct aactgcttta tgacgttgac
      421 atattccttt gcaggtcatt tttcactata atgtacaaga agtaataata atatatcgat
      481 gttatactgt tgtatttata cacaatagtt attcatgtta tattttaaaa aattgaagat
      541 taatagaaaa tttattgtct ttgatgagac taaagtcaat attctataat taatccctac
      601 ggttatttat ggatgaagac aaagccttta gtgaaaactt ttcttgtata ttcatatttt
      661 tactttgaat agattaaaag cctatcacct tgcaagtgtt ccttgagaag aaagttaaca
      721 gccatataaa acaggtatta tgtgaatttt atgttctggc taaaatttct tgaggtcgtc
      781 cattaattca gttatagtag ataataaaat aaataatcaa aatggaatag gttcaaaagc
      841 actaggatcg aggtttcagg aaacagactg aaagattaca atgggagtag tttgattagt
      901 attgttggaa ggaggaatag gctctatctg ttcttgaaat gaatctactt gaataactac
      961 ttgatcaaat ggagataaca atgatgtaaa agttatagca aagactaaag ctattaaaaa
     1021 tgtcccataa actaaattca tattcatctt tatcaatctt aacatataca atataatata
     1081 taggatttat acatagtctt tcctattgta tgatattatt ttttatatat aacagtatga
     1141 tagttgcttc ttttaaaacc catatcaatg aaagaaatat caatataggt aatgctctgt
     1201 tagattcggt atatcgttaa ttttgctcat gatattcgta agtttatttt tttgtactcc
     1261 aattatattt gagtggtaaa aatattggat aaattctact tcctttaatt gcacttttcc
     1321 ccttgtctgc tattggtttt ataatttgca accattttga tagaacaaaa atttattatg
     1381 ttatatcatc tatatcttaa taacagtagt taaatgcaat acatctagta attccggtaa
     1441 taacagaagt tattactaat tcaagtattt aaaaacaaaa tcttaaagta taaaaaaagt
     1501 aatattaaaa aataaaatat tatttcttgg agtttttgac ccttgttata taattataat
     1561 aactttgaaa aacatcaaag taaaatttgt gaacaagttc tatcgattta ataaatgtgt
     1621 ccatattact tactactatg tcatctatta ttctagtagt attagtttga ttatcaatta
     1681 tgtttctttt tatcttacta tatcttttag aatatctttc catagatatt aagttattca
     1741 aattatactc aaatatttta ttcattctat tagaataaat cgaatagtat gtatctatga
     1801 tatttttatg ttcttctagg aagttgtact ttatttcttt catagttttt attgtatgtt
     1861 tatagctatc tacgtcatca aaattccttg gtggagtcct attttctttc aagggaaaat
     1921 tagatttata atttatatta ttcatataat ctcctatatt aaattcaata gatgatagac
     1981 gttctttttg ttgttgttta tcacttagat caacaatttc tttttcatct tcttgaaaag
     2041 acataaatat tgttgtactt tcttccttaa aaacattata ataaagacaa tttgcacttt
     2101 aacattgtta caaaaaaaag ccaaaagaca ttttatgcag taatctc
//
LOCUS       DATCMF010000271         1737 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_368030, whole genome shotgun sequence.
ACCESSION   DATCMF010000271 DATCMF010000000
VERSION     DATCMF010000271.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1737)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1737)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1737
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_368030"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..600)
                     /gene="sufC"
                     /locus_tag="VIL14_03420"
     CDS             complement(<1..600)
                     /gene="sufC"
                     /locus_tag="VIL14_03420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly ATPase SufC"
                     /protein_id="HEY8522788.1"
                     /translation="MVFLQVKDLNVSIDGKKILNGLNLEIDKNEVHAIMGVNGSGKST
                     FANVLLGHPKYSVTSGEIIVKGKSILELSTDERAKQGIFLGFQYPIEISGVGYSHFLR
                     NAYNTLNKSLTEDQNDREVFLTVKEFHEYVKKNLNYVGLDQSFLGRYLNEGFSGGEKK
                     RSEVMQMLVLRPNIAILDEPDSGLDIDAVKAVAEAINKLI"
     gene            complement(743..1243)
                     /locus_tag="VIL14_03425"
     CDS             complement(743..1243)
                     /locus_tag="VIL14_03425"
                     /inference="COORDINATES: protein motif:HMM:NF012355.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="plastocyanin/azurin family copper-binding
                     protein"
                     /protein_id="HEY8522789.1"
                     /translation="MGLNEKIIFLGILGMGAIIGVISYYLFSDLPPTPENTKSIYRQD
                     LPPPSTAQASSKTESKVNPATVKADVTLTILEGASTQGNPDYDPDELSVKKGNVIKVE
                     NVDSIPHTVTNGAGPNDPNSAKIFDTSLIMGGQAGILQTEEIDAGEYAYYCTVHPYMT
                     GTLKIE"
BASE COUNT          611 a          263 c          205 g          658 t
ORIGIN      
        1 aatcaattta tttattgcct cagcaactgc ttttactgca tcaatatcta aacctgagtc
       61 tggttcatct aatatagcta tatttggcct taataccaac atttgcataa cttcagatct
      121 tttcttttct cctccggaga aaccttcatt taaatacctt ccaagaaatg attgatctaa
      181 gcccacataa tttagatttt ttttaacata ttcatgaaat tctttaacgg taagaaaaac
      241 ttctctatca ttttgatctt ctgttaaaga cttatttaaa gtattataag catttcttaa
      301 aaaatgacta taacctacac ctgaaatctc aatgggatat tgaaatccta aaaatattcc
      361 ttgtttagct ctttcgtcag tagataattc taagatactt tttcctttaa cgataatttc
      421 tccagaagta acagaatatt ttggatgccc taagagtaca tttgcaaagg tacttttccc
      481 tgatccattt acacccataa tagcatgtac ttcattttta tcaatttcta aatttaaacc
      541 atttaatatc ttttttccat cgatacttac attcagatct ttaacctgta aaaaaaccat
      601 agtctaatat tcttattaat tacatataaa gcatatcatt atctgaaaat ttagataaat
      661 tatctaaaaa aacatgtata accttgaaaa tttcaataaa tgtcttgtaa tataaaaata
      721 aagtgtatga ttattttatt agttactcaa tctttaaggt acctgtcata tagggatgaa
      781 ctgtacaata atatgcatat tcacctgcat caatttcttc agtttgcaaa attcctgctt
      841 gtcctcccat tattaaactc gtatcaaata tttttgctga atttggatcg ttgggtcctg
      901 caccatttgt aactgtatga ggaatcgaat caacattttc gactttaatt acattgcctt
      961 ttttaactga aagttcatct ggatcatagt ccggattacc ttgtgttgaa gccccttcaa
     1021 ggattgttaa tgttacatcc gctttaacag ttgcaggatt tacttttgat tctgtctttg
     1081 aactggcttg tgctgtcgat ggaggaggaa gatcttgtct atagattgat tttgtatttt
     1141 cgggtgtagg tggaagatca gaaaatagat aatatgaaat tactcctata attgcaccca
     1201 ttcctaatat tcctaaaaaa attatttttt cattaagtcc catttaactg atcatggatt
     1261 cgaataaggt cttaattaat ttttttatat aaataatcaa gtttgagcaa attttaatta
     1321 tttattacct ttagagtaaa tcaagattgt tatatcttta aattgaaaat gaagataaaa
     1381 aaatattata aaattacagt ctattaatta acaagatttt catttatgat aataataata
     1441 aacttaaaaa cgatacaatt attatcatat ttataattct aaaaatagtg aaagaaaatg
     1501 cttattgata caaaatgttc tctctgtaac aatcaaattt ctttatttag atataaagca
     1561 atgaaacaat ggaatatcca aggatattta tgtaatgatt gttattctaa caagttaaca
     1621 gaacactata tttctacaaa agaaaatagt aactataata aaaaaactga tttataattt
     1681 actaactaat ctttatgatt agtatattga attatttatt cagactttat cgataaa
//
LOCUS       DATCMF010000272         2718 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_368243, whole genome shotgun sequence.
ACCESSION   DATCMF010000272 DATCMF010000000
VERSION     DATCMF010000272.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2718)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2718)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2718
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_368243"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..958
                     /locus_tag="VIL14_03430"
     CDS             <1..958
                     /locus_tag="VIL14_03430"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY8522790.1"
                     /translation="NGKIVKSLGDRLLCYFLNFSDLNNEKAIEDVIQCGLEILEKRED
                     MNHELSKKNNNLPLVESYKISLDYGVVDLALAGDNYQLDIFGSAVNLCSKINSSSAHN
                     EIIIGNNFYRILKSFPNILNNYNFINKGEFKVTENIGYPTYNIKRRDHTLLENDDTNG
                     THSIMMEKKLNSYAEDGFIENKNKKREGFFFHKKNKNKRIIILDDDEDVLFTYRSFLK
                     DYDYHIACFTDPTLTLNYIKDLSEFNDLLLILDIRMKNLNGFQLHQQIKAIDPTIKIL
                     FVTGLDILDEMLSIIPGISKNHIMRKPVDRKIFTNTVKNMLS"
     gene            1129..1518
                     /locus_tag="VIL14_03435"
     CDS             1129..1518
                     /locus_tag="VIL14_03435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522791.1"
                     /translation="MIDSDRSSWSNKDIDGYYPITIIKDSNLQLSLLPSVSSQHQYSS
                     PITIAIWKDERLEHLDISRDLIELLQINGFTTERILEYGPSQIAKIIGIDDFFAQIIF
                     NETTTTITKRLLLRFLKQGKDFIVIIF"
     gene            complement(1539..2444)
                     /locus_tag="VIL14_03440"
     CDS             complement(1539..2444)
                     /locus_tag="VIL14_03440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522792.1"
                     /translation="MIIKFTYGYILGIVIGILLITSNNIIAAQDQNNTTITTTAKQNQ
                     SNTTTIAGQNQFNPVPFNEIPLVVVNYTYGQYKFGADFSIDFGGLPVVEQDISATSVP
                     NMRLDKDDTNLHLELQCDSNDICDTSLAPESVKVYLVDYTVQDIHIAENSIPTIQLGS
                     NNCGSLSIEDCANFDFSIPGNIILGNYKIIVEMSFDEAEWIFINPVEIVDSTYPSNNN
                     VTVRCDDLAIDLISWDLLIGGTDEPTRTNIEDILGDENVSPALITDIIDPPLERLVGE
                     TKDKCNNLDENVKRVLEGVNFEFLP"
BASE COUNT         1033 a          360 c          392 g          933 t
ORIGIN      
        1 taacggtaaa attgtaaaaa gtctaggtga tcgtttattg tgttatttcc taaacttttc
       61 agatcttaat aatgaaaaag caattgaaga tgtaattcaa tgtggattag agattttaga
      121 aaagcgagaa gatatgaatc atgaattatc gaagaagaat aataatttac ctctagtaga
      181 gagctacaag attagtttag attatggggt agtagactta gccttagctg gagataatta
      241 tcaactagat atatttggtt cggcagtaaa tctttgttca aagataaatt cttcttctgc
      301 tcataacgaa ataattattg gaaataattt ttatagaatt ttaaaatctt ttcctaatat
      361 tttaaacaat tataatttta taaataaggg cgaattcaag gtaacagaaa acattggata
      421 tcctacatac aatataaaaa gaagagatca taccttgtta gagaatgatg atactaatgg
      481 tacacactcg ataatgatgg agaaaaagtt gaattcatat gctgaagatg gttttataga
      541 aaataagaat aaaaaaagag aaggcttctt tttccataaa aaaaataaaa acaaaagaat
      601 aattatactt gatgatgatg aagatgttct ttttacttat agaagctttc taaaagatta
      661 tgattatcat attgcttgtt ttaccgatcc tactcttaca ctaaattata ttaaagacct
      721 ttcggaattt aatgatttat tgttaatact tgacattcga atgaaaaatt tgaatggatt
      781 tcaattacat caacaaataa aagctataga tccaacaatt aagattctgt ttgtaacagg
      841 tttggatatc ttagatgaga tgttaagtat aattcctgga atatcaaaaa atcacattat
      901 gagaaaacca gttgatagaa agatatttac aaatactgta aaaaatatgt taagttaaag
      961 agatgatatt attattttta aatactattt ccaaactaca aaattgtatc aaaatcagtt
     1021 gactatcctt tgaggctgtt cttagtagta ggattcaata catctttgaa gtataccttg
     1081 aggggataaa tcactttaat acatacgatg tctcttttat attataatat gatagatagc
     1141 gatagaagta gttggagcaa taaagatatt gatggatatt atccaataac aataataaaa
     1201 gactccaatt tgcaactatc tcttctacca tcagtatcat ctcaacatca atactcatca
     1261 ccaataacaa tagcaatatg gaaagatgaa agattagaac atctagatat ttcaagagac
     1321 ttgattgaat tattacaaat caatggtttt acaactgaaa ggatattaga atatggacct
     1381 tcacaaattg caaaaataat aggaatagat gatttctttg cacaaataat atttaatgag
     1441 acgacgacga caataacaaa acgattatta ttaagatttc tcaaacaggg aaaagatttt
     1501 attgtgatta ttttctaatt tacagacata aaaaaagatt atggaagaaa ctcaaagttt
     1561 actccttcaa gaaccctttt tacgttctca tcaagattat tacatttgtc tttagtttca
     1621 cctactagtc tttcaagagg tggatctatt atatcagtta ttaaagcagg ggatacattc
     1681 tcatcaccta gtatatcttc aatatttgtt ctagttggct catctgttcc acctattagt
     1741 agatcccacg atatgaggtc gatagcaaga tcatcacatc taactgtcac attgttgtta
     1801 cttggatatg ttgaatctac tatttcaaca ggatttataa atatccattc tgcttcatca
     1861 aaagacattt ctactataat tttatagtta ccaagtatta tatttccagg aatagaaaaa
     1921 tcaaagtttg cacaatcttc tatagaaaga ctaccacaat tgttgcttcc aagttgtatt
     1981 gttggaatag aattttctgc aatatgaata tcttgtacag tatagtcaac taaatatact
     2041 tttacagact caggggctaa actggtgtca catatatcat tactatcaca ttgcaattca
     2101 agatgtaaat tagtatcatc tttatctaat cgcatattag gaacagacgt agcactaata
     2161 tcttgttcaa ctactggaag acctccaaaa tcaatagaaa aatcagctcc aaatttgtat
     2221 tgaccataag tataattgac tacaactaat ggtatctcat taaatgggac agggttaaat
     2281 tgattctgtc ctgcaatagt agtagtatta ctttgattct gtttagcagt agtagtgata
     2341 gtagtattgt tttgatcttg tgcagctatg atattattac ttgttattaa taatatacca
     2401 attacaatac ctaatatgta tccataggta aattttataa tcaataacta aattagtcca
     2461 ataataatat aaaaataaat tcctctttac taaagcagga aaattttatg atcaagtttg
     2521 aaagcaaata aaattaataa taacaaatgt tattttataa aatgtctctt atatgatctt
     2581 ttaataaata ttcatattgg taaaaaaact tttcggcgcc gaaaattttg ataaatggta
     2641 gactagtcgc atagataata agatataatt agtctaattg tagattattt acattattgc
     2701 ttttagaata aggataac
//
LOCUS       DATCMF010000273         1869 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_63873, whole genome shotgun sequence.
ACCESSION   DATCMF010000273 DATCMF010000000
VERSION     DATCMF010000273.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1869)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1869)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1869
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_63873"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..775)
                     /gene="prf1"
                     /locus_tag="VIL14_03445"
     CDS             complement(<1..775)
                     /gene="prf1"
                     /locus_tag="VIL14_03445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003747 - translation release factor
                     activity [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor aRF-1"
                     /protein_id="HEY8522793.1"
                     /translation="MSFSNDKESKWDSVKRYKLNKMINKLGNITGHGTELVTVYIPPR
                     RPIYDIVSQLKNEAGTASNIKSDLTRNHVQDALSRTVEHLKLYKEPPENGLVIFCGAI
                     PTGKGIGTEKIEIYSVVPPKAVQINLYRCDDHFWIDHLKDMMKDDKVIGILSLDTQEA
                     GFGILTGDRWEVVESLTSGVAGKHRQGGQSARRFERLRDNELNEYYRRVADYAQKIFI
                     DEYDVKGIIIGGPGPTKEGFIREEYLDYRLQNNVIAVLDS"
     gene            963..1517
                     /locus_tag="VIL14_03450"
     CDS             963..1517
                     /locus_tag="VIL14_03450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEY8522794.1"
                     /translation="MLPSLEYIKQTRQKLGITQRRLASLTGISTSMINQIETGRCKPS
                     YDTAKKIFEVLSTLEGKSAKKAGDICSKKIIFAQKDDILYSVLEKMRLNFVSQVPVFE
                     GQKIVGIVSEDNLAKKMVENDEKNIKNITIANVMEPSPPVVDSVTPAKALVPLIRFAK
                     CILVTEKGNVTGIITTTDILKMLE"
BASE COUNT          643 a          327 c          278 g          621 t
ORIGIN      
        1 aggaatctaa aacagcaata acattatttt gcaatctata gtcaagatat tcttctctaa
       61 taaagccttc tttggttgga cctggtcctc caataattat tcctttgaca tcatattcat
      121 cgatgaagat tttttgcgca tagtctgcaa ctctgcgata atattcattc aattcgttat
      181 ctcttaatct ttcaaatcta cgggctgatt gacctccttg tctgtgtttt cccgccaccc
      241 cagaagtcaa tgattcaacc acctcccaac ggtctccagt aagtataccg aaaccagctt
      301 cttgggtatc taatgacaat atacctatta ctttgtcatc cttcatcatg tcctttaaat
      361 ggtcaatcca aaaatgatcg tcacaacgat aaagattaat ttgaactgct ttgggaggta
      421 ctacggaata gatctcaatc ttttccgtcc ctatgccttt gccggtaggg atagctccac
      481 aaaagataac aaggccattc tctggaggct ctttatacaa tttaaggtgt tctacagttc
      541 tacttagtgc gtcttgtacg tgatttctag ttaaatctga tttaatgtta gaagcagttc
      601 ctgcttcatt ttttaattgg gagacgatat cataaatggg tcttcgtgga ggaatataca
      661 cagtaacaag ctccgttcca tggcctgtaa tattgcctag tttattaatc attttattta
      721 atttataacg tttaacagaa tcccatttac tttctttatc attagaaaaa gacattaata
      781 gaaatctttt ttctcacaca gactatttta ttgttattat gagtctgaaa ataacattat
      841 caaattacaa caaaaattag tataaatcta gatgattatt gttctaaaaa atataaatct
      901 cttttgtgtg attataattt aggatttata gattataaat ctcatgtggt ataatctaac
      961 taatgcttcc tagtttagaa tacattaaac aaacaaggca aaagttagga attactcaac
     1021 ggagacttgc atcattaaca ggaattagta catcaatgat caatcaaatc gagactggaa
     1081 gatgcaagcc cagttatgat acagcaaaaa aaatttttga agtattaagc actttagaag
     1141 gtaaatccgc aaaaaaagca ggagacattt gtagtaaaaa aatcatattt gcccaaaaag
     1201 atgatatact ttatagtgta cttgaaaaaa tgaggcttaa ttttgtaagt caggtaccag
     1261 tgtttgaggg tcaaaaaatt gtaggaattg tatctgaaga taatttagca aagaaaatgg
     1321 tagaaaatga tgaaaaaaat atcaaaaata taacaattgc taatgttatg gagccttctc
     1381 ctcccgtagt cgactcggtt acccctgcaa aggctctagt accgcttata aggtttgcaa
     1441 aatgtatctt agttactgaa aaaggaaatg taacaggcat aataactaca actgatatat
     1501 tgaaaatgtt agaatgataa tcatcttatc acaagtatta aagcttttct agtccaatac
     1561 aacaatctgc acatccgatg cattccttgc ataaatttac ttctgtggat tcaccaacta
     1621 ctgttccaca caaaacacac tctttttcac tcattataaa tctaaaaagg atataacata
     1681 tttaaattct acttgactat atctaattca tattatcgtg aaaatcagac aataaaccat
     1741 tattgtaatc ataggcgcac tacagaaata tttccagcac tctggtacct ttaaggaaat
     1801 tataccttat agtttttctt aactaaaatt tttaacgtgt aatttagtta aagtcaagag
     1861 actattttg
//
LOCUS       DATCMF010000274         1680 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_301276, whole genome shotgun sequence.
ACCESSION   DATCMF010000274 DATCMF010000000
VERSION     DATCMF010000274.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1680)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1680)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1680
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_301276"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            134..976
                     /locus_tag="VIL14_03455"
     CDS             134..976
                     /locus_tag="VIL14_03455"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase"
                     /protein_id="HEY8522795.1"
                     /translation="MEYANQNVLVDTQWVEDHVNDNNVRIAEVDYDPKANYNLGHIPN
                     SVLFDWRKDINDPLNRNIISKDDCSILLQKSGINNDTILVLYGDFNNWFAAFAFWVFE
                     YYGMTNVKIMNGGRKKWLEEDRPISKDIPNFPMGNFKPSEPNPALRAFLNQVRESLNS
                     DQIKRIDVRSPPEFSGEITAPPEYPTEHAQRGGHIPGAVNIPWAKAVNDDGTFKSADE
                     LTKLYQTVGITPDKEIITYCRIGERSSHTWFVLKHLLGYPDVKNYDGSWTEWGNMIDN
                     PIEK"
     gene            complement(980..>1680)
                     /locus_tag="VIL14_03460"
     CDS             complement(980..>1680)
                     /locus_tag="VIL14_03460"
                     /inference="COORDINATES: protein motif:HMM:NF013743.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522796.1"
                     /translation="KLVIERFRFMIIDNCNFPDNLLYDPDSFVWIDVSNENCIKIGII
                     PILSFISGKLKSIKLKKGGTNIEKGKSLGSIESPKYFGIVRSPINGKIKEINELILSK
                     PKQVNDSPYELGWLSTIVPSNLDKDLNGLKKIGQCYIKFKSLIDEFHVRCFKAYPDHE
                     MYELGTECAATLTKLDELLTKIDIGEIVYLASDDITADLELTRWSKENSQSILEIRKE
                     GPIFHFLVRKEKNN"
BASE COUNT          585 a          258 c          258 g          579 t
ORIGIN      
        1 acaaattatt aacaagatta tttatattta tatatattta acacccttaa attataaatt
       61 ttcttcgtaa ataaaataaa gcatttcttg ttttttataa aaaatttata acagagttta
      121 ctattttaaa tttatggaat atgcaaatca aaatgtttta gtcgatacac agtgggtaga
      181 ggaccatgta aatgacaata atgttcggat agctgaagtt gactatgatc caaaagcaaa
      241 ttataatctt ggtcatatcc ctaattcagt tttatttgat tggagaaaag acataaatga
      301 tcctcttaac agaaatatta tttcaaaaga cgattgttca attttattac aaaaatctgg
      361 aataaataat gatactattc ttgtattata tggagatttt aataattggt ttgctgcttt
      421 tgctttttgg gtttttgaat attatggtat gacaaatgta aaaatcatga atggaggaag
      481 aaaaaaatgg cttgaagaag atagaccaat ttcaaaagat atacccaatt ttcctatggg
      541 aaattttaaa ccttctgaac ccaatcccgc tctaagagca ttccttaatc aagtaagaga
      601 atcgttaaac tccgaccaaa taaagaggat cgatgttaga agtccaccag agtttagtgg
      661 agaaataact gcacctcctg aatatcctac agaacatgcc caacgaggag ggcacattcc
      721 aggagcggtt aacataccat gggctaaagc agtaaatgat gatggtacat tcaagtcagc
      781 tgatgagctt acaaaattat atcagacggt gggtatcact ccagataagg aaataattac
      841 atattgtaga ataggggaac gttcttctca tacatggttt gttttgaaac atctccttgg
      901 atatccagat gtaaagaatt atgatggctc ttggacagaa tggggaaata tgattgacaa
      961 tccaattgaa aaataaaatt caattatttt tttcttttct gactagaaag tgaaagatgg
     1021 gaccttcttt tcttatttct aatattgatt gagaattctc tttggaccat ctcgtcaatt
     1081 ctagatctgc agtaatatca tccgatgcca aataaacaat ctcacctata tcaattttag
     1141 tcaatagctc gtccaatttt gtaagagttg ctgcacattc tgtaccaagt tcatacattt
     1201 catgatctgg atatgctttg aaacaacgca cgtgaaattc gtctataaga gatttaaatt
     1261 taatatagca ctgccctatt ttttttaaac cattaagatc tttatccaaa ttagatggga
     1321 caattgttga caaccaacct aattcatatg gactatcatt gacttgttta ggtttagata
     1381 atatcaattc gttaatttct tttatctttc cattaatggg agatcgtact attccgaaat
     1441 attttgggct ttctatagaa cctaagcttt tacctttctc aatattagta cctccttttt
     1501 tgagtttaat tgattttagc ttacctgaaa taaatgataa gataggtatt attcctatct
     1561 ttatgcagtt ttcattagaa acatctatcc atacaaaact atcaggatca tataataagt
     1621 tatcaggaaa attacaatta tcgataatca taaatctgaa gcgttctata accaatttta
//
LOCUS       DATCMF010000275         2342 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_64165, whole genome shotgun sequence.
ACCESSION   DATCMF010000275 DATCMF010000000
VERSION     DATCMF010000275.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2342)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2342)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2342
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_64165"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            305..1360
                     /locus_tag="VIL14_03465"
     CDS             305..1360
                     /locus_tag="VIL14_03465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase"
                     /protein_id="HEY8522797.1"
                     /translation="MKSAKIIEINQPLQIQENKTPKPKGSQVLVKVQSSGVCHSDIHL
                     WEGGYEGPQGQFLKTTDRGVKYPLTPGHEIAGIIDGLGEQTEGFAKNEKVLVYPWIGE
                     GLCPACRTGEENLCDKPRSLGIYNDGGYAEYVLVPSYKYLVKLGDEIDTDTSAPLSCS
                     ALTAYGAVKNGNLTPNDNVVIVGTGGLGLMAIQLAKAITGSRIIALDRDDNKLKAAKE
                     NGADDIINSQKEDAVKAVMELTGRMGADAVIDFVNASSTVETDLNFLRRRAKLVLVGL
                     FGGELKLNLIAMPTRSYKLIGSYTGSMNDLIELVSLAKRGIIKPIISNKFKLDEATKA
                     LKMLRDGKILGRGVINP"
     gene            1357..>2342
                     /locus_tag="VIL14_03470"
     CDS             1357..>2342
                     /locus_tag="VIL14_03470"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEY8522798.1"
                     /translation="MTNSAELITINPTTEKILNKYTIMTKENVSTVVKKARDAYKEWR
                     KDFDKRIDSLYHVANELRKNKENLSRTATNEMGKAIKEARAEIDKCVWAIEYFADNGK
                     NFIHEESFNTDARKSIIKFEALGVIASIMPWNFPYWQALRFAAPSLVAGNTIVLKPAS
                     ATMQCGLEIEKTFDKAGLAEGIFKTVIGDSSVAEILVDSDVNAVTFTGSVPVGAKVAQ
                     RATSQLKKTVLELGGSDPFIVCADADIEKASTGAVKGRFINCGQSCIASKRFIVVKNI
                     ANEFIEKFIQKTEKLKVGDPSSDDTDIGPLVNAKALKTIDSQVNDSIKEGAEV"
BASE COUNT          878 a          316 c          464 g          684 t
ORIGIN      
        1 gaaaattacc tggaatatta ggaatattag aaacaaccat gaaataataa ttatattctc
       61 tatctaattt gcgttacaat aacaaaatat atatttatat tctttctaat aggcattttt
      121 gaaggaattt ctgatatttt atatgttatt aatactatta ttatcattta ttagtttcca
      181 taatgataat gttttttctt accaatatta aatagataat caaatagata atcttaatat
      241 attttgtgtt aatttaatat tttattgaag tcaaaaaaaa atttattaat ggataaactt
      301 agaaatgaaa tctgctaaaa ttattgaaat taatcaacct cttcaaatac aagaaaataa
      361 aactccaaaa cctaaaggtt ctcaagtgtt ggtaaaagtt caatcatctg gagtttgcca
      421 cagtgatatt cacttatggg agggaggata tgaaggtcca caagggcaat ttttgaaaac
      481 tactgacaga ggagtaaaat atcctttaac cccaggacac gaaattgcag gaataataga
      541 tggtctaggc gaacagacag aaggttttgc aaagaatgaa aaagttcttg tgtatccatg
      601 gattggggaa gggctctgtc ctgcatgcag aacaggagaa gaaaatcttt gtgataaacc
      661 tagatcctta ggaatttata atgatggagg atatgctgaa tatgttttag tacctagtta
      721 caaatactta gttaaacttg gagatgaaat tgatactgat acaagtgctc ctttatcatg
      781 ttctgcactt acagcatatg gtgctgtaaa gaatggcaat ctgacaccta atgataatgt
      841 agtaattgtt gggacaggag gactgggatt gatggctata caattagcaa aggcaataac
      901 aggttcaaga ataattgctt tagatagaga tgacaataag cttaaagcag caaaagaaaa
      961 cggagcagat gatattatca attcacaaaa ggaagatgct gtgaaagcag tcatggaatt
     1021 gactgggaga atgggggctg atgcagtaat tgattttgtt aatgcttcct caacagtaga
     1081 aactgatttg aattttctta gaagaagagc gaaattggta ttagtcggac tttttggtgg
     1141 tgaattaaaa ttgaatctaa ttgcaatgcc cactagatca tacaaattaa ttggatctta
     1201 tactggaagt atgaatgatt taatagaact tgtttcatta gcaaagagag gcataataaa
     1261 accgattatc tcgaataaat tcaaacttga tgaggccaca aaagcattga agatgttaag
     1321 ggatggtaaa attcttggta gaggtgtaat aaatccttga caaactctgc tgaattaata
     1381 accataaatc cgacaacaga gaaaattctc aacaaatata ctataatgac aaaagaaaat
     1441 gtaagtacag ttgtaaagaa agcccgagat gcctacaaag aatggaggaa agactttgac
     1501 aaacggattg attctctcta tcatgttgct aacgaattaa gaaagaacaa agaaaatctt
     1561 tctagaacag ctacaaatga aatgggtaaa gcaattaaag aagcaagagc cgagattgat
     1621 aaatgtgtat gggctattga atattttgca gataatggaa agaactttat ccacgaggaa
     1681 tcttttaata ctgatgcaag aaagagtatt ataaaattcg aagcattagg cgttatagca
     1741 agcataatgc catggaattt tccctattgg caggcattac gctttgcagc tccctcattg
     1801 gttgcaggaa atactattgt actaaaacca gccagcgcga ccatgcaatg cggattggaa
     1861 attgaaaaaa cctttgataa agctggatta gctgaaggaa tctttaagac agtaatagga
     1921 gattctagtg ttgcagaaat acttgtagat tcagacgtaa atgctgttac atttactgga
     1981 agtgttcctg taggagccaa agttgcacag agagcaacct cccaactaaa gaagactgta
     2041 cttgagctag gaggtagtga tccttttatt gtatgtgcag atgcagatat agaaaaagcg
     2101 tcaacaggag cagtaaaagg acgttttatt aattgtggtc aaagttgtat agcaagtaaa
     2161 agatttattg tagtaaaaaa tattgcaaat gaatttattg aaaagtttat tcaaaaaaca
     2221 gagaaactta aagttggcga tccttcttct gacgatactg atatagggcc gcttgtaaat
     2281 gcaaaggcat taaaaactat agattcacaa gttaacgact ctattaaaga aggagcggaa
     2341 gt
//
LOCUS       DATCMF010000276         1740 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_64245, whole genome shotgun sequence.
ACCESSION   DATCMF010000276 DATCMF010000000
VERSION     DATCMF010000276.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1740)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1740)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1740
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_64245"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..255
                     /locus_tag="VIL14_03475"
     CDS             <1..255
                     /locus_tag="VIL14_03475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEY8522799.1"
                     /translation="FQLKENHRIVRDVRGLGLMLALELRFDIKDILFDGIKEGLLMLY
                     SGRNIIRLLPPLVLDEVKVAKTLSIMDKLLTKEEERRDVK"
     gene            245..676
                     /locus_tag="VIL14_03480"
     CDS             245..676
                     /locus_tag="VIL14_03480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HEY8522800.1"
                     /translation="MLNNIDSFDEKIIKILQNDARKPFVEIANTIGLSESAVRRRIKN
                     LTDNNVIKKFTIEINNRGKTSAITLISVASSSDTSTVTSKLLNLEGVDVVYEITGQYD
                     IAAIISAPEISEINSYIDEVRKIEGVSDTNTVIILKTLKNT"
     gene            770..>1740
                     /locus_tag="VIL14_03485"
     CDS             770..>1740
                     /locus_tag="VIL14_03485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HEY8522801.1"
                     /translation="MILKSDDPNYYAHQYNNVGHEKKKIKILDSTLREGEQHPGVSFT
                     IKQRIQIAWMLDSFGVDQIEISPVVSSDHLEATKTIIKQGLKADIVAHVRAIKSDVDI
                     ALKTNSTWIATYMGISDIHLSAKLKISKEEAKSRAIEVVEYIKSHGLKCRFTMEDASR
                     TEPSFLLEMCNEMNRLGVERISIPDTVGIMRPNGMYNLVKMVYDKIDKSKSSLDVHCH
                     NDVGLALANALSGCEAGADQIHTTIDGFGERTGIPSLAETSIALTLIYGSDNNLRLHM
                     LKDLSRTISQYTRLEIPESKPIVGDSAYKHKAGTHLAAILRNPSAYE"
BASE COUNT          644 a          249 c          320 g          527 t
ORIGIN      
        1 ttccaactta aagagaatca tagaattgta agagatgtac gaggattagg tttaatgtta
       61 gctcttgaat tacgttttga tattaaggat atattatttg atggaattaa agaaggtctc
      121 cttatgttat actcaggcag aaatataatt cgattattgc caccattagt acttgatgag
      181 gttaaggtag caaaaacctt aagcattatg gataaattat taactaaaga agaggagaga
      241 agagatgtta aataatattg attcattcga tgaaaaaata ataaagattc ttcaaaatga
      301 tgctagaaaa ccatttgtag aaatagctaa tactattggc ttatctgaat cagcagtaag
      361 gagaaggatt aaaaatttaa ctgataataa cgttattaaa aagttcacaa ttgaaatcaa
      421 taatagggga aaaactagcg caataactct tatttccgtt gcctcaagct ctgacacctc
      481 aacagtaact tctaaactat taaatttaga aggagttgat gtagtttatg aaataaccgg
      541 acaatatgat attgcagcaa ttatcagtgc tcctgaaatt tctgaaatca attcttatat
      601 cgatgaagtc agaaaaattg aaggggtttc agatacaaat accgtgatta ttcttaaaac
      661 tttaaaaaat acatgatatt caagtactgc cgtaaatatc agaattttac tttcattttt
      721 tagcgttaac atttatatca catacgaaac gtgtactaat atcgttaaaa tgatacttaa
      781 atcagatgat cctaactatt atgcgcatca atacaataat gtaggtcatg aaaaaaaaaa
      841 aataaaaatt cttgattcta cattaagaga aggagaacaa catccaggag tttcttttac
      901 tatcaaacaa aggattcaaa ttgcatggat gttggattca tttggagtag atcaaataga
      961 aattagtcct gttgtgtctt ccgatcactt ggaagcgaca aaaacaatta tcaaacaagg
     1021 attaaaagca gatattgttg ctcatgttag agcgataaaa tcagatgttg atattgctct
     1081 caaaactaat tcaacttgga tagctaccta tatgggaata tctgatattc atcttagtgc
     1141 aaagctaaaa atttctaaag aagaggcaaa aagtagagcc attgaagtag ttgaatacat
     1201 caaatcacat ggtttaaaat gtcgcttcac gatggaggat gctagtagga ctgaaccttc
     1261 ttttctctta gagatgtgta atgaaatgaa tagattagga gtagaaagaa ttagcattcc
     1321 agataccgtg ggtataatgc gtccaaatgg gatgtataat ttagtcaaaa tggtgtatga
     1381 taaaatagat aaatcaaaaa gctcgctaga tgtacattgt cataatgatg ttggattagc
     1441 attagctaac gcactgtctg gttgtgaagc tggtgccgat cagattcaca ctacgatcga
     1501 tggttttgga gaaaggacag gcattccttc gcttgccgaa acttccattg cattgacact
     1561 catatatggt tcagataaca atttaagact acatatgtta aaggacttgt caaggactat
     1621 ctcacagtat acaaggttgg agattccaga atctaaacct atagtaggag acagtgcgta
     1681 taaacataaa gctgggactc atcttgcagc gattttgagg aatccttccg catatgaaat
//
LOCUS       DATCMF010000277         1659 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_64271, whole genome shotgun sequence.
ACCESSION   DATCMF010000277 DATCMF010000000
VERSION     DATCMF010000277.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1659)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1659)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1659
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_64271"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..778
                     /locus_tag="VIL14_03490"
     CDS             <1..778
                     /locus_tag="VIL14_03490"
                     /inference="COORDINATES: protein motif:HMM:NF013213.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HEY8522802.1"
                     /translation="FHMKYFDAHIHLTDDHFSSYIDYILPSLRSLKIRACSVTVDVTT
                     SKNSLILFNNQNDIITQFIGIHPEFALKDNIEEFKKLFISNLKYIDGIGEIGLDPTYV
                     TQDDIQYSNQKKIFQLLLELAEKYNKPVSIHSRKSIDEILKILPSYKIKNSLLHWFNG
                     NKKHLQQAMDMSIFVSYGPVLLYSSDKKVLLSRTHIDKLLVETDGPVMYSNCFNYLPS
                     SSISHLLSVIKCVGDTLNLDFEDVSNLLKTNSENFLAKDI"
     gene            complement(949..>1659)
                     /locus_tag="VIL14_03495"
     CDS             complement(949..>1659)
                     /locus_tag="VIL14_03495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522803.1"
                     /translation="ISGSGHDVKKNSDSSWSPISNDKVRLLVYTSDSKGKFDDENMPT
                     YNLKELAARGHWYKANDWKNIEMGGYFKLNNADDLRSGYSFYSRSIDHSNTAAGCVGA
                     TPRFNIGFDGEIKAKKEMWHLNLLDSPGVNDEDLSPSIVGKWLGIKVIIYNLPEDKGV
                     KQEFWIDKTNEGKWEKVYEFIDKGGFGEKGNNGPEKCGGSWDQLYTWGSPKSVFSWDQ
                     SDVSFKFLSVREILPPTP"
BASE COUNT          565 a          290 c          213 g          591 t
ORIGIN      
        1 ttttcatatg aaatatttcg atgcacatat acatttaacc gatgatcact tttcaagtta
       61 tatagattac attcttcctt cgttaagatc tttaaaaatc agagcctgtt ctgtaactgt
      121 agatgttaca acttccaaga atagtttaat cttgtttaat aatcaaaatg atataataac
      181 tcaattcatt ggtattcacc ctgaatttgc actaaaagat aatatagaag aattcaaaaa
      241 attatttatt tctaatttaa aatacataga tggaattgga gaaattggat tggatccaac
      301 atatgttacc caagatgata tacaatattc taaccaaaag aaaatattcc aattattact
      361 ggaacttgct gaaaaatata ataaacctgt ttcaattcat tccagaaagt ccatagatga
      421 aatattaaag atattaccat catataaaat caaaaattct ttattacatt ggttcaatgg
      481 aaataaaaag catctacaac aagctatgga tatgagtatt tttgtatctt atggaccggt
      541 tctattatat tcttcagata agaaagtcct cttgagtagg actcatatag ataaattatt
      601 agtagagaca gatggccccg taatgtattc aaactgtttt aattacttac cttcatcatc
      661 aatatcgcat cttttaagtg taattaaatg cgtaggtgat acgctaaatc tggattttga
      721 agatgtatca aatttattga aaaccaattc agaaaatttt ttagcaaagg atatttgaaa
      781 aatgaggaaa tctcctacaa ttaacaatac tatttatcac cgccatgctt ctaaaattat
      841 atttagatat aaataaaaat taaattttaa ttaatactat tttgataagc atatttaatt
      901 atagaatgtg ggtatgtaag aaccacttta accaatccgg aaattaagtc atggcgttgg
      961 aggtaaaatc tctcttacag ataagaattt gaatgataca tcagattgat cccatgaaaa
     1021 aacactcttt ggacttcccc atgtataaag ttgatcccaa ctaccaccac atttttctgg
     1081 tccattgtta cctttttctc caaatccacc tttatctatg aattcatata ccttttccca
     1141 ttttccttca ttagttttat caatccaaaa ttcttgtttt actcccttgt cctctgggag
     1201 gttatagatg attactttta ttccaagcca tttaccaaca atagatggag ataaatcttc
     1261 atcgtttacc ccaggtgaat ccaacaagtt aagatgccac atctcttttt tggcttttat
     1321 ttctccatcg aatccaatgt taaacctggg tgttgctcct acacatcctg cggctgtgtt
     1381 actatgatct atagaccttg aatagaaact atatcctgat cttagatcat cagcattatt
     1441 gagtttaaaa taaccgccca tttctatatt tttccaatca tttgctttat accaatgacc
     1501 tctcgcagct aattccttca aattgtatgt tggcatattt tcatcatcaa atttaccttt
     1561 agaatcactg gtatatacta agagtctgac tttatcattt gatataggag accaacttga
     1621 gtcagaattt tttttaacat catgtccact tccactgat
//
LOCUS       DATCMF010000278         2488 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_434046, whole genome shotgun sequence.
ACCESSION   DATCMF010000278 DATCMF010000000
VERSION     DATCMF010000278.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2488)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2488)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2488
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_434046"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..225)
                     /locus_tag="VIL14_03500"
     CDS             complement(<1..225)
                     /locus_tag="VIL14_03500"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEY8522804.1"
                     /translation="MSLTNQTQRTVLVTGSTKGIGKETTLLLLKKGLNVIISSRSQDS
                     VDNVIEEILNKFPSKKEHILGLKCDVSKHSE"
     gene            815..961
                     /locus_tag="VIL14_03505"
     CDS             815..961
                     /locus_tag="VIL14_03505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522805.1"
                     /translation="MNRTRLRPECIITLKGILDKDKFYIPQNLDNRFDVNVVYVRITD
                     KESK"
     gene            1437..1952
                     /locus_tag="VIL14_03510"
     CDS             1437..1952
                     /locus_tag="VIL14_03510"
                     /inference="COORDINATES: protein motif:HMM:NF024864.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupredoxin domain-containing protein"
                     /protein_id="HEY8522806.1"
                     /translation="MKKKLINKRKKKKNIQNKIIVIGISITVISLIVYGGINSLKSSN
                     GNFLLSPPRNFFMKATYLPTEGYAYTGQSTGTAKILNSGAGSNRFGHGPTITLNQGNT
                     LSLHLINEDSEKHSKHNLNIDEFDVHTKDLGYFQSQTVTFTANKTGTFNYYCSIHPEM
                     TGKIIVKDHAK"
     gene            1972..2379
                     /locus_tag="VIL14_03515"
     CDS             1972..2379
                     /locus_tag="VIL14_03515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522807.1"
                     /translation="MNINNTIMNERNNILNIIDSFIEQITKIRRFFIGVSISSIILAP
                     IAISLALYLFTHQSFFRIVEAEREFGFGLVVLLTAVIIISSILFVTGILQYRQIGLWH
                     KKYESYKKEKDDVEQYISNKFKNYIDEEDANKG"
BASE COUNT          928 a          326 c          338 g          896 t
ORIGIN      
        1 ctccgaatgt ttgctaacat cacattttaa gcctaaaata tgttcttttt tcgaaggaaa
       61 tttgttaaga atctcttcta tgacattatc tacgctatct tgacttctgg aagatataat
      121 tacatttaat ccctttttca ataaaagtaa tgtagtttct ttacctattc ctttagtact
      181 tccagtaaca agaacagttc tttgggtttg gttagttaaa ctcataatca gttcagactt
      241 gtgttaatta acaaaatcat ttttaaaatt agtcatttca aatatgcatt aacgtctttt
      301 tttcttacaa gatgacgaga caaacaaata acaaattcat aaaaataagt aaactataca
      361 aaagaaattt tatacaataa ctattattgt ttagtttatt aaattgggat gggaaaggca
      421 gaaatgataa tttgataatg caccagaaga gaagatgtta ataaactact gatacaacta
      481 ctactaccat tatcatttta attatgcttc ctggatagat ttttttccca tcccaaaatc
      541 actgaataac tatattgatg gtagaggatg ctattattat tctcctataa tactggatga
      601 acacaaaggc attgaatggc gttagatcct attcaaaaaa ttgacagtat tatagagaat
      661 caattagtta ttcagtgata aataaaatat gtacatttct cacaattaaa tttttggtat
      721 gtatctaaag taaattatta ttttttagca atagtataat ttatacaata tataactcag
      781 aagacgttat taaaaaagaa gccagaaggt ttaggtgaac agaactcggt taaggcctga
      841 atgtatcata actctcaaag gcatattaga taaagacaaa ttctatattc cacagaattt
      901 agataatcgt tttgatgtca atgttgtcta cgttagaata actgataaag aatctaaatg
      961 attcaatgat tcaaagaaca tgagacaaat ttaatataat tttttttcat ttaattgttg
     1021 ataatccatt tcttttaagc taatttcgtt tctgaatgtc agaggaaaca aagttgttga
     1081 actttggttt tatttctttc ctatggcctt cagctacctc ataattcaat ttaccttcca
     1141 cttgttacat tattaattat atgagattga tttccatgag tttttccatt gcaatttcct
     1201 atgagttatg aaagatattc atttgcttta ttgtttctgc aggtgaatcc tagaacatct
     1261 caaaggaatt ccatctttga ttttgaaatg aatatgttcc atatcttttt tataataaat
     1321 atagttcata tcctacataa ttaaacatgt gaatatacgg taggtctatt aataacttga
     1381 gtatatgaac ttagttaact cctctttaaa tacaaaaaat ttttatagtt ttttatatga
     1441 aaaaaaaact aattaataaa agaaaaaaga agaaaaatat tcaaaataaa attatagtaa
     1501 ttggaatctc aattactgtt attagtttaa ttgtttatgg tggtatcaat tctttaaagt
     1561 cttcaaatgg aaactttctt ttatctcctc ctagaaattt ttttatgaaa gcaacatatt
     1621 tgccaactga aggatatgca tatactggtc aatcaacagg aactgccaag atattaaata
     1681 gtggagcagg tagcaataga tttggacatg gcccaacaat tacacttaat caaggcaata
     1741 cattatcact tcatcttatt aatgaagatt cagaaaaaca ttctaaacat aatttaaata
     1801 tagatgaatt tgatgttcat acaaaagatt taggatattt tcaaagccaa acagttacat
     1861 ttacagcaaa taagaccgga acttttaatt attattgtag tattcatccg gagatgactg
     1921 gtaaaataat agtcaaggat catgctaaat aaagaggcag gcatataaag attgaatata
     1981 aataatacaa ttatgaatga aagaaataac atactcaata ttatagatag ttttattgaa
     2041 cagataacca aaattagaag attctttata ggagtttcaa tttcatcaat tattcttgcg
     2101 cccattgcta tttcattagc actatatctt tttactcatc aatccttctt tagaattgta
     2161 gaagcagaaa gggaatttgg atttggatta gttgtcttat tgacagctgt aataataata
     2221 tcttctattc tttttgttac tgggattctt cagtatagac aaataggttt atggcataaa
     2281 aaatatgagt cttataaaaa agaaaaagat gatgttgaac aatatatttc taataaattt
     2341 aaaaattaca ttgatgaaga ggatgctaac aaaggataat aaaataaaat aataatttga
     2401 tattatacct atattaaaga aatctatttt cgtggaaaga atttctcata gggttctaaa
     2461 attttcttat aaaattctat tccttgag
//
LOCUS       DATCMF010000279         1511 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_301734, whole genome shotgun sequence.
ACCESSION   DATCMF010000279 DATCMF010000000
VERSION     DATCMF010000279.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1511)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1511)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1511
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_301734"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..762
                     /locus_tag="VIL14_03520"
     CDS             <1..762
                     /locus_tag="VIL14_03520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522808.1"
                     /translation="PIGPPDDKPIGPPDDKPIGPPDDKPIGPPDDKPIGPPDDKPIGP
                     PAKYTNDIKHKINNEISAITKIINKYRVGHINKKIIYSVIGIIAVAVIIMIFSQESDF
                     KISPLKFNQGAVTEAKALEISLKNVSVTNIDNNNIKINTIFDVYNPNEGTLILEDINY
                     NVNLDKIRIASGDIGQRPEGFVDSQAGIYPIIGNGTVTLKDEKTIQKDNRINNVWNKI
                     VDKSSNFQVNGTFAYKQTSSFQGHGGEINFNLVYP"
     gene            839..957
                     /locus_tag="VIL14_03525"
     tRNA            join(839..877,898..957)
                     /locus_tag="VIL14_03525"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:874..876,aa:Gly,seq:tcc)
     gene            1038..>1511
                     /locus_tag="VIL14_03530"
     CDS             1038..>1511
                     /locus_tag="VIL14_03530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522809.1"
                     /translation="MSTSSCSVKLSTIVDNKIGIVPNKENSAIIYEFYNYMQEKGSSE
                     NHQVNNLKVVINFANFLGPDITFYNISKREQITAFLNTKIKSYDIDPDKRWITTWNHF
                     LNRVKLFMRWLYNYHKNKMINNEDDDNNDDWVTLDFCKIKPKKTKRISPYLESEIW"
BASE COUNT          593 a          232 c          245 g          441 t
ORIGIN      
        1 cccatcggtc cacccgatga caagccaatc ggtccacccg atgacaagcc aatcggtcca
       61 cccgatgaca agccaatcgg tccacccgat gacaagccaa tcggtccacc cgatgacaag
      121 ccaatcggtc caccagcaaa atatactaac gatatcaagc ataaaattaa caacgaaata
      181 tcagcaatta caaaaataat taataagtat agagtaggtc atataaataa aaaaattata
      241 tattctgtta ttgggattat tgcagtagca gttataataa tgatattttc tcaagagtct
      301 gattttaaaa ttagtcctct aaaatttaac caaggagctg tgacagaagc aaaagcttta
      361 gaaatttcgc ttaaaaatgt ttcagttaca aatattgata ataataatat taaaattaat
      421 acaatattcg atgtttacaa tccaaacgaa ggaactttaa ttcttgaaga tattaattat
      481 aatgtcaatt tagacaagat acgcattgcc tctggagata ttggacaacg accagaagga
      541 ttcgtggatt cacaggctgg tatttacccg ataattggca atggaactgt aacattaaaa
      601 gatgaaaaaa caatacaaaa agataataga ataaacaacg tatggaataa aattgttgac
      661 aaatcctcta attttcaagt taacggaact tttgcatata aacaaacatc tagttttcaa
      721 ggtcacggag gagaaattaa ttttaatctg gtatatccat aaattttgat atgaaataac
      781 tcaatcattt atttgatggg aagatttaat atctattgat tttctaagat aatgaattgc
      841 ggtcatcgtc tagtttggtt aggacactgg ccttccatgc atataccatg cgaagttagc
      901 ccgcaacccg ggactttatt caaaagtaaa gcgggaattc aaatcccggt gaccgcaata
      961 tatataggaa ttcatatact agcttttgct attttatagt tgtaataaag acagaaaagg
     1021 agagaaaaaa gtaaaagatg tcaacatcat catgttcagt caagctttca actatagttg
     1081 ataataagat aggtattgtt cctaacaaag aaaattctgc tataatatat gagttctata
     1141 attatatgca agagaaaggc tcttcagaga accatcaagt aaacaaccta aaagtagtta
     1201 tcaattttgc taattttctt ggaccagata ttacatttta taatataagt aaaagagaac
     1261 agataacagc atttctaaat accaaaataa aaagttatga tattgaccct gataaaagat
     1321 ggattactac ttggaatcat tttctcaaca gggttaaatt gtttatgaga tggttatata
     1381 actatcataa aaataaaatg ataaataatg aggatgatga taacaatgac gattgggtta
     1441 cactagattt ttgtaaaata aaacccaaga aaactaaaag aattagtcct tatttagaaa
     1501 gtgagatttg g
//
LOCUS       DATCMF010000280         2514 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_193042, whole genome shotgun sequence.
ACCESSION   DATCMF010000280 DATCMF010000000
VERSION     DATCMF010000280.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2514)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2514)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2514
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_193042"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            122..319
                     /locus_tag="VIL14_03535"
     CDS             122..319
                     /locus_tag="VIL14_03535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522810.1"
                     /translation="MPMLMLKCKTCGEVFPGIYIVEESTNDEEFKSSITKNNMIHSCS
                     RGHQNEYSIEDYMDWSKIEII"
     gene            306..1436
                     /gene="hflX"
                     /locus_tag="VIL14_03540"
     CDS             306..1436
                     /gene="hflX"
                     /locus_tag="VIL14_03540"
                     /inference="COORDINATES: protein motif:HMM:TIGR03156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HEY8522811.1"
                     /translation="MKLSKVILVTYPDDFIINEGKQLILSIPEYEIAKVFTQKYLNHS
                     KYGMGSGKAEEIGKFVKETNEIEEIIVDEHLSSKQIYNLEKLIGIPVKDRERLILDIF
                     YTRATTVEAKLQIQLAEIEYEMPRVRENAKLLSNSNERAGKGGMGEYIVDVQFRDLKR
                     QMSFIKEKINDAKIKRNIYQHQRQKTGIPVVSLVGYTSSGKTTLFNLLTNEYKETSSN
                     LFTTLSTTTRSFKVPHNNKNKGGQGGILIVDTVGFISRLPTYMIDAFKSTLEESLGAD
                     LILLLIDSSEKIEDIRIKYSNCMDILEELNVNKSKLFTVLTKVDKIDTRMINEIVDKL
                     EINSDVIAISSKTGYGIHKLKTLLMRKQFLENKYNENTNVKI"
     gene            1761..2381
                     /locus_tag="VIL14_03545"
     CDS             1761..2381
                     /locus_tag="VIL14_03545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase"
                     /protein_id="HEY8522812.1"
                     /translation="MESYNIDAIQYLCKVDSNLEKIIKIVGKYSINIRNDPFQSLVES
                     IIYQQLAGKAANAIYNRFINYYNNKQITPARILNSPNDNLKKVGLSNRKIDYLKNLAS
                     HVYDGRINLEELPKMNDEEIINKLVNVKGIGRWTSEMFLIFSLGRQDILPVTDLGVRK
                     AIQKVYSLSELPKPNTMMEIAKPWRPYRSIATWYLWKSLSNFNTIG"
BASE COUNT         1032 a          292 c          371 g          819 t
ORIGIN      
        1 cttgaataat aataataata attaaccaac atagaaaata aaaaaattat ttttaatgtt
       61 aataatgaat aagctagtat aataacaact tcatcttata taaaataggt ataataatat
      121 aatgccaatg ctgatgttaa aatgtaaaac ctgcggtgaa gttttcccag gaatctatat
      181 tgttgaagaa agtactaatg atgaggaatt taaatcgtcg attactaaaa ataacatgat
      241 acatagttgt tcgagaggac accaaaatga atatagtata gaagattata tggattggtc
      301 taagattgaa attatctaaa gtaatattag taacgtaccc tgatgatttt atcataaatg
      361 agggtaaaca gcttatactg tctattccag aatatgaaat tgccaaagtt tttacccaaa
      421 aatatcttaa tcattctaaa tatggaatgg gttcaggcaa agcagaagaa ataggaaaat
      481 ttgtaaaaga aactaatgaa atagaagaaa taattgttga tgaacatttg agctcaaaac
      541 agatctataa ccttgagaaa ttgataggaa tacctgttaa agatcgtgaa agattaattt
      601 tagatatctt ttatacaaga gctactacag ttgaagcaaa attacagatc caattagctg
      661 agattgaata tgagatgccg cgggtacgtg aaaatgcaaa gttgttaagt aatagtaatg
      721 aaagagcagg aaaaggaggt atgggagaat atatagtaga tgtacagttt cgtgatctca
      781 aacgacaaat gtcgtttatt aaagaaaaga taaatgatgc taaaataaaa cgcaatatct
      841 atcaacacca aagacagaaa acagggatac ctgttgtttc tttagtaggc tatactagtt
      901 caggaaaaac aactctgttt aatcttctta caaatgaata taaagagaca tcatcaaatt
      961 tattcactac tctttcgact actacaagat catttaaagt tcctcataat aataaaaata
     1021 agggaggaca aggaggaata ttaattgtag atacagtagg ttttatcagt agactcccaa
     1081 cttatatgat tgatgcattt aaatcgactt tagaagaatc gcttggtgct gatctgatac
     1141 tacttttaat agattcatca gagaaaatcg aagatattag aataaaatat tcaaattgta
     1201 tggacatttt agaagaatta aatgttaata aatccaaatt atttacagta ttaactaaag
     1261 tcgataaaat tgatacaaga atgattaatg aaattgtaga taaattagaa ataaatagtg
     1321 atgtaatagc tatatcatcc aaaacgggat atggcattca taagcttaaa acattattga
     1381 tgagaaagca atttctagaa aataaatata atgagaatac aaatgttaag atatagtatt
     1441 tgaaatgtta ctaaaaatta gtaataatcc catggatata aaatatcttt atttttatat
     1501 aaactagaaa agttattcta tacattaaat atatttaata actgtcatct taaattaatg
     1561 ttattttcaa aatgtcttat attataattc ttttatgcaa tttcaatagt catttagcct
     1621 aaccaaatat atcatcaaaa aaaaattttt ctaatagtca ataatgatta tactgaaata
     1681 gagatatccc attcattaaa taaattgctt tactacgaat ctttcattaa tgggaatagt
     1741 attaaaccta ttgtaatgcc atggaatcat ataatattga tgctatacaa tacctttgta
     1801 aagtagatag caatctagaa aaaataatca aaatagttgg taaatattct ataaacattc
     1861 gaaacgaccc ttttcaatct cttgtagaat caattattta tcaacaacta gcaggaaaag
     1921 ctgcaaatgc gatttataat aggtttatta attactacaa taataagcaa ataacacccg
     1981 ctagaatttt aaattcgcct aatgataatt taaaaaaagt tggtttatct aatagaaaaa
     2041 tagattactt aaagaatctg gcatcacatg tctatgatgg tcgaataaat ctagaagaat
     2101 taccaaagat gaatgacgaa gaaattatca ataaattggt aaatgtaaaa ggaattggta
     2161 ggtggacctc agaaatgttt ttgatatttt ctcttggaag acaagatata ttacctgtta
     2221 cagatttagg agtaagaaaa gctatacaga aggtatattc tttatcagaa cttccaaaac
     2281 caaatacaat gatggaaata gctaaaccat ggagacctta tagaagtatt gccacatggt
     2341 atctgtggaa atctttatct aattttaata ctattggtta agaagttaat cagtttttca
     2401 tattttattt gactaaatag ttagtatgat attattaata aaaatataca gtattcatat
     2461 tttatgtcta ataattaata actaagtttt tcttttttgt taattaatta tttg
//
LOCUS       DATCMF010000281         2474 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_567035, whole genome shotgun sequence.
ACCESSION   DATCMF010000281 DATCMF010000000
VERSION     DATCMF010000281.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2474)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2474)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2474
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_567035"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1636
                     /locus_tag="VIL14_03550"
     CDS             <1..1636
                     /locus_tag="VIL14_03550"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HEY8522813.1"
                     /translation="ENFQIYIIDDIFHSWPQAITNNSKVRNEWGSECFSPNGKYIVYG
                     SNESNPSDMLVYVRNMESTAEDKFCITEREGWYTPGYWSPNNRMLNCTQLVTLTDYTI
                     WILDVESRKMEKIALCNVDKSRFITGPWLPDGKGFYIISDLNREFAGLAFYDIDKSKF
                     EWIHTPQRDIELIDISPDGKNLLWTENVDGYSNLFIKNIQNGEVREVTDLSRKGVIED
                     LKLSNDGKKIGLMIDTPTSPTNIYVIDFDNYEKAKSNAITHSLLGNISADVLIEPKLI
                     KYKSLDGLEISAFLYMPEKNNNNNKENKRTNNSPTSKFGAILSIHGGPTAQVRPYYDY
                     SGLYQYLSHNGLVIIAPNFRGSTGYGKSFEKKIYHDWGGNELKDLEYAIKWLLTQDWI
                     DPNKIGVFGGSFGGFATLNCITRLPQYNWKVAVDIVGPSNLITFAKSVPEHWKRFMAE
                     LVGNTETEVDFLKERSPITYISNVNPNVKLLVIQGANDPRVAKEESDQIVGKLKENGI
                     SVEYMVFEDEGHGFTKYSNSLKALKASAEFLVKELS"
     gene            2112..>2474
                     /locus_tag="VIL14_03555"
     CDS             2112..>2474
                     /locus_tag="VIL14_03555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522814.1"
                     /translation="MTISSYIIDNITIRPVNLISEAVSIRDEMKKMSEEYLWIYANEI
                     EDIFPLQGIFGLHPLTVEAVLHHNQPSKIEEYSRYIFAIIDGIADNQEKKMDDSNNNN
                     KNNEKILSMMVLEDDLYMY"
BASE COUNT          885 a          325 c          424 g          840 t
ORIGIN      
        1 agagaacttt caaatttata tcatagatga cattttccat tcttggcctc aagctataac
       61 taataattct aaggtgagaa atgaatgggg ttcggaatgt tttagtccca atggcaaata
      121 tatcgtttat ggatcaaacg aatctaatcc ttctgatatg ttggtatatg taagaaatat
      181 ggaaagtaca gctgaagaca aattttgtat tactgaaaga gaaggctggt atactcctgg
      241 ttactggtcg ccaaataata gaatgttaaa ttgtactcaa cttgttactc ttactgatta
      301 tactatatgg attctagatg tagaaagcag gaaaatggaa aaaattgcat tatgtaatgt
      361 agataaaagc agatttatta ctgggccatg gcttcctgat ggaaaaggtt tttacattat
      421 atccgacttg aatagagaat ttgctggttt agccttttat gatatagata aatcaaagtt
      481 tgaatggata catacccctc agcgagatat tgaattaatt gatatcagtc ctgatggtaa
      541 aaatttattg tggacagaaa atgtagatgg atatagtaat ttatttatca aaaacataca
      601 gaatggagaa gttagagaag ttactgattt atcaaggaaa ggggttatag aagatctaaa
      661 actatcaaat gatggaaaga aaatcggcct aatgatagat actccaactt caccaacaaa
      721 tatttatgta atagattttg ataattatga aaaagctaaa tctaatgcaa ttacacattc
      781 actgttaggt aatatttctg ctgatgtatt gatagaaccg aaattaataa aatacaagag
      841 tttagacgga ctcgagattt ctgcattttt atatatgcca gaaaaaaata ataataataa
      901 taaggaaaat aaaaggacaa ataattctcc cacttcaaaa tttggggcca tattatccat
      961 tcatggcggt cctaccgctc aagtaagacc ttattatgat tactctggac tttatcaata
     1021 tctttcccat aatggccttg taattatagc accaaatttt agaggaagta ccggctatgg
     1081 caaaagtttt gagaaaaaaa tttaccatga ttggggcgga aacgaattga aagatttaga
     1141 atatgcgata aaatggcttt taacacaaga ttggattgac cctaataaaa ttggagtatt
     1201 tggtggtagt tttggaggat ttgctacatt aaattgtata actagattac ctcaatacaa
     1261 ttggaaggta gctgtagata tagtaggtcc cagtaacctt ataacatttg ctaaatctgt
     1321 tccagaacat tggaagcgtt ttatggcaga attagtaggt aatactgaaa ctgaagtaga
     1381 tttccttaaa gaaaggtctc caattacgta tattagcaat gtcaatccaa atgttaagct
     1441 tcttgtaata caaggtgcta atgatccacg agtagcaaag gaagagtctg atcagattgt
     1501 tggaaaatta aaagaaaatg gtattagtgt tgaatatatg gtttttgaag atgaaggaca
     1561 tggctttaca aaatatagta attcattgaa agccctcaag gcctctgcag agttcttagt
     1621 aaaagagtta tcataactat atttttattt atagggattg ccaactttgt tctttttatt
     1681 taattaattt tattattcag ttatatattt tgaatttctc cttttacttt atttgctagc
     1741 aaatcctcat taacaaaaaa gtaaatttta acgaaaattc tcccaatgca gcaatggact
     1801 gggcgggatt tgaacgctcg gttcgacaga cgattgattc tgtcaattat tagaaactta
     1861 tttttaatat taaaaattgt tgtctcttgt taattgaatt tattattatt ttctatatca
     1921 aaattaaatt tttttgatat caaatgaaaa acctttcttg gtacaaacct ttggatatat
     1981 tttttattat cccatcccaa cctttttaat cctaatccta tttgttataa cgtctctgat
     2041 tgcaaggttt ttaatatttc caataaagag tagtttagtt tattatcgat gttcttggat
     2101 aatctcatta gttgactata tcatcataca ttatagataa tataacaata agaccagtaa
     2161 atctcatctc tgaagcagtc tccattagag atgaaatgaa aaagatgtca gaagaatatt
     2221 tgtggattta tgctaatgag attgaagata tatttccatt acaaggtatt tttgggcttc
     2281 atcccttaac agtggaagct gttttgcatc ataatcaacc atccaaaatt gaagaatatt
     2341 ctcgatatat ttttgctata attgatggaa ttgcagataa tcaggaaaag aaaatggatg
     2401 atagtaataa taataataaa aataatgaaa aaatattatc aatgatggtt ttagaagacg
     2461 atttatatat gtat
//
LOCUS       DATCMF010000282         2180 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_369133, whole genome shotgun sequence.
ACCESSION   DATCMF010000282 DATCMF010000000
VERSION     DATCMF010000282.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2180)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2180)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2180
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_369133"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(504..1124)
                     /locus_tag="VIL14_03560"
     CDS             complement(504..1124)
                     /locus_tag="VIL14_03560"
                     /inference="COORDINATES: protein motif:HMM:NF013961.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase domain-containing protein"
                     /protein_id="HEY8522815.1"
                     /translation="MDSVKQSVPDRILKSYIDHQSLIPLLYWFKNDLMKWMPKELQCS
                     SCNMQMRVKVIEGDSKILRKTEVHSCDKCGSSVIFPRYMKILKIAETKVGRCSEWSIL
                     FGAILNSLSVHTRIVYDFLDHCWNESLINKKWIHLDSTLNYPISFNHPYYYERNWGKY
                     YEYVLAFSANSIDDVTTCYTENWHKVKKRREKEDKIDVLKKFYLRL"
     gene            1407..1721
                     /locus_tag="VIL14_03565"
     CDS             1407..1721
                     /locus_tag="VIL14_03565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522816.1"
                     /translation="MIEDISTTKDIVKEEQIKTCDICNNEINTLIYLNVSSSSSSNSN
                     SSNTNKTKKSEVITNNNEDLSDKYYNICLNCVEKITELMKYNYGFNGRLIQFFESLTE
                     KK"
BASE COUNT          791 a          308 c          319 g          762 t
ORIGIN      
        1 tcccttagcg gaccttttga gttgttgtga agttatattt cctttacata agttacctaa
       61 aacttcacag gatggagttt ccgacttgta catctcagca actacgtctg ctttctctac
      121 tgatttgcct atatcaatgt gaacttcttt tattttatca atatctgtaa ctttaacaga
      181 agactttaaa ttctcattat catttcttga ttaaaagatt gctaaagcct tatctaaagt
      241 atctactata actggcactt cctctctgcc agtaagtaat gcagcaaatc tacattttcc
      301 tattccacta attttctttt ttagaggtag gaaaattcgt tatagtttaa aattatataa
      361 catctataac aataaaaaaa attttattta atttaaaact atatctaaaa ttctatttta
      421 cttttcttat tattgtacat gccaacttta ttggatttag atcgatctag aacaagaaag
      481 aatctatttc gtcaataagt gaattataat ctcaaataaa atttcttcaa tacatctatt
      541 ttatcttctt tttccctcct tttcttaacc ttgtgccagt tttcagtata acatgtagta
      601 acatcgtcga tactattggc agagaatgct aaaacatatt catagtactt gccccaattt
      661 cgctcataat aataagggtg gttaaaagaa ataggatagt tcaaagttga gtcaaggtgt
      721 atccattttt tatttatcaa agattcattc caacaatgat caagaaaatc atatactatt
      781 ctagtatgaa ctgacaatga atttagaatg gcaccaaaga gtatagacca ttcactacac
      841 ctaccgacct ttgtttcggc aatttttagt attttcatgt atcgaggaaa tattacagag
      901 gatccgcatt tgtcacatga atgcacttct gttttgcgta atatctttga atcgccttct
      961 ataactttga ctctcatctg catattacaa cttgaacatt gtaattcctt tggcatccat
     1021 ttcatcaaat catttttgaa ccaatataag agagggatta acgattggtg atcgatatat
     1081 gattttaata tccggtccgg tactgattgc ttgacagaat ccaagatgtt atggtcggta
     1141 tactgttctg ataccctttt ataaaactta aaaatgtctg cgaaggacga ggtgaatgga
     1201 ttcaaattat tagtaaacat aatattttac tcataacagt ctgtggattt gataaaatta
     1261 attgtttctt tctgtcaaag tcaaaagaga agattttatt aattcctttg gttactccct
     1321 tttaagaaat tagttctaat aactaaaata tgaattatta agattaagga aaacattatt
     1381 ggtaacaata cacacagaaa ataaatatga tagaagacat ttcaaccaca aaagatatag
     1441 taaaagaaga gcaaatcaaa acctgtgata tttgtaataa tgaaattaac acgttaatat
     1501 atctaaatgt tagtagtagt agtagtagta atagtaatag tagtaacacc aacaaaacca
     1561 aaaaatcgga agttatcact aataataacg aggatctttc tgataaatat tacaacattt
     1621 gtttaaattg tgttgagaaa attacagaat taatgaaata taattatggc tttaatggga
     1681 gactaattca attttttgaa tcattaacag aaaagaagta aacagggagt aaagaaaaaa
     1741 tatatctttt ttatattata tatatataaa atatatatag tgagaattat aaatgaaata
     1801 gcagatattc tccattaaaa attgatgaca gtttttctta ataaggatat agaatagaaa
     1861 gaatttgatt gatttgatta taaaactatc aataagatat aatttaaaaa atcaagttgc
     1921 ttatgtaaat gtataatata taatacctca aatttacaat atatccatta ttatgttttc
     1981 aattagtatg ctgctgatgg gaaatgacat gtaagggaat ttgtcaacgt cataaagcaa
     2041 taaaacctag aaatggggga cgctatttga tagggcaaaa acgctgtcag gtttgtgaga
     2101 tctatattga ttggcaaggt acctggtgtc catgttgtgg ttatagatta aggatcagac
     2161 cgagaaatgg aaaatataaa
//
LOCUS       DATCMF010000283         2166 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_567047, whole genome shotgun sequence.
ACCESSION   DATCMF010000283 DATCMF010000000
VERSION     DATCMF010000283.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2166)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2166)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2166
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_567047"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(214..1119)
                     /locus_tag="VIL14_03570"
     CDS             complement(214..1119)
                     /locus_tag="VIL14_03570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HEY8522817.1"
                     /translation="MEFVDTSIIEQIEMKMIRPSSFAVRDKFQKYCEDDESLIISIRE
                     HGLIQPILIRPLSHGFEIVAGHRRYQACKSLRWRFIPCKVCEMTNKQAFEIQLSENIQ
                     RKSMDPIEEAEAFRRYVIDFGWGGVSDLAQKIGKSEEYVSHRIQLLKLSEETKRKIAS
                     NMLNVSKAIEISTIPIEKQSEIVGEIIENNLSVKRIRELKMILRDNITEDYSNLGFAS
                     GNNYLSKSFKITKKASLSLKVTLARIDNLIEESQISIEPEQRTEIINFLMELRIRIHE
                     LIDDTIKFKNYNKKKIFRGKKNTRN"
     gene            complement(1371..>2166)
                     /locus_tag="VIL14_03575"
     CDS             complement(1371..>2166)
                     /locus_tag="VIL14_03575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HEY8522818.1"
                     /translation="YIVLRGMSYIGHGMSHAVFGGAISSYILGLNLYVGAAIWGILSA
                     LLITEINKRYKIKADAAIGVVTTAGFAIGIFLMSTAQTPVRNFEALLFGNILSVNDLD
                     LIFIAFVSIVTITFIFFFQKRLLFTILDIDTAKVYGIKTNRVDLLFSIVLAIVVIAAM
                     NSIGVTLLAVAIIAPAISARLITNNFLKLMILSAGIGIITAFLGMYCSFYVDSPSGAT
                     IVLFGTASFIIAVAYSHIKKSYHMHFHGDNKHSHPHNHIEEHRHEH"
BASE COUNT          717 a          371 c          285 g          793 t
ORIGIN      
        1 gtaactgtat gcattgttgt ttatggaatg acattgccag tacaaaaggt cctattattt
       61 taacattcat ttacctccat tgaggaatgg aacgttatca tactcgaaga caatcgatcg
      121 aataaaataa ttttttgcta caaacgtgtt tctctcttca gacagatgga ttcctagcat
      181 tgttaacagc accgtccaaa aaagaaaaac taattagttg cgggtatttt ttttacctct
      241 gaagattttt tttttattgt aatttttgaa ttttatagta tcatctatca attcatgtat
      301 tcttattctt agttccatta aaaaattgat aatttctgtt ctctgttctg gttcgattga
      361 aatttgcgat tcttctatta agttatctat tcttgccaaa gtaactttga gagacagtga
      421 tgcctttttg gtgatcttaa aggattttga taaataattg ttaccactcg caaaacctaa
      481 attactataa tcttcagtaa tattgtctct taaaatcatt tttaattctc ttattctttt
      541 tacggaaaga ttattttcaa ttatttctcc aactatctct gattgctttt caattggaat
      601 agttgatatc tcaatagctt tactaacgtt taacatattt gaagcgattt ttctctttgt
      661 ttcttctgaa agctttaaaa gctgaatccg atgagataca tattcctcac tttttccaat
      721 cttttgggca agatcactta caccgcccca accaaaatca atcacatatc ttctaaatgc
      781 ttctgcttct tctataggat ccattgattt cctttgaata ttttcagaga gctgaatttc
      841 gaatgcttgt ttattggtca tctcgcaaac tttacaagga ataaatctcc atctcagaga
      901 tttacaggct tgataccttc tatgacctgc tactatttca aatccatgag ataagggtct
      961 aattaggatg ggttgtatta acccatgctc tctaatacta ataataagag attcatcatc
     1021 ttcacaatat ttttgaaatt tgtctcttac tgcaaatgat gaaggacgaa tcatcttcat
     1081 ctctatttgt tcaattatac ttgtatcaac aaattccaca ctattgaata ctcaagtatc
     1141 tttatattta ttttgatttt attcatttta tttcattata aaatctcgat tattataaaa
     1201 attacagcta ttagattgat ttcgcattat tcattgttct taatatatct tataattttc
     1261 ttaaggccaa gaataaacat cctatgttag aacagaaact taaaagaaat ctcttatcta
     1321 tcaaaaaaaa tgtaagtttt ttaattcaat taaaacatag tcatatgtaa tcagtgttca
     1381 tgtctatgtt cttcaatatg attatgggga tgagagtgct tattatctcc atgaaaatgc
     1441 atatgatatg actttttaat atgagaataa gccacagcta taataaatga agcagttcca
     1501 aataatacta tagtagcacc agaaggtgaa tcaacataga aactgcaata catccctaaa
     1561 aatgcagtta ttatcccgat acccgcagaa aggatcatta attttaaaaa attatttgta
     1621 attagtcttg ccgatattgc aggtgcaata atagctactg caagaagtgt aactcctata
     1681 gaattcattg ccgctattac aacaatggca agtactatag aaaataacaa atctactcta
     1741 tttgtcttaa ttccgtaaac tttagctgta tcaatatcta atattgtaaa caataatctc
     1801 ttttgaaaaa agaatatgaa agtgatggtc acaatagaaa caaaggcaat gaaaataaga
     1861 tctaaatcat taacagataa tatatttcca aatagtaggg cctcaaagtt tctaacagga
     1921 gtttgagcag tgctcattaa aaaaattcca attgcaaatc ctgcagttgt cacaacacct
     1981 attgcagcat ctgcttttat tttgtatctt ttatttattt cagttattaa cagagctgat
     2041 aaaatacccc atattgctgc tcctacatac agatttaatc ctagaatata gctacttatt
     2101 gctccaccaa ataccgcatg ggacattcca tgtccaatat agctcattcc tcgtaatact
     2161 atgtaa
//
LOCUS       DATCMF010000284         1566 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_369223, whole genome shotgun sequence.
ACCESSION   DATCMF010000284 DATCMF010000000
VERSION     DATCMF010000284.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1566)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1566)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1566
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_369223"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..429)
                     /locus_tag="VIL14_03580"
     CDS             complement(<1..429)
                     /locus_tag="VIL14_03580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_process: GO:0006725 - cellular aromatic compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UbiX family flavin prenyltransferase"
                     /protein_id="HEY8522819.1"
                     /translation="MGIIIAITGGSGVIYGIKLIESLNLLKLETHLVISEWGEKTIKI
                     ETNLDINYVRKLSTNWYDNKNMAAPISSGSFKTDGMVIIPCSMKTLASIANGLDDSLI
                     SRAASVCIKENRKLVVVPRETPLSKIHLENMVKLSELGVSI"
     gene            507..1403
                     /locus_tag="VIL14_03585"
     CDS             507..1403
                     /locus_tag="VIL14_03585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PfkB family carbohydrate kinase"
                     /protein_id="HEY8522820.1"
                     /translation="MLTIFGTIALDTTKTSKKTVNRIMGGAATYASLSSSKYTSTNII
                     GIIGYDFPQRYKDILDSHVNTKGVIVKDNEKTFHYDSSFDPTLTIRTANKTELNVIEN
                     FEPFVPEEFIDSKYVFLANNDPVQNKKMQRLFSDPEFVVCDTIEYWIKNKYDQVIDMI
                     KEVNGIIIDSQEARLLTNEYNLLKCAKKIKELGPELIIIKKGENGSMLFYEDIVSVCP
                     AIPIENVIDPTGAGDCYAGGFLGYLSKKGKINARTIREAAIYGNIMGSFAIEDFGPNK
                     IINISCLDIEKRLKIYKKLLMV"
BASE COUNT          573 a          233 c          234 g          526 t
ORIGIN      
        1 tatggataca cccagttcgg acaatttaac catattttcc agatgaattt tagacaaagg
       61 agtttctctt ggaacaacaa ctaattttct attttctttt atacaaacac tggcagctcg
      121 tgagatcaaa ctatcatcta atccatttgc tatactagct agggttttca tactacacgg
      181 aataatcacc ataccatcag ttttaaaaga accactagag ataggggctg ccatattctt
      241 attatcgtac cagttagttg atagctttct tacataatta atatctaaat ttgtttcaat
      301 cttaatcgtc ttttctcccc attcgctgat aaccaaatgt gtttccaatt taagcaaatt
      361 taatgattca attaatttta taccataaat aactcctgat cctccagtaa ttgcaataat
      421 aatacccata ttttccctta cttaaataga tgataagtat ttatctaaaa attaattttt
      481 ataatccttc agtaaccaaa taaaacatgc ttactatttt tggaacaata gcgttagata
      541 caactaaaac ttctaaaaag acggtaaata gaataatggg gggagcagca acatatgcat
      601 ctttatcttc ctcaaaatat acatcaacta atattatcgg aataattggt tatgattttc
      661 ctcaacggta taaagatatt ttggatagcc atgtgaatac caaaggtgtt attgtaaaag
      721 acaatgaaaa aacttttcat tatgattcct cttttgatcc aactttgaca attcgaactg
      781 ccaataaaac tgaattaaac gttattgaaa attttgaacc ttttgttcct gaagaattta
      841 tcgattctaa atatgttttt ttagcaaata atgatccagt tcaaaacaaa aaaatgcaac
      901 gtttatttag cgatcctgaa tttgttgttt gtgatactat agagtattgg atcaagaata
      961 agtatgatca ggtgatagat atgataaaag aagtaaatgg aatcataatc gatagccaag
     1021 aagccagact tttaacaaat gaatataacc tcctaaagtg tgctaaaaaa attaaagaat
     1081 tgggccccga gttgataatt ataaaaaaag gggaaaatgg ctctatgctt ttttatgagg
     1141 atatcgtatc tgtatgtccg gctatcccta tcgaaaatgt aatagatcca actggagcag
     1201 gagattgcta tgcaggtggg tttcttggtt atttgtccaa aaaaggaaaa ataaatgcaa
     1261 gaactattag agaagctgca atatatggaa atataatggg ttcttttgca atagaagatt
     1321 ttggaccgaa taaaataatt aatatatctt gtctcgacat agagaaaaga ctaaaaatat
     1381 ataaaaaatt attgatggtc taagtagtac agcaaatcag tcatttatta tacttttatt
     1441 gttattaaca aattattaaa taatcagtca tggctaaatt tttttagctt tcattatttg
     1501 ctgtagtatg tgatttaaac tatcaagagg agatgaagaa ttcaaaatgt gtctacctaa
     1561 tataaa
//
LOCUS       DATCMF010000285         1725 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_501161, whole genome shotgun sequence.
ACCESSION   DATCMF010000285 DATCMF010000000
VERSION     DATCMF010000285.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1725)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1725)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1725
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_501161"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1563
                     /locus_tag="VIL14_03590"
     CDS             <1..1563
                     /locus_tag="VIL14_03590"
                     /inference="COORDINATES: protein motif:HMM:NF017442.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF790 family protein"
                     /protein_id="HEY8522821.1"
                     /translation="QSFSSDSKNKIFSTQILSSFSLRKVLFEESSRRGLPVDHTKRDK
                     IFQYVASKLGTKTNYLEKLMWLDQEDYLILENFNSIEPIHLLGIYNLSILQTLLFNSV
                     NFEFTIKGGTNWKQVLRTIKRFGLMYNLQKTQKNSDNKFPKKIQSNQIEQNIVNGDYF
                     KSYFNDTIICSIDGPLSIFKLTNKYGVLIAKVIPKIISASKWSIKASIIKNSLSGRKL
                     YDFDLSSDSEVHFFNSINDRFYNDYPFEDSNSINLNFDSFVETKFAMQFEKFHTGWKL
                     VREPDPLILPGGRAFIADFLFERYGKKIYFEIIGFWTVQYLERKFKKIYEISKFSDNK
                     NDLLIAINENNLVSESGEMKKLLSGSILDYNKIIIYKKDSIPMKKILFYLKSIDNKIM
                     NQNLETYRSAMTEYIIDLLNKNQEIIDLEEICKTYGVSINSLSNIISNLLTNNYIKKY
                     IIQNSLLISEKKLNEIKDAIGNIDNLIKIQQIFENNNIPIQYTIDILKYLGYEIVWKG
                     IDLSNIIIKRKT"
BASE COUNT          717 a          196 c          216 g          596 t
ORIGIN      
        1 caatcctttt cttcagattc taagaacaaa attttttcaa ctcaaatact atcttcgttt
       61 tcgttacgta aagttttatt tgaggaatct tcaaggagag gattacctgt agatcatact
      121 aaacgagata aaatttttca gtatgttgct tcaaaattag gtacaaaaac taattatttg
      181 gaaaaattga tgtggctaga tcaagaagat tatctaattc tcgaaaactt taattcaatt
      241 gaaccgatac atttactagg aatatataat ttatcaattt tacagacact attatttaat
      301 tctgttaatt ttgaattcac tataaaagga ggaacaaatt ggaaacaagt attaagaaca
      361 atcaaaagat ttgggctaat gtataacctt cagaaaactc aaaagaattc agacaacaaa
      421 tttcctaaaa aaatacaatc taatcaaatt gaacaaaata ttgtaaatgg tgattatttt
      481 aaatcatatt tcaatgacac tatcatttgc tcaatagatg gacctttgag tatatttaaa
      541 ttaactaata aatatggtgt tttaatagca aaagtaattc ctaaaattat ttcagcttct
      601 aaatggagta ttaaagcatc aataattaaa aatagtcttt caggaagaaa gctttacgat
      661 tttgatcttt cctcagatag cgaagtacat ttcttcaatt ctattaacga ccggttttat
      721 aatgattacc catttgaaga ctcgaatagt attaatctta attttgatag ttttgttgag
      781 acaaaatttg ctatgcaatt tgaaaagttt catactggct ggaaattggt aagagaacct
      841 gatcctctaa tattgccagg tggaagagca ttcatagctg attttctttt tgaaagatat
      901 ggcaagaaaa tatattttga aataatagga ttttggactg tacaatattt ggagagaaaa
      961 tttaaaaaaa tttacgaaat ctcaaaattt agcgataata aaaacgatct tttaatagca
     1021 ataaacgaaa ataatttggt ttcagaaagt ggtgaaatga aaaaactttt atcaggttct
     1081 attttagatt acaataaaat cataatatat aaaaaagatt caattcccat gaaaaagatc
     1141 cttttctatc ttaaatctat agataataaa ataatgaatc aaaatcttga aacctacaga
     1201 tctgcaatga ctgaatatat catagatctc ttaaataaga accaagaaat aattgatttg
     1261 gaagaaatat gtaaaactta tggtgtttcc attaattctc tatctaatat tatttcaaac
     1321 ctacttacaa ataattatat taaaaaatat ataatacaaa attctttatt aatttctgag
     1381 aaaaaattaa atgaaataaa agatgcaatt ggtaatattg ataatttaat aaaaatacaa
     1441 cagattttcg aaaataataa tattcccatc caatatacta tagatattct aaaatattta
     1501 ggatatgaaa ttgtctggaa gggaatagat ttatcaaata ttataataaa acgaaaaaca
     1561 tgagattata atttatattc atatattaaa attggttata aaaatacata actattgaaa
     1621 tatttaaatt atgataagat ttagttaata atagagtgtg tatatgtatg aacaatattg
     1681 aaaatattaa aattaataac aataatactt ggttacaaaa tattt
//
LOCUS       DATCMF010000286         3147 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_369279, whole genome shotgun sequence.
ACCESSION   DATCMF010000286 DATCMF010000000
VERSION     DATCMF010000286.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3147)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3147)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3147
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_369279"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(209..1096)
                     /locus_tag="VIL14_03595"
     CDS             complement(209..1096)
                     /locus_tag="VIL14_03595"
                     /EC_number="2.5.1.141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008495 - protoheme IX farnesyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0048034 - heme O biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heme o synthase"
                     /protein_id="HEY8522822.1"
                     /translation="MIREVAIVNTVKNYYELTKPKIWYLLVFTAFGSALTASLLYDIP
                     LSSLTWVLLLGGIAAGSAAADTITGYNDRDIDAIMDRTKDRPIPSGRISPKNALIFGL
                     ILTAIALIFSWLINLWAFLLMMFGLFDNIIIYSKWLKRRSQSNIILGGFSGGVPALIG
                     YVTVTSQNIEIGLVMAGLVFLWIPTHIWSLALHVRKDYQKAKVPMLPVVIEEKRAVRI
                     IAITTLIMVLFSILPFFFNQFGHIYLVTATIFGAIMLGLSLWLLLKPTEKASWTVFKF
                     SSPYLTAVFIAFIVDAFFH"
     gene            complement(1186..2262)
                     /gene="asd"
                     /locus_tag="VIL14_03600"
     CDS             complement(1186..2262)
                     /gene="asd"
                     /locus_tag="VIL14_03600"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004073 - aspartate-semialdehyde
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HEY8522823.1"
                     /translation="MLKVALIGSTGAVGQEFVIALKNHPWFELAAVASSKRSAGKRYI
                     DALRDDSTGILKWHNKEEVPNYIKDRIVNNVDEIDPKEYDLIFTAVESSDAQIIEPKI
                     AETTPVISTAAAFRYQEDVPILIPGINDDHIELLNIQQKNRNWKGYICPLPNCTTTGL
                     AITLKPILDNYGINSIFMTSMQALSGAGRSPGVAALDIIDNVIPFIPKEEEKVQVETK
                     KILGSLKNGSIASSRIKVSCTCTRVPVMDGHTETVFVETQKPLEPEQVKECMIKFSKS
                     VKINGLPSSPSEYIIVHDDPTRPQPRIDREINDGMTTFVGRLRKDTVFDNGIKYVLLS
                     HNEKMGSAKGAVLLAELLKTKNMI"
     gene            2323..>3147
                     /locus_tag="VIL14_03605"
     CDS             2323..>3147
                     /locus_tag="VIL14_03605"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEY8522824.1"
                     /translation="MINDIDIIDSEVLLNHGNINDEHPLNSLHEEKKFSSLDSCSHGG
                     IYSTKNHLQVKIDFSSNINPLGISRQVLKEIRKSIKQISHVYPDSNCNLLKKSIAEYV
                     EHGIDKEWISVGNGATEIIHNFVRAVSLSNSIIISPTFCEYELASKRCKMKINFIPLS
                     KKLQIQADKVIEKSKKINSNSLIFICNPNNPTGLVNTQMIEKILYSIDPSKIILLIDE
                     SFIEFLNDIERESLMSKIKEYKNLAILRSMTKSYGLAGLRLGYLVANPHLIQKLKPF"
BASE COUNT         1088 a          522 c          472 g         1065 t
ORIGIN      
        1 tttatattaa atagatcaag cgcttttgaa tagtcatcga attcttcaac cgaagaggag
       61 gattctactt cccatgattt tatattttct actgaggagt ccgtttcatg atctgaggac
      121 attaattata gtaatattgg gatattattt aataatttac ttgtattaat aaaatcaata
      181 ttaacagagt taatttgtcc gtgttctctt aatgaaaaaa tgcatctact ataaatgcta
      241 tgaaaactgc tgtaagataa ggacttgaaa atttaaaaac tgtccatgat gccttttctg
      301 taggttttag taaaagccat aatgaaagac ctagcattat agcaccaaat atagttgcag
      361 taactagata tatatgtcca aattgattaa agaagaaagg cagtatacta aataacacca
      421 ttatcaaagt agttatcgca attattctta ctgctctttt ctcttcaata actactggca
      481 acatgggaac tttggctttt tgataatctt ttcttacatg taaagctaag ctccagatat
      541 gtgttggtat ccataagaat acaaggccag ccataactaa accgatttct atgttctgac
      601 tagttacagt aacatatcct attaaggcag gcacaccacc tgaaaatccc ccaagaataa
      661 tatttgactg gcttcgcctt tttagccatt tactgtaaat aataatattg tcaaataaac
      721 caaacatcat taataaaaat gcccacagat taataagcca agaaaatatc aatgcaatag
      781 cagtcaaaat aagaccaaag attaatgcat tcttcggcga aattctacca gatggaatag
      841 gcctatcttt agtacgatcc attatagcgt cgatatcacg gtcattatac cctgtaatag
      901 tatcagcagc agctgaaccg gccgcaattc ctccaagaag aaggacccac gttaaagaac
      961 ttaatggtat atcatataat aaagaggcag ttagagcaga accaaatgca gtaaaaacta
     1021 gcaaatacca tatctttggt tttgttaatt cataataatt tttaaccgta tttacgatgg
     1081 cgacttcgcg gatcactgct tagatctcaa ctcattatca tctaacctaa tttaacatat
     1141 ggtttaatat taattcttca aatcgaattc tagactaata aaaagctaaa tcatattttt
     1201 agttttgagc aattcagcta aaagtactgc tcccttagca gagcccattt tttcattatg
     1261 cgaaagcaat acatacttta taccattgtc aaatactgta tcttttctta atctacctac
     1321 aaaagtagtc attccatcat tgatttctct atctattcta ggttgaggtc gggtaggatc
     1381 atcatgtact attatatatt cacttggaga agaaggtaga ccattgattt ttactgattt
     1441 agaaaacttt atcatgcatt ctttcacttg ttcaggttcc aaaggttttt gtgtttcaac
     1501 aaagacagtt tcagtatgtc catccattac aggtactctt gtacaggtac aacttacttt
     1561 tatccttgat gaagcgattg acccattttt gaggctccct aagatttttt ttgtttcgac
     1621 ttgaactttc tcttcttcct ttggaataaa aggaataaca ttatctatta tatcaagtgc
     1681 tgctacacca ggagatcgtc ctgcacctga cagggcctgc attgatgtca tgaaaataga
     1741 attaattcca taattatcta atatgggttt taatgtaatt gctaatcctg tagttgtgca
     1801 attaggtaaa ggacaaatat atcctttcca atttctattt ttctgctgga tattcaataa
     1861 ttctatatgg tcatcgttaa ttcctggaat tagtataggt acatcctctt ggtatcgaaa
     1921 tgcagctgca gtactgatta caggtgtagt ttctgcaatt tttggttcaa tgatttgagc
     1981 atcagacgat tctactgctg taaatattaa gtcatattct tttggatcta tttcatctac
     2041 attatttaca attctatctt ttatgtaatt agggacttct tccttattat gccattttaa
     2101 aataccggta ctatcatcac gaagtgcatc aatatatcgt tttccagcag atctttttga
     2161 ggaagctact gctgccagtt caaaccatgg atgatttttg agtgcaataa caaattcttg
     2221 gcctactgca cctgtagaac caataagtgc aacttttaac ataataatga ctatttaata
     2281 tactttttaa taatctttat tcaagtttaa aaaaatattt acatgataaa tgatattgat
     2341 attattgata gtgaagtttt gttaaaccat ggtaatatta acgatgaaca tcctctaaat
     2401 agtctacacg aagaaaaaaa atttagcagt cttgattctt gttcccatgg gggtatatat
     2461 tcaactaaaa atcatttaca agtaaaaatt gatttcagtt caaacataaa cccactaggt
     2521 atttcaagac aagttttaaa agaaattaga aaaagtataa aacaaatatc tcatgtttat
     2581 ccagattcca attgcaattt acttaaaaaa agtattgcag aatatgtaga acatggtatt
     2641 gataaagagt ggataagtgt aggaaatgga gcaacagaga ttattcataa ttttgtaaga
     2701 gctgtttcct taagtaattc tatcataata tcacctacat tttgtgagta cgaactggcc
     2761 tctaaaagat gtaaaatgaa aataaatttc atacccttgt caaaaaaatt acaaatacag
     2821 gccgacaaag ttatagaaaa atccaaaaaa attaattcta atagtttgat cttcatttgc
     2881 aatcctaata atcctactgg tcttgtaaac actcagatga tagaaaaaat tttatattct
     2941 attgatcctt ccaagataat tttactcata gacgagagtt ttatagaatt cttaaatgat
     3001 atagaaagag aatcgctgat gtcgaaaata aaagaatata aaaacttagc aatactgagg
     3061 tcaatgacaa agtcatatgg attagcagga ttgcgtttag gatatttggt tgctaatccg
     3121 catttaattc agaaactaaa accattt
//
LOCUS       DATCMF010000287         1509 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_65708, whole genome shotgun sequence.
ACCESSION   DATCMF010000287 DATCMF010000000
VERSION     DATCMF010000287.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1509)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1509)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1509
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_65708"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            138..641
                     /locus_tag="VIL14_03610"
     CDS             138..641
                     /locus_tag="VIL14_03610"
                     /inference="COORDINATES: protein motif:HMM:NF013224.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HEY8522825.1"
                     /translation="MPFNHNELLDDLNLKIMDMLGKDSSVSFVEVAKQIDVSDATIHN
                     RVQRLIAAGIINKFTISVDNNRLGYSHLAYMGVNIECGYVDDVTNNLCKVDEVLEVHE
                     MHGIFDLFIKIRAKDLDQLRDIVQNKICRFPHILETELMTVLKTGKEEHTTLSSLKKD
                     RSVGLNY"
     gene            complement(736..>1509)
                     /locus_tag="VIL14_03615"
     CDS             complement(736..>1509)
                     /locus_tag="VIL14_03615"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004084 - branched-chain-amino-acid
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0009081 - branched-chain amino acid
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid transaminase"
                     /protein_id="HEY8522826.1"
                     /translation="LSDHMQRLINSGKIYFMDIKYSKKQLEKAVIDTINANGVEESYV
                     RPIAYYGYGKMGVNPLPNKVSIAIATWVWDEHLKREMHYEEKGVRLMVSAWMRIDGRT
                     MPFLAKATANYANSALARVEALKAGFDEAIMLNTNGKVIEASAENIFMVKDSILITPP
                     TSSGALEGITRDTVLTIAKENKIPYEIRDISRDELYIADEVFLTGTAAGIKPVAEIDN
                     RSIADGREGSTTKQIKEKFGLVVYDRDDELSKKWLTFVE"
BASE COUNT          468 a          265 c          251 g          525 t
ORIGIN      
        1 cctaaaaaat ttctcttttt ttaattttta taattgttct ttttagcaat ccagtgtgta
       61 attatatgtc gtgtacaaac tagataaaag gacgctgcaa aataatatat aacaaaaaaa
      121 taatctgatt tagatatatg ccttttaatc acaatgaact actagatgat ttgaatctta
      181 agataatgga tatgctgggt aaggattcgt cagtatcttt tgttgaggtg gctaagcaaa
      241 tagatgtctc tgatgcaacg atacacaata gagttcagcg gttgatcgct gcaggaatta
      301 tcaacaagtt tacaatttcc gtagataata accgtcttgg ttacagtcat ctggcgtata
      361 tgggtgtaaa tattgagtgt ggttatgtag atgatgtgac taataatctt tgcaaagtgg
      421 atgaagtttt agaagtccat gaaatgcatg gtatatttga tctatttata aaaataagag
      481 ctaaagattt agaccaatta agagatatag tacaaaacaa aatctgtagg tttccccata
      541 ttcttgaaac agaattgatg acagttttaa aaactggaaa ggaagaacat actactttat
      601 catctttgaa aaaggatagg tcggtaggac taaattacta ggtcaattca tgagtaatgt
      661 agaatacata atagaatatg aaatgcctct tattgcatct tttggtttca tgatattcga
      721 atattgcaca ataacctatt caacaaatgt taaccatttt ttgctaagct cgtcgtctct
      781 atcataaact actaatccaa atttttcctt aatttgttta gtggtcgaac cttctcttcc
      841 atcagcaatt gatctgttat caatttcagc cacaggtttt attccagccg cagttcctgt
      901 taaaaatact tcgtcagcaa tataaagttc atctcgtgaa atatctctga tttcataggg
      961 aatcttattt tcttttgcta tagtcagtac agtgtctcta gtaattcctt ctaaagcccc
     1021 agatgaagtc ggtggagtaa ttaaaatact atctttaacc ataaatatat tttctgcact
     1081 cgcttctata accttcccat tcgtattaag cataattgcc tcgtcgaatc ctgcctttag
     1141 tgcttcaact ctagcaagtg ctgaattagc gtagtttgct gtagccttag caagaaatgg
     1201 cattgtccta ccatcgattc tcatccaagc agagaccatc agccgtacac ccttttcctc
     1261 gtagtgcatt tctcttttta gatgttcatc ccatacccat gtagcaattg cgatggagac
     1321 tttattgggt aaaggattaa ctcccatttt gccataacca taatatgcaa tcggacgcac
     1381 ataggattct tctacgccat ttgcatttat tgtatcaatt actgcttttt ccaattgctt
     1441 tttggaatat ttgatatcca tgaagtagat tttgccacta tttattaatc gctgcatatg
     1501 gtctgaaag
//
LOCUS       DATCMF010000288         1589 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_66163, whole genome shotgun sequence.
ACCESSION   DATCMF010000288 DATCMF010000000
VERSION     DATCMF010000288.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1589)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1589)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1589
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_66163"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(133..453)
                     /gene="rpl12p"
                     /locus_tag="VIL14_03620"
     CDS             complement(133..453)
                     /gene="rpl12p"
                     /locus_tag="VIL14_03620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein P1"
                     /protein_id="HEY8522827.1"
                     /translation="MEYVYAALLLHKLKQDINEDNVTNVIKATGSAPDAVRIKALVAA
                     LGDVDIEAALKAAPMTVATTAAAPSATGATAPETATKKEAEEEEKSEKKEEEALEGLS
                     SLFG"
     gene            complement(506..1009)
                     /locus_tag="VIL14_03625"
     CDS             complement(506..1009)
                     /locus_tag="VIL14_03625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522828.1"
                     /translation="MFGLGKIKAGDYVFAVEPEREFKRIILGRVQLVNNNSLSILGSY
                     IKPLGLLSKRQKGMLGKRSQEVLNDPDPNNCIFILIDRIETGQFYGNIDQSKNKVSWI
                     NERRFFVLEGWIKENFADLFADVIYSQSEEEKHHYRAILIEKMNSLYDKDLKEHVYAV
                     ARSSKIL"
     gene            1224..>1589
                     /locus_tag="VIL14_03630"
     CDS             1224..>1589
                     /locus_tag="VIL14_03630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HEY8522829.1"
                     /translation="MKILTELTRDASISVPQLSKNLNINSSVLYSRIKRLSKRNLIKK
                     FTIMVNENMLGLNIKATVGINRDPKRKDHIHKELLNIAEVRSLSEVTGRFDMIVNVNA
                     STLEELHNIVIERIGKIEGI"
BASE COUNT          543 a          266 c          219 g          561 t
ORIGIN      
        1 tggaatattc ttccgccctt ccattattat ttagtaggca tcatctaaga ttttgaaata
       61 attttgaggg cagaacatgt aacaatttat ctaatattaa gaataaaaaa tcaaaaataa
      121 aataatgaaa gtttatccaa ataaagagga taatccttct agggcttctt cttctttctt
      181 ttcgcttttc tcttcctctt ccgcttcctt ctttgtagct gtttcgggtg cagtagcccc
      241 ggttgcggag ggtgctgcag ctgttgttgc cacagtcatt ggggcagcct ttaaagcagc
      301 ttcaatatct acatctccta gtgcagctac aagagccttt attctaacag catcaggtgc
      361 agaaccagtt gctttaatta cattagtaac attatcttcg ttaatatctt gtttcaattt
      421 gtgtaataat aatgccgcat acacgtattc cattagttat caaaaacgga ttattataaa
      481 accataatat aaaactttca acttattata aaatctttga acttctggct acagcataca
      541 catgttcttt taaatcttta tcatagagtg aattcatctt ctctattaaa atagcacgat
      601 aatgatgttt ctcttcttca gattgagaat aaataacatc tgcaaataga tcggcgaaat
      661 tttcttttat ccaaccttcc aaaacaaaaa atcttctttc attaatccaa cttactttat
      721 ttttactttg atctatatta ccataaaact gtcctgtttc aattctatca attagaataa
      781 aaatacaatt attgggatct ggatcattta gtacttcttg agatcttttt ccaagcatcc
      841 ctttttgtct ctttgagaga agccctaatg gttttatata agatcctaga attgaaagcg
      901 aattattatt aaccaattga accctcccta aaataattcg tttaaattct ctttcaggtt
      961 ccacggcaaa gacataatct cccgccttga tcttaccaag tccaaacatt attcgaagtt
     1021 aaaagctaaa ttatatatta tttactataa tcttatttaa tctataaaaa acattaaata
     1081 ttataacata ttcttatgac attgaaaaaa ataataaaaa gtaatcaaat ttttaaatta
     1141 aatctttaaa atataattac atttattaat ccatatttat aacgtattcc ggatataact
     1201 tgcaaaggtt tgatgaactc gatatgaaaa tacttactga gctaacccgt gatgctagta
     1261 tttcggtccc acagttgagt aaaaatttga atataaattc ttcggttttg tatagtagaa
     1321 taaagcgtct ttccaaaaga aacttaatta aaaaatttac catcatggtt aatgaaaata
     1381 tgcttggtct gaatataaaa gcaacagttg gtatcaatcg tgatcccaaa agaaaggatc
     1441 atattcacaa agaattactc aatattgctg aagtcaggtc cttatctgag gtgactggta
     1501 ggtttgatat gattgtaaat gttaatgcta gtacgttaga agaattgcat aatattgtaa
     1561 ttgagagaat tggtaaaatc gaaggaatc
//
LOCUS       DATCMF010000289         1717 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_369672, whole genome shotgun sequence.
ACCESSION   DATCMF010000289 DATCMF010000000
VERSION     DATCMF010000289.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1717)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1717)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1717
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_369672"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(276..1370)
                     /locus_tag="VIL14_03635"
     CDS             complement(276..1370)
                     /locus_tag="VIL14_03635"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEY8522830.1"
                     /translation="MVIDTIRTIKLLGKWSANRFIGKKRPLIAVFSLTHYCNFYCPMC
                     PFGDSDKINQLKFAKKNDLSTSEWKSIFDKVSKYCIWSIIEGGEPTSRPDFMELVTYL
                     HTLNMPITLITNCSLLDTIDLKELKKYIQFITCSIDSVYEKSYCKIRGVSRDTYDKVM
                     KNLLLLNENNIPHYFNSVITKYNTEEFINQSYFDRAKELGSNAVSFTFVEDRSDVDYS
                     LLPDRKTMIAVCESIIDYGKRHTHPKIMIPLEYFQQIIDHGRGLYDECGVWKSIFING
                     NGTVLVPCWKYNSPENTYNLLEQSIDEIWESPKWDIAKTCHDCQVLGCIWYSSQPVTT
                     FAKNYMRGLSNIIAQQKPDILDKENNMCDN"
BASE COUNT          581 a          269 c          230 g          637 t
ORIGIN      
        1 tttatagata tcatatattt gcttaatatt tgttatttct acttccacct aaagaaaaaa
       61 cttagggttt ggaaatacaa caatagagat tctaaaatat attgcagtaa accccttcga
      121 cttctataca tgattgttac aaatacatga aaaattttta tcacatatta aaaatctagg
      181 aacattattc ataacctcac cagtgcgttt aaatcccagc cgaatcatca caatgggata
      241 ggccatttat tgggtctatc ccatttcaaa tttaattaat tatcgcacat attattttct
      301 ttgtctagaa tatctggttt ttgttgagca attatatttg acaaacctct catatagttt
      361 ttggcaaagg tggtaacagg ttgagaagaa taccatatac aaccaagtac ctgacaatca
      421 tgacatgttt tagcaatatc ccatttggga gattcccata tttcatctat gctctgttcc
      481 aataggttat atgtattttc gggagaatta tatttccaac aaggaacaag tactgttcca
      541 tttccattta taaatatact tttccaaaca ccacattcat catatagtcc tcttccatgg
      601 tcaataattt gttgaaaata ttctagtggt atcattattt taggatgagt atgtcttttg
      661 ccataatcaa ttatactttc acatacagca atcatagttt tcctatctgg taataaagaa
      721 tagtcaacat cagatctatc ttctacaaat gtaaaagata ctgcattaga tcctaattct
      781 tttgccctat caaagtagct ttgattaata aattcctcag tattatattt tgttattaca
      841 gagttaaaat aatgaggaat attgttttca tttaagagta aaagattttt cattacttta
      901 tcataagtat ctcttgaaac tcctcgtatt ttacaatagg atttttcata aacagaatct
      961 atactacagg taatgaattg aatatatttt tttaattctt ttagatcgat agtatctaat
     1021 aatgaacaat ttgtaatcaa ggttataggc atatttaaag tatgtaaata ggtaactaat
     1081 tccatgaagt caggcctact agtaggctct cctccttcta taatagacca aatacagtat
     1141 tttgatactt tgtcaaaaat acttttccat tctgaagttg aaagatcatt tttctttgca
     1201 aattttaatt gattaatttt atcagaatca ccaaaaggac acataggaca ataaaaattg
     1261 caataatggg ttaagctaaa cacagcaatt agagggcgtt ttttacctat aaaacgatta
     1321 gctgaccatt tgcctaaaag cttaattgtt ctaatagtat ctattaccat atattgggat
     1381 aggacaaaaa ctataaatct tttttttaat ttgtaaagaa gattagctct gttgcctagt
     1441 aagtattaca ggatgccaag atagtttgaa tcttttttca gaagtatcga taatgataat
     1501 tgtcatacca gaagaatttc tttttgagca aatgcaatac gatttctttc attcattaac
     1561 ctatttgtgt cttcatacat tgcaacttta gctttacatt ttcctggctt cagatatgtt
     1621 ggaatagtaa actcccatag taataacagc agcggttttt agtgtctaat actattgtct
     1681 aatatttttt agcattataa tactatatag aattatg
//
LOCUS       DATCMF010000290         1576 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_501753, whole genome shotgun sequence.
ACCESSION   DATCMF010000290 DATCMF010000000
VERSION     DATCMF010000290.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1576)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1576)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1576
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_501753"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            78..869
                     /locus_tag="VIL14_03640"
     CDS             78..869
                     /locus_tag="VIL14_03640"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: protein motif:HMM:NF010587.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008795 - NAD+ synthase activity [Evidence
                     IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD+ synthase"
                     /protein_id="HEY8522831.1"
                     /translation="MSILDIANCIIEFIRLEVSKAQSHGVVLGLSGGVDSSVAVSLAT
                     HALGNKRVLGLILPDRKVSDQKDIDDAVDLSKLLDIKYQIIDITEIKQKYIDLLPVEK
                     ISVGNLTARIRMTLLYYYANLYNKLVLGTSDKSEIMIGYFTKFGDGASDLLPLADVYK
                     TQVRELGRYLNVPKTILLKKSTPSLWLNQTAENEIGMEYEKIDNILKYLEKNNSSIRE
                     KDLIKKRFNKNDVEFIKTLILKNIHKRKSPKICYISFNNSKVNKI"
     gene            956..>1576
                     /locus_tag="VIL14_03645"
     CDS             956..>1576
                     /locus_tag="VIL14_03645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004332 - fructose-bisphosphate aldolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate
                     synthase"
                     /protein_id="HEY8522832.1"
                     /translation="MVSGRDIRLNRITKKGKMVCIPMDHGITNGPIKGLEHTSDLIYQ
                     CEDSGLTAVIINKGIIKSLPKTTSIGLITHLSASTSLSPYPNKKVLIGNVADAIRLGS
                     DAVSVHINIGAKEEPEMLEILGMVSDECDEWNVPLLAMMYPRGENIKNPYDPEIVAHV
                     TRIGAEAGADIVKSVYTGDLDSFRTVVKRCPVPIVIAGGPKSKTDAD"
BASE COUNT          594 a          209 c          279 g          494 t
ORIGIN      
        1 tcattaacta acaactatag gatttagaaa ataaaagatc gatttaatag tatatttaat
       61 taattataat tgaaatattg agcattttag atattgcgaa ttgtattatt gaatttatca
      121 gactggaagt atcaaaagcc caatctcacg gggtagtatt gggtttaagt ggaggagttg
      181 actcatctgt tgcagtatct ttagctactc acgcgttggg taataagaga gtactggggt
      241 taattttacc agatagaaaa gtatcagatc agaaggatat agacgatgct gttgacttat
      301 ccaaactatt ggatataaaa taccaaataa tagatattac agaaattaaa caaaagtata
      361 tagatttatt accagtagaa aaaatatctg taggtaatct tacagctagg attcgcatga
      421 ccttacttta ttattatgca aatctctaca acaaattagt tctaggtacc tctgataaaa
      481 gtgagataat gattggatat tttactaaat ttggagatgg tgcgtctgat cttcttccgt
      541 tagcagacgt ctacaaaact caagtaagag aattaggtag atatctaaat gttccaaaaa
      601 ctatattatt aaaaaaaagc acaccttctt tatggctaaa ccaaactgca gaaaatgaaa
      661 taggaatgga atatgagaaa attgataata ttttgaaata tctagagaaa aataattcgt
      721 ctattagaga aaaagattta ataaaaaaac gatttaataa aaatgatgta gaattcataa
      781 aaactctcat attgaaaaat atccataaaa gaaaatcacc taaaatttgt tatatttctt
      841 ttaataattc taaagttaat aaaatctaat attcatttat tcctattatt ttcttgatta
      901 tgattgttta gatatagcag atcactttta agtaggacaa atatccttca tctttatggt
      961 ctcaggaaga gacattaggt taaacagaat tacaaaaaaa ggcaaaatgg tttgtattcc
     1021 tatggaccat ggaataacca atgggccaat aaaaggccta gaacatactt ctgatcttat
     1081 atatcaatgt gaagattctg gattgacagc agtaattatt aacaaaggga ttatcaagtc
     1141 cttacccaag actactagta taggattaat aacacacttg tctgccagta cttctttaag
     1201 tccttatcca aataaaaagg tgcttattgg aaatgttgca gatgctatta gacttggctc
     1261 ggatgcagtt tctgttcata taaatatagg agcaaaagaa gaacctgaaa tgttagagat
     1321 attgggaatg gtttcggatg aatgtgatga atggaatgta ccattattag ctatgatgta
     1381 tccaagaggg gaaaacataa aaaaccccta tgatcctgaa attgtagcac atgttacacg
     1441 aattggtgca gaggctggag cagatatagt aaaatcggtt tatactggag atttagattc
     1501 ttttaggaca gtggtaaaaa ggtgtcccgt tccaattgta attgcaggtg gaccaaaatc
     1561 taaaactgat gctgac
//
LOCUS       DATCMF010000291         1571 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_195111, whole genome shotgun sequence.
ACCESSION   DATCMF010000291 DATCMF010000000
VERSION     DATCMF010000291.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1571)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1571)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1571
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_195111"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(408..638)
                     /locus_tag="VIL14_03650"
     CDS             complement(408..638)
                     /locus_tag="VIL14_03650"
                     /inference="COORDINATES: protein motif:HMM:NF013224.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC ligand binding domain-containing
                     protein"
                     /protein_id="HEY8522833.1"
                     /translation="MSTAYILINCEAGTEQETIGKLNKLSGVVEISEVNGIYDLVVKM
                     YSDAVENMKQTITRHIRTINTIRSTMTLIVIE"
     gene            complement(678..842)
                     /locus_tag="VIL14_03655"
     CDS             complement(678..842)
                     /locus_tag="VIL14_03655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522834.1"
                     /translation="MPVSASVSSNTTKSTKQYVCKVCSKLFDSAETLDSHRRFEHSEA
                     GHSQPLAGVG"
     gene            1143..1379
                     /locus_tag="VIL14_03660"
     CDS             1143..1379
                     /locus_tag="VIL14_03660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522835.1"
                     /translation="MQTRDKTEEKRDLELENIVGNLLIAEYQVDRLRTRLADLVSGYR
                     PQMMKNNASTHVFKHNNKWYKLLLRIEETDVSPA"
BASE COUNT          498 a          281 c          288 g          504 t
ORIGIN      
        1 attgaagcaa atattgaaaa gtctcacggt cctatcggtt agaccttcgg tatgacatgt
       61 atagtattga gtcactgagc cttaccttgt cttaaccgct agaatgtaga aggaatctcg
      121 agtattttat atttgatgaa aataggtttg tcgatcatat tttatgcacg gtattcgatg
      181 atcagaaaca gaaaaggctt tatcattgat ggcctccaca gggctaaggc cctgactaat
      241 gattacaatg aaagccattc atatattcct caaattacaa taattgaatg ctttggagga
      301 gcgtcaacgt gattttcctt gtgatgtcca caacttccgt cgtagtttgt ccaatacatc
      361 ctttagaaat agtcaataaa tgcatcctcg ttcatagcat tctttttcta ttcgattact
      421 attagcgtca tagtagacct gatcgtattt atcgttctta tgtgtcgtgt tatggtttgt
      481 ttcatgttct cgacagcatc agaatacatt ttaacaacca aatcataaat gccatttact
      541 tcgctaattt ctactacacc tgacaactta ttcagcttac ctatagtctc ttgttcagtt
      601 ccagcttcac agttgatcag aatatatgct gttgacatac taatcagttg ttccatcatg
      661 acacagcata ggatatatca gcctactcct gctagaggtt gtgaatgtcc tgcttcactg
      721 tgttcgaatc tccggtgaga atctaatgtt tcagcactat caaacaattt gctgcacact
      781 ttgcacacat actgtttagt tgatttagtt gtgtttgaag atacagatgc gctaaccggc
      841 attactaata atatacatag cattcatcat taatatttgg tagtcaataa catttctgac
      901 aaatagttct gaaattgata acagggatcc aaaaaccaga acagtttagc atagttgtta
      961 ttattcgatg gttgtttatg gagaaactat ggataatagt ttaattcaag aactagagga
     1021 gaatggggaa gatgtaatgg gcgttcctgt atgtggagca aacctttcgt cacccgtgta
     1081 tgatagaaca aacttcattg gagaagttca ttacaaaata ggaactagac tctatatcga
     1141 aaatgcagac tagggataaa acggaagaaa aaagagatct ggaacttgaa aatatagtag
     1201 gtaatctgct tatcgcagag tatcaagtag ataggcttcg aactcgatta gctgatttag
     1261 ttagtggata tagacctcaa atgatgaaga acaatgcgtc tacacatgta ttcaaacaca
     1321 ataacaaatg gtataaacta ttacttagaa tagaggaaac tgatgtcagt cctgcttagg
     1381 agatctcgaa gcaaagatag attttattca tatcgaatcc tactctagtc gatgaaaaat
     1441 aattagcacg tagtatttct cataaggtca ttttactagt cttaaagtaa tagcctgcat
     1501 aactatgact atgtttatct cagattctct gagagtttcc gatcctcaaa agttaaccag
     1561 tcctcttacg g
//
LOCUS       DATCMF010000292         1662 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_370010, whole genome shotgun sequence.
ACCESSION   DATCMF010000292 DATCMF010000000
VERSION     DATCMF010000292.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1662)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1662)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1662
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_370010"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..576
                     /locus_tag="VIL14_03665"
     CDS             <1..576
                     /locus_tag="VIL14_03665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522836.1"
                     /translation="IIIGLVAAILASGQTPTIFVYIGILILISVPAAAVIFGIYRNSS
                     KVKLYLASFVGAVIIGIISFSILGMHLQNPEADSQVKKEEIIADQKPVTDITKLARVN
                     ILPGSSAQGNPAYDPPQLIVKKDNVGMIWVNQDNVPHTVTSLKDDGKSFDSSIIMANA
                     NYTLLRSDLKEKEYDYFCTIHPYMKAKFQLE"
     gene            749..1162
                     /locus_tag="VIL14_03670"
     CDS             749..1162
                     /locus_tag="VIL14_03670"
                     /inference="COORDINATES: protein motif:HMM:NF025819.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M67 family metallopeptidase"
                     /protein_id="HEY8522837.1"
                     /translation="MESISIHNRDLHTLEKLAVNTLPNESCAILLGKRSNTKPIVQYI
                     LPMNNSSHSSIEFNIDADDLYNAYDKARLMNLDIIAIFHSHPSPPIPSAMDKIFMLIN
                     PVIWIIYSTSSHTFKAFISTNDDQIQEINILLIKD"
     gene            complement(1152..>1662)
                     /locus_tag="VIL14_03675"
     CDS             complement(1152..>1662)
                     /locus_tag="VIL14_03675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043039 - tRNA aminoacylation [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="amino acid--tRNA ligase-related protein"
                     /protein_id="HEY8522838.1"
                     /translation="DFTKNEFVKNAIETKFERLTYQACIEELKENGDRVEYGDDLSDS
                     SLRKLGQLHPGFYFITGWPLKLKPFYILENEKDHFLSDSFDLQIGYLELISGGSRQHD
                     PSKIRNRLAEQGLNPDKFSDHLKVFDWGMPPHAGCGLGLDRLMMCLTGSMNVREVVLY
                     PRDPYRISP"
BASE COUNT          559 a          284 c          234 g          585 t
ORIGIN      
        1 attataattg ggttagttgc tgctatcttg gcaagtggac aaacacccac aatatttgtt
       61 tacattggaa tactaatact tatttctgtt cccgcagctg cagtaatttt tggaatatat
      121 agaaacagtt caaaagtaaa actttatctt gcatcatttg ttggtgcagt tataataggt
      181 atcatttctt tttctatcct tggaatgcac ctccaaaatc cagaagccga ctcacaagta
      241 aagaaagaag aaataatagc cgatcaaaaa cctgtaacag atataacaaa attagctaga
      301 gttaatattc ttccaggatc ttcagcccaa ggaaatcccg cttatgatcc tcctcaattg
      361 atagtcaaga aagataatgt gggtatgatt tgggtaaacc aggacaatgt gccccataca
      421 gtaacaagtt tgaaggatga tggtaaatca tttgattctt ctataattat ggcaaatgct
      481 aattatactc ttttgcgttc tgatctgaaa gaaaaggaat atgactattt ttgtacaatc
      541 catccataca tgaaggcaaa attccagtta gaataaaatt ttgttcatta gtattaaata
      601 caattaattt ttatcattcc ctaaattata gtaaattata ttatattata aataattatt
      661 tcagtagtta ttcgaataac tattgatatt attttgttct atttacttta tggatataaa
      721 ggatatcttc tttttgtttt ttatgaatat ggaatctata tcaattcata atagggactt
      781 acatacacta gagaaattag cagttaacac attacctaat gaatcttgcg ctatattgtt
      841 aggaaaaaga tctaatacca aaccaattgt tcaatatatt ttacctatga acaattcttc
      901 gcactcatcg atcgaattta atatcgatgc ggacgatcta tacaatgcat atgataaagc
      961 tagattgatg aatttagata ttattgccat ttttcattca catccttctc cacccattcc
     1021 ttctgctatg gataaaatct ttatgttaat taatcctgtt atttggataa tttactctac
     1081 ttcttcgcac acctttaaag catttatatc tactaatgac gatcaaatac aggaaattaa
     1141 tatactttta attaaggact aattctgtaa ggatctcttg ggtataaaac aacttctctt
     1201 acattcattg atcctgttaa acacatcatt aatctatcaa gacctaaacc acagccagca
     1261 tgtggaggca ttccccaatc aaacaccttt aagtggtcgg agaacttatc tggattcaga
     1321 ccctgttctg ctaatctatt tctgatttta gagggatcat gttgtcgtga ccctcccgat
     1381 attaattcta gataaccaat ttgtaagtca aatgaatcag aaagaaaatg atctttttca
     1441 ttttcaagaa tgtaaaaggg ttttaatttt aaaggccagc cggttataaa ataaaaacca
     1501 ggatgtaatt gacctaactt tcgtaaagat gaatcagata aatcatctcc atattctaca
     1561 cgatcaccat tttcctttag ttcttcaata caggcctgat atgttagtct ctcaaatttt
     1621 gtctcaattg cgttttttac aaattcattt tttgtaaaat ct
//
LOCUS       DATCMF010000293         1501 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_435316, whole genome shotgun sequence.
ACCESSION   DATCMF010000293 DATCMF010000000
VERSION     DATCMF010000293.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1501)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1501)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1501
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_435316"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1321)
                     /locus_tag="VIL14_03680"
     CDS             complement(<1..1321)
                     /locus_tag="VIL14_03680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HEY8522839.1"
                     /translation="MPKFKSTQDIIRIIDTKDQIRNFGVIAHVDHGKTTMSDSLLAAS
                     GIISPSVAGQALALDSMKLEQNRQMTIRGANVTLFYEHEGKEYVINMIDTPGHIDFTG
                     RVTRALRAIDGVVVVSDSVEGIMTQTETVTRQALEERVRPVLYINKIDRLVKELRLDP
                     PAMQKWLSNIIAEFNKLIDIYAEPELKEKWKVSIQANNVAFGSAKDRWGFNFKVAQKK
                     GFSFKDVYDAYTSDDPSKIKDLSEKAPLHEAVLGMVVQHHPPPYIAQKYRIPKIWPGD
                     LNSDIGKSLINCDEKGPAVMMVTTINVDPQAGRIATGRLFSGTVKDGDEVYLIDAKRP
                     GKVQSVNIYMGNTREVVSVIPAGNIPALLGLDYAVAGETISTVKNIVAFESIKYVSEP
                     VVTIAVETKHPKDLPKLVEALRKITVEDPNLIIKINEESGETLMAGMG"
BASE COUNT          470 a          287 c          213 g          531 t
ORIGIN      
        1 cacccattcc agccattaat gtttctccac tttcttcatt tattttgata ataagatttg
       61 gatcttcaac tgttatttta cgaagagctt ctacgagctt aggaagatct tttggatgtt
      121 tagtttctac agcaattgtt acaacaggtt cggaaacata tttaatagat tcaaaagcaa
      181 caatattttt aacggtcgaa attgtttcac cagcaacggc ataatccaaa cctaaaagag
      241 caggaatatt accagcaggt ataacactca caacttctct agtatttccc atatagatgt
      301 ttacggattg aacttttcca ggccgtttgg catcaattaa ataaacttca tctccatctt
      361 taacagtacc tgaaaataat cttcctgtag ctattctgcc agcttgtgga tctacattaa
      421 ttgtagtcac catcattaca gcaggacctt tttcatcaca atttatcaat gatttcccaa
      481 tatcagaatt taaatctcct ggccatatct ttgggattct atatttttga gctatataag
      541 gaggaggatg gtgttgaaca accataccta gaactgcttc atgaaggggt gctttctcag
      601 aaagatcttt gatcttagat ggatcatcag aagtatatgc atcataaaca tctttgaaac
      661 taaatccctt tttttgggct accttgaaat taaaccccca tctatcttta gcagatccaa
      721 aggctacatt attggcttgt atgcttacct tccatttctc tttcagttct ggttctgcat
      781 aaatatctat taatttattg aactctgcta taatatttga tagccatttt tgcattgcag
      841 gcggatctag acgtaattcc tttaccaatc gatctatttt atttatataa aggacaggtc
      901 taactctttc ctctagagct tgtcttgtta cagtttcagt ctgagtcata ataccttcta
      961 cagagtcaga aacaactaca accccatcaa ttgcacgtaa agctcttgtg actctcccag
     1021 taaaatcaat gtgccctggt gtatctatca tatttataac atattcctta ccttcgtgct
     1081 catagaatag tgttacatta gctcctctta tagtcatctg cctattttgt tcaagtttca
     1141 ttgaatccag agctaatgct tgtcctgcca cggaagggga aataattcct gatgcagcta
     1201 aaagactatc actcatggta gttttaccat gatctacatg tgcaataaca ccaaaattac
     1261 gtatttgatc tttagtatca ataattctaa taatatcttg agttgatttg aatttaggca
     1321 tatagaaaaa aaaaattaaa taggttatta aactttcctt gatcagaaaa tagttaattt
     1381 ttacttattc aaaagataaa cttactataa ttttctcatt tttgaacata tagcattaat
     1441 tattatataa accatcaaag atagtagaaa aattgacact tgaaattttc ttaatttata
     1501 c
//
LOCUS       DATCMF010000294         1553 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_650772, whole genome shotgun sequence.
ACCESSION   DATCMF010000294 DATCMF010000000
VERSION     DATCMF010000294.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1553)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1553)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1553
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_650772"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..593
                     /locus_tag="VIL14_03685"
     CDS             <1..593
                     /locus_tag="VIL14_03685"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004107 - chorismate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HEY8522840.1"
                     /translation="ENAKERRYTNEVRCPDLPTAEKMKDSIIHARKTGNSLGGIVECV
                     SVGLPVGLGEPIFSSLESDLSKALFSIPAVKAVEFGSGFKGTKKTGYENNDLFIKEEG
                     KVVTLTNNSGGILGGLSNGMPLTIRIGFKPAASIAKTQKTLDLSSNSLVDLQVPGRHD
                     PCVVPRAPPIVEGIVSIVLSDHAIKAGFIPMVLKGY"
     gene            595..>1553
                     /locus_tag="VIL14_03690"
     CDS             595..>1553
                     /locus_tag="VIL14_03690"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEY8522841.1"
                     /translation="MVEQQNLDYLREEMQNITNQIIKLVHDRMKVAKKIGHIKQQLKI
                     EIEDEKVEQEIKKTVLQLTKDIGMDVEFSGRLLNLLLSESVKLQNVQNTSNKSSTHIA
                     IFMKAKELEKTGKKIIHMEVGEPDYPPPLKVKEELAKIYDNKRYHYTEISGLPQLRQA
                     ISQKFSNIVPEQVLVTPGGRFAVFCAISSLLKSGDELINIEPSWPAYKECADFIGAKT
                     RVLKTTLEDKWVPNLKMLENLININTKMIIINYPNNPTGKILDSQLLEKIVSIAREYN
                     LFILSDEVYSDYSFGKYNSILDYQYDKSIMVSSFSKTYGMTGF"
BASE COUNT          584 a          214 c          277 g          478 t
ORIGIN      
        1 ttgagaatgc aaaggaacgc cgttatacta atgaagtaag atgtcctgat ctacctaccg
       61 cagaaaagat gaaagattca attattcatg caagaaagac aggaaattct ttaggtggaa
      121 tagtagaatg tgttagtgtt ggattaccag tgggattagg agaacctatt ttttcatcat
      181 tagaatccga tttaagcaaa gcattattta gtattcctgc tgttaaagca gtagaatttg
      241 gttctggttt taaaggaaca aaaaaaacag gttatgaaaa taatgattta tttataaaag
      301 aagaaggaaa agtggtaaca ttaaccaata attctggtgg tatattaggt ggtttatcta
      361 atggaatgcc tcttacgata agaataggat ttaaacctgc agcctcaatt gcaaaaactc
      421 aaaaaacatt ggatttatct tcaaattctt tggtagatct tcaagttcct ggcagacacg
      481 atccttgtgt tgttccgcgt gctcctccta ttgttgaagg aattgtatca atagttttgt
      541 ctgatcatgc aattaaagct ggatttattc ccatggttct aaagggttat tgaaatggtt
      601 gaacaacaga acttagatta cttaagagag gaaatgcaaa atataacgaa ccaaataatt
      661 aaattggtcc atgatagaat gaaagtagca aaaaaaattg gccatataaa acaacaattg
      721 aaaattgaaa tagaagatga aaaggtagaa caagagataa aaaaaaccgt ccttcaactt
      781 accaaagata taggaatgga tgttgaattt tctggtagac ttttgaatct tcttctttcg
      841 gaatctgtaa aattacaaaa tgttcaaaat actagtaaca aaagttctac tcatattgct
      901 atatttatga aagctaaaga acttgaaaaa actggaaaga aaataatcca tatggaagtt
      961 ggtgagcctg attatcctcc tcctttaaaa gttaaggagg aattagcaaa aatatatgac
     1021 aataaaagat atcattatac tgaaatttct ggactaccac aactccgcca agccatatcc
     1081 caaaaatttt ctaatattgt accagaacaa gttttagtta ctccaggagg tagatttgcg
     1141 gttttttgtg caattagctc cctcttgaaa tcaggggatg agttaattaa tattgaacca
     1201 tcatggcctg cttataaaga atgtgcagac tttattggtg cgaaaacgag agtattaaaa
     1261 accactcttg aagataaatg ggtgcctaat ttgaaaatgc tagaaaacct aataaatatt
     1321 aatacaaaaa tgattattat aaattatcct aacaatccaa caggaaaaat acttgattct
     1381 caattactgg agaaaatagt ttctatagca agagaatata atttatttat tttaagcgat
     1441 gaggtttatt cggactattc atttggtaaa tataatagta ttctagacta tcaatatgat
     1501 aaaagtatta tggtatcgtc tttttcaaag acttatggaa tgacaggatt cag
//
LOCUS       DATCMF010000295         2256 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_370205, whole genome shotgun sequence.
ACCESSION   DATCMF010000295 DATCMF010000000
VERSION     DATCMF010000295.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2256)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2256)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2256
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_370205"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..354
                     /locus_tag="VIL14_03695"
     CDS             <1..354
                     /locus_tag="VIL14_03695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522842.1"
                     /translation="LISVSENNKFNFRYLKYSSLEDMFKIILSSAQSALGISSLLYFL
                     NYKNQNLMFIYNSSIGSSLIHYNILSEKPLTKFVQLNKQSGEYKYINDVGNESHSIYI
                     PILELENTTLEFPLN"
     gene            627..1328
                     /locus_tag="VIL14_03700"
     CDS             627..1328
                     /locus_tag="VIL14_03700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522843.1"
                     /translation="MKFIRGHDPSFKFSSYFKLRNPSPENSDVSSLISKRLEDIGFIE
                     VTKGKFLSNVKNYKFTTYGLFYVFQNISIYPPQFLIKYQDNIILQTLVYKFFNEKTIK
                     TGTGRFYSQIVSYLEECCNVSLNTINDIKSAETEEEKVKIFDKLKFDLEWLIRRLCFK
                     LTIMYNETNLLSINPNLNDDVKVTLYEYENKMKIQLSKDSQFIALLKNLHKDFNEGYS
                     ELINLHNENSDNIDK"
     gene            complement(1618..2082)
                     /locus_tag="VIL14_03705"
     CDS             complement(1618..2082)
                     /locus_tag="VIL14_03705"
                     /inference="COORDINATES: protein motif:HMM:NF014665.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0016653 - oxidoreductase activity, acting
                     on NAD(P)H, heme protein as acceptor [Evidence IEA];
                     GO_process: GO:0006784 - heme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="COX15/CtaA family protein"
                     /protein_id="HEY8522844.1"
                     /translation="MSKQQQNKHFPRKMLFLSFTSLALIYTIMLIGVYITSSYQGLSC
                     PDWPLCPNGLGIPSPDYLFEHIHRMLVIITSGFIIATAIYAYINARSVSKTAILAAVI
                     VIIQIVLGMIMVYSKLHALLVATHLATGILLFAMLLLTFISSYRERKNSLVN"
BASE COUNT          858 a          276 c          280 g          842 t
ORIGIN      
        1 ttgattagcg tgtcagaaaa taataaattc aattttagat atctgaagta tagttctctt
       61 gaagacatgt tcaagataat cctgtcatca gcccaatctg cgttgggtat tagctcattg
      121 ctttattttc taaattataa gaaccaaaat cttatgttta tctataatag ttcaatagga
      181 agcagtttaa tacattataa tatattgtca gaaaaaccct taaccaaatt tgttcagtta
      241 aataaacaaa gtggagaata taaatacatt aatgatgtcg gaaatgaatc tcattctata
      301 tatataccaa ttctggaatt agaaaataca acattggaat ttccacttaa ttaattaatc
      361 aatcaattaa tcatctatta tttatttatt tgttcaaata ataagacaca tataattttg
      421 tattggttgt tgttatagaa attgacataa taatacatta aatttaatat aaacataaca
      481 tttaatttat aaattttcta ataaatttat ataacttata aatctctaat acaattacta
      541 tactaattat ggcttactca gattatatat cttccttgtt gtcttatcca aaaatcaatt
      601 tgacacaaga ggagcgatca tttataatga aatttattag aggtcatgat ccatcattta
      661 aattttcatc ttattttaaa ttaagaaatc cgtctccaga gaatagtgat gtctcatctt
      721 tgatttcaaa acgcttagaa gatattggat ttatagaagt tacaaaaggc aaatttctga
      781 gtaatgtcaa gaactataaa tttactactt atggattatt ttatgtgttt caaaatattt
      841 ccatttatcc tccacaattt ctgataaaat atcaagataa tataattttg caaacgttag
      901 tatacaaatt ctttaatgaa aaaacaatta agacaggtac cggaagattt tattcccaaa
      961 ttgttagtta tcttgaagaa tgttgtaatg taagcttaaa tactataaat gatattaaat
     1021 cagctgaaac agaagaagaa aaagtcaaaa tatttgataa attgaagttt gacttggaat
     1081 ggttaatacg aagattatgt tttaaattaa caattatgta taatgaaacc aatttactat
     1141 caattaaccc aaatctaaat gatgatgtca aagttacact ttacgaatat gaaaataaaa
     1201 tgaaaataca attatcaaag gactctcaat ttattgcatt attaaagaat ttacataagg
     1261 actttaacga aggttacagc gaacttataa atttacataa tgaaaattct gataacatag
     1321 ataagtaata taaattacga tagatatttt agtattatat attcttctta acttgtacgt
     1381 aattttagca gagtacaatt atttaataat aaagctattt ttcagaaatt tttgcatctt
     1441 gagtatctat ataatttatt tcataattat attattcaga attaaaattt tattttgttt
     1501 atcttgaata gcaacttatt taatagctaa tgaaaaaact ttttattctt tattaactaa
     1561 tttaaactat acttcatttt ttgattgaat ttatttgttc tatatttttt gtatatccta
     1621 gttaactaag gaattttttc tttctctata tgatgaaata aaagttaata ataacattgc
     1681 aaataataaa attccagttg caagatgtgt tgctactagt aaggcgtgca attttgaata
     1741 taccatgatc atacctaaaa ctatctgaat aataactatg actgctgcta atattgcagt
     1801 tttactcacg gatcttgcat taatatatgc ataaatagct gttgcaataa taaaaccact
     1861 ggtaattatg accaacatcc gatggatatg ttcaaaaaga taatctggac ttggaatacc
     1921 taaaccgtta ggacataatg gccaatcagg acaggacaac ccttgatagg atgaagtaat
     1981 ataaactcct attaacatta ttgtatatat caaagccagt gatgtaaaag ataggaatag
     2041 catttttcta ggaaagtgtt tgttctgctg ctgcttagac atggtagttt attctaaata
     2101 tttttcttga cccaaataaa tgtaaatcta ttattattta tgggatttta tttattaatt
     2161 atcgtagtag tatgctaaag atgttaattg ttgtttctta gactttctac aagatattgc
     2221 gaaattctat aaaatatagc atatataatt tataaa
//
LOCUS       DATCMF010000296         2676 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_195849, whole genome shotgun sequence.
ACCESSION   DATCMF010000296 DATCMF010000000
VERSION     DATCMF010000296.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2676)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2676)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2676
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_195849"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..759
                     /locus_tag="VIL14_03710"
     CDS             <1..759
                     /locus_tag="VIL14_03710"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEY8522845.1"
                     /translation="FEDKSLVKQYMEYTNLDKQYYSYDYKNIHFISMGTETPYEQGSQ
                     QFDFVKHDLMKTNTNPSIDWIIVYYHQPMYTSKTHHEGLESFRDLYHSLFTKYGVDLV
                     LQGHIHNYQRSYPLIYNSENPSNPIIEQSAILDNEYNNEENNNSNNVYVEDQGTVFAI
                     VGTGGQELHGLDDQAYFTANQLEDHGFLELKTINNGKSLVGEFYSNDGSIIKDEFVIE
                     KSSSSSSSSAVDDTFDDNIPNNNPYNLKEITYEK"
     gene            complement(847..1080)
                     /locus_tag="VIL14_03715"
     CDS             complement(847..1080)
                     /locus_tag="VIL14_03715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522846.1"
                     /translation="MIKTLQNIQDILGSIRDYDVTIDYLKKLEPSKEIQEIVNNEIEQ
                     RRLKYEEFLKFCKRRLHISRDSFFARVKSLFPS"
     gene            complement(1123..1692)
                     /locus_tag="VIL14_03720"
     CDS             complement(1123..1692)
                     /locus_tag="VIL14_03720"
                     /inference="COORDINATES: protein motif:HMM:NF017085.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAD domain-containing protein"
                     /protein_id="HEY8522847.1"
                     /translation="MNFITLITYSHYIVDTISFFNKTNSYIKNSNEKNIHDVRTSVRR
                     FNAAFLVLPKRYRKGCLLSDYNQLANKFFRVNSELRDMDIIQEKLNAYPQTDQRNIVI
                     DLLKKNRQSNLEGAKTIALSLKNMNSNKILDKMDITEKELQKRYNKLLFELISKIETN
                     FLIVITNTLKIKELHELRKDCKKLKYILE"
     gene            complement(1755..1979)
                     /locus_tag="VIL14_03725"
     CDS             complement(1755..1979)
                     /locus_tag="VIL14_03725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522848.1"
                     /translation="MWDAIILSGNHSLLSFELFKNIQRTYSWMKYYNSELESTDNEKS
                     KEKTLLELLDDVKKSIHKTMQQLYEERKLS"
BASE COUNT          949 a          366 c          312 g         1049 t
ORIGIN      
        1 tttgaagaca aatcattagt aaaacagtat atggaataca ctaatcttga caagcaatat
       61 tattcctatg attataagaa tatacatttt atctctatgg ggacagaaac accatacgaa
      121 caaggatcac aacaatttga ctttgttaaa catgatttaa tgaagacaaa tacaaatcct
      181 tctatagatt ggataattgt ttattaccac caaccgatgt atacctcaaa gactcatcat
      241 gaaggtttag aatccttcag ggatctatat catagtcttt ttactaaata tggtgtagat
      301 ttagtattac aaggccatat ccataattat cagaggtcct accctttaat atacaatagt
      361 gagaaccctt caaatcctat aattgaacaa agtgcaatat tagacaatga atataataat
      421 gaagaaaata ataatagtaa taatgtttat gttgaggatc aaggtacagt ttttgccata
      481 gttggcactg gtggacagga attacatgga ttagatgacc aagcttattt caccgcaaac
      541 caattagaag atcatggatt tttggaatta aagacaataa acaatggaaa aagtcttgtt
      601 ggagaatttt attctaatga tggtagtata attaaagacg aatttgttat cgaaaaatca
      661 tcatcttcat catcatcatc agctgttgat gatacttttg atgataatat cccaaataat
      721 aatccatata acttgaaaga aattacatat gaaaaataaa taagaatcaa ttaacttttt
      781 taatcaattg tataactgct aatgataatt ttcctttcac ttatatagaa aatcttttaa
      841 ttatctctat gatggaaata aacttttaac ccttgcaaag aatgaatctc tagatatatg
      901 taaacgtctt ttacaaaatt ttaaaaattc ttcatacttt aatcttcttt gttctatttc
      961 attattaact atttcctgaa tttctttact aggttctaat ttttttaaat aatcaatagt
     1021 gacatcataa tcacgaatac tcccaagaat atcttggata ttctggagag tttttatcaa
     1081 tcctatagaa atattatttt tattgttatt atcttttacc gatcattcta aaatgtactt
     1141 tagtttcttg caatcttttc ttaattcatg taattctttt atctttaaag tatttgtgat
     1201 aacaatgaga aaatttgtct ctatttttga aattaattca aaaagaagtt tattatatct
     1261 tttttgtaat tctttttctg ttatgtccat tttatcaaga attttatttg aattcatatt
     1321 tttaagagat aaagcaatag tttttgcacc ttctaaatta gattgtctat tctttttcaa
     1381 taaatcaatt acaatatttc tttgatcggt ttgtggataa gcatttaatt tttcctgaat
     1441 gatatccata tctctaagct cactatttac tctaaagaat ttattagcta gttgattata
     1501 gtctgacaat aaacatcctt ttctatacct tttaggtaat actaaaaaag cagcgttaaa
     1561 tctcctaact gaagttctta catcatgaat atttttttca ttagagtttt taatataact
     1621 gttagtttta ttaaaaaagc taatagtgtc aacaatatag tgactataag ttattaaggt
     1681 tataaagtta atatgtaaaa atttctattg atattttgga taataaggca gataaattct
     1741 ttcttttaat atagtcaaga taattttctt tcttcatata gttgttgcat agttttatgt
     1801 attgattttt taacatcgtc taatagttct aataaagtct tttctttaga cttttcatta
     1861 tcagtacttt ctaattcact gttataatat ttcatccaag agtaggtgcg ttgaatattt
     1921 ttaaataatt caaatgataa cagtgaatga ttacctgata gaattatagc atcccacata
     1981 tctgtgaaaa aaggtttata atctctgtat tgtaatgatt catctataaa atgtaatctc
     2041 tgttcgagat catctataat aaatatgaaa agattatttt ttgtcctttt atcacgttcg
     2101 cgttctgatc tcttgtatgt ccaatgttct agataaaccg taaaccaaat tattccggca
     2161 agaagtacaa tttctacaaa taaataatcc cattctattg tcagtatttg ttcaccttat
     2221 cataaattta tgataagaca gattttattt aacattatcg atattggtag aatgagtaaa
     2281 atcgtttcat gtttatcaca ttaacaataa ttattaaaaa taatttttta taacaataag
     2341 cttatgaagc atatctatat tcactcacat gtaaacatac tctttcaata ttcttgtttt
     2401 gcaagttgta ttgtgaggtt tgattcttag aagattatga caacatggac atttataact
     2461 attccaatct agaaaaattt cacattcatt acatctttta aacccatttg aatagtaact
     2521 gaatgaattg ttctccttaa ttgctttgta atttttacaa atacctttac aataattttt
     2581 caactgtata ttttcctatc atataatatt taataattat aaacaatatt aatatcaata
     2641 actaattgaa tgatttttta aataaatcaa tcaatc
//
LOCUS       DATCMF010000297         1990 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_196047, whole genome shotgun sequence.
ACCESSION   DATCMF010000297 DATCMF010000000
VERSION     DATCMF010000297.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1990)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1990)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1990
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_196047"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            320..1048
                     /locus_tag="VIL14_03730"
     CDS             320..1048
                     /locus_tag="VIL14_03730"
                     /inference="COORDINATES: protein motif:HMM:NF024777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LamG domain-containing protein"
                     /protein_id="HEY8522849.1"
                     /translation="MDKSATTIISSSSVFVLFLYFGLTIEEQENNTNSILNHIEIFAQ
                     EENNPPVVKHPKIIEFTGINYTDVINSREINPNSFTVSVWFNTAMNVTSEIDNAFLLN
                     KGGFGSDRPGFNLNYGIWLNNREKVSGGFETAVGNDYFVTSQGSYADGIWHNTILTFD
                     DGPNLLKLYIDGVEVATNTPNIGTTPDNTGKQPIRLGANSLVEKGIINGNYTGQLNDI
                     QVWDYAFTKEQVANLFNTESKILR"
     gene            complement(1456..1890)
                     /locus_tag="VIL14_03735"
     CDS             complement(1456..1890)
                     /locus_tag="VIL14_03735"
                     /inference="COORDINATES: protein motif:HMM:TIGR03618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PPOX class F420-dependent oxidoreductase"
                     /protein_id="HEY8522850.1"
                     /translation="MSEMTKDEIRSFLLQGTFTGKLGTINKNGTPHVVPIWYTIDNED
                     NIIFNTGGNSVKAKNIQRDNRVRLCVDDQFPLYSFVTIDGIAEIISDEPAEIFKWAKT
                     IAARYMGYDKAEEYGKRNSSKGELLLKIKPSKVIGQKDLAGW"
BASE COUNT          708 a          281 c          291 g          710 t
ORIGIN      
        1 tgggtattaa caccttgcat ggacattctc caattagtat atgtggattt aatccaaaac
       61 aatatttgga ttttatttat tatagtttgc taaaacctat tctctatttt atttctaata
      121 aagagatatg agattttata ttatcattat aacattttgt aaaagaaggg tccaaattat
      181 aacatttttc actattctta ttacttataa aaatcagtaa aggaataata caataatgat
      241 tctctatcta aaatagatat aatatgttac ttaatgatta ttagtattct aaatataatt
      301 aaaaagttat ttaacaaata tggacaaatc agcaactact atcataagct ctagttctgt
      361 ttttgtttta tttttatatt ttggtttaac aatagaagaa caagaaaaca acacaaatag
      421 tattttaaat catatagaga tatttgctca agaagagaat aatccaccag tcgttaaaca
      481 cccaaagata atagagttta caggtattaa ttatacagat gtcataaata gccgcgagat
      541 taatccaaat agttttacag tatctgtatg gtttaataca gcaatgaatg tcactagtga
      601 aatagataat gcgtttttac taaataaagg gggatttgga agtgataggc caggatttaa
      661 tcttaactat ggaatttggc ttaacaatag agaaaaagtt tcaggtggat ttgagaccgc
      721 agtgggaaat gattattttg ttacttctca agggtcttac gcggatggaa tatggcataa
      781 tacaattcta acttttgatg atgggccaaa cctgttaaag ttatatatag atggtgtaga
      841 ggttgcaacc aacacgccaa atataggaac cacacctgat aatactggaa aacaacccat
      901 cagattggga gcaaattctc tagttgaaaa gggaataata aatggaaatt atacaggaca
      961 attaaatgat atacaagtat gggattatgc ttttactaaa gaacaagtag caaacttgtt
     1021 taatacagaa tcaaagatac ttagataaat acagcattta aaataaatta tttagtgtac
     1081 ctttacaatg ttagtaattg gcaaataggt cgacaatttg agtttctaat agatattata
     1141 attgctcttg ctgtggcttt attataggag aagataatta agagggaaac ctgtttattc
     1201 tcactattta aatttacaaa tatagaaccc atatttgatg gacgaagatt tcaattctac
     1261 taatgtgtta atcattctga gtttaattta tattcttaat ctagacacaa gaattaaata
     1321 ttaaattacc gatctcaatt atatgtcata ctcaaagccc tcagaactcc tataccatca
     1381 acgactcgta aaatattttt aaccttatat tgagaattta taaataaata aatttctttg
     1441 aaaagtttga attatttacc atcctgctaa atctttttga ccaataactt tggacggttt
     1501 tatttttaaa aggagttctc cttttgaact atttctcttg ccatactcct ctgctttatc
     1561 gtaacccata taccttgctg ctattgtttt agcccatttg aaaatttcag ctggctcatc
     1621 actaattatt tctgcaatac catcaatagt aacaaatgaa taaagaggaa attggtcatc
     1681 tacacatagt cgaactcggt tatcgcgttg aatatttttt gcttttactg aattgccacc
     1741 tgtattaaat ataatattgt cttcgttgtc tatggtatac caaataggaa ctacatgtgg
     1801 tgtcccattc ttgttaattg ttccgagttt ccctgtaaaa gttccttgca aaagaaagct
     1861 tctgatttca tctttagtca tttctgacat taatattatt agttaagtag attattataa
     1921 gttagatcaa aagatttttc tttttaaata actatttatt ttgaactaca aaattgtgtc
     1981 aaaatcagtt
//
LOCUS       DATCMF010000298         1547 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_568450, whole genome shotgun sequence.
ACCESSION   DATCMF010000298 DATCMF010000000
VERSION     DATCMF010000298.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1547)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1547)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1547
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_568450"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(144..575)
                     /locus_tag="VIL14_03740"
     CDS             complement(144..575)
                     /locus_tag="VIL14_03740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase"
                     /protein_id="HEY8522851.1"
                     /translation="MTSDSIKNNSRNKNNSKNTTKWFSNITLLRESQIMKIHYITAVG
                     ALFVVAIHIMMRLIMPFNMSLEFENVILNYKNVFYALLLESILILIAIHGFNGLRVIL
                     LEIRQTQIWERAVNILVIVAMIGIIAYGTRTIIIANGFSLG"
     gene            complement(588..1067)
                     /locus_tag="VIL14_03745"
     CDS             complement(588..1067)
                     /locus_tag="VIL14_03745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase"
                     /protein_id="HEY8522852.1"
                     /translation="MTSAKSAKRIDDINNKNDRTNREGLRGWLNPIIYGWERVSYWFQ
                     RLTGIFLLVYFIGHVYETSSLVSGPDAWAAMLEMTQTIGGHIFLILVIGASTLHTVNG
                     IRLIFTQSGQGLGKPGRPDYPYDPTSVNNKQRSGLWIAFILAAVAMLYGANVLFSGE"
     gene            complement(1069..>1547)
                     /locus_tag="VIL14_03750"
     CDS             complement(1069..>1547)
                     /locus_tag="VIL14_03750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019563.1"
                     /note="part of four member fumarate reductase enzyme
                     complex FrdABCD which catalyzes the reduction of fumarate
                     to succinate during anaerobic respiration; FrdAB are the
                     catalytic subcomplex consisting of a flavoprotein subunit
                     and an iron-sulfur subunit, respectively; FrdCD are the
                     membrane components which interact with quinone and are
                     involved in electron transfer; the catalytic subunits are
                     similar to succinate dehydrogenase SdhAB; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="succinate dehydrogenase/fumarate reductase
                     flavoprotein subunit"
                     /protein_id="HEY8522853.1"
                     /translation="TIDISNNQVLSEEKRIYDGIFRGRGEVNPYEVRKKLTDTMDEKA
                     YVFRTEENLISGLKKIRELKALTWKHVDDKSKEYNTNFTNVMEIDAMLRTAEVVLMGA
                     INRKESRGAHARLDYANRDDINYLKHTLAYYSSEDEPKLVWHPVTFTRYAPVERKY"
BASE COUNT          454 a          311 c          210 g          572 t
ORIGIN      
        1 aaaacacgta gtttcacgga gcttttattg ctgctgctag tggtggatat attcgatctt
       61 tttatttcta taggactttc attctttatt tcttttcttt tatctttttt aaatatattc
      121 atattctaag ctcacccata taattaaccc aaagagaatc cattggcgat gattatcgtt
      181 cgggttccat atgcaattat tccaatcatt gcaactatca ctaatatatt cactgccctt
      241 tcccaaattt gagtttgtct tatttctaat aaaataactc taagaccatt aaacccatgt
      301 atggctatta gtatcaagat agactctagc aatagggcgt aaaaaacatt tttataattt
      361 aatataacat tttcgaactc tagcgacata ttaaatggca taattaatct catcataata
      421 tgaatagcaa ccacaaataa tgcccctaca gcagtaatgt agtgtatttt cattatttgg
      481 ctttctctta aaagagtaat atttgaaaac catttagttg tgttcttact attattttta
      541 tttctactat tattttttat actatctgat gtcatttgat tattctctca ctctccacta
      601 aaaagcacat ttgccccata taacatcgca acagcagcta aaataaacgc aatccacaat
      661 cctgaacgtt gcttattgtt aacagatgtc ggatcatagg gataatcagg tctaccaggc
      721 tttcctagcc cttggccaga ttgagtaaag attaatctta ttccatttac agtatgtaaa
      781 gtacttgctc ctattacaag aattagaaat atatggcctc ctatagtctg ggtcatctct
      841 aacattgctg cccacgcatc aggaccactg accaatgagc tagtttcata aacatgacca
      901 ataaaataca caaggagaaa gattcctgtt aatctttgaa accaataaga aactcgttcc
      961 catccatata ttattggatt aagccatcct cttagccctt ctctattggt tctgtcgttt
     1021 ttattgttga tatcatcaat ccgtttggcg gatttagcag aggtcatatt aatacttcct
     1081 ctccactgga gcatatcttg taaatgtgac gggatgccat actaattttg gttcgtcttc
     1141 agaactgtaa taggctaaag tgtgctttaa ataatttata tcatctctat tcgcatagtc
     1201 gagtctggca tgtgctcctc tagactcttt tctatttatt gctcccatta atactacctc
     1261 cgctgtcctc agcatcgcat caatctccat cacattagta aaattagtat tatattcctt
     1321 tgacttatca tcaacatgtt tccaggttaa tgctttaagt tctctaattt tttttaatcc
     1381 agaaattaga ttttcttcag ttcgaaaaac atatgctttc tcatccatag tgtcagttaa
     1441 tttttttctc acttcgtatg gattcacttc gcctcttcct ctaaaaatgc catcataaat
     1501 tcttttttct tcagaaagga cttgattgtt tgatatatcg attgtag
//
LOCUS       DATCMF010000299         1735 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_196166, whole genome shotgun sequence.
ACCESSION   DATCMF010000299 DATCMF010000000
VERSION     DATCMF010000299.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1735)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1735)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1735
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_196166"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1433)
                     /gene="topA"
                     /locus_tag="VIL14_03755"
     CDS             complement(<1..1433)
                     /gene="topA"
                     /locus_tag="VIL14_03755"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR01057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003917 - DNA topoisomerase type I (single
                     strand cut, ATP-independent) activity [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase I"
                     /protein_id="HEY8522854.1"
                     /translation="MVTTRINKPFTLVLCEKSHSATRIAQALSNNNVKIMFSNGVKIL
                     DVFSDKGQHYVVCSAVGHLYRLADVTRAFNIYPTFDLEWAPVYSIHRNLSKLRRLIKT
                     ISEISENATDFIHACDYDQEGEVIGYNILEYACKNKYGKSLRAKFSTLTDDEIRVSFE
                     NLLSPNMRLAEAGRSRHMIDFIYGVNLSRALSHSFKAWNKDRFRNLSIGRVQGPTLAF
                     VVRKEIEIREHIPIPYWVLLAIFEKDGLRINSYYKRGKVVTLSEANTVFNDCTGKTGL
                     IKEIKTNKVTLYPPPPFNLGDLQKEAYRLFTITPKNALSIAEGLYLNALISYPRTSSQ
                     RLPTTINYSKTISDLSQISSKYDDFARKLLSKNKSLSPRDGIGVDSAHPAIYPTGVNP
                     NHKLNQMEFKVYDLIVKRFFATLGSPSTSLNTTLSIEVNDNHIFNAQGKKLLDQGWTY
                     FYQSFSKLGESLVPILKKGNILKKIMIT"
BASE COUNT          505 a          323 c          307 g          600 t
ORIGIN      
        1 gtaatcataa ttttttttag aatgttgcct ttttttagta tgggaacgag ggattctccc
       61 agtttggaaa atgattgata aaaatacgtc cacccttgat ccagaagttt ctttccttgt
      121 gcgttgaaaa tatgattatc attcacttca attgataaag ttgtatttag acttgtagat
      181 ggactaccaa gagtagcaaa gaatctttta acaattagat catatacttt aaattccatt
      241 tgattcagtt tatggtttgg atttactcct gttggatata tagccggatg cgcagagtcc
      301 actcctatac catcccttgg tgaaagactt ttgttttttg aaagtaattt cctggcaaag
      361 tcatcgtatt tgctgctaat ttgagataaa tctgaaatgg ttttgctata atttattgtg
      421 gttggaagcc tctgactaga agttctagga taagaaatta aagcattcag gtaaagccct
      481 tctgcgattg aaagcgcatt tttgggagta attgtgaata atctatatgc ttccttttgt
      541 aagtcaccta ggttaaaagg cggtggcgga tatagtgtga ccttgtttgt cttgatttct
      601 ttaattaatc cggtttttcc tgtacagtca ttaaatacag tatttgcttc tgataacgta
      661 actacctttc ccctcttgta atatgagtta attctcaatc catctttttc aaatattgca
      721 agtaagaccc agtatggaat tgggatatgt tccctaattt ctatttcctt gcgtactaca
      781 aaggcgagtg taggtccttg tacccttcca attgatagat tacgaaacct gtctttattc
      841 cacgctttaa acgaatgcga taacgctctc gaaagattaa ctccatagat aaaatcgatc
      901 atatgccgag atctacctgc ctccgctaat ctcatattgg gagatagtag gttttcaaat
      961 gaaactctta tctcatcatc agttagggta gaaaatttag ctcttaaaga tttgccatat
     1021 ttgttcttac atgcgtattc taaaatattg tacccaatta cctctccttc ttgatcataa
     1081 tcacaggcgt ggataaaatc tgtcgcattc tctgatattt cagatatcgt ctttattaga
     1141 cgtctcaatt tgctcaaatt tctatgtatc gaataaacag gagcccattc taaatcaaat
     1201 gtcggataaa tattgaaagc tcttgtgaca tcagccaagc ggtaaaggtg accaactgct
     1261 gaacaaacaa catagtgttg acctttgtcc gaaaaaacat ctaatatctt aactccgttt
     1321 gaaaacatga tttttacgtt attgttgctt agtgcttgtg ctatcctagt tgcagaatgg
     1381 gacttttcgc aaagtacgag tgtaaagggt ttatttattc tggttgtaac caaattgaat
     1441 tttccctaca cgaatttaag acagtatcag atttcatgtc gccaatttag actccgactt
     1501 tagctcgtct cagtagtctg gtaaataaac taataccgaa agggctgatc ctaaaggaag
     1561 cggcatgacc tatcttcttg accaatttat agcctgaata tctccactgg aagttctaaa
     1621 gtatggcaca ttattatttg acctaaatgc aactcttggc tctgccctgg ttattaacat
     1681 gcgagtctac taccatcagc tagagaattc ccaatcagag cttttaacat cagta
//
LOCUS       DATCMF010000300         2528 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_196581, whole genome shotgun sequence.
ACCESSION   DATCMF010000300 DATCMF010000000
VERSION     DATCMF010000300.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2528)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2528)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2528
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_196581"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..577)
                     /locus_tag="VIL14_03760"
     CDS             complement(<1..577)
                     /locus_tag="VIL14_03760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522855.1"
                     /translation="MIYQNINPALLRPYLGYRALEIVKKTLDRTTQMARMIIRHPLRR
                     HVKSRFPHMNVSRIDEPVSTDPMFTNCKSIYHGFTAAQIFYGTKSHTIFVYGIKGKGE
                     FPKVYKEFIREHEAPSALRRDNAKEEQSETVKEINREYMVKDQLTEPYHPQQNPVESN
                     AIRYLKGQVSHLLDMTGAPDSLWYMATQYVAA"
     gene            complement(692..>2528)
                     /locus_tag="VIL14_03765"
     CDS             complement(692..>2528)
                     /locus_tag="VIL14_03765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522856.1"
                     /translation="PSTVADRTLRNKPAKNRPKFENVKWDGLSEHFKIFRRSIEGHLI
                     QAGAGYLTEDEFIKSYKSCKYDDIDYLETNDFWNTYKISIPQAKHDRQFLYGMLLTAT
                     IKLQHKTIIKYQKGYDGIMAWDELIAEYECDGFMELRVEQLETLIHVPYNTSESVVKY
                     IEKFQAYLEELISMKPNDYSNSTMKRMLLKSLKTAPHIAHLVQKCRDSSSMNYDDTAR
                     YLRSNSILVDNVNSLKPPSRLMHVEDRTSRIEEPKDKTLEQVTQLFHTIATQNGMYTT
                     YKMFNTQQFRDSLRIPPAIWAELEPSIREKINEARERAKKKRPYNNNHSGENKKHDNK
                     QENNHASSAAKIPHQYPNVPPRSSVANLVNSLADIDLNEDNSEDTDDDMLECSAYMVR
                     RSIPIDPPSDIIDVKAHFEYIDNSIYDNKIYAISDGGADSCILGKYAKVIDYTGRYAN
                     LVGYDPKTTRTDKVPIVTALIKAISLIDKIPVILKVNEAPYNPSTPITLLSEYQIREY
                     GLVIDSVAKKHYSSTKTKGTQRFQVNQWVHINFEDRGGLMGFELMPIEKGDEQRYDVI
                     TITSPEKWIPHKFQRQNIDEISPYDPSDLDSDQNYDYPAVLNHTS"
BASE COUNT          674 a          468 c          436 g          950 t
ORIGIN      
        1 ttgctgccac atactgggta gccatatacc atagtgaatc tggtgctcct gtcatgtcta
       61 gtaagtgact cacttgtcct ttaaggtatc taatagcatt ggactctaca gggttctgtt
      121 gtggatgata tggctcagtt aactgatctt taaccatgta ttctcggtta atttctttaa
      181 ctgtttcact ctgctcttct tttgcattat ctcttctgag tgcagatggt gcctcatgtt
      241 ccctgataaa ttccttatat acttttggaa actccccttt cccttttatg ccatacacaa
      301 aaatggtgtg tgatttggtt ccataaaaga tttgagctgc agtgaatcca tgatatatgc
      361 ttttacaatt agtgaacatt ggatctgtag atactggttc atcaatcctt gagacattca
      421 tatgaggaaa tctggactta acatgtcttc tcaaaggatg tcttatgatc attcttgcca
      481 tttgagtagt tctatccagt gtctttttca ctatctctaa agctctgtat cccagatatg
      541 gtctaaggag tgcaggattg atattctgat atatcaccct atgccatgtg gtggttgcac
      601 aaatctgtgt gtctactatt ttatcttgta tatttagggt attaaagtac tttaagtctt
      661 cccctatagt ctcccctgaa gatgtattta gtcaagatgt atgatttaaa actgctggat
      721 aatcataatt ttggtcagaa tccaaatctg agggatcata tggtgaaatt tcatctatgt
      781 tttgcctttg aaatttatgg ggaatccatt tttcaggact agtgatagta atgacatcat
      841 atctctgttc atcacctttc tctataggca ttagttcaaa tcccatgagt ccccccctat
      901 cctcaaagtt tatatgaacc cattgattga cctgaaacct ctgtgtacct ttggttttag
      961 tactagaata gtgtttcttt gcaactgaat caataactaa tccatattct cttatttgat
     1021 actctgataa caaggtgatg ggagttgaag ggttgtatgg tgcttcattg actttgagga
     1081 taactggtat cttatctatt aaacttatgg ctttaatcaa tgctgttaca atagggactt
     1141 tgtctgttct tgtggtttta gggtcatatc ctaccaaatt ggcatatcta ccagtataat
     1201 caatgacttt ggcatatttt cccaaaatac aggaatctgc acctccatct gatatggcat
     1261 aaatcttatt atcatatata gagttgtcaa tgtattcaaa atgtgctttg acatcaatga
     1321 tgtctgaagg tggatcaata ggaatacttc ttctgaccat gtatgctgaa cattcaagca
     1381 tgtcatcatc tgtatcctca ctattgtctt catttaaatc aatgtctgca agggaattaa
     1441 ccagattggc tacactgctt ctgggaggta catttggata ttgatgtgga attttagcag
     1501 ctgatgaagc atgattattt tcctgtttgt tatcatgctt tttattctct ccactatgat
     1561 tgttattata tggcctcttc tttttagctc tttccctagc ttcattgatc ttttctctga
     1621 tggaaggctc caattctgcc catatggctg gtgggatcct aagagaatct ctgaactgct
     1681 gtgtattgaa cattttataa gttgtgtaca taccattctg tgttgcaatt gtatggaaca
     1741 actgtgtaac ttgttcaagt gttttatctt taggctcctc tatcctagaa gtcctgtctt
     1801 caacgtgcat aagtcttgaa ggaggtttca aactgttcac attgtccact agaatggaat
     1861 tagatcttaa ataccttgct gtatcatcat aattcatact agaagaatct ctacactttt
     1921 ggaccaggtg agcaatatgt ggtgcagttt taagagattt taaaagcatt cttttcattg
     1981 tagaattaga ataatcatta ggtttcatgc tgattaattc ttccaagtag gcttggaact
     2041 tttcaatgta ctttactaca gattcactag tgttataagg tacatgtatc agtgtctcca
     2101 gttgttctac cctcaactcc atgaacccat cacattcata ttctgcaata agttcatccc
     2161 aagccatgat accatcatat cctttctgat atttaataat ggttttatgt tgtagtttta
     2221 tggttgctgt aagtaacatg ccatatagaa attgtctatc atgtttggct tgaggaattg
     2281 atatcttata ggtgttccaa aagtcattgg tttccaaata atcaatatca tcatatttgc
     2341 aacttttata agacttaata aattcatctt ctgttaaata tcctgctcct gcttgaatga
     2401 gatgtccttc tattgacctt ctaaaaatct taaaatgttc acttaaacca tcccatttaa
     2461 cattttcaaa cttaggccta tttttagcag gtttgttcct taatgttcta tctgctacag
     2521 ttgacggt
//
LOCUS       DATCMF010000301         3304 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_370822, whole genome shotgun sequence.
ACCESSION   DATCMF010000301 DATCMF010000000
VERSION     DATCMF010000301.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3304)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3304)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3304
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_370822"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            57..416
                     /locus_tag="VIL14_03770"
     CDS             57..416
                     /locus_tag="VIL14_03770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEY8522857.1"
                     /translation="MKISNEKFDSKSEVKALEAKCQILDIWDVLGRRWSLQILKNLSI
                     KKVVRFNELKRSLKGISSTVLSDRLSELEQEGLITKKIYPEIPLKVEYALTTKTKDLE
                     LILQSLNKWCEKWETKN"
     gene            complement(630..1013)
                     /locus_tag="VIL14_03775"
     CDS             complement(630..1013)
                     /locus_tag="VIL14_03775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522858.1"
                     /translation="MTEKFSLPFEIVESKKTDKNKISAGLKKVEIFVSPEQVDEVISE
                     IEDLKLEATLYDSHGYGQSKQKIRSGKAGGQTAVVSSNRKTIVTIAESDILEDLIKKL
                     KHINDKSEKKIGVISIQSVDALVHL"
     gene            1186..2148
                     /locus_tag="VIL14_03780"
     CDS             1186..2148
                     /locus_tag="VIL14_03780"
                     /inference="COORDINATES: protein motif:HMM:NF016370.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF559 domain-containing protein"
                     /protein_id="HEY8522859.1"
                     /translation="MDNYYKPPKATTSEWKLRNILKSKKIPFYYNKVIWYTSCDYFTP
                     DLIIGKNLIIEVDGKVHDKEHRKTLDRIRQRALENMGYTVHRVKNEEIRDKPNDVANE
                     INEIYTILSDTKDKTETTITELKKPLYIEPIPKVIKFNLESWARSLNEELNDESWSVD
                     FFRKSLPRFHPELIKNQCAIERLILLLHGLSLRKTQDGNKLDFEYSLNFFKKSLNLME
                     EIFPENGNMAAIHLKNMFNETSPGFFKNLIFRGGPNINPGIVSIKNKDSLNCHIDSFN
                     KNLAELGITVEYSDIIQECKATLQKFNEKEKIDFTWLIELMDTN"
     gene            2282..2659
                     /locus_tag="VIL14_03785"
     CDS             2282..2659
                     /locus_tag="VIL14_03785"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine-R-sulfoxide reductase"
                     /protein_id="HEY8522860.1"
                     /translation="MNYNKLNPEEERVIIGKATEPPFTGEYDNFYEDGTFICRRCNMP
                     LFSSKSKFDSGCGWPSFDEYFPHAIKHVPDPDGIRTEIECANCNAHLGHEFLGEQLTD
                     KNTRECVNSLSIRFIPKDKELPK"
     gene            2660..3220
                     /gene="msrA"
                     /locus_tag="VIL14_03790"
     CDS             2660..3220
                     /gene="msrA"
                     /locus_tag="VIL14_03790"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008113 - peptide-methionine (S)-S-oxide
                     reductase activity [Evidence IEA];
                     GO_function: GO:0033744 -
                     L-methionine:thioredoxin-disulfide S-oxidoreductase
                     activity [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HEY8522861.1"
                     /translation="MNNNNNKTEIATLANGCFWCTEAIFKKIKGVKYILPGYTGGTLK
                     NPSYDQVCTGKSGHAESIQIEFDPKIIPFEKILDIFWHTHDPTTLNRQGNDIGTQYRS
                     AIFYHDEKQKEIAEKSKRDLEKEDVYKDPIVTEITPFKNFYTAENYHKDYYEKHKDDP
                     YCNFVIDPKLHKLLQKYRNEVKEEYK"
BASE COUNT         1298 a          447 c          495 g         1064 t
ORIGIN      
        1 atcagtctta ttgttttaat atttattact ataatataat ttaatttagt atattggtga
       61 aaatatctaa tgaaaaattt gattctaaat cagaagttaa agctttggaa gcaaaatgcc
      121 aaatattaga tatttgggat gttctaggta gaagatggtc attacaaata ttaaaaaatt
      181 taagtattaa aaaggtagtt agatttaatg aattaaaaag aagtctaaaa ggaattagca
      241 gtaccgtttt atctgataga ttatcagaac ttgaacaaga aggtttaatt acaaaaaaaa
      301 tatatccaga aattccacta aaagttgaat acgcattaac aaccaaaaca aaagatctgg
      361 agctgatttt acagagtctt aataaatggt gtgaaaaatg ggaaactaaa aattagattt
      421 agaattcaat atcgttattt atacaatata atgaattaag gagggatgca atgcaattta
      481 gactttaaaa ttaaaatgga ggggaagtga tttgaatctt atttgtatgt agttataata
      541 tagtctgaat tctatagcat tttaacccat attacgattt tgtaaaaaaa taaaatattt
      601 caggataaaa actagatcta agaataatgt tatagatgga ctaaagcatc aactgattga
      661 atggagatta caccaatctt tttttcactt ttgtcattta tatgcttgag ctttttaatt
      721 aaatcttcta aaatatctga ctctgctatt gtaactatag ttttacgatt tgaggatact
      781 actgcagttt gtccccctgc tttcccagat cttatttttt gtttggactg tccataacca
      841 tgagagtcat acaaggttgc ctctaatttt aaatcctcta tttctgatat tacttcatca
      901 acttgctctg gactaacaaa aatttctact ttttttaaac ctgcagaaat tttattttta
      961 tcagtctttt tagattctac tatctcaaag ggtaaactaa atttttctgt caatatgaaa
     1021 taaaaccaac cgaaagttat aaagtatttg ttaatagaat ttatcaactg aaaaattcat
     1081 aggctttact ctttcaatct aaaataagtt aatttgtaaa tacaaaaaga caaattaaaa
     1141 tctatactac actttttaag agtagcatat atcacaaaat cattaatgga caattattat
     1201 aagccaccta aggcaaccac ctctgaatgg aagttgagaa atatattgaa atctaaaaaa
     1261 attccatttt attacaataa agttatttgg tatacaagtt gcgactattt tacaccggat
     1321 ttgataattg gaaaaaacct tattattgaa gtagacggca aggtccatga taaagagcat
     1381 agaaaaacat tagataggat acgtcagaga gcattagaaa atatgggtta tactgtacat
     1441 agagtaaaaa acgaagaaat tcgtgataaa ccaaatgatg tagcaaatga aattaacgaa
     1501 atttacacta tattatctga tactaaagat aaaacggaaa ctactataac agaattaaaa
     1561 aaacctcttt atattgaacc tattccaaaa gttataaagt tcaatttaga atcatgggct
     1621 aggtcattaa atgaagaatt aaacgacgaa agctggtcag ttgatttttt tagaaaatca
     1681 ttaccaagat ttcatcctga attaattaaa aatcagtgtg caattgaaag attaatttta
     1741 ttgttacatg ggcttagtct tcgaaaaaca caagatggta ataaattgga ttttgaatat
     1801 tcattaaatt tctttaaaaa aagtctaaat ttaatggaag aaatatttcc ggaaaatggt
     1861 aatatggctg ctatacatct aaaaaatatg ttcaatgaaa cttctccagg ttttttcaaa
     1921 aatttaatct ttagaggtgg accaaatata aacccaggaa tagtttcaat caagaataaa
     1981 gattctttga attgccatat agatagtttc aataaaaact tggcagaatt aggaataact
     2041 gtagaatatt cagacattat acaagaatgt aaagcaacat tgcaaaagtt taatgagaag
     2101 gaaaaaatag attttacttg gcttatcgaa ttgatggata ctaattaaat tttttacatt
     2161 attctttaac aatagataat tttattgcat tactaccatt tctctagcaa tgactctgct
     2221 atattacaaa atattacaag aaatcagaag gttcaaaaat ctgttcaggc aagttaatag
     2281 tatgaattac aataaactaa accctgagga agaacgagtc attataggta aagcaactga
     2341 acctcctttt actggtgagt atgacaattt ttacgaagac ggaacattta tctgtcgtag
     2401 gtgtaatatg cctctttttt catcaaaaag caaatttgat tcgggatgcg ggtggcccag
     2461 ctttgatgaa tatttccccc atgcaataaa gcatgttcct gaccctgatg gaataaggac
     2521 agaaattgaa tgtgcaaatt gcaatgcgca tttaggacat gaatttcttg gagagcagtt
     2581 gacagacaag aatacacgcg aatgtgtcaa ttcattatct attcgtttta tcccaaagga
     2641 caaggagtta ccaaaataaa tgaataataa taataataaa accgaaatag caacacttgc
     2701 taatggctgt ttctggtgta cagaagcaat tttcaaaaaa attaaaggtg ttaaatatat
     2761 tctccctgga tacactggag gaacattaaa aaatccgtca tatgaccaag tatgcactgg
     2821 taaatctggg catgcagaat caattcaaat agaatttgat cccaaaatta taccttttga
     2881 aaaaatcctc gatattttct ggcatactca cgatccgaca acgctcaata gacaaggtaa
     2941 tgatattggc actcaatatc gatctgcaat cttctatcat gatgaaaaac aaaaggagat
     3001 tgcagagaaa tcaaaaagag acctagaaaa agaagatgtt tacaaagatc caattgtgac
     3061 agaaattact ccctttaaga atttttatac tgctgagaat tatcataaag attattatga
     3121 aaaacataaa gatgatccat attgcaattt tgttattgat cccaaactac ataaactgct
     3181 tcagaaatat agaaatgaag taaaagaaga atataagtag ttttttatta acgactaaag
     3241 tattattcta taaatactta aatataaaat aatattatga atcacttcaa ttaaattcac
     3301 taat
//
LOCUS       DATCMF010000302         2033 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_303717, whole genome shotgun sequence.
ACCESSION   DATCMF010000302 DATCMF010000000
VERSION     DATCMF010000302.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2033)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2033)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2033
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_303717"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            93..767
                     /locus_tag="VIL14_03795"
     CDS             93..767
                     /locus_tag="VIL14_03795"
                     /inference="COORDINATES: protein motif:HMM:NF013117.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel domain-containing
                     protein"
                     /protein_id="HEY8522862.1"
                     /translation="MDYSNGKNGSIDDNISNDRIEKESKSAENDIDIVKSKKTKAKFF
                     KRIILLGIIFTIAFVTIQYFLKPIISKDYLMLLQSIQVSIVGYFVIEIVSNAFHDLTY
                     DYLKDTSKSIKILMRIVGAIVVIAIIISYLSNDPVVAAAIGTISGLVVGFASQNIIGN
                     IIAGLYLALLRPFKLGDEITAFSNTGIIYDIGLISTKLKTSDNKIVLVPNSSMVTTTI
                     ILNKRP"
     gene            complement(853..1509)
                     /gene="hsp20"
                     /locus_tag="VIL14_03800"
     CDS             complement(853..1509)
                     /gene="hsp20"
                     /locus_tag="VIL14_03800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0042026 - protein refolding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="archaeal heat shock protein Hsp20"
                     /protein_id="HEY8522863.1"
                     /translation="MSFPNDIDPYNFFRQFFGGSGGRRRREGRGFGGWNFDDIFREFD
                     DMRRETERIFSEQFKNIENKVPKDLIKEYDTPEGGKVREVGPIVYGYSMTIGPDGKPN
                     IQEFGNVKSVSGRGSFEQPSLSAEREPLIDISTTDKEVKIVAEMPGISKEKIKIDAYD
                     KYVEIKSEDPNRKYHKQIEVPEGTDIESARSNYNNGVLEITFQKREQQKPKGRQINIE
                     "
BASE COUNT          699 a          309 c          270 g          755 t
ORIGIN      
        1 agataacttc tacatatttc catttgttat gtatgataat catgcattga gattatcaat
       61 aaacttattt cagtacctca agttatggat gtatggacta ttctaacgga aaaaatggta
      121 gtattgatga taatatcagt aatgacagaa ttgagaaaga aagcaagtca gctgaaaacg
      181 atatcgatat cgttaaatca aaaaaaacaa aggcaaaatt ttttaaaaga attattcttt
      241 taggtattat atttacaata gcatttgtta caatacagta ttttctcaag cctataattt
      301 ctaaagatta tctcatgcta ttacaaagca tacaagtctc aatagtcggc tattttgtaa
      361 tagaaatagt tagtaatgca tttcatgatc ttacttatga ttatctaaaa gatacttcca
      421 aatctataaa aattctgatg aggattgtag gtgcaatagt tgtaatagca attataattt
      481 cctatttaag taatgatcca gttgtagctg cagcaatagg aactatatca ggtttagttg
      541 taggttttgc ttctcaaaat ataataggaa atatcatcgc aggattatat ttggctttac
      601 ttaggccatt taaattagga gatgagatta ctgcatttag taacacagga ataatatatg
      661 atatcggttt aatttcaacc aagttaaaaa ccagcgacaa taaaattgtt cttgtaccta
      721 attcttctat ggttactacc actattatat taaataaaag accataaagc cgtgattcta
      781 tattcttatt ttgttaagta tgtgataata ggaaaaatca tcaaataggt tagtattgat
      841 taataaaatt ggttattcta tatttatttg tctacctttt ggtttttgtt gttctctctt
      901 ttggaatgtg atttcaagaa ctccattatt gtaatttgat cgtgcactct ctatatcagt
      961 accttctggc acttctattt gtttgtgata ttttctattg ggatcttcac tttttatctc
     1021 tacatattta tcgtatgcat ctatttttat tttttcttta cttattccag gcatttctgc
     1081 aacaatttta acttctttat ctgtcgttga gatatcaatt aaaggttctc tttctgctga
     1141 aagagaaggt tgttcaaacg atcctctccc cgaaacagat ttaacattac caaattcttg
     1201 tatatttggt tttccatcag ggcctattgt catggagtaa ccatatacta ttggacctac
     1261 ttctctaact tttcctcctt ctggagtatc gtattcttta attagatctt ttggtacttt
     1321 attttcaata tttttaaact gctctgaaaa tattctttct gtttctcttc tcatatcatc
     1381 aaattctcta aatatatcat caaaattcca accaccaaaa cctcttcctt cacgtcttct
     1441 acgtcctcca ctacctccaa agaattgtct aaagaaattg tatgggtcta tatcattagg
     1501 aaaactcatg taattaaaac acagccgttt gtaataaagt tatataaaat tagcttagat
     1561 taacaagtaa ctaaaaaata atgttaagct taaaatatga aaaaactaag atttgtaggt
     1621 gctaaactat gagtttacga gtcaaagata atctggcacg tacactcatc tttactaaca
     1681 agtattcttc tattgctcta tctatgtttt tttgaaatcc agtaatatta taaattaact
     1741 cgaacttatg attatcgtat gaaataaaaa actaaagaat ttgaataact aagttccaat
     1801 ggtcaataca aatacaggtt caactcagat acaaaaattt aatccaataa ttatgattaa
     1861 ccatgattta tgatccgtta acaattatct attacagata taacattagg caagttctta
     1921 taccataaaa attaatataa tgatatgaat aacaataata cattcatagt tgatgtgata
     1981 ggtataaatt tactatcgct attaacatca gattcaattt tcaggagagg aaa
//
LOCUS       DATCMF010000303         2304 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_652509, whole genome shotgun sequence.
ACCESSION   DATCMF010000303 DATCMF010000000
VERSION     DATCMF010000303.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2304)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2304)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2304
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_652509"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1374)
                     /locus_tag="VIL14_03805"
     CDS             complement(<1..1374)
                     /locus_tag="VIL14_03805"
                     /inference="COORDINATES: protein motif:HMM:NF014044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF87 domain-containing protein"
                     /protein_id="HEY8522864.1"
                     /translation="MKILYKNSTDELILLAMKSDTASKGDYLLIHDEKSDRKMIVQIY
                     DEEYLSSQSLIEDIVKDEVVVASSIENLHDPLDIGNLSRMIRDARLFKAKIRASIDSE
                     SKFSNEVTWLPSRVYSKINRMKLSEINALVNRTGIYSIHIGNSGWDNEQFEIYGEDLD
                     GKLNIVTGKKESGKSHLSKLLIKTLVEYGAFVIVFDLNNEYGGLAWNKDGMPSALHDQ
                     ITILEPGGGLGFSLDYCGKAAISSMLKNALDMPAASLREFFRIWDWLENKNTLDIEAL
                     GNAINSWNTNELVRDALISRYHEIYSSGLFVSTQSSNHDGLRFEYLTSKKKGLALVLN
                     MGKAMPVVRRMIVELVLTKVVELLGIGAIPPIFLFAEEAHLYIRDTYWEDIITRMRHF
                     GIYATFITNQPDAISDGIYRQVDNIFLFNFTNGTDLDKISKVSLADNDTVRSIVRTLP
                     QRHCLVIG"
     gene            complement(1371..2282)
                     /locus_tag="VIL14_03810"
     CDS             complement(1371..2282)
                     /locus_tag="VIL14_03810"
                     /inference="COORDINATES: protein motif:HMM:NF020933.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA double-strand break repair nuclease NurA"
                     /protein_id="HEY8522865.1"
                     /translation="MIFSNGEKRLAPINGWSSSSKHPYTTITTIHPLQENTTILAIDS
                     SSIQIAETDEGILYAVKSGITTAFRGQTQTHFKIGPMLFYLSEDTLKHSELDHRIAKL
                     VLFDSESAKRLIRVRVERAIQLELSRRFSSSILLVDGSLRSSVFENREQTLKKVVENC
                     SLYKNAIVGISKSTKLRILDKISLPLTKIKGPCYMDIELIIKSLIRNTMGDSLLVKFG
                     NSYTSPILRADIATVGGDRDRSLGRVLGNDSIARGYPETLQLAHHISTFTSTEISCLK
                     SHVLNNYDVTELASEDIRKKLLGSIPI"
BASE COUNT          653 a          477 c          400 g          774 t
ORIGIN      
        1 gccaataacc aagcaatggc gttggggtaa tgttctaact atagatctta cagtgtcatt
       61 atctgctaat gagacttttg atattttatc caaatctgtt ccattggtaa aattgaacaa
      121 aaaaatatta tctacctgac gataaatacc gtcactgatg gcgtctggtt ggtttgtaat
      181 aaatgtggca tagatcccaa aatgtctcat tctagttata atgtcttccc agtacgtatc
      241 tctgatatag agatgagcct cttcagcgaa taggaaaata ggtggaatcg cacctattcc
      301 cagaagctct actaccttgg ttaacaccaa ttctactatc attcttctga caactggcat
      361 tgctttaccc atattcagta ctaaagccaa gccttttttt ttggaagtga gatactcgaa
      421 cctcaatccg tcgtgattag aactctgagt actaacgaat aggcccgatg agtaaatttc
      481 atgatatctt gaaataagag catctcttac taattcattg gtattccacg aattaattgc
      541 attacccaat gcttcgatat ctaatgtatt cttattttct agccaatccc atattcgaaa
      601 gaattctcgg agcgaagcgg caggcatatc taaggcattt ttgagcatac tggaaatagc
      661 agccttacca caataatcga gagaaaaacc caaccctccc ccaggttcca atatcgttat
      721 ctgatcatga agcgcagaag gcattccgtc tttattccat gctaatccgc catattcatt
      781 attcaagtcg aatacaatta caaatgctcc gtattcaacg agagttttga taagtaattt
      841 cgatagatgg gattttcccg attctttttt tcctgtgact atgtttagtt taccatcaag
      901 atcttctcca tatatttcga attgttcgtt atcccatcca ctattcccaa tgtgaataga
      961 atagattccg gttctattaa ccaacgcgtt tatttcagaa agcttcatcc tgttgatttt
     1021 agagtacact ctggatggga gccacgttac ctcattcgag aatttcgact cggaatcaat
     1081 actggctctt atcttagctt taaacaatct cgcatctcta atcattcgtg acaagttacc
     1141 tatgtccagg ggatcgtgta aattttctat acttgatgca actacaactt cgtcctttac
     1201 aatatcctca attagtgatt gagaagatag atattcttca tcgtaaattt gaactatcat
     1261 tttcctgtct gatttttcgt catgaataag caaatagtca cctttacttg cagtgtccga
     1321 tttcatagca agtaagatga gttcatcagt actattctta tagagaattt tcatatcgga
     1381 atcgaaccca atagcttttt acggatatcc tctgatgcca gctctgttac atcgtagttg
     1441 ttcaagacat ggctttttag acaagatatc tctgtgctcg tgaaagtaga aatatggtgt
     1501 gcaagctgta gggtttctgg ataacctcta gcaattgaat catttcctag tactctccca
     1561 agcgatctat ctcgatctcc ccctactgtt gcaatatctg cacgcaatat tggggaagta
     1621 tagctatttc cgaattttac taaaagacta tctcccatgg tgttccgaat taggctttta
     1681 attatcaatt caatatccat ataacagggg cctttgattt tggtcaatgg aagagaaatt
     1741 ttatcaagaa tcctaagctt cgtactttta cttattccga ctattgcatt tttatatagt
     1801 gaacaatttt ccaccacttt tttgagagtc tgttctctat tctcgaaaac tgacgatctc
     1861 aaggacccat ccactaataa aatggagctt gaaaaacggc gtgagagctc taactgtatt
     1921 gcccgttcta ctctcactct aattagtctc tttgcagact cactatcgaa tagaacgagc
     1981 ttagctattc gatggtcaag ttcggaatgt ttgagagtat cttcactcaa ataaaacagc
     2041 atcgggccta ttttgaaatg ggtttgtgtt tggccacgaa aagctgtagt gattccgctc
     2101 tttacggcat agaggatacc ttcatctgtt tcagcaatct gaatactact tgaatcaatc
     2161 gccagtatag tcgtattttc ttgtagaggg tgaatggttg ttattgttgt atatggatgc
     2221 ttgctgctgc tgctccatcc gttaattgga gccagtcttt tctctccatt gctaaaaata
     2281 atctgctttt tacataagaa gctg
//
LOCUS       DATCMF010000304         2463 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_652519, whole genome shotgun sequence.
ACCESSION   DATCMF010000304 DATCMF010000000
VERSION     DATCMF010000304.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2463)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2463)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2463
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_652519"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            243..1133
                     /locus_tag="VIL14_03815"
     CDS             243..1133
                     /locus_tag="VIL14_03815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522866.1"
                     /translation="MAEDEELKEKKLRGSGGYVIARISDYEQKKGNLGGPELFIAGIG
                     RLSKDRILKYYCNKCEKDYPTSPDLKYENPNEDVGEGVVLIEKGEYKCSVCNAVISQY
                     RKFNNETPSPSKTNSFAQSKSSDVTKSVNDISDSSPKNKSESEKSILPSNTYEENTSD
                     SIQSESIDTKSSNITIAKGKYFPIQSIIGMPVYDQEAMLVGNVQEIGLRKSLNGIIQI
                     TLKIDNRDKTSETNGNELYNEITWSNISKIGDIVLISGEQKKIQSSNTSPIDKKICIT
                     CQYHNESDALYCEQCGKKLE"
     gene            complement(1160..>2463)
                     /locus_tag="VIL14_03820"
     CDS             complement(1160..>2463)
                     /locus_tag="VIL14_03820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="acetate--CoA ligase family protein"
                     /protein_id="HEY8522867.1"
                     /translation="GVIRVDTMQELFETSTAFEKQPIPPSNGGVVIVSNAGGPAIIST
                     DACSKYGLKMADISQSESEIAKVIPPHGSARNPVDIVGDADFNRFEKVLDEVLSNANV
                     SAVVTMCTPSATLDYNELAQTIIKTSKDSGKTMLAALMGLAEGIENKKILSDGGIPHF
                     MYAEPAIRTLEAMFRHRRWIEKEDTPPKKFEVDKTKARDVLENVTKSNRINLLEEEGY
                     EILKAYGFSTPKKFLATNEEESAKAAEEIGYPVVMKIVSPQIIHKSDAGGVKIGINNQ
                     QEAIKAYNEILLNVKKYKSDAEIKGILVQEMIGSSKETILGAKRDPLFGPLIMFGLGG
                     IYVEVLKDVIFRIAPIDEQQAKEMVESIKTIKLLKGVRGEKESDIDGIVESIQRLSQL
                     VTDFPEIEEFDMNPLLVLEKGNGVRAVDVRIGLKNQKDKTS"
BASE COUNT          807 a          409 c          338 g          909 t
ORIGIN      
        1 ttcttttata gctagtaata attctttatt tagtcccagt tcatcgaata gtcttgtcat
       61 taaatttcac tagtttaaca aaaatctttc accttatcta atctaaatct tttgtgattt
      121 ataaaaaatt tatgatgata ttattaagaa attaaactta ttttaaaaat aataataaaa
      181 taagaagaca atacaaacac taatacgact gtttttgcgt tattatgatg atatatttaa
      241 tgatggctga agacgaagaa ctaaaagaaa aaaagctacg aggctctgga ggctatgtta
      301 ttgccagaat ttcggattat gaacaaaaaa aagggaatct gggtgggcct gaattattta
      361 tagcaggaat tggacgatta tcaaaagaca gaattttaaa atattattgc aataaatgtg
      421 agaaagatta tccaacctcc ccagatttaa agtatgaaaa tccaaatgaa gatgtcggtg
      481 aaggagttgt tttaattgaa aaaggtgaat acaaatgctc agtttgtaat gcagttattt
      541 ctcaatatcg taaatttaat aatgaaactc cttctcctag taaaactaat tctttcgctc
      601 aatcaaagtc atcagatgtc actaaatctg taaatgatat ttccgattca tcacctaaaa
      661 ataaaagtga atctgaaaaa tctatactac cctctaatac ttatgaagaa aatacttctg
      721 attcaataca atctgagagt atagatacaa aatctagtaa tataactatc gctaaaggaa
      781 aatattttcc tattcagtca attattggaa tgccagttta tgatcaggaa gctatgctag
      841 tcggaaatgt tcaagaaata ggacttagaa aatcgcttaa cggtataata caaattacat
      901 taaaaattga taatcgcgat aagacatctg aaactaatgg caatgaatta tataatgaaa
      961 ttacttggtc taatatttct aaaattggag atattgtttt aataagtggc gaacaaaaga
     1021 aaatacaatc atctaatact tctcctatag ataaaaaaat atgtattaca tgccaatacc
     1081 ataatgaatc agatgctctt tattgtgaac aatgcggtaa aaaactagaa taatattttt
     1141 ttttattcca acttaattat tagctcgttt tatctttctg attttttaag cctattctaa
     1201 catctactgc tcttacacca ttaccttttt ctaatacaag taatggattc atatcaaatt
     1261 cttcaatttc tggaaaatca gtaactaatt gtgatagtcg ttgaatactt tctactattc
     1321 catctatatc tgattccttt tctcctctta ctccttttaa tagtttgata gtttttatag
     1381 attctaccat ttcttttgct tgttgttcat ctattggagc tatcctaaat atgacatctt
     1441 ttagaacttc tacatatatt ccacccaaac caaacattat taatggccca aataagggat
     1501 ctctttttgc acctaaaatt gtctcttttg aagaaccaat catttcttga actaaaattc
     1561 ctttgatctc tgcgtctgat ttgtattttt ttacatttaa taatatttca ttatatgctt
     1621 ttatagcttc ttgttgattg ttaattccaa tcttaacacc tccagcatcg gatttatgaa
     1681 tgatctgtgg agaaacaatt ttcataacta ctggataacc tatttcttcg gctgcttttg
     1741 ccgactcttc ttcatttgta gccagaaatt tttttggagt tgaaaatcca tatgctttta
     1801 atatttcata accttcttct tcaagcaaat taattctgtt agattttgtc acattctcta
     1861 aaacatctct tgcttttgtc ttatctacct caaatttttt tggaggagta tcttcttttt
     1921 caatccatct acggtgtcta aacattgctt ctaatgttct tattgctggt tctgcataca
     1981 taaaatgagg aattcctcca tctgaaagaa tttttttatt ttctattcct tccgctaatc
     2041 ccattaaggc cgccaacatt gtttttccag aatctttgga tgtttttatt attgtttgtg
     2101 ctaattcatt ataatctaat gttgcagaag gtgtacacat agtaacgact gcgctaacat
     2161 tagcattaga taagacttca tctagcactt tttcaaatcg attaaaatct gcatctccta
     2221 ctatatcaac agggtttcta gctgaaccat gaggaggtat gactttggct atttccgatt
     2281 ctgattgaga aatatctgcc atttttaatc catattttga acaagcatct gtagaaatga
     2341 tggctggtcc acctgcattt gatactatga ctactccacc atttgaaggc ggtattggtt
     2401 gtttctcaaa agctgtagat gtttcaaata attcttgcat ggtgtctact cttataactc
     2461 ctg
//
LOCUS       DATCMF010000305         1739 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_371165, whole genome shotgun sequence.
ACCESSION   DATCMF010000305 DATCMF010000000
VERSION     DATCMF010000305.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1739)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1739)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1739
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_371165"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1082)
                     /locus_tag="VIL14_03825"
     CDS             complement(<1..1082)
                     /locus_tag="VIL14_03825"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HEY8522868.1"
                     /translation="MLDDIKQQIIKDFPITMRKIYLNNGSIAPLSLSSIKSITDFLIK
                     YSEQGPDSHDLSDYMENLLEETRLRIKHLINCNAIEVSFTQSTTQGLNLVANGIDWKK
                     GDIIILRGGRHEHYANYFPWLYVAKRKKLKIKVLKIDSNGFFDIDELEKLAKLKKSKL
                     VILSHVLYNNGSIMPVEEVGKIARENNLLYCIDSAQSVGSINVDIKRIGCDFMAFPSF
                     KWICGPLGIGIFYCSEKSKDALIPDSIGGESGQIISDDSLVHNDIPQKFETGFRNYPA
                     LAGLESSLRYILRIGMHKIMSINSKTSSILRNELAKIDGIDIHGINDKNLRSSIVSFS
                     SPKIESNLLKVKLEKEGIIMAERDLL"
     gene            1124..>1739
                     /locus_tag="VIL14_03830"
     CDS             1124..>1739
                     /locus_tag="VIL14_03830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522869.1"
                     /translation="MHNILCNLLTIGGLNTLLFYNPYAKLCFTSTITSYFRKTTYLDF
                     DTTYTAYTKSNLIKNYPLNNISLFTPNEGELESLITNIVSNISNSSLLIIDSLNSFYN
                     LYYKKIDMESLKGISTIQHTLSNFLMILLKFCQSLRVPILVTNMMRYRKKEEWIKTPT
                     NKRFLQKKSAVMLFVELLSQNMLFLDIITHPTLLPTTLTLDNNNI"
BASE COUNT          599 a          272 c          197 g          671 t
ORIGIN      
        1 tttagtaaat ctcgttcagc cataataatt ccctcttttt caagttttac ctttaacaga
       61 ttagattcaa tttttggact agaaaaagaa actattgaac tacgcaagtt tttatcattt
      121 attccatgaa tatcaatacc atctatttta gctaactcat ttcgtaaaat tgatgaagtt
      181 ttcgaattta ttgacattat tttatgcatt cctattctta aaatatatct aagcgatgat
      241 tctaaacctg ctagtgcagg ataattacga aatcctgttt caaatttttg tggaatatca
      301 ttatgaacta aagaatcatc tgaaataatc tgtccagatt ctcctcctat gctatctgga
      361 attaaagcat ctttagattt ttcactacaa taaaatattc ctatccctaa tggaccacaa
      421 atccatttaa aactcgggaa tgccatgaaa tcacatccaa ttcttttaat gtctacattt
      481 atagaaccaa cagattgggc tgaatcaata caataaagta aattattttc tcttgcaatt
      541 tttccaactt cttctacagg cattatagaa ccattattat ataatacatg actaagaatt
      601 actaatttag atttttttaa tttagctaat ttctctaatt catctatgtc aaaaaatcca
      661 tttgaatcta tttttaaaac ttttattttt aattttttcc tcttagctac atataaccat
      721 gggaaatagt ttgcgtaatg ttcatgtctt ccacctctaa gaattattat gtctcctttt
      781 ttccaatcta taccatttgc aacaagattt agtccttgtg tagtgctttg tgtaaaactt
      841 acttctattg cattacaatt tatcaaatgc tttatcctta acctagtttc ttctagcaag
      901 ttttccatgt aatctgacaa atcgtgtgag tcagggcctt gttcggaata ttttatgaga
      961 aaatctgtaa tagattttat agaagaaaga gataatggag caattgaacc attatttaga
     1021 tagattttcc tcatagtaat tggaaaatcc ttaataattt gttgtttaat gtcatctaac
     1081 aatattatat tttatatatt caacatattt aattcatgta tagttgcaca atattttatg
     1141 taatctttta actattggtg gattaaacac attattattt tataatccct acgctaagct
     1201 ttgttttaca tcaacaatta cctcttattt tagaaaaaca acttatctag attttgatac
     1261 aacttatact gcatatacta aatcaaattt aataaaaaat tatcctctta ataatatatc
     1321 tttgtttaca ccaaatgaag gggaattgga gtcattaata accaatatag tttctaacat
     1381 ttcaaattct tcattattga taattgattc attaaacagt ttctataatt tatattataa
     1441 aaaaattgat atggaatcct taaaaggaat ttccactatt caacataccc tttcaaattt
     1501 tttaatgata ttattgaaat tctgtcaatc tttaagggta cctattctag ttactaatat
     1561 gatgcgatat agaaaaaagg aggaatggat caaaactcct acaaataaga gatttctaca
     1621 gaagaaaagt gcagtgatgt tatttgtaga attgctaagt caaaacatgt tatttctcga
     1681 tattataact catcctacgt tgttgcccac aactttaact ttggataata ataatataa
//
LOCUS       DATCMF010000306         1784 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_569198, whole genome shotgun sequence.
ACCESSION   DATCMF010000306 DATCMF010000000
VERSION     DATCMF010000306.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1784)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1784)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1784
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_569198"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..949
                     /locus_tag="VIL14_03835"
     CDS             <1..949
                     /locus_tag="VIL14_03835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HEY8522870.1"
                     /translation="SLIVMLLDELIQKGWGLGSGISLFIMAGVAQTILWSVFSPVAGP
                     DGPVGIIPFIIDSAATGDISDTFFRSGQLPSVFTFILTGGVLALLVYTQGIHIDIPIV
                     STKYRGFTAVYPIKLLYVSNIPVILSTALIANAMFMGQMLWANYNPQNDNPFFNWIAQ
                     FDPGQQQTPTGGLLYFLSTPRGLDIVAQDPIRAVTNIIFVTAIVTVFGRLWVELGGLS
                     AKAAAKNLLDADVQIPGFRRSQNSVQNVLDKYIPSVTIIGGVAIGLLASVSDVLGLFG
                     GGIGLLLMVDILVNYYNLLIREKVDTTMPKLAALIGRKD"
     gene            933..1517
                     /locus_tag="VIL14_03840"
     CDS             933..1517
                     /locus_tag="VIL14_03840"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: protein motif:HMM:NF003122.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HEY8522871.1"
                     /translation="MEEKTKRIIVVGIPGVGKTTVVSSVKNTLEQTGIKTNLAEFGKI
                     MLEEAKKLNITNRDEIRRLSIDDQKKLQNLAATKISQIYSDVVIIDTHLFINTKEGYY
                     PGLPADLLNNMKPTHLILIIANPEEIYHRRQNDSTRVRDIISMDSIKNEIDVSKMLIS
                     CCSIISGAPFKILANHEGSLTDCTQKMVSLILDT"
     gene            1534..>1784
                     /locus_tag="VIL14_03845"
     CDS             1534..>1784
                     /locus_tag="VIL14_03845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522872.1"
                     /translation="MYLGDLILQIPGLAPAYTKHPIFPDLFSAMIVAALISIGLNFAF
                     AILRKKTTDIDRLSKVMKETNEWRKEYTDAIRKQDKVRI"
BASE COUNT          582 a          281 c          345 g          576 t
ORIGIN      
        1 gagtcttatt gtaatgctat tagacgaatt aatccaaaaa ggctggggat taggatcagg
       61 tataagcttg tttattatgg ctggtgtggc tcaaacaatc ttatggagtg tatttagtcc
      121 tgttgctgga cctgatggcc cggttggaat tatcccgttt attattgatt ctgcagctac
      181 tggagatatt tctgatactt tctttagaag tggtcagtta cccagtgtgt ttacctttat
      241 tttgactggc ggtgtcttgg cccttctagt atacacgcag ggaattcata ttgatattcc
      301 gattgtttca acaaagtata gaggctttac agcagtttat ccaataaaac ttctctatgt
      361 atctaatata cccgtcattt tatctaccgc tttgatcgcc aatgctatgt ttatgggtca
      421 aatgttatgg gcaaattata atccacaaaa tgacaatcca ttttttaact ggatagctca
      481 gtttgatcca ggacaacaac agactcctac cggcggattg ttatactttt tgagtactcc
      541 cagaggatta gatatagttg ctcaagatcc aatccgggct gtaacgaata ttatctttgt
      601 aacggctatt gttactgtat ttggtagact atgggtagaa ctgggaggac tttcagcaaa
      661 agctgctgcc aaaaatcttt tagatgcaga tgttcaaata ccaggtttta gaagatcaca
      721 aaattctgtt caaaacgttt tggataaata tattccatct gtaaccataa ttggtggtgt
      781 tgcaattgga ctattggcat ctgtttcgga tgtgcttggt ctttttggtg gtggtatagg
      841 attgttgtta atggtagata ttttagttaa ctactataat ttgttgatca gagaaaaggt
      901 tgatactact atgccaaaat tggcggcttt aattggaaga aaagactaaa cgtataattg
      961 tagttggtat accaggggta ggcaaaacta ctgttgtttc tagtgtgaaa aatacattag
     1021 aacaaacagg catcaaaact aatctggcag aatttggaaa gataatgtta gaggaggcaa
     1081 aaaaattgaa cattacaaat agagatgaaa tacgccgcct ttctattgat gaccagaaaa
     1141 aattacagaa cctagctgcc accaaaattt cacaaatata ttctgacgtg gtaataattg
     1201 atactcattt atttataaac actaaagaag gatactaccc cgggttaccg gcggatctat
     1261 taaacaatat gaaacccact catctgatat taataatcgc aaatccagag gaaatttatc
     1321 atagaagaca aaatgattct accagagtta gagatataat ttcgatggat tcgataaaaa
     1381 atgaaattga tgtttcaaaa atgctgattt cttgctgttc cataatctcg ggagcacctt
     1441 ttaaaattct tgcgaatcat gagggatctt tgacagactg tactcaaaaa atggtttcat
     1501 taatattgga cacatgaaag aaagacaaat aatatgtatt taggtgatct tattttacag
     1561 attcctggtc tcgctccagc atatactaaa catccaatct ttccggatct attttctgct
     1621 atgattgtag ctgctttaat atcaattggt ctaaattttg cgttcgcaat tttaagaaaa
     1681 aaaactactg acattgatag actatcaaaa gttatgaaag aaacaaatga atggagaaaa
     1741 gaatatactg atgctataag aaaacaggat aaagttagaa ttag
//
LOCUS       DATCMF010000307         1837 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_304165, whole genome shotgun sequence.
ACCESSION   DATCMF010000307 DATCMF010000000
VERSION     DATCMF010000307.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1837)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1837)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1837
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_304165"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..248
                     /locus_tag="VIL14_03850"
     CDS             <1..248
                     /locus_tag="VIL14_03850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522873.1"
                     /translation="NNMYSKIYSIVISSILAFAVIAGIPKAFENITAQEDGTGITQGE
                     DMNGINQSQGNESGMVQDQSNMAKNDGNNEEEEGDDE"
     gene            584..817
                     /locus_tag="VIL14_03855"
     CDS             584..817
                     /locus_tag="VIL14_03855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522874.1"
                     /translation="MSTDPPVYNWDRIVLKPVRSKDNQDVGNVISIGNDSFTVHSGRY
                     EFIISKNDVEGFNGGEVSLNKNYAELFKNKMKP"
     gene            complement(950..>1837)
                     /locus_tag="VIL14_03860"
     CDS             complement(950..>1837)
                     /locus_tag="VIL14_03860"
                     /inference="COORDINATES: protein motif:HMM:NF024896.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEY8522875.1"
                     /translation="PKPEGWTGKNWACYQGYTKSSGQLFLFTDADTTHSSSTISLAVN
                     HLLSKDLDALTAIPKILANDFWTKITLPILWTLSVSRYSALKANDPKTNVGYFFGSFF
                     IITKKAYEAVGTHRAVKEEIVEDGALGRKVKEQYFKLRVVHGEDHIHAVWARNSSTLW
                     HGLRRLMIPLYKKEKIKAFMMVVATFFLLIYSLIVLPFLITIALDEKDVTVIISNYSL
                     DLMLLFLTVMSILLLIITNVLQLKYAVFQNCLYSLYFPLAGSFIFIAFLSSIINSGKH
                     DVIKWRGRRYSIYEIKYKQ"
BASE COUNT          702 a          253 c          291 g          591 t
ORIGIN      
        1 aaaataatat gtattcaaaa atatattcaa tagtaatttc atctattctt gcatttgctg
       61 taattgcagg aataccaaaa gcatttgaaa atataacagc acaagaagat ggcaccggta
      121 tcactcaagg tgaagatatg aatggaatta accaaagtca aggaaatgag agtggaatgg
      181 ttcaagatca atctaatatg gcaaagaatg atggaaataa cgaagaggaa gaaggcgatg
      241 atgaatgaat aggatgttaa acaattagta aacattcttt accctttgtt tggttatata
      301 tggaaattat tttaaaaata aaacaaatga taaaagtaga aaactgaaaa atagaaacta
      361 tccataaatg ttatggagaa aaaaagatct attattgtaa tcaagtgttc aatcttatta
      421 cctaaaattt tagtcataac gagactggct atgtatagat ccttgactaa atcataaaac
      481 cttaaaatga gagcaagagg taatagcttg aaataaataa ataaatagtt gaaaaacaat
      541 aagattttaa aacttaaata attcttctgc gtataatata ttaatgtcta ctgatccccc
      601 agtatacaat tgggatagga tagtactcaa acctgtacgt tcaaaagata atcaagatgt
      661 tggaaacgtc atttcaatag gaaatgatag ttttacagtt cattcaggtc ggtatgagtt
      721 tattatatca aaaaatgatg tagaaggatt taatggagga gaagtatctt tgaataaaaa
      781 ctatgcagaa ttgttcaaga ataaaatgaa accttaattt ttttagaact agagatataa
      841 attaaaagtg aataatcgtc attcttgttt tttatatatc taaaacaata cagaattaga
      901 tcctaaaatc aaagtaatct taattctaag taactcactg acaagatgcc tattgtttat
      961 attttatttc ataaattgag tatcttctac cccgccattt tataacatcg tgttttcctg
     1021 aatttataat tgatgaaaga aatgcgataa atatgaacga accagctaaa ggaaaatata
     1081 atgaatataa acaattttga aatactgcat actttaactg taaaacatta gttattatta
     1141 ataatagaat tgacataaca gttagaaata acagcattag atctaatgaa taattactta
     1201 taatcacggt tacatctttt tcatctaatg caatggtaat taaaaatggc aatacaatta
     1261 aagaatatat cagtaaaaaa aatgttgcaa caaccatcat aaatgctttt attttctcct
     1321 ttttataaag gggaatcata agcctacgta gtccatgcca tagagtagaa gaatttcttg
     1381 cccatacggc atgtatatga tcctcaccgt gaactactct aagtttaaag tattgttctt
     1441 tgacttttct tcctaatgcc ccatcctcta caatttcttc ttttactgcc ctatgggttc
     1501 caactgcttc atatgctttc tttgttatta taaagaaact tccaaagaaa tatcctacat
     1561 tagttttggg atcatttgct tttaatgcag agtatctaga tactgaaaga gtccaaagta
     1621 taggtaaggt aatctttgtc caaaaatcat ttgctaatat tttagggatt gcagtgagcg
     1681 catcgaggtc tttagatagt aaatgattta ccgctaaaga gatagttgag gaagaatgag
     1741 tagtatcggc atcagtaaaa aggaaaagtt gacctgatga tttagtgtat ccttgataac
     1801 aagcccaatt ctttccggtc caaccttctg gctttgg
//
LOCUS       DATCMF010000308         2742 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_569357, whole genome shotgun sequence.
ACCESSION   DATCMF010000308 DATCMF010000000
VERSION     DATCMF010000308.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2742)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2742)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2742
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_569357"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(166..1497)
                     /locus_tag="VIL14_03865"
     CDS             complement(166..1497)
                     /locus_tag="VIL14_03865"
                     /inference="COORDINATES: protein motif:HMM:NF037020.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redoxin family protein"
                     /protein_id="HEY8522876.1"
                     /translation="MNRDNISALVLTIMALYVIIFGFTIYFNNPPGLNQAWSIQQKDK
                     DMLVLGLHSPEFTFEKNYTNVKTAVQRFGITNPAVADTTIENHTVTMKINATQFQHID
                     KSQFKKAPEFVQISGYINTPNNNPLTLSSLKGKVVLVYIWTYTCINSIRPMPYIDDWN
                     QKYSNNGLVIVGLHSPEFTFEKNYTNVKDAVQRFGISYPVILDSDHGTWDAYGNQYWP
                     RFYLIDTQGNIRYDHIGEGSYDQIEKAIQSLLAERAALMGAKEISFNTKPTTVIKPGS
                     LQYVDLRQSTTPEIYIGYEKARAPIGNPEGFKPDQTISYSIPSSNTNFKPHIVYLQGN
                     WKNNPDNMQLQSDTGRIVLTYYAKSVNIIAGGKGEGVVFNDEGVEGAASVMSTSKISN
                     KSLGEDISPDGSFRIDGQRLYNLAIHDNYAAHYIVIDVKGKGFQFYTITFG"
     gene            complement(1862..>2742)
                     /locus_tag="VIL14_03870"
     CDS             complement(1862..>2742)
                     /locus_tag="VIL14_03870"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEY8522877.1"
                     /translation="NVTFSHHMASVNGIQLHYVTGGQGDPVVLLHGFPQSWYEWRHII
                     PALAKNYTVIAPDLRGFGDSSKPITGYDGKTTEEDIYQLISQLGFNKPIFLVAHDVGA
                     QTAYSYAFSHTNNVSKLVIMDFPYPGFLPAEFGENGPWWFAFHQTPNLPEFLVEGKER
                     EYISWFFKELAYNPSAITEEDIDIFANHFSAPGTARSAFEYFRAFPIDAEQNIESAKT
                     PITIPVLALGGDIYPGLGGDIPGNFAASSLQSLATNVTGVTVPLSGHWIPEERPDFVI
                     DQLSKFFGNRNDNASE"
BASE COUNT          832 a          493 c          464 g          953 t
ORIGIN      
        1 catacaattg ggaagaaatt aaggcaactg ttgaggttaa tttccctaat tacggtcatg
       61 cattaatatc tactaaagaa ttcattgata tttgttctaa gttataactt ggacctttgt
      121 agctaatccg agctgttgta tagtttaaca tactcctccc agtaattaac caaaagtaat
      181 ggtatagaat tgaaatcctt ttcctttaac atcaattaca atataatgag cagcgtagtt
      241 gtcatgtata gctaaattat atagtctttg tccgtcaatt ctgaaactac catcaggtga
      301 tatgtcttct cctagcgatt tgttcgatat ttttgatgtt gacatcacag atgctgctcc
      361 ttctactcct tcatcattaa aaacaactcc ttcacccttt cctcctgcta ttatatttac
      421 agattttgca taatatgtca acacaatgcg tccagtatca ctttgtaatt gcatattatc
      481 agggttgttt ttccaatttc cttgaagata tacaatgtga ggtttgaaat ttgtattaga
      541 tgatgggatt gagtatgaaa ttgtctgatc tggtttgaag ccttcagggt ttcctattgg
      601 ggctctcgct ttttcatagc ctatgtatat ttctggtgtt gtgctctgtc ttaaatctac
      661 atattgcaaa cttcctggtt taattactgt agtaggtttt gtattgaagc ttatctcttt
      721 tgcacccatt agagcagcac gttctgctag cagtgactga attgcttttt ctatttgatc
      781 ataactacct tcacctatgt gatcgtatct tatatttcct tgagtatcaa tcaagtaaaa
      841 cctaggccaa tactggtttc cataagcatc ccaagttcca tggtcactat ccagtattac
      901 aggataactt atcccaaatc tttggacagc atccttcaca ttggtataat tcttttcaaa
      961 cgtaaattcg ggtgaatgaa gaccaactat gactaaacca ttattagaat atttttgatt
     1021 ccaatcgtca atgtacggca taggacgaat cgagttaatg catgtgtatg tccaaatgta
     1081 tactaaaact acttttcctt taagagatga aagtgttagc ggattattat taggtgtatt
     1141 gatgtagcca cttatttgaa caaattcagg tgccttttta aattgtgact tgtcaatgtg
     1201 ctggaactga gttgcattga ttttcatagt tacagtatga ttttctatgg ttgtatctgc
     1261 tactgcagga ttagttatcc caaatctttg gacagcagtc ttcacattgg tataattctt
     1321 ttcaaacgta aattcaggtg aatgaagacc aagcacgagc atgtctttgt ctttttgttg
     1381 tattgaccaa gcctgattaa gaccaggagg gttgttgaaa tatattgtaa aaccaaagat
     1441 aataacatat agtgccatta ttgtcagcac taatgcacta atattatctc ggttcatcgt
     1501 ttaagttccg ctccattctt tctgtctttc atcacatgca tgtacatcgt ggcaaaagta
     1561 aataaggatt cttatttcca ttaaagcatt tttattttct ataagatgtg aaaatcacaa
     1621 ttgctagctt tggcttttgt tcttagttta ataaacgcaa taaagtacat cataaaggcc
     1681 caaatgcaaa tgaccctaat ccatcattta acaagtatat acaaagaatt taaacgaatt
     1741 attaaatgat aaaaaaataa gattgtaaat tagatgatgg aattatgaat catgtaattt
     1801 aaccaccact tttcaatatt tcacacttgt ttaatccata gtaaatatgt gtactctact
     1861 tttattcact tgcgttatca ttcctatttc caaagaattt tgaaagttgg tctattacga
     1921 aatctggacg ttcttcagga atccagtgtc ctgaaagtgg aacagtgact ccagttacat
     1981 tcgtagctaa tgattgtaac gagcttgctg caaagttgcc aggtatgtca ccacctaacc
     2041 ctggataaat gtcaccacct aatgctaata caggtattgt tatcggagtt ttggctgact
     2101 caatattttg ttctgcatca attggaaaag ctctaaaata ttcaaatgct gaacgtgctg
     2161 tgccaggagc tgaaaagtga tttgcaaata tatctatatc ttcttccgta attgcagatg
     2221 gattataggc caactcttta aagaaccatg atatatattc tcgttcttta ccttctacta
     2281 gaaattcagg caagttaggt gtctgatgaa aagcaaacca ccaaggtcca ttctcaccaa
     2341 attcggcagg tagaaaacct ggatatggga agtccatgat tactaatttt gatacattgt
     2401 tagtatgaga gaaagcatat gagtaagctg tctgtgctcc tacatcatgt gctactagaa
     2461 aaattggttt attaaaacct aattgagata ttaattgata gatatcttct tcagtagttt
     2521 taccgtcata acctgttatc ggttttgaag agtctccaaa tcctctaaga tcaggcgcaa
     2581 taacagtata atttttggcc aaagctggaa ttatatgtct ccattcatac catgattgcg
     2641 gaaatccatg caacaagact acagggtctc cttgaccacc tgtaacataa tggagttgaa
     2701 taccattcac agatgccata tgatgtgaaa aggtcacatt at
//
LOCUS       DATCMF010000309         1543 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_436669, whole genome shotgun sequence.
ACCESSION   DATCMF010000309 DATCMF010000000
VERSION     DATCMF010000309.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1543)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1543)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1543
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_436669"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..739
                     /locus_tag="VIL14_03875"
     CDS             <1..739
                     /locus_tag="VIL14_03875"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEY8522878.1"
                     /translation="MPSLAKNYTVIAPDLRGLGDSSKPLTGYDGKTVAEDIHQLVTQL
                     GFKTIFLVGHDIGTQVAYSYAAAHPTEVKKLVVMDLTIPGFEPAGMMPIWWRSFHETP
                     DVPEALVQGKEMMYLSWFYRNLAYNPSAITQTDINEFVSHYSSPGGMHSGFEYYRAFP
                     QDAIQNMNYSKTKLTMPVLALGAGYIPTFGGNITMPTIVYGMQILAQNATGIIVPNSG
                     HWIPEERPDFVLDQLSKFFKIGIMTMD"
     gene            977..>1543
                     /locus_tag="VIL14_03880"
     CDS             977..>1543
                     /locus_tag="VIL14_03880"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEY8522879.1"
                     /translation="MLLLLLFSSTSILITNISLFTSVYAQENQTETKNQIPEAAKGPA
                     IPSKGYLVEEIRDGLFWVTEGAYNTIFLVTDEGVVAVDAPPTIGKNYLKAISEVTDKP
                     ITHVIYSHAHIDHIGAAGMFPKNAVIIAQEETAEEFQRAKNISTNVSMVPPIPTETFS
                     NNYTLQIGNQTLQLDYYGNNHLPGNIFIY"
BASE COUNT          505 a          269 c          270 g          499 t
ORIGIN      
        1 tatgccatct ttagctaaga actatactgt tattgcgcct gatctgcgag gccttggaga
       61 ctcttcaaaa ccattaactg gttatgatgg taaaaccgta gctgaagata tacatcaact
      121 agttactcag ttaggattta aaacaatttt cctagttggt cacgatatcg gaacacaggt
      181 agcctactct tatgcagctg cacatcctac tgaagtaaag aagttagtcg taatggattt
      241 gacgattcct gggttcgaac ctgccggaat gatgccaata tggtggcgct cgttccatga
      301 aacacctgat gtacctgaag cccttgtaca aggaaaagag atgatgtatt tatcatggtt
      361 ctatcgtaac cttgcgtata atccatctgc aataactcaa acagatatca acgaatttgt
      421 tagtcattat tcttctccag gcggaatgca ttctggattt gagtattata gagctttccc
      481 acaggatgcg attcaaaata tgaattattc aaagaccaaa cttacaatgc ctgtactggc
      541 gctaggagcc ggatacattc caacgtttgg aggtaatatt actatgccta ctatagtgta
      601 tgggatgcag atattggctc aaaatgctac gggtattata gttccaaatt caggtcattg
      661 gattccagaa gagcggccag attttgtact agaccaatta tctaaattct ttaaaatagg
      721 aataatgaca atggattaat gttgaagtga gatttgttga cacatgttag aatcataatt
      781 atttaccatt cagtaatctt gactgaaaat cttaactttt ttgttctttt aataatgtgt
      841 ttatgtttct tctatatact atttgtatct taacggttta tatggtaaca agaatctggt
      901 aatgagattg taaaattaaa agttaaaata ctatgttttt tacatttagt caatgaaaat
      961 acagaggaat ccctctttgt tactattatt gttattttca tcgacgtcaa ttcttattac
     1021 taatatatca ttatttacat ctgtttatgc acaagaaaat caaacagaaa caaaaaatca
     1081 aatacctgaa gcagcaaaag gtcctgctat tccttcgaaa ggatatctag ttgaagaaat
     1141 ccgtgatggc ctattttggg taacagaagg tgcttataat acaatatttc tagtaacaga
     1201 cgaaggtgtt gtagcagttg atgctcctcc taccattggt aaaaattatc ttaaagctat
     1261 atcagaggtt actgacaaac ctattaccca tgtaatttac agtcatgccc atatagacca
     1321 tattggtgct gcaggaatgt ttccaaaaaa tgctgttatt atagctcaag aggaaactgc
     1381 tgaggaattc caaagagcta aaaatatatc tacaaatgtt tctatggttc caccaatacc
     1441 tactgaaact ttctcaaata attatacttt gcaaattgga aatcaaactc tgcaactaga
     1501 ttattatgga aataaccact tgcctggaaa catattcatc tat
//
LOCUS       DATCMF010000310         3309 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_653466, whole genome shotgun sequence.
ACCESSION   DATCMF010000310 DATCMF010000000
VERSION     DATCMF010000310.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3309)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3309)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3309
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_653466"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(166..411)
                     /locus_tag="VIL14_03885"
     CDS             complement(166..411)
                     /locus_tag="VIL14_03885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522880.1"
                     /translation="MTNKPTKNNTLPDRKSEKNKAKEVVQSSELEQIEELSIKIDTLV
                     ELLSDKGIINKKGYINNVMMRIHETSKAKSFDEYEEI"
     gene            533..883
                     /locus_tag="VIL14_03890"
     CDS             533..883
                     /locus_tag="VIL14_03890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522881.1"
                     /translation="MNTQNKSSTKNHTRNEKIYKIKIFNDSIKFYLPRVEGYNDIIKD
                     ITLKYGALSIFEFDGYFEGKFEPTKYIRVEIHTNDVNTEKMIEFANEVRIKLKQQSLA
                     FEFNNNLILVESDN"
     gene            complement(940..1428)
                     /locus_tag="VIL14_03895"
     CDS             complement(940..1428)
                     /locus_tag="VIL14_03895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522882.1"
                     /translation="MFIINVKSNSTILNDILKLEKRSSIKLNYFEKILLMNNGTTELF
                     LQILSNSLTKIVIIQQIEKNNIITRKINIITKDRGKILAEANSIIYLKNLPNKIKYEI
                     RKGEKGIGMIILENKLETYKRITEIGYNSKESYIYRKYKLLSGKHIISKVIENFSLGI
                     YD"
     gene            complement(1455..2192)
                     /locus_tag="VIL14_03900"
     CDS             complement(1455..2192)
                     /locus_tag="VIL14_03900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522883.1"
                     /translation="MKDNNSKSIRINEWFVPRFGPLKFRAFIGMLFLPYTGMCISFTI
                     IGSMLSESIAWDRALSIFIIYFLGLGVSAHAADNLGSKKIKPWGNFFSTLELRLMVMG
                     GLSVSYLLGFYYIITFTPLLLIIAIIEGFFLFAYNFELFNGFFHNNFWFAISWGSLPL
                     LAGFVIQTNSISILSLIASIIAFLVAYVEIRISRKYKELKRKQHDIVDCNTNKLERSL
                     KILSLITISFAVLLTVCRYIIEQYNIF"
     gene            complement(2189..2866)
                     /locus_tag="VIL14_03905"
     CDS             complement(2189..2866)
                     /locus_tag="VIL14_03905"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY8522884.1"
                     /translation="MINDVQSIAKSFFSNRNAASYDRIVKYTTFGKDSLWKQNIAKYI
                     TPEHKYILDVACGTGIFSSFISNIPYKDLIGVDLTYSYISNAKAKKGYSLLVNSMAEL
                     LPFKSESFDCIVSCYLAKYAKISLMVDEIWRLLKKGGLVIFSDFVYPLNKIMRLLWNS
                     YFNILKLAGQIIKPWKYVFYNLDEVIKRSTWTNDLKIALEKKGFQSLDVKYYTGGTSA
                     IISAFKI"
BASE COUNT         1255 a          451 c          374 g         1229 t
ORIGIN      
        1 gaggagatta attaccagta ttaactaata cattatatat aaaaaattga tctacaatta
       61 gataatgatt tttcaactat agcaaaaata aagaaaaaca aaaaaacata aagtagtaac
      121 aaatagatac aataagttaa ataacaaata agattgcttt tatatttata tttcttcata
      181 ctcatcaaaa gattttgcct tagatgtttc atgtattcgc atcatgacat tgttgatata
      241 acctttttta tttatgattc ctttatcaga taacaattct actaatgtat caattttaat
      301 acttaattct tctatttgtt ctaattcact tgattgtact acttctttgg ctttattttt
      361 ctcactttta cgatcgggta atgtgttatt ttttgtaggt ttattcgtca aaatatatct
      421 tatcttataa taattgagta tttaagcact attttattat aatctaaatt actataactt
      481 ttctataaaa aatacttaat aaatatacta accagatatt tatagcatct tcatgaatac
      541 acagaataag tcatcaacaa aaaatcatac tagaaatgaa aaaatttata aaataaaaat
      601 ctttaatgat tcaataaaat tttatctacc tagagttgaa ggttataatg acataatcaa
      661 agatataaca ttaaaatatg gagccttgtc aatttttgag tttgatggtt attttgaggg
      721 aaaatttgaa cccactaaat atatacgagt agaaatacat actaacgatg taaatacaga
      781 aaagatgatt gaatttgcta atgaggtaag aattaagtta aaacaacaga gccttgcatt
      841 tgaatttaat aataatctta tattagttga atcagacaat taacagatta aatctattag
      901 tataattttt gaactcttta catatacatg tctaatcatt taatcatata tccctagtga
      961 aaaattttca atcactttac ttataatatg ttttcctgat aataacttat attttctata
     1021 aatataagat tcttttgagt tataaccaat ttccgtaatt cttttgtagg tttctaattt
     1081 attttccaag ataatcatac ctatcccctt ttcacctttt cttatttcat atttgatttt
     1141 attgggaagg tttttcaaat agatgataga gtttgcctct gcaagaattt ttcctcgatc
     1201 ttttgtgatt atatttattt tccttgttat aatattattt ttttcaattt gttgtataat
     1261 tactatctta gttaatgaat tagatagaat ttgtaagaat agttctgttg taccattatt
     1321 cattaaaaga atcttttcaa aataatttaa cttaatacta ctcctctttt cgagttttaa
     1381 aatatcattt aaaatagtag aattagattt aacattaata atgaacatat acgtttaatt
     1441 aattaatatt aaacctaaaa tatattatat tgttcaataa tatatctaca tacagtcagt
     1501 aatactgcaa atgatatagt tattaaactc aaaattttta gtgaacgttc taatttgttt
     1561 gtattacaat caacaatatc gtgctgtttt ctttttagtt ctttatattt tctagaaatt
     1621 cttatttcta catatgcgac caaaaatgcg ataatagatg caattaagga taatatagaa
     1681 atagaattag tttgaataac aaatcctgct agtaaaggga ggctacccca tgatatcgca
     1741 aaccaaaaat tattatgaaa gaatccgtta aataattcaa agttataagc aaataaaaaa
     1801 aagccttcta taattgcaat aattaataac aatggagtaa atgtaataat ataataaaaa
     1861 cccagtaaat aggacacaga aagtcccccc attaccatca atctcaattc caaggtggaa
     1921 aaaaaattac cccaaggttt aatttttttg gaacctaggt tatctgcagc gtgagctgaa
     1981 acaccaagac ctaaaaaata aataataaag atggatagag ctctatccca ggctatagat
     2041 tctgaaagca ttgatcctat tattgtaaaa gagatacaca ttccagtata tggaagaaat
     2101 agcattccaa taaaagccct gaatttcaat ggcccaaatc ttggaacgaa ccattcgttt
     2161 atacgaatag atttagagtt attgtccttc atattttaaa agcagaaatt attgcagaag
     2221 ttccgcctgt ataatattta acatccaaag attgaaaccc tttcttttct aatgctattt
     2281 tgagatcgtt agtccatgta ctccgtttta taacttcatc taaattataa aatacgtatt
     2341 tccagggttt aataatttgg ccagccaatt ttagaatatt aaaataggaa ttccatagaa
     2401 gtctcattat tttattcaat ggatatacaa aatcactgaa aataactaat ccaccttttt
     2461 tgagtagacg ccatatttca tcaaccataa gagaaatttt tgcgtattta gccaaataac
     2521 aagatactat acaatcaaaa ctttctgatt taaatggtaa taactctgcc atggaattaa
     2581 ccaaaagtga atatcctttt tttgctttag cattagatat ataactatat gttaaatcaa
     2641 ccccaataag gtctttgtat ggtatattag aaatgaagga cgaaaaaatt cctgtcccac
     2701 atgcaacatc tagtatatat ttatgttctg gagttatata tttagcgata ttttgtttcc
     2761 acaatgaatc ttttccaaat gtagtatatt ttactattcg atcatagcta gctgcatttc
     2821 gattagaaaa aaaacttttt gcgatagatt gcacatcgtt aatcaatgtt ggttcactac
     2881 tatattcgct tatattataa ttgacttata taaaaatatt caagctttga aaaattctaa
     2941 tttaataatt tctatttatg ataaattttc atttttatac aatcacaaaa aatcattctg
     3001 ttaagttatt ataaactttt atatgttgta tataaatatt ttcactagaa aattatttat
     3061 ttaaaattga catccttagt ataataatat aaataaaata cctatttaac aacattacct
     3121 ctaaatcagt tataaaattt aaaactagta aaaaaattat atggagaata tcaattataa
     3181 taacatacta ttttcaaatt taatagaata aattggttat tataggtaca taaatcttta
     3241 actctatact aatatcggat aaaatttatt gatgcaaaaa ctacaaataa gctcggagcg
     3301 cctgagctt
//
LOCUS       DATCMF010000311         1602 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_569534, whole genome shotgun sequence.
ACCESSION   DATCMF010000311 DATCMF010000000
VERSION     DATCMF010000311.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1602)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1602)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1602
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_569534"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            861..1037
                     /locus_tag="VIL14_03910"
     CDS             861..1037
                     /locus_tag="VIL14_03910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522885.1"
                     /translation="MPYRIKISNGIEEIEMESDHISDLDTMIKKVEQLKQLLREKPSI
                     DSPPTEEEPYLGKS"
BASE COUNT          596 a          209 c          211 g          586 t
ORIGIN      
        1 gagtaatgtt tgataaatat tttgttctaa tttttataat aatattgaac cattcaaatt
       61 ttttacgtaa aatggcaaaa tatagtgatc ttttgttatt ctcttgataa taatattata
      121 gaggatagat tttaatagga agtaatatct aatgtgagaa ttgagtctag aaacgataaa
      181 taaataattt gacgttaaaa taaaagactt tttcaaaaga ccttcaattt gttgatgtta
      241 ccatatccca atggttggac caccatcttt taagggtata gtcgttaatg taaaagaggt
      301 attggtgagg gtgcccttat gggtaaagaa tcagttaata tctgcattat atttaataaa
      361 acttcaaact aattgtttta tctttatctc caactatact ttctataatt tatcatttta
      421 gagaaagatc cctaactctg ttaaggataa catttctctt ttcgacttat cgatcaaccg
      481 tacactctgc caaatcataa gaaaaacttc ttgatcaaag atgaaggtaa atcttgtgca
      541 ttgtactaat aacatttttt ataccgaaat tacataagaa atagagaata tagttctttt
      601 ttaatctggt ttctatcttt aggtttaaga tttatttatt accttctcaa aaactacgtg
      661 ctcgggtaga agtgggccta ttgttaggta ttgcagattt tcaccagatt aagatatttt
      721 ttgatttaag ctctaatcaa ctataaagaa taatctgttt caatgtttgt tttgtttatt
      781 aaccagtacg aaatcctttt tttataagca atcccaatcc caaagataca ataactaatg
      841 tagttaagta attatcacgc atgccttata gaattaagat ttcaaatggg atagaagaaa
      901 ttgaaatgga atcagaccat atttctgatc tagatactat gattaagaaa gtagaacaat
      961 taaaacagtt gttgagggaa aaaccaagta ttgattcccc tccgacggaa gaagaacctt
     1021 accttggaaa atcgtaattc aattcacgag atctatgtat ttttaatttt tgatttagtt
     1081 tattactttt aataaaaaaa taacaaagac tcaaaaaaat gttgattaaa aatgttaaaa
     1141 tatttcaaaa ataagagaaa aagtatatat catgattact aggttttata ttgtacctct
     1201 tctattattt gaaatcaaat cacaatatgc ttgccaaaat gattcattaa atttgaatat
     1261 aaattgtctt tatcttaata gatattttct gctatatatg atgaaaaata aatgtgtctg
     1321 ccaatgggca gcaatagata gtaaaaaata tcttatttca agcatgatat agaatgttat
     1381 ataactttaa tatcattaaa aacttatata gtatcccaat taattaacac ggaagatgaa
     1441 cgcagattaa tttccatttc aacacaacaa attttgatta cttatacagc ctcaatcgaa
     1501 ttttcttctg caattacttt ttcaatactt atttataata tttatgaatt taaattaaaa
     1561 ataaaagcct gtgtgatata aatatactat ctaaatcatt at
//
LOCUS       DATCMF010000312         2149 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_503568, whole genome shotgun sequence.
ACCESSION   DATCMF010000312 DATCMF010000000
VERSION     DATCMF010000312.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2149)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2149)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2149
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_503568"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            281..1831
                     /locus_tag="VIL14_03915"
     CDS             281..1831
                     /locus_tag="VIL14_03915"
                     /inference="COORDINATES: protein motif:HMM:NF014910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEY8522886.1"
                     /translation="MHQQKIDDDLRSIAKGDVLSDDWSKKIYSVDASEFEILPSTIIQ
                     VKDKEDISNICKYAYYNHLAITGRGAGTGLLGQSLSTGISLDFTKYMNKINELENDYV
                     MVQPGIVKAVLDKELKKKGKFLPPDPASSNFCTIGGMIANNSSGIHALGYGNTIDFLD
                     GIEIIYSNGFIEPLFKKAYSIHDSAKKESHSLRTNKINQLFRLFSSDLLKYISLKFPK
                     VTKNSCGYRIDTIIDNSKRYLPHKIFASSEGTLGITTLAKFRILDLPLYKTVMVIGFE
                     NILKAVKTVPTILSFFPTSLELLDDSVLCYEKIVKNKLNFKVNSNNNAGTLLFVEFAG
                     DDIVKIELKIQLCKEKLFGYGEILEVTSDNVSCERIWAARKNALNNVMKLTVGSRKPI
                     SLIEDTIVNPEYLYDYTLFLLKIYKKYKLDYIFYGHAGNGNLHTRPVIDTASSKYKDL
                     IASLATDVFSKVYELSGSITAEHGDGISRTKYIPQMYGNTIFEIFKNIKFIFDPTNIM
                     NPGKKVIQ"
     gene            complement(1962..>2149)
                     /locus_tag="VIL14_03920"
     CDS             complement(1962..>2149)
                     /locus_tag="VIL14_03920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522887.1"
                     /translation="DKDTIIISGKFIVNEVVVLIITQNYILLPNGKRLMHSKVTSNNN
                     SVIITENGIILKTNQMV"
BASE COUNT          798 a          282 c          329 g          740 t
ORIGIN      
        1 aaatcatgaa atatacgtag gtttatcaat caagcaaaat tccattgttg gaggtaatgt
       61 agaattacaa ttaggacatt tgactgaatc tatttcttgg gaatatgttt tacaaatcac
      121 ataatctttg caaacaagac aatatcttat cgacctaaaa caatattcca tattatacta
      181 tagttaaagt aattattaaa tatgtctact ttaatgattt tattatagat attttttata
      241 ttatataaaa actttatagt tatctctctc ttatttcttt atgcatcaac aaaaaattga
      301 tgacgatctg cgaagcatcg cgaaaggaga tgttctctca gatgactgga gtaaaaaaat
      361 ttattctgtt gatgcgagtg agtttgagat tcttcccagt acaattatac aagtcaagga
      421 taaagaagat atttccaata tctgcaaata tgcttattat aaccatttag ctattactgg
      481 ccgaggagca ggcactggac tcttaggaca gtcgttaagc actggtattt ctcttgactt
      541 tacgaaatat atgaataaaa taaatgaact tgaaaatgat tatgtaatgg ttcaaccggg
      601 aattgtcaag gcagtattgg acaaagaatt aaaaaagaaa ggtaaatttc tccctcctga
      661 tcctgcaagc agtaattttt gtacaatagg aggtatgata gcaaataatt ctagtggaat
      721 ccatgcattg ggatatggaa atacaattga ttttctagac ggtatagaaa ttatatattc
      781 gaatggattt atagagcctt tatttaaaaa agcttattct atacatgatt cagcaaaaaa
      841 agaaagtcat tctcttagaa caaacaaaat caatcaatta ttcagattat tttcgtctga
      901 tcttttaaaa tatatttctt taaaatttcc caaggtaaca aaaaattctt gtgggtatcg
      961 aatcgatact ataattgata atagtaaaag atatttacct cataaaatat tcgcatcttc
     1021 tgaaggtact ttagggataa caactttagc taaatttcga atccttgatt tgccacttta
     1081 taaaactgta atggttatag gattcgaaaa cattctaaaa gcagttaaga cagtcccaac
     1141 aattctaagt ttctttccta catctttgga attacttgat gattctgtat tatgttatga
     1201 aaaaatagtg aagaataaat taaattttaa agttaatagt aacaataatg cgggaactct
     1261 cctttttgta gaatttgctg gagatgacat tgttaaaata gaattaaaaa tacaattatg
     1321 taaagaaaaa ttatttggtt atggagaaat attagaagtg acatcggata atgttagttg
     1381 tgaaagaatt tgggcagcaa gaaaaaatgc tttgaataat gtgatgaaat tgacagtcgg
     1441 aagtcgaaag cctattagtt tgatcgaaga tactatagtc aatcctgaat atctctatga
     1501 ctatacatta tttctgttaa agatatacaa aaagtacaaa ttggattata tattttatgg
     1561 acacgctggc aatggaaact tacatactag accggtgatc gataccgcat caagtaaata
     1621 caaagacttg atagcttcac ttgcaacaga tgtcttttct aaagtttatg aattatcggg
     1681 aagtatcacg gcggaacatg gtgatggtat aagtagaaca aagtatatac cacaaatgta
     1741 tgggaacacg atatttgaga tatttaaaaa cattaaattc attttcgatc ctacaaatat
     1801 aatgaatcca ggaaaaaaag ttatacaata aattttatag tttaacatat gtcggatcaa
     1861 atctaggtta aattataaaa attaatttac cataataaac aaaattagaa agttataata
     1921 atgtttatta gcaaaatatt ctatttcttg atgttttgtc gttataccat ctgattagtt
     1981 tttaatatta ttccattctc agttatgata actgaattat tatttgatgt aactttacta
     2041 tgcattagtc tcttcccatt aggtagcaaa atataatttt gtgtaattat taatactact
     2101 acttcattta ctataaattt gccactaata ataattgtgt ctttatcga
//
LOCUS       DATCMF010000313         4309 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_304674, whole genome shotgun sequence.
ACCESSION   DATCMF010000313 DATCMF010000000
VERSION     DATCMF010000313.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4309)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4309)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4309
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_304674"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..358)
                     /locus_tag="VIL14_03925"
     CDS             complement(<1..358)
                     /locus_tag="VIL14_03925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522888.1"
                     /translation="MTEKINSLDNIVLTNITSKTNSNELLLSFNLGLKINGKIREFFT
                     QSLWEKAYNKFDNTFRITIKVDLKSKNKVIYSVKFVRKAVFFWTRNPKIQHRIWIFIV
                     KDDTPFYPESEEEAKSL"
     gene            371..694
                     /locus_tag="VIL14_03930"
     CDS             371..694
                     /locus_tag="VIL14_03930"
                     /inference="COORDINATES: protein motif:HMM:NF025040.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RpoL/Rpb11 RNA polymerase subunit family
                     protein"
                     /protein_id="HEY8522889.1"
                     /translation="MWYDLYPKYVLDYLMQAEITNYSSNEIELKLKEEDISIMYIIQH
                     HILKQKDIEFAGIVMKHPLIKEYLMRINSKANPMDVLEKSVKSADDFLKDFSHLLESA
                     QQKVV"
     gene            696..1025
                     /locus_tag="VIL14_03935"
     CDS             696..1025
                     /locus_tag="VIL14_03935"
                     /inference="COORDINATES: protein motif:HMM:TIGR01384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription factor S"
                     /protein_id="HEY8522890.1"
                     /translation="MKFCPNCETRMRLKFEENQVACPKCGFTSSEQKSAVTVNVGNIT
                     AQEQSALRILDGENTTQTLPTVNMDCPKCNNNLAVWWMLQTRSADEATTQFYRCTKCS
                     HTWRNYS"
     gene            1112..1864
                     /gene="pcn"
                     /locus_tag="VIL14_03940"
     CDS             1112..1864
                     /gene="pcn"
                     /locus_tag="VIL14_03940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030337 - DNA polymerase processivity
                     factor activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="proliferating cell nuclear antigen (pcna)"
                     /protein_id="HEY8522891.1"
                     /translation="MTLLAKTKTPDEWKAITSAISTLVDEATFEASVEGISFRGMDPS
                     HVALIDIYWPHASFEKYACDSLVKFGVRIDEFSKLIKRSEKKDSIELSINKESMLILK
                     IQNGYKKEYKMRLIESSSSSTPLPKLNFNSKIILTASAFDKILSDIQVLSEYITIDCK
                     SQSIRFLGRGDSGEADIFLEPKSEGLEELTSSEDSLGTYSIDYLIKITKAISAVGGSV
                     IAEYSSKMPLRLEFTVANLGRIHFYLAPRIQD"
     gene            1983..3371
                     /locus_tag="VIL14_03945"
     CDS             1983..3371
                     /locus_tag="VIL14_03945"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HEY8522892.1"
                     /translation="MKFGGSLLDDEQKIRNVINIIKSYYSLDFEIVVVASALYGITDK
                     ISTFCDEIKQINRNSLNLFLKNIEDIHINLVEKVIQDKNDKHKLLHLLKDLLNEFRDV
                     LLGISILKDVTPKSRDYLLSFGERLSTPIVSFALKSIGINSLFLNGKEVGILTDSNFG
                     DAKPLMDTTKLRVHHKIEPLLKEKIIPVVTGFIGFDQNGNTTTIGRGGSDYSATIIAA
                     SINANEVWLWGDVNGLMTADNKIVKDAVVLEEISFSEALELSMFGSKYMHPRALEPVM
                     DSKISVRIRNANNIDNSGTLITQVPTLPYNKTVKSITVIRNTALIDVSGGGLIGSLGT
                     AAKIFDALAKNQVNIMMISQTPSESSITIVVKKQDVDKAIMTLELNFLGKLIKRIDVS
                     ENVAVIAVVGSGMRGIKGVAAKTFGAVAKRNINVIMITQGSSELNLAFVIDDKNCEEA
                     VNVLHQEFINVK"
     gene            3417..4196
                     /gene="cobJ"
                     /locus_tag="VIL14_03950"
     CDS             3417..4196
                     /gene="cobJ"
                     /locus_tag="VIL14_03950"
                     /EC_number="2.1.1.131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030789 - precorrin-3B
                     C17-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="precorrin-3B C(17)-methyltransferase"
                     /protein_id="HEY8522893.1"
                     /translation="MSKGKLYVVGVGPGNHDHMTFRAKYVIEESEIIVGYDTYVSLVE
                     DLIQGKEIYRYAMTQEVDRANQAIEFAEEGKIVSLVSSGDPGIYGMIGLIYEILAEKG
                     WKKERGIYVECVPGVSSLNSCGALVGSPLMTDFAVVSMSDLLVPWEMIVKRVEAAAMG
                     DYVTVIYNPASKKRIHQLQDTRDILLKYRKPNTPVAIIKGAYRDSQEIVLTNLNDMLN
                     HSEIIGMITTIIIGNSSTYNYNNMMINPRGYKSKYQLVKEQ"
BASE COUNT         1562 a          603 c          767 g         1377 t
ORIGIN      
        1 acaaagactt tgcttcctct tcagattcag gataaaaagg agtatcatct ttaacgataa
       61 aaatccatat cctatgctga atttttggat tccttgtcca aaaaaaaaca gctttcctaa
      121 caaattttac tgagtatata actttgtttt ttgatttcaa gtctactttt attgttatcc
      181 gaaatgtgtt atcaaattta ttatatgctt tttcccataa ggattgtgta aagaattccc
      241 taattttacc atttattttt aaacctaaat taaacgaaag gaggagttca tttgaattag
      301 ttttactggt tatattggtt aaaacaatat tatctaatga attaattttt tcagtcactg
      361 attatttacc atgtggtatg atttatatcc taaatatgta cttgactatt taatgcaagc
      421 agaaattaca aactattcta gtaatgagat agaattaaag ttaaaagagg aagatatctc
      481 tattatgtac ataatacaac atcatatttt aaagcaaaaa gatatagaat tcgccggcat
      541 agtaatgaaa catccattga tcaaagaata tttaatgaga ataaatagca aagcaaatcc
      601 aatggatgtt ctggaaaagt ctgtcaaatc tgccgatgat tttttaaaag atttttcaca
      661 tttacttgaa tctgcccaac aaaaggtggt ctaaattgaa attctgtcca aattgtgaaa
      721 caagaatgcg attgaaattt gaagaaaatc aagttgcttg tcctaaatgt ggatttacta
      781 gttctgagca aaaatctgct gttacagtta atgttggtaa cataactgca caagaacaaa
      841 gtgctttgag aatattggat ggggaaaata caacacagac tcttcctaca gttaatatgg
      901 attgtccgaa atgcaataat aatttggcag tatggtggat gcttcagaca aggtcagctg
      961 acgaagctac tacccaattc taccgttgca cgaaatgtag ccacacatgg agaaactatt
     1021 cttaatactt tataagttat cgttcaaaag ttttgatgtt ttaatagtaa gatttaaaat
     1081 tgtctaacgg tagccagaac attgtattaa tttgacttta ctagctaaga caaaaactcc
     1141 agatgaatgg aaagcaatta cttctgcaat atctaccctt gttgatgaag caacttttga
     1201 agcatcagta gagggaatat cctttagagg aatggatcct tcacatgtag cattaattga
     1261 tatttattgg cctcatgctt catttgaaaa atatgcatgc gattcattgg ttaagtttgg
     1321 tgtcagaatc gatgaatttt caaaattaat taagcgatcc gaaaaaaaag attcaataga
     1381 attatctatt aacaaagaaa gtatgttgat tttaaaaata caaaatggat ataaaaaaga
     1441 atacaaaatg agattaatag aaagctcttc tagttccact cctctaccta agttaaattt
     1501 caattcgaaa ataatcttaa cagcttctgc atttgataaa atattatcag acattcaagt
     1561 actttcagaa tatatcacta ttgattgcaa atcgcagagt ataagatttt tggggagagg
     1621 tgattcaggt gaagctgata tatttttaga accaaaaagt gaaggtttag aggaattaac
     1681 atcaagtgaa gacagtctag gaacatatag tattgattat ttaatcaaga tcactaaggc
     1741 aataagtgca gttggagggt ctgtaattgc tgaatattct agtaaaatgc ctctaagatt
     1801 agaatttact gtcgccaatc tgggaagaat tcacttttac ctagctccac gtatccaaga
     1861 ctaataaaaa taatagtaaa aggataataa taataatttc atttctcttt tagttttata
     1921 ttgctattag cgaagcatta atctaggaaa acagactagt cttcagatat atgcgaattg
     1981 ttatgaaatt cggaggatca ttattggatg atgaacaaaa gatccgcaac gtaataaata
     2041 taattaaatc atattattct ttagactttg aaattgtagt tgtagcctca gcactatatg
     2101 gaattacaga caaaatctca acattctgtg atgaaattaa acaaattaat agaaattcac
     2161 taaatttatt ccttaaaaat attgaagata ttcatattaa tcttgttgaa aaagtgatac
     2221 aggataaaaa cgataaacat aagctattac atttgcttaa ggatttatta aacgaattca
     2281 gagatgtttt actcggcatt tctattttaa aagatgtaac tccaaaatcg agggattatc
     2341 ttctttcttt tggagaacga ttatcaactc cgatagtttc ttttgcttta aaatccatcg
     2401 gcataaattc tttattttta aatggaaagg aagtaggaat cttaactgac tctaactttg
     2461 gtgatgctaa gccattaatg gatacaacta aacttagagt ccatcacaaa atcgagccat
     2521 tattaaaaga aaagataatt ccggtagtta ctggtttcat cggtttcgat cagaatggta
     2581 atacaactac gattggaaga ggtggctctg actactcagc cactataatt gctgcaagta
     2641 taaatgccaa tgaagtttgg ctatggggag atgttaatgg attgatgaca gctgacaaca
     2701 aaattgttaa agacgctgta gttcttgaag agatttcatt ttcagaagcg ttagaattat
     2761 ccatgtttgg ttcaaagtat atgcatcccc gtgcactaga gcctgtcatg gattcgaaaa
     2821 tttcagtgag aataagaaat gcaaataata tcgataactc gggtacatta attactcaag
     2881 tgccgactct tccctataat aaaacggtta aatcaataac tgtgattaga aacacagcac
     2941 tgatagatgt aagtgggggc ggattaatag gttctcttgg gacggccgca aaaatttttg
     3001 atgctttagc aaagaatcag gtcaatatta tgatgatttc tcaaactcct tccgaatcta
     3061 gtatcaccat tgtagtaaaa aaacaagatg tcgataaagc tattatgact ctagagttaa
     3121 atttcttggg aaaattaatt aagagaatag atgttagcga gaatgttgcc gttattgcag
     3181 tagttggatc tgggatgaga ggaattaaag gagtagcagc gaaaaccttt ggagcagttg
     3241 ctaaaagaaa tattaatgta ataatgataa ctcaaggatc ttctgaactt aatcttgcat
     3301 ttgtcattga tgacaaaaat tgtgaggaag cagtaaatgt ccttcatcag gagtttataa
     3361 atgttaaatg atttatcagc aaaaagataa attttgtctt taatagtata tacaagttgt
     3421 caaaaggaaa attgtatgta gtaggtgttg ggccgggtaa tcatgatcat atgacgttta
     3481 gagcaaaata tgtaattgaa gagagtgaaa tcatagttgg atatgacaca tatgtttctc
     3541 ttgtagagga tctaatccaa ggaaaagaaa tataccgata tgcaatgaca caagaagtag
     3601 acagagctaa tcaagcaata gaatttgctg aagagggaaa aatagtttct ctagtttctt
     3661 ctggtgatcc aggcatttat ggaatgatag gtttaattta cgaaatttta gcagagaaag
     3721 gatggaagaa ggaacgtgga atatatgttg aatgtgtacc gggtgtttct tcattaaatt
     3781 cctgtggagc tttagttggt tctccattaa tgactgattt tgcagtagtt agtatgagtg
     3841 atctattggt accatgggaa atgatagtaa aaagagtgga agcagctgca atgggggatt
     3901 atgttactgt aatttacaat ccagcaagca aaaaaagaat tcatcaactc caagatacaa
     3961 gagatatcct attaaagtac agaaaaccaa atactcctgt tgcaataata aaaggagcat
     4021 atcgcgatag tcaagagata gttttaacaa atttaaatga catgttaaat catagtgaaa
     4081 ttatcggaat gataactact ataataatag gaaactcatc cacttataac tataacaata
     4141 tgatgatcaa tccaagggga tataaatcta aataccaatt agtaaaagaa cagtaaagta
     4201 tattggataa ttttcctccc cccacttact tacgtaggtg cttacactat tttacaataa
     4261 gggttcattg ttcttaaaat gatttctgat tggttctatt agtttgcac
//
LOCUS       DATCMF010000314         1543 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_503746, whole genome shotgun sequence.
ACCESSION   DATCMF010000314 DATCMF010000000
VERSION     DATCMF010000314.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1543)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1543)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1543
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_503746"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..275
                     /locus_tag="VIL14_03955"
     CDS             <1..275
                     /locus_tag="VIL14_03955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522894.1"
                     /translation="TKEFGKNPFTLNLASNSPNELHTGETSPTGTPKAEERDDDIYTK
                     ENKYMDNIKKRSLFLIYFWLLDLVYIVKEKILYKISDFFYKPTSFE"
     gene            complement(691..1380)
                     /locus_tag="VIL14_03960"
     CDS             complement(691..1380)
                     /locus_tag="VIL14_03960"
                     /inference="COORDINATES: protein motif:HMM:NF014068.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019172 - glyoxalase III activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 glutamine amidotransferase
                     domain-containing protein"
                     /protein_id="HEY8522895.1"
                     /translation="MNKKVLFVLTSHDQLGNTGQKTGFWLEEFASPYYEFIDNGYDVT
                     IASPKGGQPPMDPKSNLEEWQTDSTRRFQKDKSAQEKLANTLVLSQVSAKDYDTLFIP
                     GGHGPMWDLATDKNLKKLVEDFYFGGKFVSAVCHAPAGLLQATDKDGNSILKGKKVTG
                     FTDSEESAVHLEKVVPFLLEDRMKELGGKFEKAENFKPFVVTDGKLITGQNPASSFVA
                     AQKVIEMLGRN"
BASE COUNT          507 a          250 c          223 g          563 t
ORIGIN      
        1 caacaaagga atttggtaaa aatccattta cattaaactt ggcttcaaat tcccctaacg
       61 aactacatac aggggaaact tcacctacag gaacaccgaa ggcagaagaa agagatgatg
      121 acatatatac aaaggagaat aagtacatgg acaatatcaa aaagagatct ttatttctca
      181 tatatttttg gttattggat ttagtttata tagttaagga aaaaattctc tataagatat
      241 ctgacttttt ttacaaaccc acgtcttttg aataatagta tctctaggga aaaaggtaac
      301 cgatctccaa tgactggctg aacaatagac gaaattggtt ctgatttatc tatattcaaa
      361 gaatctggag tagatagagt aattcttggc gtgaatgcag gaaaagatta taatgtaaat
      421 gaaactatta aattttttaa ggaactgaaa aagttttgtc aatagttata aatgatgtaa
      481 atgatattat ttgttacttt atggtatatt ttttatagaa tttaagattg tattagtaga
      541 atgggatata gatttaacta atggatccat taagttactt atttgatgat cctattaaaa
      601 ttacccactt gttagggtag ttatcatctt atttagataa ctacttgagt tttgatccat
      661 attttcattc tgctagaaat aacaatcatc ttaatttctt cctaacattt ctattacttt
      721 ttgtgctgca acaaatgacg atgcaggatt ctgccctgta atcaactttc catcagttac
      781 aacaaagggt ttaaaatttt cagctttttc aaattttcca cctaattctt tcatacgatc
      841 ttctaacaaa aatggaacta ctttctctag atgtacagca ctttcttcac tgtctgtaaa
      901 tcctgttacc tttttacctt tcaatattga gtttccgtct ttatctgtag cctgtaataa
      961 tcctgctggg gcatgacata cggcactaac aaatttccca ccaaaataaa aatcttcaac
     1021 taattttttt aaatttttat ctgttgctaa atcccacatg ggtccatgac ctcctgggat
     1081 aaataatgta tcatagtcct tagctgacac ttggcttaat accaacgtat ttgctaactt
     1141 ttcttgagca gatttatctt tttgaaaacg tcgtgtagag tcagtctgcc attcttctag
     1201 attgctcttt ggatccattg gaggttgtcc accctttgga gaagcaattg tcacatcata
     1261 tccattatca ataaactcat agtagggaga agcaaattct tctaaccaaa atcctgtttt
     1321 ttgtccagta tttcctaatt gatcatgaga agtcaaaaca aaaagaactt ttttattcat
     1381 aaaattttat tctttttatt atatttaaga tttaaaataa aactttgttg tgtcattatt
     1441 ctgttagcta taacaattag gaaaattatt caagatttag aactaaatca agttttttgt
     1501 gagaattatg taatccttat ttcttccttc acttcactga ttg
//
LOCUS       DATCMF010000315         1536 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_569925, whole genome shotgun sequence.
ACCESSION   DATCMF010000315 DATCMF010000000
VERSION     DATCMF010000315.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1536)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1536)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1536
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_569925"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..872)
                     /locus_tag="VIL14_03965"
     CDS             complement(<1..872)
                     /locus_tag="VIL14_03965"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEY8522896.1"
                     /translation="MDHYDIAIVGGGPAGLSAAYTAAKTGVKVILFERDKAIGQYVRT
                     SGVSWISEMKKLEIPEKIYNPIKNYRFVSPKNEITIKGTEFRSCVLDVRSLYQYLSFL
                     AAKAGADISINSNVIDVFRSENNNRVSGLIVNTLKGKIEIRTSLVIDASGFNSFIGTK
                     LGYVSPWKRYGVGAEYECYCDKADPQTWTLMVGSNYSPAGYAWIFPLSQNRVRIGVGV
                     GKPESLIDPLKLLNQIIEKKFKPLGELGIIQPIEYHYGYIPNQGARNCSVFKGLILVG
                     DSAGQSNPLVLEGI"
     gene            985..1464
                     /gene="bcp"
                     /locus_tag="VIL14_03970"
     CDS             985..1464
                     /gene="bcp"
                     /locus_tag="VIL14_03970"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016209 - antioxidant activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-dependent thiol peroxidase"
                     /protein_id="HEY8522897.1"
                     /translation="MSQEFHIKEGAMAPDFTFKDSENKDQRLSNFLGKRIVIYFYPND
                     FTPGCTTQAYEFSTHFNKYLENNITIIGISPNDEITHHKFKEKMNIPFLLVSDTNNQI
                     SKKYGVYSLKKFMGKEFMGINRTTFLIDKYGKIVKIFYKVKPKGHSAEILNYFLRYN"
BASE COUNT          545 a          269 c          213 g          509 t
ORIGIN      
        1 ttaatccctt caagcaccag aggatttgac tgacctgcgg aatctcctac caaaatcaaa
       61 cctttgaata ctgaacaatt tcgtgctcct tgattaggaa tatatccata gtgatattct
      121 attggttgaa taattcccaa ttcgcccaga ggtttaaatt ttttttcaat tatttgattc
      181 aacaatttaa gaggatcaat aagagactct ggttttccaa ctcctactcc tatccgaaca
      241 cggttttgag ataaaggaaa tatccatgca taaccagcag gagaatagtt gctaccaacc
      301 attaaagtcc aagtttgagg atctgcttta tcacaataac attcgtattc cgcacccact
      361 ccataccttt tccaagggga tacatatcca agttttgtgc caataaaact attaaatcca
      421 cttgcatcta tgacaagact tgtcctaatc tcaattttcc ctttaagggt attgactatt
      481 aatccagaaa ccctattgtt attttcgcta cggaatacat cgataacatt tgaatttatg
      541 cttatgtccg caccagcctt agcagcaaga aaagaaagat attgatacaa tgacctaaca
      601 tctaaaacac aagatctaaa ttcggttcct ttaatagtta tttcattttt aggagaaaca
      661 aatctataat tctttattgg gttataaatt ttctcaggaa tttctaattt tttcatttca
      721 ctgatccaag aaacgccact agttcttaca tattgcccaa tagctttatc ccgttcaaaa
      781 agaataactt taactccagt ttttgctgca gtgtaagccg cagagagtcc agctggtcct
      841 ccgccaacta tggcaatatc ataatgatcc atttctatta cttcattctg tcaattgaat
      901 ttttattaac tttttcatat aaataaaata aatgaacagt tttaaagagc aaagtttttt
      961 atctgaaaaa agtgtaaaaa gatattgagt caagaatttc acataaaaga gggagcaatg
     1021 gctccagatt ttacatttaa agattctgag aataaagatc agaggttatc taatttttta
     1081 ggaaaacgta ttgttattta cttttatccg aacgatttca ctccaggatg taccacgcaa
     1141 gcatatgaat tttctactca cttcaacaaa tatttagaaa ataatataac aataataggt
     1201 attagtccta acgacgaaat aactcatcat aaattcaaag aaaaaatgaa tatcccattt
     1261 ttgttagttt cagatacaaa taaccaaata tctaaaaaat acggtgtata cagcctgaaa
     1321 aaatttatgg gcaaagagtt tatgggtata aatagaacaa cttttttaat agataaatat
     1381 ggcaaaattg ttaaaatctt ctataaagta aaaccaaagg ggcatagtgc agaaatatta
     1441 aattatttct taaggtataa ctaggacaat atgttgaaga atattcgttt tataaataat
     1501 agctgtttaa ttcttcatct atactttcta tattta
//
LOCUS       DATCMF010000316         2876 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_570072, whole genome shotgun sequence.
ACCESSION   DATCMF010000316 DATCMF010000000
VERSION     DATCMF010000316.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2876)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2876)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2876
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_570072"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            413..2545
                     /locus_tag="VIL14_03975"
     CDS             413..2545
                     /locus_tag="VIL14_03975"
                     /inference="COORDINATES: protein motif:HMM:NF013275.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEY8522898.1"
                     /translation="MAEPDSKIIYSNWVLIINSLVAAGLASYVFLKNRENIDENKENI
                     LLTIGLVFWFIANIIWAYYEVVLDIVSPVPSLADFFLLAAYVFLIYRLMIIRKKLSYI
                     IDKKIMYLMIVLTGLFLAYILNLTLDLAQTPNFRGIMLFIVTIAYPTLNSILTILAIT
                     ILLGIKKEKHHLVPWVCELIGFLAIVVGDSWFAIIVLTTFVEQLWISTLLLSAHYLLI
                     AGGLIWYLRYSIKWKSKDLAFKIVVRMKKRKPPNKIIFTSITVISLVLFSSVYLGNGF
                     ENDGKNSLLIKKNHITEKLSLTSTGGADGQQNFHKEFVVGAIIPLTGSYSSIGKPVKV
                     ALEKAEQDVNKYSEKMNSSSRFNLVMANSKSSPEDSLEAIKQLHSIGAKIIVGPATST
                     AVLGAKEYADTNDIILISYSSTSPLLSIPGDNLLRLVPDDINQGKVIAQRMIDDGIKV
                     VVPMWRGDIYGNELYKSTKYQFEKLGGKMEEGINYKPHTGKFATSLHRINFIMWNKDL
                     ERLDSIVSEAIKKYGNKSVGVFIISYDEITPILIQSSMYSSLGNIRWYGSDSIAQNHH
                     ITKNIDSALFAIKTNFSNPLYSIDTKSPKIHELSEILEKELHDGGSITYPAIAYDSFW
                     ISSLSLDTNSTNSSYLVDHKNRSKNSFKDIVVKTAESFDKGISGKIQLNDAGDRIGED
                     YDFWRISKDVQQSHYAWKTESNSGDSSH"
     gene            2687..2872
                     /locus_tag="VIL14_03980"
     CDS             2687..2872
                     /locus_tag="VIL14_03980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522899.1"
                     /translation="MEDKLKCVVHGRREGDKFILEGITNFIMKSLESNDGKIIIVTFE
                     LPVTTNEIKMDSCILIN"
BASE COUNT         1022 a          391 c          469 g          994 t
ORIGIN      
        1 aataacttaa tttaaaatag tcttttctaa cttttcaaat atcgtagtta tttacaaaga
       61 aggtggtttc agtgttcaat tgataataat atttctaaag atattatata atactagaaa
      121 attctaattt ccaaattttg ttgttgatat agttaagcat ttgtattgag acattttatt
      181 tatgtttata tgaagggtta gaactgaata aaaagtctct tttattaact aacagtaatt
      241 ttaaatttaa tttagtctaa caaactaact tcttaaattg attatacatc ttctaacaaa
      301 ataagattta taatcgatag tagaagttat aataaaaaag agagaattga tatcgctgta
      361 tttttttcta tgtgtcattt ttactatagc tgtaggaaat ttagttataa ttttggcaga
      421 gcctgacagt aaaataatat attctaactg ggttcttatt ataaattctc tggttgctgc
      481 aggactagca tcatatgttt ttttaaaaaa tagggagaat attgatgaga ataaagaaaa
      541 tattctttta acgataggac ttgtattttg gtttattgcc aatatcatat gggcatatta
      601 cgaagtagta ttagatattg tatctcctgt accgtctctt gcagattttt tcttgttagc
      661 tgcatacgtc tttttgattt acagattaat gataataaga aaaaaactca gttacattat
      721 tgataaaaaa attatgtatt tgatgatagt attaactggg ttattcttag catatatttt
      781 gaatctaacg ttggatctag ctcaaacacc caactttagg ggtataatgc tctttattgt
      841 cactattgct tatcctactt taaattcgat attgactatt ctcgccataa caattcttct
      901 tggtattaaa aaggagaaac atcatctagt cccatgggta tgtgagttaa taggtttctt
      961 agcaattgta gtaggagata gttggtttgc gataatagtt cttacaacat tcgtagaaca
     1021 actttggatt tctactttgt tactctctgc ccattattta ctaatagctg gtggtcttat
     1081 atggtattta cgatattcta ttaaatggaa atcaaaagac cttgccttta aaattgttgt
     1141 tagaatgaaa aagagaaaac ctcctaataa aatcattttt acttcaataa ctgttatttc
     1201 tcttgttttg ttttcatctg tttatcttgg caatggattt gaaaatgacg gaaaaaattc
     1261 gttgttaatt aagaagaacc atatcactga aaaattatca ctaacttcta ccggtggtgc
     1321 tgatggacag cagaatttcc ataaagaatt tgtagtggga gccattatac cattaactgg
     1381 ttcttattca tcaattggaa aaccagtaaa agtggctctg gaaaaagccg agcaggacgt
     1441 aaataaatat tctgaaaaaa tgaattcttc atcaaggttc aatcttgtta tggcaaactc
     1501 aaaatcaagc cccgaagatt ctcttgaggc aataaaacaa ttacattcca ttggagccaa
     1561 aattattgtt gggccagcta caagcactgc agttttaggt gcgaaagaat atgcagatac
     1621 taatgacatt atactaatta gctactctag tacttctcca ttactttcta taccaggaga
     1681 taaccttctc cgattggtac cagatgatat taatcaagga aaggttattg cacagcgaat
     1741 gattgatgat ggaataaaag tagttgtacc gatgtggaga ggcgatatct atggaaatga
     1801 actttacaaa tcgacaaaat atcaatttga aaaactaggt ggaaaaatgg aagaggggat
     1861 aaactataaa cctcatacag gtaaatttgc tacaagttta catagaatta atttcatcat
     1921 gtggaataaa gatttagaaa gattagatag tattgtatct gaggcaataa aaaaatatgg
     1981 caataaatct gtgggagttt ttataatatc ttatgatgaa ataacaccta tcttaattca
     2041 atcttctatg tattcttcac tcggcaacat cagatggtat ggcagtgata gtatcgctca
     2101 gaatcatcac attacaaaga atatagattc cgcactattt gcaattaaaa cgaatttttc
     2161 aaatccttta tattctatag atacaaaatc acctaaaatt catgagttaa gcgaaatttt
     2221 agaaaaggaa ttacacgatg gaggttctat cacctatcct gcaatagctt acgattcttt
     2281 ctggatttct tctttaagct tggatacaaa tagtaccaat agtagctatc ttgttgacca
     2341 taaaaatagg agtaagaact ctttcaaaga tattgtagtt aaaacagccg aatcttttga
     2401 taagggtatt tcaggaaaaa tacaacttaa tgatgccggg gatcggattg gtgaagatta
     2461 tgatttctgg cgcatttcta aagatgttca gcaaagtcat tatgcctgga aaacagaaag
     2521 taattcagga gattcaagtc attagaagag cattcaaaaa aagattcatt tatcgatgac
     2581 attatcttta actaaataga tacatttata ctaattacat attttgattt ttacattttg
     2641 ttcataaata taacaacaat cagacactat ctattagtac tcggttatgg aagataaatt
     2701 aaaatgtgtt gttcatggta gaagagaagg agataaattc attttagaag gaattacaaa
     2761 ttttataatg aaaagtttag aatccaatga tggtaaaatc ataatagtaa catttgaact
     2821 gcctgtcaca accaatgaga taaaaatgga tagttgtatt ctaatcaatt gattaa
//
LOCUS       DATCMF010000317         1823 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_570134, whole genome shotgun sequence.
ACCESSION   DATCMF010000317 DATCMF010000000
VERSION     DATCMF010000317.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1823)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1823)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1823
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_570134"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            600..1493
                     /locus_tag="VIL14_03985"
     CDS             600..1493
                     /locus_tag="VIL14_03985"
                     /inference="COORDINATES: protein motif:HMM:NF012703.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginase family protein"
                     /protein_id="HEY8522900.1"
                     /translation="MPSQFTIIDAPSILGLRPTGVEYLPEALKAAGLMERLNADYSGR
                     VSSLPYNSERDKITLLLNPDSIKTFSLHLADRVASVIRNMQYPLVLGGDCSIVIGNLL
                     ALRRLGRYGLFFIDGHADFYQPEASLTGEVADMDLAIVSGRGPEVLTNINNFKPLVRD
                     QDIILFGYREREQAASFGSQDVRNTDINSFDLSYVKELGITTAASMAVKKLLQQDELL
                     GFWVHIDADVLDDSIMPAVDYRLHGGLSFSELSELLKIIVASGRTVGMDITIFNPNLD
                     SDGSIAYRFVSSILEGLSFIK"
BASE COUNT          589 a          297 c          346 g          591 t
ORIGIN      
        1 ataatatgct aaacgagttt catgccgcta tggccaaatg gattggccaa ggaaacatca
       61 agtggaaaga aacagtgtca gaaggaatag agaatgcacc aaaagcgttc cttggacttt
      121 tcaaaggaga aaactttggt aaaatgcttg taaagattgg tcctgatccg gctttataag
      181 gctaaggcta aattgagtac tagtctatta ctaagtcagg aagaaaaaag atgaaagcaa
      241 gggaaagatt ttatcaaatc agtaaagaat aattgatatc taatagcttt tgtagaaatt
      301 actgcagtag agtagtactt cgtgcgaaag tattagtgac aagctcagta caaaccataa
      361 cccgtaatgt tgcctactaa taatctaaat aatagtctca tagtataaag ggctgaaact
      421 cttttctctt gtagatccta tattcggcaa atcatttcga ttagaggaaa actttggtaa
      481 caaatactaa tagaagataa aacaaagaca tatactgttt tctaatatct actatagtga
      541 taaggactaa ctataaatat ataaaaaatc tcttttggat tggtcttagg tagatagttt
      601 tgccatcaca atttacaatt atagatgctc cttcaattct aggattacga cctacaggag
      661 tagaatatct accggaagca ctgaaggcag caggtctgat ggagaggtta aatgctgatt
      721 actcaggacg agtttcttct ttgccttata attccgagcg tgacaaaata acgcttctac
      781 taaatcctga ctccatcaaa acattttctt tacatcttgc agacagagtc gcttctgtga
      841 ttcgtaatat gcaataccca cttgtactag gaggtgattg tagcatagta attggaaatc
      901 ttttagccct acggcgtttg ggaagatatg gtttgttctt catagacggc cacgctgatt
      961 tttatcaacc agaagcatct ttaacaggag aggttgctga tatggatctt gcaattgtat
     1021 ctggtcgagg tccagaggta ctgactaata taaataattt caagccactt gtccgagatc
     1081 aagacataat tctatttggc taccgtgaga gagaacaagc cgcaagtttc ggaagtcaag
     1141 atgttcgtaa taccgatatt aattcatttg atctttcata cgtgaaagaa ctaggaatta
     1201 caactgctgc gtcaatggct gtaaagaagc ttttgcagca agatgaacta ctcggatttt
     1261 gggtccatat tgatgctgat gtattggatg actcaatcat gcctgcagta gattatcgtc
     1321 tacatggagg attaagtttc tctgagctaa gcgagctttt gaaaatcata gttgcctcag
     1381 gtcgcactgt tgggatggat attactatat tcaatcccaa tcttgattcg gatggttcaa
     1441 tagcctatag atttgtctcg agtatactag aaggtctatc gttcataaaa taagaaattc
     1501 tttttgactg ttatctttac tcaacatatg gttcgcaaag agataggaat cctaagactc
     1561 ccctaattga tttattggta tattatgagg tctctgaagg taaaagagaa acgattaaat
     1621 agaaatttta taatcatttt gtttataccc aaaattatca ataataaaag attgttctat
     1681 atctttatta tccgagttta tgtgttcatc tcagagcata ttgttacgta acttttttct
     1741 tattttgttt gtttatatat tcgaatttat atatatcttc tttctgattc tttaattgga
     1801 taatcatttg cactcatatc acg
//
LOCUS       DATCMF010000318         1587 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_504123, whole genome shotgun sequence.
ACCESSION   DATCMF010000318 DATCMF010000000
VERSION     DATCMF010000318.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1587)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1587)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1587
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_504123"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..225)
                     /locus_tag="VIL14_03990"
     CDS             complement(<1..225)
                     /locus_tag="VIL14_03990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522901.1"
                     /translation="MSDNRPYNMEISNDECVFLYYSLEVMKQAISSSIPYDTAPYKVG
                     LEDAVKYINSVLGIRDKAMENAAGGDIEKAR"
     gene            complement(695..1081)
                     /locus_tag="VIL14_03995"
     CDS             complement(695..1081)
                     /locus_tag="VIL14_03995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY8522902.1"
                     /translation="MAGQNNKRRILTVDDNPDITLTVKMGLEASGLFEVETFNDPELA
                     LSSFKPGLYDLALLDMRMPKMYGHELYDEIKKIDDRLKVCFMTASYQNYEALRAAFPT
                     IEIECYIQKPVEIKDLVRRINAELEQ"
     gene            complement(1385..>1587)
                     /locus_tag="VIL14_04000"
     CDS             complement(1385..>1587)
                     /locus_tag="VIL14_04000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522903.1"
                     /translation="LTSLSLLINAIADDGYVHDFVNGNSQSLWFWNMFYVTDFIIMAG
                     ALFWYNRFHISSELSRKNTINL"
BASE COUNT          491 a          307 c          258 g          531 t
ORIGIN      
        1 tcgggctttc tctatatcgc ctcctgcagc attttccatt gctttatctc taattcctag
       61 aaccgaatta atatatttca cagcatcctc cagaccaact ttatacggag cagtgtcata
      121 gggaatacta ctactgattg cctgtttcat cacttctaac gaatagtata aaaatacaca
      181 ttcatcgtta cttatttcca tattgtaagg cctattatca gacataatga tctcaatgaa
      241 acgggcctaa taaatatagt cattttaacc ttgcctagat ttagtgaatt acataacttc
      301 gcattagaag cgaacgaaag gttttcggtg catctgtcga gatgtcgaat agattcccaa
      361 gtataataga tatgatgcca atccagtgaa ggagatagtg acaagaccga atggaggata
      421 tggaactaga accaggaatg ttggttggca gtaaataata gtacaagtct ggctgaaagt
      481 gctccagtgc tatagaagga tcgttgaatg taacaacatt gaatcccgta cgttctagag
      541 ctatctccaa taatgaagtc aaatctggtt catcatttac aaataagatt ctcttcttct
      601 tattgttcga agataaacgt gacatcactt cacggctata tcttgcctct atagtttatt
      661 atgattataa caatcatcag tactgccaat actattattg ttctaactct gcatttatcc
      721 ttctcaccaa atctttgatt tcaacaggtt tttgaatata acactctatt tctattgttg
      781 gaaatgctgc tcttaatgct tcatagtttt gataagatgc agtcataaag cataccttaa
      841 gtctatcatc tattttttta atttcatcgt atagttcatg cccatacatc tttggcattc
      901 tcatgtcaag aagtgccaaa tcgtatagtc caggtttaaa agatgacaat gctagttctg
      961 gatcattgaa tgtctcgact tcaaataggc cactggcttc taaacccatc tttactgtga
     1021 gagtaatatc aggattatcg tctactgtca aaatccttct tttattattt tggccagcca
     1081 actcttctta gttattgtaa actaacaaat aaacatatta gcaatactga taggctaaac
     1141 gttacctgat agaacttgga aatggtgcta tattgataag ctggacggat agtcaattat
     1201 gctcttgcat cgtctgatta tgcatcccta tcgaggcaat gtgttgatta caatagctgc
     1261 ataccaaata accttcatct gaatcggtat gaaagaatct gcaagtatga caccagtact
     1321 gctttagttg gtttttactg ctgttattct tgttcatatt gctgattgcc ttccttacta
     1381 ttgattacaa attgattgtg ttcttcctac ttaattcact cgaaatatgg aatctgttat
     1441 accaaaataa agcacctgcc atgattatga aatcagttac ataaaacata ttccagaacc
     1501 agagactctg tgagtttcca tttacaaagt catgcacata tccatcatct gctatagcat
     1561 tgatcaataa ggacaatgaa gtaagaa
//
LOCUS       DATCMF010000319         2165 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_504182, whole genome shotgun sequence.
ACCESSION   DATCMF010000319 DATCMF010000000
VERSION     DATCMF010000319.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2165)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2165)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2165
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_504182"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            6..842
                     /locus_tag="VIL14_04005"
     CDS             6..842
                     /locus_tag="VIL14_04005"
                     /inference="COORDINATES: protein motif:HMM:NF003077.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2 subunit
                     gamma"
                     /protein_id="HEY8522904.1"
                     /translation="MALQVLGIRQIVIVQNKVDLTDSEKAIENYKQINDFVSGTVASD
                     APVIPISAQHKLNIDALIEAIENSIKTPPRAMNKEAIMHVLRSFDINKPGLPLEQVKG
                     GVIGGALIQGELSVGDEIEIRPGFVDEKRSKYEPIHSIISTLGTGAGLVEKVRPGGLV
                     AIGTKLDPTYIKSDSLIGSVIGKPDTLPDDVEDIRIDVKLFDTAVGTQEMVKVEPIKT
                     KESLRLNVGTAATLGAVTGSKDNQVEVKLRKPLCLLPKSRVAISRRIADRWRLIGAGI
                     TS"
     gene            1019..1414
                     /locus_tag="VIL14_04010"
     CDS             1019..1414
                     /locus_tag="VIL14_04010"
                     /inference="COORDINATES: protein motif:HMM:NF037434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522905.1"
                     /translation="MNVLCDTSFLMVLVSRPITQFEKVEMELGKLNFLIPDVVIEELK
                     KLEMRTGPKRSLVAKTAIQISNSKFRIIELPTYRQVDDAIIEYAKVTKCAVATLDKNL
                     KNKLQTFNTLVITLSSNRLVIVYPPRTIF"
     gene            1441..2103
                     /locus_tag="VIL14_04015"
     CDS             1441..2103
                     /locus_tag="VIL14_04015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEY8522906.1"
                     /translation="MLEYNGFEIHWIGHDGFRIVNNNNKNIIYIDPFQLTTKQKGRKD
                     ADIMLVSHNHFDHLSLGDLRELVNENTEIVAAKECLENFQDLSVSKIIPLMPGEKTTI
                     KGVSIEAVRAYNTNKKFHPKEDNKIGYIIGVDTTRIYHAGDTDIIPEMERVDPDIALV
                     PVSGTYVMTADEAAKAINEIIKPRKFAIPMHYGAIVGSKEDAEKFKGLVKVCPVKILD
                     KE"
BASE COUNT          738 a          389 c          468 g          570 t
ORIGIN      
        1 atctgctggc tctccaggtg cttggaataa ggcaaattgt aattgtccaa aataaagtcg
       61 atttgactga ctccgaaaag gctatagaaa attacaaaca gattaatgat ttcgtaagtg
      121 ggactgtcgc atcagatgct ccagttattc ccatctccgc acagcataag ctgaacatcg
      181 atgccctaat agaggctata gaaaactcaa ttaaaactcc tccaagagct atgaacaagg
      241 aagcaatcat gcatgtgtta agatcttttg atataaacaa gcctggtctg cctttggaac
      301 aggtcaaggg cggtgtaatc ggcggtgccc taatacaagg cgagctgtca gtgggagacg
      361 aaatcgaaat tagaccgggt tttgtagatg agaagagaag caagtacgaa cctattcatt
      421 caatcatttc tactttgggt accggggcag gactagtaga aaaagtcagg ccaggagggc
      481 tagttgccat aggcacaaaa ctagatccca catacataaa aagtgactcg ttgataggat
      541 cagtgattgg taagcccgat actttgcccg atgatgtcga ggatatccgc attgatgtca
      601 agctttttga taccgctgtt ggtacgcaag aaatggtaaa ggtagaacct attaaaacca
      661 aagaatcact tagattgaat gtggggacag cagcgactct aggtgctgtt acgggctcta
      721 aagataacca agtagaggta aaactaagga agccactgtg tcttcttccc aaaagccgag
      781 tggcgataag tagaaggatc gcagatagat ggagactaat cggtgctgga attacgtctt
      841 agcggattac tagccggaat tgatgcccca agcctttctc ttgtattcct gaaatcaagt
      901 gcttaatacg tggcaattga ggatcctata tcattatggc tgctagtaac aacgcccgaa
      961 aaaactttcc tcactgctat ttttaccata agagatacgg aggtggctag gatatagaat
     1021 gaacgtgtta tgcgatacaa gctttctgat ggtattggta tcaaggccta tcacccaatt
     1081 tgaaaaggta gaaatggaat tagggaaact taattttcta ataccagacg ttgtaattga
     1141 agagcttaag aaacttgaaa tgcgaacagg tccaaaaaga tctttggtcg ctaagactgc
     1201 aattcaaatt tctaattcca aatttagaat tatcgaactt cctacttaca gacaggtaga
     1261 tgacgccata atcgaatatg caaaagtcac caaatgcgcc gtagcaactt tagataagaa
     1321 tttgaagaat aaattgcaga catttaacac attggttatc acacttagca gcaatagact
     1381 ggtaatcgtg tatcccccga gaacaatctt ttaaatattg ctgaaataat gatttaggct
     1441 atgttagaat ataatggctt tgaaattcat tggataggcc atgatgggtt ccggatagtt
     1501 aacaataata acaagaatat aatctacatt gacccatttc aattaacgac taaacagaaa
     1561 ggtagaaagg atgccgacat tatgcttgta agtcataacc atttcgacca tctaagcttg
     1621 ggggatctga gagaacttgt aaatgagaat acagagattg tcgctgccaa ggagtgttta
     1681 gaaaattttc aagacctatc tgtaagtaaa ataattccat taatgccggg tgaaaaaact
     1741 actatcaaag gtgtatctat cgaggctgtt cgggcttata ataccaacaa gaaatttcat
     1801 cccaaggagg ataacaaaat tggttatatt atcggtgttg atactacgcg catatatcat
     1861 gctggagata cagatataat tccagaaatg gaaagagtag accccgatat tgccttagta
     1921 cctgtttctg gaacctacgt tatgaccgca gatgaggccg cgaaggcaat aaacgaaatt
     1981 atcaaaccaa ggaaatttgc aataccgatg cattatggtg caatagttgg ctcaaaagaa
     2041 gatgcagaga aattcaaagg gctggtaaaa gtttgtcccg taaagatatt ggataaagag
     2101 taagagacca gacgctctaa aaagaatatc tacctacact cttttaaaaa atttaaatat
     2161 gatct
//
LOCUS       DATCMF010000320         2403 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_570212, whole genome shotgun sequence.
ACCESSION   DATCMF010000320 DATCMF010000000
VERSION     DATCMF010000320.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2403)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2403)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2403
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_570212"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(245..1228)
                     /locus_tag="VIL14_04020"
     CDS             complement(245..1228)
                     /locus_tag="VIL14_04020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HEY8522907.1"
                     /translation="MDLLDRNILNEIQWCFPLKERPFLEIATHHNISENEVMKRIHNL
                     KQIGLIRQINAIFDTRRLGYKSALIAFAVKPEKLDYIANEINKCSGVSHNYERNHEFN
                     IWFTLAVPPEKDMKEILDKMSSLDGVIKYRLLPTLKMYKIGVKLDMVNNDSPNPKPTE
                     TIKELNPEKSKLTDLDKEFIRELQKDIEIIPEPFKKSAEKLRITQKELFEKSKEFEEN
                     GIMRRFAAILRHRDAGFTANGMIVWKVPEEVINKVGYKLAEFPQVSHCYRRPTYPDWE
                     FNIFSMIHARSIEAAEKIAKEISGIIKIYDYKILFSSREFKKERVKYFEEE"
     gene            1526..2185
                     /locus_tag="VIL14_04025"
     CDS             1526..2185
                     /locus_tag="VIL14_04025"
                     /inference="COORDINATES: protein motif:HMM:TIGR00405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor Spt5"
                     /protein_id="HEY8522908.1"
                     /translation="MKNKKDIDDNLNDVIEFDNDNYDKDTNELESNNTDTLSKAEKTK
                     NAKKVNSPTLNNQSDPSIKNNHNVDIQDSDSKFFAIRITGGQENVVANILQNKINSKR
                     ISLRSILILENFKGYVIVEAPDSNIAYDALYGVRHVRGQIRGDLPFSDIEKYLIKKPV
                     VTELSIDDTVEVIAGPFKSMKAKIIRVDYEKQEATVVLLDSPYQIPVTVDANYLKKTS
                     G"
     gene            2282..>2403
                     /gene="rpl11p"
                     /locus_tag="VIL14_04030"
     CDS             2282..>2403
                     /gene="rpl11p"
                     /locus_tag="VIL14_04030"
                     /inference="COORDINATES: protein motif:HMM:NF015879.4"
                     /note="binds directly to 23S ribosomal RNA; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HEY8522909.1"
                     /translation="MSDKKTVSALVTGGEASAGPPLGPSLGPLGINVLQVVNTI"
BASE COUNT          824 a          340 c          323 g          916 t
ORIGIN      
        1 aaaagtattg aaatcttcat ttttaaacgg atcaggagaa gtaaaagaat caatttgaac
       61 gtattttaga aattcatcct tgaaggaata ggcaagttga ctcataattg ctatatctgc
      121 catattaaaa gacttgattg attctatttt tggggattgg atttcagaag ataacacaat
      181 tatcttttaa ttatttgata tatattttat tttattaaac gattattaag aattatcaaa
      241 ttgattactc ctcctcaaaa tattttactc tttctttctt aaattctctt gaactgaata
      301 gaatcttata atcatagatt ttaattatac ctgaaatttc tttggcaatt ttttcagcag
      361 cttctatact tctcgcatgt atcatactaa atatattaaa ttcccaatct ggataagttg
      421 gtcttctata acaatgactt acttggggaa attctgccaa cttgtatcct actttattta
      481 tcacttcttc tggtaccttc cagactatca taccgtttgc agtaaatcct gcatctctgt
      541 gtctcaagat agcagcaaaa cgtctcatta tcccattttc ttcaaactcc ttcgactttt
      601 caaataattc tttctgagtt attctaagtt tctctgcgct ttttttgaaa ggctctggaa
      661 ttatttctat atctttttgt agttctctta taaactcttt atctaggtca gtcaatttgc
      721 ttttttcggg attaagttct ttgatcgtct cagtaggttt aggatttggg gaatcattat
      781 ttaccatgtc aagtttaacg cctatcttat acattttcaa tgttggcaaa agcctatatt
      841 ttattactcc atccagggaa gacattttat ccaaaatttc tttcatgtct ttttctggag
      901 gtactgctaa agtgaaccat atgttgaatt catgattcct ttcataatta tgactaacac
      961 cagaacattt gtttatttca tttgcaatat aatctaattt ttcaggtttt actgcaaaag
     1021 ctattagtgc actcttgtat cctaatcttc tagtatcaaa aattgcatta atttgtctaa
     1081 tcaatcctat ctgtttgagg ttatgtattc ttttcataac ctcattttct gatatattat
     1141 gatgagtagc tatttctaaa aatggtcttt ctttaagagg aaaacaccac tgaatttcat
     1201 ttaaaatatt tctatcgagt aaatccattt gatttacttg tatagatgtt ttcaattttt
     1261 gttgaattat gtataatatc tattaaatac ttatgcattt atcttatgtt attatttaaa
     1321 tataatatag tataatcata aaaagttgcg gtttaattat aatatctaat tacctatctc
     1381 gatctaagga atttacaatt gattgttaat aacaatacta tttatcaaca atgaaaataa
     1441 ttgtttcttt ttatgcatac taatagttaa aaatataaaa taaatttata atatactgta
     1501 atcgtaaaat attgtattat aattaatgaa aaacaaaaaa gatatagatg ataatctaaa
     1561 tgatgttata gagtttgata atgataatta tgataaagat actaatgaat tagaatctaa
     1621 taatacagat actttatcta aagctgagaa aactaaaaat gcaaaaaaag ttaattctcc
     1681 tactctaaat aatcagtcgg atccatcaat taaaaataac cataacgtag atattcaaga
     1741 ttctgattca aaattttttg caattagaat aacaggtggt caagaaaatg tcgttgcaaa
     1801 tattttacaa aataaaatta attcaaaaag aataagttta cgttctattc ttatcctgga
     1861 gaatttcaag ggttatgtta ttgttgaagc tccggattca aatattgcat atgatgcatt
     1921 atacggagtt agacacgttc gtggacaaat acgaggagat cttcctttta gtgatattga
     1981 aaagtatctt ataaagaaac cagtagtaac agagttaagc atagatgata cagtagaagt
     2041 tatagccgga ccttttaaat cgatgaaagc aaagattata cgtgttgatt atgaaaaaca
     2101 agaagctact gtagtattac ttgattctcc gtatcaaatt cctgttactg tagatgcaaa
     2161 ttatttaaaa aaaacaagtg gatagttttt ttatatttat atataaagtg taaataaata
     2221 taaaaataat tttaattcta tataatgacg atttatattt ccgaaaaata ctatttttta
     2281 catgagcgat aaaaaaactg tctccgcttt agtaactgga ggagaagcta gtgcaggacc
     2341 tcctcttgga ccttcattgg gacctcttgg aattaatgtc ttgcaagttg taaatactat
     2401 taa
//
LOCUS       DATCMF010000321         1709 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_570261, whole genome shotgun sequence.
ACCESSION   DATCMF010000321 DATCMF010000000
VERSION     DATCMF010000321.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1709)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1709)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1709
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_570261"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..944
                     /locus_tag="VIL14_04035"
     CDS             <1..944
                     /locus_tag="VIL14_04035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522910.1"
                     /translation="LDDVIKLHERLDSMVNRFSEVSKSHKKVFNFFISKYADKLKTEF
                     ENISSLSMQCKYEIDNFENERQPLQNCFDNIDALIHKNELIKVEEEKFKTKQFQLDDL
                     KLKIKKLNAEITDLTDSRKYIESKEVLKKIQVLDFEKDNLHKELINAFSRVSRAMNKY
                     SYGLNRLIVQRIEIMTEQPWKIFEDFHTYLDLIKEVKNAISKGKIILKESEKAETYFD
                     NIINSLPDYKEKEEKLNNEIKKLNSSKNMHIISKLNELKKKYANYNEELQYIESYLKD
                     SQTEIAKNKEEYDNLLKSIETYINLITKSKYHLSISK"
     gene            1339..1572
                     /locus_tag="VIL14_04040"
     CDS             1339..1572
                     /locus_tag="VIL14_04040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522911.1"
                     /translation="MKTLKNFSKPVKIGMTILLIGVAVMAYGTYLNSEIISYYALLII
                     ITGLFIYLAYTFNFASKSNLDYANKEKGKKKKK"
BASE COUNT          724 a          187 c          216 g          582 t
ORIGIN      
        1 ctctggatga tgttattaag ctacatgaaa gattggattc gatggttaat agattttcag
       61 aagttagcaa atcacacaaa aaagtattca atttttttat aagtaaatat gctgataaac
      121 ttaaaacaga atttgaaaat atttcttcct tatcaatgca atgcaaatat gagatcgata
      181 attttgaaaa tgaaaggcaa cctcttcaaa attgttttga caatatagat gccctcatac
      241 ataaaaatga attgattaaa gtggaagaag agaaatttaa aacaaaacaa tttcaattag
      301 atgatttaaa actcaaaatc aaaaaattga atgcagaaat aactgatcta actgattcaa
      361 gaaaatatat agaatcaaaa gaggtattaa aaaaaattca agtactagac ttcgaaaaag
      421 ataatcttca taaagagtta attaatgctt ttagcagagt gagccgagct atgaataaat
      481 attcttatgg attaaatcgc ttaattgttc aaagaattga aataatgaca gaacaaccat
      541 ggaaaatatt tgaagatttt catacttatt tggatttaat aaaagaagtt aaaaatgcga
      601 ttagtaaagg taaaattata ctaaaagagt cagaaaaagc agaaacttat tttgataata
      661 taataaattc attaccagat tataaagaaa aggaagaaaa attgaataat gaaattaaaa
      721 aattgaatag tagtaagaat atgcatatta tttctaaatt aaatgaatta aaaaaaaaat
      781 atgcaaatta taatgaagaa cttcaataca ttgaatcata cctaaaagat tctcaaaccg
      841 aaatagcaaa aaataaagaa gaatatgata atttgttaaa atctattgaa acttatatta
      901 atcttataac aaaaagcaaa tatcacctat caatttcgaa ataactgtaa tttgaatttt
      961 caaaaactaa aattcattta cttagattat tgttttattt gtcttaataa cggccataca
     1021 atacaatgaa agtagtgttt atccattata gtttagatta ttttgtcgat cgatctcttg
     1081 ttgtcataga aaataaaaga ggacatttta ttttaattaa atttttacct tttgctatac
     1141 ttattaatca tcatttgcat taagttccag ttttttcttt tttaacataa aatattttat
     1201 tcttcacgtc attaataata ataaatttaa tattaatata aagttataat attattttag
     1261 ctgttacttt tgattaaaca ctcctatgat agtaatgcca attactcata gtctataaat
     1321 aaataactga gaaagttaat gaaaacattg aagaattttt caaaacctgt taaaattggc
     1381 atgacaattt tgcttatcgg tgtagcagta atggcttatg ggacatattt aaatagtgag
     1441 ataatttcat attacgcctt actgattatt attactggtc ttttcattta tctagcatac
     1501 acttttaatt ttgcaagtaa atcaaacttg gattatgcta ataaagaaaa aggaaaaaag
     1561 aagaaaaaat gataaagcta aatctacaaa gagagtccag agaatatcta aacctatttt
     1621 ttggatttct tattgtaatt atatatttgt ttacagcata aattagaatt aggatgatcc
     1681 aaataaaata ccctagattg atctattaa
//
LOCUS       DATCMF010000322         2419 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_106990, whole genome shotgun sequence.
ACCESSION   DATCMF010000322 DATCMF010000000
VERSION     DATCMF010000322.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2419)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2419)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2419
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_106990"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1642
                     /locus_tag="VIL14_04045"
     CDS             <1..1642
                     /locus_tag="VIL14_04045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="copper-translocating P-type ATPase"
                     /protein_id="HEY8522912.1"
                     /translation="GNQKNNNNRHSNNQSNVNFDNSKKLKSITKELKEIEIPVEQIEE
                     GDLMLIRPGERVPTDGLVIDGSSSLDESALTGESIPVDKTTGDEVIGATINKNGLLKV
                     KATKIGQDTVLSQIITLVEEAKTGKAKLERMVDQVAKYFVPAIVLIALGVFLGWYFIG
                     NAGLTYSILAFVSVMIIACPCALGIATPAALMMGAGKGAENGILYKGGEHIEIANKVN
                     TIVFDKTGTLTVGKPSVTDIVSLTDIGEQELLRLAAIAESGSEHPLAQAVIRKAKENG
                     TPITNPDSFEAVSGYGLKATYSNHTIMIGNRKMMEDNQIAVTESMDTKLSVFEKEGKT
                     AVLVSIDNTLSGIIAISDTIKENAKGAIKALKSKGIEVIMLTGDNKRTANAVASQLNI
                     DRVIAEVLPHQKEEVVAKLKTQEGKVVAMVGDGINDAPALARADLGIAIGSGTDVAKE
                     TGGIILIKDDIRDVVTALDLGKRTVSKIKQNLFWAFAYNTGLIPIAAGALVPVLGLGV
                     FGWLPILAGLAMAMSSVTVVTNSLLLGKYKPKYDTYYH"
     gene            complement(1696..2328)
                     /locus_tag="VIL14_04050"
     CDS             complement(1696..2328)
                     /locus_tag="VIL14_04050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522913.1"
                     /translation="MSSMMINGINFLLISVVTTFLFLIPSFNVDGFRVVNDDVPQDLE
                     YGINFKYPKTWEPLPEFDIDTTDDLSTTSFLLAQKDSIYNYKGKTFYGYLISIKVIDD
                     LLVPTSSEQWAKNQILSISKQSISYKLIEPSGPNGEILTLPISQGEYNGYTYTIEDKT
                     TQKIKVNTVLVLDNKRYEFEYTSPNVNDEVSYRYIDDYKEILNSVKFTGS"
BASE COUNT          899 a          341 c          447 g          732 t
ORIGIN      
        1 aggaaaccaa aaaaataaca acaatcgcca tagtaataat caaagcaatg taaattttga
       61 taattctaaa aaattaaaat caataacaaa ggaattaaaa gaaatagaaa ttccagtaga
      121 gcaaatagaa gaaggcgatc taatgctcat tagacctggc gaacgagttc cgacagatgg
      181 tttagtaatt gatggaagtt catctcttga cgaatcagct ttaacaggtg aaagtattcc
      241 agtagacaaa acaacaggag atgaggtaat aggtgccaca attaacaaga atggtcttct
      301 taaagtcaaa gcaacaaaga taggacaaga tacggtcttg tctcaaataa taacattagt
      361 ggaagaggca aaaacaggaa aggcaaaatt ggaaagaatg gtagaccaag tagcgaaata
      421 ttttgttcct gctattgtat tgatagcatt aggagtattt ctaggatggt actttatagg
      481 aaatgcagga ttaacctatt caatacttgc atttgtatct gtaatgatca ttgcctgtcc
      541 ttgtgcacta ggtattgcta ctcctgctgc attgatgatg ggagccggaa aaggtgctga
      601 gaatggaata ttgtataaag gaggagaaca tatagaaata gcaaataaag ttaatactat
      661 tgtttttgat aaaactggta cattaactgt aggaaaacca tctgtaactg acatagtatc
      721 tttaacagac attggagaac aagaattact aagacttgca gcaatagcag aatcaggttc
      781 agaacatcct ttagcacagg cagtaatcag aaaagctaaa gaaaatggta ctccaattac
      841 caacccagat tcatttgaag cagtttcggg atatggtctc aaggcaacat attcaaatca
      901 caccattatg attggcaata gaaaaatgat ggaagataac cagattgcag ttactgaaag
      961 tatggataca aaactctctg tatttgaaaa agaaggcaag actgcagttt tagtttccat
     1021 agataatact ctttcaggaa taattgctat atctgataca ataaaagaaa atgccaaagg
     1081 cgcaattaaa gctttgaagt ctaaagggat agaggtaata atgcttactg gagataataa
     1141 gagaactgca aacgcagtag catcacagct taatattgat agagtaattg cagaggtact
     1201 gcctcatcaa aaggaagaag tagtagctaa attaaaaaca caagaaggta aagttgttgc
     1261 aatggttggt gatggtatta acgatgcacc tgcattggca agagcagatt tgggaattgc
     1321 aataggttct ggaaccgatg ttgcaaaaga aacaggaggt ataatattaa taaaggacga
     1381 tataagagat gtcgtaactg cattagattt aggtaaaaga actgtttcaa agataaaaca
     1441 gaatctgttc tgggcatttg catataatac tggtttaata ccaatagcag cgggagcctt
     1501 agtgcctgtt cttggattag gtgtatttgg ttggcttcca atacttgcag gtttagcaat
     1561 ggctatgagc tctgtaactg tagtgacaaa ttctttattg cttggaaaat acaaaccaaa
     1621 atacgatact tattaccatt aacctttttt ttaaaaagaa gtagctacgg tgagattaac
     1681 tactattaca tattgttaac tacctgtaaa ctttacggaa ttaagaattt ctttgtaatc
     1741 atcaatatac ctataagaaa cttcatcatt gacgttaggg gaagtatatt caaattcata
     1801 tcttttattg tctaaaacta atacagtatt tacttttatt ttctgtgttg ttttatcttc
     1861 tattgtataa gtataaccat tgtattctcc ttgtgaaatt ggtaatgtca aaatttctcc
     1921 attgggacca gaaggttcta ttaacttata agagatagat tgcttagata tactaagaat
     1981 ttgattttta gcccattgtt ctgaagaagt aggaactaat agatcatcga taacttttat
     2041 tgatataaga tatccataga atgttttacc tttgtaattg tatatagaat ctttttgtgc
     2101 taatagaaaa gatgttgtac tcagatcatc agtagtatca atatcaaact caggtaatgg
     2161 ttcccaggtt ttaggatatt taaaatttat tccgtattct aaatcttgag gaacatcatc
     2221 atttactacc ctaaatccat cgacgttaaa agatggtatc agaaaaagaa aagtggtgac
     2281 tactgagatt aataaaaaat ttattccatt tatcatcatt gagctcaaat aaaactatat
     2341 acttgtaact ttataaattg agcaattaca ttatcaatat taattgaaga ataacttaat
     2401 aaataattaa ttctaatag
//
LOCUS       DATCMF010000323         2025 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_305296, whole genome shotgun sequence.
ACCESSION   DATCMF010000323 DATCMF010000000
VERSION     DATCMF010000323.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2025)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2025)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2025
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_305296"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1099)
                     /locus_tag="VIL14_04055"
     CDS             complement(<1..1099)
                     /locus_tag="VIL14_04055"
                     /inference="COORDINATES: protein motif:HMM:TIGR02928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY8522914.1"
                     /translation="MYESIIFKDRKKLSPRYLPKEISHREKQIDLLVRTFLDIKDDPD
                     KFPLTVIQIIGPAGIGKTSTVIKFSDILDNELRKSKINIKIVYINLKLQGGNKYAIYK
                     YLLSCIAPELPAQGLSAEEMLRQMLDYLILNNVYSIIILDEIDYLIKISKEIGIIYDL
                     TRLNEFDPSKKCNVKGVIFIARSTEFYEKLDEAELSSMGRAYIEFPNYTIDQVSDILI
                     RRSKDAFQDNVIGTDIIDWIAKIVVSPIVNGDIRYALDLLSYAGNLAESEGTEKVLLD
                     HVKKINKQIYNGITDDDIKELSKLQIIILLGIIKGLKIKNKDYVELKEVRMQSLEIAE
                     KYKLKKLDVEDILDDLATRKIIKIISLKKISL"
     gene            complement(1168..>2025)
                     /locus_tag="VIL14_04060"
     CDS             complement(1168..>2025)
                     /locus_tag="VIL14_04060"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEY8522915.1"
                     /translation="DTKYPIIEGIAIIVKDMFDYIQNRTEMYGKWLLHCHSKEMKEYL
                     KDIGKTIFEANKTNTYEDGGIWYFPYKWFQQEDHKEDRLMKSLKGGPNANELYDRVIN
                     SINPKIDGIALDIGCAMGKTTLQLSQKYSLVIGIDLSFSFIKEARKNMQESRQGNVEF
                     CVADAEFPPFHPMKFDLIIAINLLELVNTKKLLSSCHWLLKPHSNIIITDPYDFNRER
                     ILDKKYDARSFRILLEENGFEINESSLKKEAFIPWILKINERIYLFYFVDYIKAKKIS
                     KHKVNINKY"
BASE COUNT          626 a          335 c          233 g          831 t
ORIGIN      
        1 tcaaactaat cttttttaaa gaaattattt ttataatctt tctagttgca agatcatcta
       61 aaatatcttc tacatccaat ttttttaatt tatatttttc agcaatctcc aaactttgca
      121 ttctaacctc ctttaattcg acataatctt tatttttaat ctttaatccc tttattattc
      181 ctaacaaaat aattatttgt aacttggata attctttaat atcgtcatca gtaattccat
      241 tatagatttg tttatttatt ttttttacat gatccaggag tactttttct gttccctcag
      301 attctgcaag atttcctgca tatgataaca aatctaatgc atatcttata tctccattga
      361 caatagggga aactactatt tttgctatcc agtcaattat atctgtacca attacattgt
      421 cttgaaaggc atcttttgac cgtctaataa gaatatcact cacttggtca attgtgtaat
      481 taggaaattc aatatatgct cgtcccattg aacttaattc agcttcatct aatttctcat
      541 aaaattcagt gcttctagca ataaaaataa ctccctttac attacatttt ttggagggat
      601 caaattcatt caatcttgtt agatcataaa taatcccaat ttcttttgaa attttgatta
      661 aataatcgat ttcatcaagt atgattatag aatatacatt atttagaatc aaataatcaa
      721 gcatttgtct aagcatctcc tcagcactga gaccttgtgc aggtaattcg ggagcgatac
      781 agcttaacaa gtatttgtaa attgcgtatt tatttccacc ttgtaatttt aaatttatgt
      841 acactatttt gatatttatc ttactttttc ttaattcatt gtctaaaata tcagagaatt
      901 tgatgacagt tgatgttttc cctattcctg caggaccaat tatttgtatg accgttaaag
      961 gaaatttatc tggatcatct tttatatcca aaaatgttct aactaacaga tctatttgct
     1021 tttctctatg agagatctcc ttaggtaaat atcgaggaga taactttttt ctatctttaa
     1081 aaataatact ctcatacata tattgtgtta cactctcttc tatttgttct taatattatt
     1141 aattattctt tggcacaaat ctccaattta gtatttattt atatttactt tatgttttga
     1201 gatttttttt gctttaatat aatctacaaa gtaaaataaa taaattcttt catttatttt
     1261 taatatccaa ggaataaagg cttctttttt taaacttgat tcatttattt caaatccatt
     1321 ttcttcaagt aagattctaa atgatctagc atcatatttc ttgtctaaaa ttctttctct
     1381 attaaaatca tatggatctg taattataat attactatgt ggttttaata accaatgaca
     1441 agaggataat agtttcttcg tattaaccaa ctctagtaga ttaattgcta ttataaggtc
     1501 aaatttcatt ggatgaaaag gaggaaattc tgcatcagct acacaaaatt caacatttcc
     1561 ttgcctagat tcttgcatat ttttacgagc ttctttgatg aatgaaaatg aaagatctat
     1621 ccctattaca agggaatatt tttgagacag ttgcaatgta gttttaccca ttgcacatcc
     1681 tatatccaaa gctataccat ctatctttgg gtttatacta ttgatgacac ggtcataaag
     1741 ttcattagcg tttggacctc ctttcaatga tttcatgagt ctatcctctt tgtgatcttc
     1801 ttgttggaac catttataag ggaaatacca aatgccaccg tcttcatatg tattagtttt
     1861 attagcttca aatattgttt ttccgatatc ctttagatat tccttcattt cttttgaatg
     1921 acaatgtaac aaccattttc cgtacatttc tgtcctattt tgaatgtagt caaacatgtc
     1981 ttttacaatt attgctatac cttcaataat gggatatttt gtatc
//
LOCUS       DATCMF010000324         2238 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_570366, whole genome shotgun sequence.
ACCESSION   DATCMF010000324 DATCMF010000000
VERSION     DATCMF010000324.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2238)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2238)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2238
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_570366"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1169)
                     /locus_tag="VIL14_04065"
     CDS             complement(<1..1169)
                     /locus_tag="VIL14_04065"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEY8522916.1"
                     /translation="MDFKEIILLSLDAIKERKTKSLLTIVMVMVGSSLMIAVSGMGAG
                     FTEFFNKQTSNLAGNIMFINPAPQTQNGGTGPGGGNNAAPPPVAKITLNSAVEKRLSS
                     LPLVKEVIPSYQSQVTIESKGESKDFAIFSLNPQKLSIIAPTLEYEEGSMLRSNDPSA
                     MIVSSDVAFPPGESTPFLSLGQTVQVLYSFVDPITGNREIETKSFVIRAIIKQSGNPN
                     IDKAVIINEQIGNTLLHKSGKFDALIVVALSPDNIDNIETEIRKLYGNDIGITTVKAL
                     IQTIKEFTSGLSAFLLSIAIVSLIVGAVGIITTLYTSVIERTREIGTLKAIGARNFDI
                     LTLFLVEALLIGILGATSGLGTGVILGYILNTGFSSNSDGNNSAPVFLITDMTRV"
     gene            complement(1247..>2238)
                     /locus_tag="VIL14_04070"
     CDS             complement(1247..>2238)
                     /locus_tag="VIL14_04070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522917.1"
                     /translation="NNTNTNTDRIISNTTKKDTLLLRAGMIESAKIIVSNNGNEELKN
                     VVFSLKSESDSVKLLGDTRWTLNSIEPFSKTELLTQIFSSEEVISKPISFTLDAEYIS
                     GGKSKRDSLSIGAYIQGQITIRTYDVSIENIGGVLNLVGNLLNEGNTVALFTTIEIIN
                     NNEVSSKLTSNSSQSGNLIKQLPLQSLPSPQYLGDLTENSPLPFSIPIDIKSNTENGK
                     YMTMLKINYKDDLRTEHGLVLSETVYYQPVEMDQTNASDNSSSSILGFTISNFMTTVI
                     VIFILSILIVITIIFVIVTIKKRKNKKSKLYKSLKYQDNDMKDFLGDKKDERG"
BASE COUNT          709 a          369 c          324 g          836 t
ORIGIN      
        1 caaacccttg tcatatcagt tattaaaaaa accggagcag aattatttcc atcactatta
       61 gaactgaatc ctgtattaag aatatatcca aggattacac ccgttcccaa accagaggtt
      121 gcacctaaaa taccaatcag tagcgcctct actaaaaaaa gagttaaaat atcaaaattt
      181 cgtgctccaa tagcttttaa agttcctatt tctctagttc tttctattac tgaagtatat
      241 agggttgtta ttattccaac cgctcctact attaatgata caattgcaat acttaagaga
      301 aaagcgctta atccactagt aaactcttta attgtctgaa ttagagcttt tactgtagta
      361 atacctatat cattaccata aagttttctt atttcagttt caatattatc tatattatca
      421 ggagagagag ctactactat tagcgcatca aattttccag atttatgaag aagtgtattg
      481 cctatttgtt cattaatgat aacagctttg tcaatgttag gatttcctga ttgctttatt
      541 attgctctaa taacaaaact ttttgtttcg atctctctgt ttcccgttat tggatccaca
      601 aaagaatata atacttgtac agtttgtccc aatgataaaa aaggtgtaga ttctccagga
      661 ggaaaggcga catcgctgga aacgatcatt gctgaaggat cattggatct cagcattgag
      721 ccctcttcat attctaaagt aggagcaata atacttagtt tttgtggatt taaagaaaat
      781 atcgcaaaat cttttgactc accttttgat tcaatagtta cttgagattg atatgaaggt
      841 ataacttctt ttactaatgg aagggagctt aatctctttt ctactgctga attgagggta
      901 atttttgcaa caggaggagg agctgcatta ttaccaccac caggacccgt tcctccattt
      961 tgtgtttgag gtgccgggtt tataaacata atattacctg caagattgct tgtttgttta
     1021 ttaaaaaact cggtaaagcc agcccccatt ccactaacgg cgatcataag actactaccc
     1081 accattacca ttacaatagt cagtaaggat tttgtttttc tctctttaat agcatcaagt
     1141 gataagagta ttatttcttt aaaatccatt tcgaatttct tgatccttta tgtgttttat
     1201 taaggtaaaa acatcataat aaattttatt ttttattaaa tgctttttaa cctctttcat
     1261 cttttttgtc acctaaaaaa tccttcatat cattatcttg atatttcaaa gatttatata
     1321 attttgattt tttgtttttt ctctttttga tagtaactat aacaaatatt attgtaataa
     1381 cgatcagaat ggataaaata aaaataacaa ttaccgtagt cataaaatta gatatagtaa
     1441 aacctaaaat actactacta ctattgtcac ttgcattagt ctgatccatt tctactggtt
     1501 ggtaatatac cgtttcgctt aaaaccaaac catgttctgt tcgcaaatca tctttataat
     1561 tgatttttaa cattgtcata tatttgccat tttctgtatt tgatttaata tcaataggaa
     1621 tactaaaagg taatggtgaa ttctctgtaa ggtctcctag atattgaggt gacggtaaac
     1681 tttgcaaagg tagttgtttt atcaaatttc cactctgaga agaatttgat gtaagtttag
     1741 atgacacttc attattattg ataatctcta tagtagtaaa aagtgctact gtattgccct
     1801 catttaacaa atttccaact aaatttaaaa ctcctcctat attttcgata gatacgtcgt
     1861 atgttcttat tgttatttgt ccttgtatgt aagctcctat agaaagggaa tctcttttag
     1921 actttcctcc tgaaatatat tcagcatcta atgtaaaaga aataggttta cttattactt
     1981 cttctgatga aaagatctgt gttaataatt ctgtttttga gaatggttct atagaattta
     2041 atgtccatct tgtgtcacca agaagtttta cagaatctga ttcggattta agagaaaaaa
     2101 caacattttt tagttcttca tttccattat tggaaacaat tattttagca ctttcaatca
     2161 ttccagctcg gagcaggagt gtatcctttt ttgtagtatt agaaattatt ctatcagtat
     2221 tggtattagt attattag
//
LOCUS       DATCMF010000325         2627 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_504365, whole genome shotgun sequence.
ACCESSION   DATCMF010000325 DATCMF010000000
VERSION     DATCMF010000325.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2627)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2627)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2627
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_504365"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..446
                     /locus_tag="VIL14_04075"
     CDS             <1..446
                     /locus_tag="VIL14_04075"
                     /inference="COORDINATES: protein motif:HMM:NF021098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2382 domain-containing protein"
                     /protein_id="HEY8522918.1"
                     /translation="ITVEDENNDLSSPSSSIDSKNNDIVIPLMSEELVVTKKEVIDEV
                     TITKEPTKETKTEQVQLMHEEINIERRPVNNLTDSANTSTTKEDIPPIESKTEIKIPL
                     KREEIEVTKKPYVKEEIVIKRKPVSETRRISEEIRTEQIVEPENI"
     gene            complement(744..1487)
                     /locus_tag="VIL14_04080"
     CDS             complement(744..1487)
                     /locus_tag="VIL14_04080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522919.1"
                     /translation="MKQQVNAFLLKSNKKCFILILLVPLLLTNFLPNTFQLILAQPNS
                     VENLKEYENSVFGLSIDHPSTWIIDEFEKRIKNDETVGMNNIVLFCPTPATLKSTPSN
                     QMNTNTTTTTLCKNAEKSFDIYVHNLPAGMTLEEFTNSKISSYKLELTDFKIIESNPS
                     VTIDNNPAYKLTYTYADKINDKKIQVMEIWTVINDDEDSDDLKDHVGKAYSLRYEAIP
                     IEFPIYLNTANNTISSFEFQNIDNDESDN"
     gene            complement(1649..1771)
                     /locus_tag="VIL14_04085"
     CDS             complement(1649..1771)
                     /locus_tag="VIL14_04085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522920.1"
                     /translation="MELENKDYNVKIEYSQSWNIREGDIELDDFNTQIAIFLRF"
BASE COUNT         1000 a          308 c          358 g          961 t
ORIGIN      
        1 aaatcacagt agaggatgaa aataatgatc tttcttctcc ttcttcttct atagatagca
       61 aaaataatga tatcgttatc cctcttatgt cagaagaact agttgttaca aaaaaagaag
      121 taatagatga agtaactatt actaaagaac caacaaagga aactaaaaca gaacaagttc
      181 aactcatgca tgaagaaata aatatagaaa gaagaccagt taataattta acagatagtg
      241 ctaatactag tacaacaaaa gaagatatac ctccgataga atcaaaaact gagataaaaa
      301 taccattaaa gagagaagaa atagaagtaa caaaaaaacc ttacgttaaa gaggaaatag
      361 taataaagcg aaaaccagta agtgaaacac gtcgaataag tgaggaaata agaacagagc
      421 agatagttga accagaaaat atataagaat aactatttac aacatttatc ttaaactata
      481 gaggtacaat aatataataa gttattatat taatcactat ttatgtattt gataatctac
      541 ctttaagaaa aaaatttata cattcataaa tttaatataa taaacaaaag agaagaaact
      601 tattgtagta gagcgagaca atgtagatgt ttattatcgg aagatggaat tgataaatca
      661 ataaaaatca agctatcaat caagaagggg cttagatttt ttattccttt ccttctttct
      721 ttttggatat aacttatatt attttaattg tcactttcat cattgtcaat attttgaaac
      781 tcaaacgaac ttattgtatt attagctgta ttgagataaa ttggaaactc tataggtata
      841 gcttcataac gtaatgaata tgctttacct acatgatctt ttaaatcatc actatcctca
      901 tcatcattaa taactgtcca tatttccatg acttgaattt ttttatcatt aattttatct
      961 gcatatgtat aagttaattt ataagcagga ttattatcaa tcgttacact tggattagat
     1021 tctataattt taaagtctgt taattccaat ttataggagg aaatcttgga attagtaaac
     1081 tcttctaatg tcattcctgc tggtaaatta tgaacatata tatcaaaact cttttcagca
     1141 tttttacata atgtagtagt agtagtattg gtattcattt gatttgatgg tgttgatttt
     1201 aatgtagcag gagttggaca aaatagtact atattattca taccaacagt ttcatcattt
     1261 tttattcttt tttcaaattc atcaattatc caagtagaag gatgatctat gcttaatcca
     1321 aatacagagt tttcatattc tttaagattt tctactgaat taggttgagc taaaattaat
     1381 tgaaatgtat taggcagaaa attagttaat aataatggaa ctaatagtat aagaatgaag
     1441 cattttttat ttgatttgag taaaaaagca tttacttgtt gtttcattaa ctttagttaa
     1501 ggaacaatag ttgttataga tctaacttta attttttctc tcaattagta tgtattattt
     1561 tacaaagagt tattttacag agttaaacat aatgactttt ggtatttctg taatactaga
     1621 tatttaacta agtagttatt tatggtgttt aaaaccgaag aaatattgca atttgtgtat
     1681 taaaatcatc tagttcaata tcaccttccc taatattcca actttgagag tattcaattt
     1741 taacattata atccttattt tccaattcca ttattttttc ttgagaaaaa gcaattggaa
     1801 tcagtggaga aaccaggatt attggactcg atatgaatat taaaaaagaa atttttattt
     1861 gttgatgtat tagaggtgag tatttaatta gcgattattt aataatttat tattttgtta
     1921 actttttgat atcgtatttt aattggattt ataagaatat caagagcttt taataattcg
     1981 ataattaaga ggtaagtctt ccactaattg ttagtagtaa tagattggca gattattaaa
     2041 gtaaatctaa aacgtcattt accttctttt ctggaaggta gtattatcaa aagtaattat
     2101 aacgtactat tccggtttgt attatttgca taattgaagt cgtatctggt ttggggttca
     2161 tagtagttaa taaatactat ttgaaatttg aaggatagaa gaatcataaa tctctaaaaa
     2221 atatatgctt tatctaaaat aagatcaaaa agaaaaagtt gagttattaa aatttaatta
     2281 cagttatatt tctaatttgt aaattatgta cgtagtgtaa taataaaact atacatgaaa
     2341 aaacttgtag gtctcattta aatttcattt actgattgct accaaaaaga gtataatatt
     2401 attccaatta aaataatcgg ttaaacaaaa aaatcgaatg aactttcaaa ttataaaata
     2461 aactctaatt agtttttttc taatatcata taggtgtatt cttctgtatc agtaggatct
     2521 atacgtaata ttaaagaaga attacatttt acacattttg tgttaagata tccctcttgg
     2581 catttgaata gattttcttc atcttctaga gatacatcat gtccact
//
LOCUS       DATCMF010000326         2427 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_504498, whole genome shotgun sequence.
ACCESSION   DATCMF010000326 DATCMF010000000
VERSION     DATCMF010000326.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2427)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2427)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2427
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_504498"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            23..544
                     /locus_tag="VIL14_04090"
     CDS             23..544
                     /locus_tag="VIL14_04090"
                     /inference="COORDINATES: protein motif:HMM:NF014225.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522921.1"
                     /translation="MHSTGEVACFGISFYDALSKAYLAAGYSLPISGSVLISVGGQKN
                     KVRLLPLVSLISSLGYQIMATEHTAEFLELNHFGPVQKAYKVSEPERKPNIADLLFER
                     KIDFIINIPSTSTIEKYVGMLYDEYLIRRKAVEMGVPVLTTIEGATSFIKTLEWLNSS
                     EPTIDSLRNFKQL"
     gene            complement(571..1365)
                     /locus_tag="VIL14_04095"
     CDS             complement(571..1365)
                     /locus_tag="VIL14_04095"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEY8522922.1"
                     /translation="MFKGTPKFSISVLHPEPVLLIDGKLNKEYRRFIVAADLHLGSET
                     HGIVNEPNLNSKIIFQNTGDKLISLIKSAKADGIILLGDIKSNVSRITRLEHDSIPPV
                     LTSLSRYAEVYIVPGNHDGLIRYIVPKNVNLISSSGMLLGDILFIHGHTMPSTIRSSV
                     ERIVMGHLHPILLKPNNIVNGQRVWIYMKVRKKAIFSDSVGLLEIIIMPSFDVGLSAP
                     FGHSRKKIISPILDRVVKNDDIEEMLYLTLDGSIVADLASLGDMPF"
     gene            complement(1465..1851)
                     /locus_tag="VIL14_04100"
     CDS             complement(1465..1851)
                     /locus_tag="VIL14_04100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8e"
                     /protein_id="HEY8522923.1"
                     /translation="MRKSIENLSGRKYTGGRKVAMRGRRKYEIDRYPNEAVLGDKSIK
                     TRRVRGNNLKVAVKFGAFVNLADPVLKKTTNAKILQVVKNPANKDYERRGVISKGALL
                     ETPSGMARVISRPGQDGCINAVLVKQ"
     gene            complement(1910..>2427)
                     /locus_tag="VIL14_04105"
     CDS             complement(1910..>2427)
                     /locus_tag="VIL14_04105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SMC-Scp complex subunit ScpB"
                     /protein_id="HEY8522924.1"
                     /translation="IKLFSQDEISARIEAALYSAGRPLSVDELIRASGTNSREKTLKI
                     ITELMKKTKSVFKAIEIDQLEDGSFVFQLKAEYIPVIRKFASQPLVSGGALKTLSYVT
                     YEQPVLSRRLVQIRGSQVYSHLKELERVGFIQHEKVGRLKIFKTSKKFQDYFGIEDVN
                     ALKGKLLTDKA"
BASE COUNT          678 a          518 c          433 g          798 t
ORIGIN      
        1 agatattgtt cttggcgtag agatgcattc aacaggggaa gtagcctgct ttggaataag
       61 cttttatgat gcactttcca aagcatattt ggcggctggt tactcactac caatatcagg
      121 atctgttcta attagtgtgg gaggtcagaa aaataaagtt agacttctac ctttggtttc
      181 actcatttct tcgctaggat atcaaattat ggcaacagaa cacaccgccg aattccttga
      241 gttgaaccat tttggaccag tgcaaaaggc ttacaaggta agcgagcccg aaagaaagcc
      301 taacatcgct gatctacttt ttgagcgaaa gattgacttc ataatcaata tcccttctac
      361 ctcaacaatt gaaaaatatg tcggtatgct ctatgatgaa tatttgataa ggagaaaggc
      421 tgtagaaatg ggtgtccctg tcttaaccac catagagggt gcaacttctt tcataaagac
      481 tcttgagtgg ctcaattctt cagagcccac tatagactca ctgagaaatt tcaagcagct
      541 ctaacttcta ggtttcgcgc ccaggatcaa ttaaaatggc atatctccca aagacgcaag
      601 atcggcaact atcgagccat cgagtgtcaa atatagcatt tcttcaatgt catcattctt
      661 tactactcgg tcaagtattg gtgaaataat cttttttcgg ctgtgcccaa atggtgcact
      721 aagacccaca tcaaaagagg gcattattat tatttccaac aatcccacac tatctgaaaa
      781 aattgccttt tttcgaacct tcatgtatat ccacaccctt tgtccgttca caatattatt
      841 tggttttaga agaatcggat gaagatgacc catcacgatt ctttccacag atgatcttat
      901 agttgaaggc atcgtatgcc cgtgtataaa caatatatct cctagaagca tcccgcttga
      961 agatataaga ttgacatttt ttggtactat gtatcgtatg agaccgtcat gatttcctgg
     1021 tacaatatac acctctgcgt accgcgaaag agaagtcaga actggtggta tgctgtcatg
     1081 ctctagtctt gttatccgag aaacattaga cttgatatct cccagtagaa ttattccatc
     1141 agccttagcc gactttatca aagaaatcaa tttatcacca gtattttgaa atatgatctt
     1201 agaattcagg ttaggttcat taacgatgcc gtgggtttca gatcctaaat gaaggtcggc
     1261 tgctacaata aatctcctat attctttatt taatttacca tcaattagta acacaggctc
     1321 tgggtgaagt acgcttattg aaaacttggg tgttcctttg aacaaggcac ttaatttaaa
     1381 gtatacgtat agaacaactt ctcgagcttt atttcatcgc aattctatag agtttggttt
     1441 acctaaatat tggcaattcc aaatttactg ctttactagg actgcgttaa tgcagccatc
     1501 ttgccctggc cttgagatta ctcttgccat accagacggt gtctcaagta gggcgccttt
     1561 gctaatcact cctcttcttt cataatcttt attcgcgggg tttttgacta cttgcaaaat
     1621 tttagcgttg gtcgttttct tcaatacagg atcggcaaga ttaacaaatg caccaaattt
     1681 caccgcgacc ttcaggttgt tacctctaac acgtcttgtt tttatagatt tatcgcctaa
     1741 cacagcttca ttaggatatc tgtcgatttc atactttcgt ctccccctca tagcgacttt
     1801 gcgcccacca gtatatttcc gccccgataa attttctatc gatttacgca tgagattcga
     1861 aatgcaagtt cgttattatt aatgcttctg tgattctttt gtcattcagt taggctttgt
     1921 cggttagaag ctttcccttc aacgcattaa cgtcttctat accaaaataa tcttgaaact
     1981 tcttacttgt cttgaatatt ttaagtcttc caactttttc gtgctggatg aaacctactc
     2041 gttcgagttc ttttaaatga gaatatacct gacttcccct gatttgaact agccttcttg
     2101 aaagaaccgg ttgttcatag gttacgtatg ataaggtctt gagtgctcct ccagaaacca
     2161 agggctggct agcaaatttt ctgataactg ggatatattc ggctttcagt tgaaatacaa
     2221 atgatccgtc ctctaactga tctatttcaa tcgccttaaa aacactctta gtttttttca
     2281 ttaactcagt aattatcttt aaagttttct ctcgtgaatt tgtcccactt gctctaataa
     2341 gttcgtccac cgaaagtggt ctgccggctg aataaagggc tgcctcaatc cgtgcgctaa
     2401 tttcatcttg agagaacaac ttgatta
//
LOCUS       DATCMF010000327         1634 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_438036, whole genome shotgun sequence.
ACCESSION   DATCMF010000327 DATCMF010000000
VERSION     DATCMF010000327.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1634)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1634)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1634
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_438036"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(212..982)
                     /locus_tag="VIL14_04110"
     CDS             complement(212..982)
                     /locus_tag="VIL14_04110"
                     /inference="COORDINATES: protein motif:HMM:NF014035.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HEY8522925.1"
                     /translation="MFDITYIVMFVAIGIGGGVVGSIIGVGGGIIFTPILTLMGLPPT
                     QVASTSLVAVAFTSISSATSYARQRRIKYAIASKLAVLSIPGAVLGAYLSTVISVDYF
                     KLFFSIVLIIAVGYILFSTRMKHSIAEKKTRLNPYPLIYCCAFAAGVVSSLFGVGGGI
                     IFVPILLILMRMKMYEAAPASQFIIMISAITGLAIHIMLGHPHYVYALSLASGAFAGG
                     AIGAELSAYLKERLLRILLSVTLLFVSTKLIFDVLYDK"
     gene            1182..>1634
                     /locus_tag="VIL14_04115"
     CDS             1182..>1634
                     /locus_tag="VIL14_04115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia channel protein"
                     /protein_id="HEY8522926.1"
                     /translation="MAIDTGDTTWMLISTGLVMLMTPALGFFEAGLIRSKNALSVIVQ
                     TFAGIAILSTLWFILGFSLVFAPSQGGIIGGYHWLFFNDVPMNESLDYAPTIPGVSFA
                     SFQMMFAVITPLLITGAFAERMKWSSFFVFIIAWSIFIYYPLAHWIWGR"
BASE COUNT          489 a          346 c          321 g          478 t
ORIGIN      
        1 tatcggatat cgaaccaggt tagcgaaaat caggcgcagg aatccatctt tattgtttgc
       61 cactagcaga cagcaagatt agtacttttt atcatcgtat tctatttgat tagcccgcaa
      121 aatagaaatc ccacctaata cccctaaaga tctacaatgt ttcaatactg cgtcttcgcc
      181 aataagaatt caaaattcgt ttcgcttcca attacttatc atagaggacg tcgaaaatta
      241 atttggttga tacgaagagt aacgtcactg aaagaagaat tcgtaataat cgctctttca
      301 agtaagctga aagttcagcc cctattgcac cacctgcaaa agccccgcta gccaaagaaa
      361 gagcatacac gtaatgagga tgaccgagca tgatatgaat agctagcccg gttatagcac
      421 tgatcatgat aataaattgg gaggccggcg ctgcttcgta cattttcata cgcatcaata
      481 ttagtaatat gggaacaaaa attattccgc caccaactcc aaataaactt gacaccactc
      541 ctgcagcaaa tgcacaacaa tatatcagtg gataggggtt tagtcgagtt tttttttccg
      601 ctatactatg tttcattcga gtactaaaca aaatgtagcc cactgcaata atcaatacaa
      661 tagaaaagaa caatttgaaa tagtctacag aaatcacggt tgaaagataa gcgcctagta
      721 ctgcacctgg tatcgacagg actgccaact tggatgcaat agcatatttt attcttcttt
      781 gccgcgcata tgaagttgca gatgaaatac tagtaaacgc tacggctact agactggtgc
      841 tcgcgacctg agttggaggg agacccatga gagtcaaaat gggagtgaaa attatcccgc
      901 ctcctacacc gattatagaa ccaactactc ctcctccaat acctatagcg acaaacatca
      961 cgatgtaggt tatgtcaaac atacgcgtgc cagtattatc aaggaaacaa ttaacatatt
     1021 aaactgtatg atggctttga catgtcaaat tatgaatcca aatatacctt ttcagacgat
     1081 cgaattcacg aagagggcca gtagacagaa ctttagagcg ctcagaaatg atgcgctgct
     1141 gcttttatat attccttgaa gtttcatctt gtcgtcatag gatggcaatt gacaccggtg
     1201 ataccacttg gatgcttatt tccacaggct tagtaatgct tatgacacca gctttgggtt
     1261 tctttgaggc tggcctaatt cgaagcaaga acgcgctttc tgtcatagtt caaacgtttg
     1321 ccggaattgc aatcctttca acattgtggt ttattcttgg tttttcattg gttttcgccc
     1381 cctctcaggg aggaattatc ggtggctatc attggctatt ttttaatgat gtcccaatga
     1441 acgagtcatt agactatgcg cctacgattc ccggtgtgag tttcgcgtct ttccaaatga
     1501 tgtttgcagt tattacacca cttcttatta ccggggcttt tgcggaaaga atgaaatggt
     1561 cttcattttt cgtatttatt atagcctgga gcattttcat ctattatcca ctagcgcatt
     1621 ggatatgggg acgg
//
LOCUS       DATCMF010000328         1676 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_504753, whole genome shotgun sequence.
ACCESSION   DATCMF010000328 DATCMF010000000
VERSION     DATCMF010000328.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1676)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1676)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1676
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_504753"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(149..640)
                     /locus_tag="VIL14_04120"
     CDS             complement(149..640)
                     /locus_tag="VIL14_04120"
                     /inference="COORDINATES: protein motif:HMM:NF013987.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522927.1"
                     /translation="MGNIRRSRGYSYEYSIVNRLNNRNWIAKRLGGSSVGLPDIIAVN
                     NNKAILLVIEAKSGTGESLYVPSDQIERCFSIVKMFRYYNYKYVILAFKFLRKKRIKI
                     KNELSYEKRKLVEYYKIIEPIWKKGKTPQIKCNYDGKTFLITSNGSIEINFANYKMHF
                     QKK"
     gene            754..1374
                     /locus_tag="VIL14_04125"
     CDS             754..1374
                     /locus_tag="VIL14_04125"
                     /inference="COORDINATES: protein motif:HMM:NF014099.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="HEY8522928.1"
                     /translation="MVSEKIKISLKSINDELQLIENRREQLIKESRDIIILCSQSIIS
                     LHQGHIQESQLKLDKAKDLYFSLKTLAQTDLLRYLSMSEQELVECSLLMSIVKNEALP
                     GLDEIGVSSQAYLFGILDCIGEIKRMVYDMVRLDRYDQAEYLFTVMQEIYSEIYPFSI
                     YDNIVSGIRKKLDICKILIENTRELITEEARRSIIIESLKKLDSSL"
     gene            1455..>1676
                     /locus_tag="VIL14_04130"
     CDS             1455..>1676
                     /locus_tag="VIL14_04130"
                     /inference="COORDINATES: protein motif:HMM:NF024938.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase family protein"
                     /protein_id="HEY8522929.1"
                     /translation="MRDSENVQKIINDVTQKGNKVITEEDAKSILSAYGIKVPAYSIV
                     TTESEAVSKAKEIGFPLVAKIVSDQILHKT"
BASE COUNT          604 a          223 c          239 g          610 t
ORIGIN      
        1 caatattttc aatttcatac atttgattcg atgaaatagc aatctctgac atctttttgc
       61 tgattttttc aactttcttc ttctgctgta cttgagtatg attcatgttg atatttatta
      121 agtggatttg tatttaattt gatatcgttt attttttttg aaaatgcatt ttataattag
      181 caaaattgat ttctattgat ccgttactag taattaaaaa tgttttgcca tcataattac
      241 attttatttg gggagttttt ccttttttcc atatcggctc aataatttta taatattcta
      301 caagttttct tttttcatag gataattcat tcttaatttt tattctcttt tttctaagaa
      361 acttaaatgc taaaattaca tatttataat tataatatct aaacatttta acaattgaaa
      421 aacatctttc tatttgatcg ctagggacat acaatgattc tcctgtccct gatttagctt
      481 caataactaa caaaatagct ttattgttat tgacagctat tatatctgga agaccaacac
      541 tggaacctcc tagtcttttg gctatccaat tacgattatt aagtctattt acaatggaat
      601 attcataact gtatcctctg cttctacgaa tgtttcccaa gtatttttct attcaataat
      661 taaactttta ttaattgttg gttttaaatg gcatttttcc ttatgatatt aactaattaa
      721 aactctatat tatgaacatt aatcaataga tagatggtat ctgagaaaat taagatttca
      781 cttaaatcta ttaatgatga attgcaatta atagaaaata gaagagaaca attaataaaa
      841 gaatccagag atattattat tttgtgcagc cagtcaatta tatctcttca ccaaggtcat
      901 atacaagaaa gtcaattaaa attagataaa gcaaaagatt tgtacttctc cctcaaaaca
      961 ctagctcaga cagatctttt aagatatttg tccatgtcag aacaagaatt ggtagaatgt
     1021 agtcttttga tgagtatagt aaaaaatgaa gctttaccgg gattagatga aattggggtt
     1081 tctagccaag catatctatt tggaatatta gattgtattg gtgaaataaa gagaatggtt
     1141 tatgatatgg ttagacttga cagatatgac caagcagaat atctttttac agtcatgcag
     1201 gaaatttata gcgaaattta tccattttct atatatgata acatagtaag tggtatccga
     1261 aagaaattgg atatatgtaa aatcttaatc gaaaatacta gggaattgat aacagaagaa
     1321 gctagacgat caatcataat tgaatcgtta aagaaattag atagcagtct ttaatcaata
     1381 taatacgttt gtaaataata ttgaataata agtaaagtta aatagaaact atactaactt
     1441 tttctccata tggtatgaga gatagtgaaa atgtccaaaa aataataaat gatgttactc
     1501 aaaaaggaaa taaggtaatt actgaagagg atgcaaaatc tatattgtca gcatatggga
     1561 taaaggtacc agcatattcc atcgtaacta ccgaatcaga agctgtatcc aaagcaaagg
     1621 aaattggctt tccacttgtt gcaaaaatag tatcagatca gatattacat aagaca
//
LOCUS       DATCMF010000329         2260 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_656224, whole genome shotgun sequence.
ACCESSION   DATCMF010000329 DATCMF010000000
VERSION     DATCMF010000329.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2260)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2260)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2260
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_656224"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            305..874
                     /locus_tag="VIL14_04135"
     CDS             305..874
                     /locus_tag="VIL14_04135"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015325.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEY8522930.1"
                     /translation="MANIAIIVGSVRQNRQGIKVARWMEEILKERGHIVYFIDPLELN
                     LPLLDKMYKEIIDPPENLKQLRNQIVEADGYMPITPEYNHSTSAAMKNTLDYFLEEYY
                     FKPSAIVSYSVGGFGGVNAVQHLRLIFAELGAPSISSSFSISKVQNVFDDAGKLRDQL
                     YEKRVLRFIEEFEWYIEAFKNQRVKGTPY"
     gene            1343..2161
                     /locus_tag="VIL14_04140"
     CDS             1343..2161
                     /locus_tag="VIL14_04140"
                     /inference="COORDINATES: protein motif:HMM:NF023568.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEY8522931.1"
                     /translation="MYIDLEEGFKIRYDEYGKDKQKHILFIHGLGSSPIVWRDIPQAL
                     SEHFHTIAVDLIGFGGSDKPELNYTISYFVQFIQNFLRQIGINDGDKITIIGHSLGGY
                     IAIEYAIKNREHIDKLVLIDTSGMLDRPTPLLEQYLDAAMETDPNLRYNKVKKVFENL
                     LAIPSRLLPIIVDIFISVIEKPGAKHAFESAFRNSTTTSINVEKLKQIKNIPCLIIWG
                     KKDNLIPVDHIHKFEQILKDAELLVIDDAGHSPFIEKTAIVYQKLLTFLLDNKF"
BASE COUNT          833 a          299 c          341 g          787 t
ORIGIN      
        1 ttgaaaataa tatgactatt aaaattatat taataatatc gtggaatagc tgtaatcaac
       61 acctcaaggt gtatattatc tgtatattat ctccttctct tcgtaataac ctaattagat
      121 atgaattgta attgtataag atgttctgta tcctttgtct tgtgatattt atttaaaata
      181 atctatatct atatttctac taccattcct ctatcccttt gtaaggataa agtaactttt
      241 ttctcttgaa tataattaat tttgatataa aaagttaaaa attatataga taaagaatag
      301 taagttggct aatatagcta ttatagttgg atcagtaagg cagaatcgtc aaggtattaa
      361 agtcgctcgt tggatggaag aaatattaaa agaaaggggt catatcgtat attttataga
      421 tccactggaa ctcaatttgc cacttttaga taaaatgtac aaggagatta tagatccacc
      481 agaaaatcta aaacaattga gaaatcaaat tgtcgaagca gatggttata tgcctatcac
      541 tccagaatat aatcatagta catctgcagc aatgaaaaat acacttgatt attttctaga
      601 ggaatattat tttaaacctt ctgcaattgt atcatattct gttggtgggt ttggaggagt
      661 taatgctgta caacatctta gattgatatt tgcagaatta ggggcaccat caatttcctc
      721 ctcgttttca atatccaaag ttcaaaatgt attcgatgat gctggtaaat taagagatca
      781 actctatgag aaaagagtac tacgatttat tgaagaattc gaatggtata tagaagcatt
      841 caaaaaccaa agagtcaaag gaacgccata ttagaacact attatggatt aaatgaattt
      901 ttgattcgag ttgagtagca cttgttgtgt caatttgatt aggggacaaa tatctagttt
      961 ctcataataa gccagtggaa agggatatag ttcaatcctt tgttatatgc tttgacaatc
     1021 aaccattaga acgttattta ctatatgtat tattaaatgt catactatca acataataag
     1081 aaaattattt ttgaactaat aaagacaaga atagattatt gattaaaatc acaacatacg
     1141 tttacaaata atgatagaca atttaataat ttaaatttgt cttataaatt atatttcatt
     1201 gtctaagata taatcttttt aaatatttga ttattgggat tcaataactc taatattaaa
     1261 taagaatatt cttttaagta gattttcttc tcttttacta atcaattata ttaaccaaat
     1321 tcctataatg tatattttat aaatgtacat tgatctagaa gaaggattta aaataagata
     1381 cgatgaatat ggaaaagata aacaaaaaca tatcctattt attcatggcc ttggttcgtc
     1441 tcctattgta tggagagata ttccacaagc attatcagaa cattttcata caatagctgt
     1501 tgatttaata ggatttggtg gaagcgataa acctgaatta aattatacaa taagctattt
     1561 tgttcaattc atacaaaact ttcttagaca gattggaata aacgatggag ataaaataac
     1621 aataataggt cattccttag gaggatatat agcaatagaa tatgcaataa agaacagaga
     1681 acatattgat aagcttgtat tgatagatac atccggcatg ttggatagac ctactccttt
     1741 actagaacaa tatcttgatg cagcgatgga aactgatcct aatttaagat acaataaagt
     1801 gaaaaaggta tttgaaaatt tattggcaat accatcaagg ttattaccaa ttattgtaga
     1861 tatttttatt tcagtaattg aaaaacctgg agcaaaacat gcctttgaat ctgctttccg
     1921 aaatagtaca acaacttcta ttaatgtaga gaagttaaag caaattaaaa atattccttg
     1981 tttaataata tggggtaaaa aagataatct tatacctgtc gatcacattc acaagtttga
     2041 acaaattctt aaagatgctg aacttttggt gattgatgat gccggtcatt ctccgtttat
     2101 agagaaaaca gctattgttt accagaagtt attgacattc ttattagata acaagttcta
     2161 aatagaaata agacttcagc acatgcatag cacactattg tgacatgtag ttgaaatcta
     2221 tctcagttat ttatcttctg ttctttaact attttgttct
//
LOCUS       DATCMF010000330         1693 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_571048, whole genome shotgun sequence.
ACCESSION   DATCMF010000330 DATCMF010000000
VERSION     DATCMF010000330.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1693)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1693)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1693
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_571048"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            246..812
                     /locus_tag="VIL14_04145"
     CDS             246..812
                     /locus_tag="VIL14_04145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522932.1"
                     /translation="MNKKSEFDGRSRGNNKLDETAIKETVKWSLTEYSVFVSKLVKKG
                     LSLFNEENLEKGWFSGININNQGEIDFTVPFTLENRPLDNNVIGAIGSFNLNDSQEYC
                     VIPETNNRFVEVLDNKGEIDPDFPLKDYQPHLNNISSNSKNSNKASIRKYDDAISIFI
                     KNEIQKGSFLDLFEIYVEEKINILNKFG"
BASE COUNT          668 a          215 c          229 g          581 t
ORIGIN      
        1 ataagcttaa tatcaaatgt cttaatgaag agtttatctt ctgcataatt aagttgcata
       61 attaagataa aatagagcat atataactat catataaatt aaatgtggcc taagaaggaa
      121 accataaaat tgataagttg cattatccat caataaatat gtagggtttt atttaattat
      181 tcatattttg ttgataaagt aaaacctctt agaatatata aaatgaatta gtaataatta
      241 caaggttgaa taaaaaatct gaatttgatg gcaggagtag aggaaacaac aaattagatg
      301 aaacagcaat taaggagacc gttaaatgga gtcttacaga atattcggta tttgttagca
      361 agctagtaaa aaagggccta agtttattta atgaagagaa tcttgaaaag ggttggttct
      421 ctggaatcaa tattaataat caaggagaga tagattttac tgttcctttc actctggaaa
      481 atagacctct tgataataac gttataggag caattggttc attcaatctt aatgattctc
      541 aagaatattg tgtcattcca gaaacaaata atagattcgt agaagtatta gataataaag
      601 gcgaaataga tccagacttt cctttaaaag attatcaacc acatttaaac aatatatctt
      661 ccaattctaa aaattctaat aaagcaagta taagaaagta tgatgatgct atctcaatat
      721 ttatcaaaaa tgaaattcaa aaaggttcat ttttagattt atttgaaata tatgttgaag
      781 agaaaatcaa tatcctaaat aaatttggtt aatataattt taatattgat agagaattct
      841 cactataatg agattagtaa gagcatttta tttgttatag aataaccata cggatattta
      901 cttaatgaga aacaatttac tttagacaac tatattaaat atctcaactg cttatgaatt
      961 ggaaatatat ataaaattca gcttattgag attttccaaa ataataaaag gaatatgata
     1021 aacaagttat tgaattaaat taataaaatt aggaatccat catgccaaat cattttgctt
     1081 agacaatccc ccactgagac cttaaacctc agtcattttt tatttttaat tttaataaca
     1141 aaaaattatt ttgtataata acaatagatt attgattaaa atctaaacat aaatttacaa
     1201 gcattgataa atacaaaatt atcttattaa ataataccga gtaggagtta aaaataacaa
     1261 cacaccgcaa atcgtgtagt tggcattgtc attgttgtca tagcctggac attctaccta
     1321 taagcccaat catatctatt caggctatga caattagtaa aattatatta ttattatttt
     1381 tttttgatta ccttagttta ctaattttga actattctaa aatctaaaat ctatgaagtg
     1441 ctacactgta ttcatcaata acatcataag cgaagccttc tagatgaggt tgcctcataa
     1501 gaaggctagg gtattactat caacaaacta atttttattt actatttatt tccaaaagct
     1561 atatgctagt ttaattaagc acttgccttg ataagtggac tccacaatct tactggttct
     1621 ttaatacaag gaagtcatta gactcaacaa atgctcgatt tttatagtac ataaaatatt
     1681 gtatatgatg tta
//
LOCUS       DATCMF010000331         1781 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_505140, whole genome shotgun sequence.
ACCESSION   DATCMF010000331 DATCMF010000000
VERSION     DATCMF010000331.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1781)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1781)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1781
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_505140"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            187..297
                     /locus_tag="VIL14_04150"
     CDS             187..297
                     /locus_tag="VIL14_04150"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEY8522933.1"
                     /translation="MLENKVAVVTGASSGIGYATSLKLSKAGIRVAGLWS"
     gene            complement(320..1537)
                     /locus_tag="VIL14_04155"
     CDS             complement(320..1537)
                     /locus_tag="VIL14_04155"
                     /inference="COORDINATES: protein motif:HMM:NF012981.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase family protein"
                     /protein_id="HEY8522934.1"
                     /translation="MARRIAENKNTSHEGINQNSIYNTRIRTDISNSASIGLKQEKMK
                     KRNVITALVVNPTSSGGSTGKDWDTQFIKIKEAFGEEPEIVFTQKPGDGIFLTRDLLK
                     KGFKRIVAIGGDGTINEVANGFFIPVEGRARRKNATAINNDNIDVDVHESSKNEDQNE
                     RPFPKSPVLKPISSEAIMGLLPSGTRNVLAKSLDFPEDIVQCCNNFVVGKSKKIDVIS
                     ATVTPTTNDEDSDRRPKPITRIFLNAAELGVAAEIIDRSKKVRNKVKSRLVSTVTSLA
                     LTLPYYESNLCEVSIDDGRENILTKMTMCVIANGRYLGGGFMAAPKANVSDGLLDIVI
                     LKDSGSLKMLDDLVNIKDGDYANKPDILYRQAKKVSIKSKERDVTVAIDGEPIGILPA
                     TFEILKRSLTIRM"
BASE COUNT          524 a          337 c          278 g          642 t
ORIGIN      
        1 gaatatgagg ccgagatgac acaactagat ctaaactatt gcagtgccgc ttatgaccgt
       61 gttacctgtg acaaaatata caagttagga gtgtaactag ctagagtttt ttttggtctt
      121 tctaatatct ttttatcata tatccataaa taagcgattt ttttaatcat attggtatct
      181 ttttacatgc tggaaaataa ggttgcagta gtcactgggg caagtagtgg tataggatat
      241 gccacgtctt taaaattatc aaaagctggt ataagagtag cagggctatg gtcctaataa
      301 agtagtattc tatcctccac tacattctga tagttaaaga tctcttcaaa atttcaaatg
      361 ttgctggtag aatacctatt ggttcaccat caattgctac agtaacgtct ctttcctttg
      421 actttattga aacttttttt gcttgtctat atagtatgtc aggtttatta gcatagtcac
      481 catccttgat attaacaaga tcgtctaaca tcttgaggct acctgaatct tttaaaatga
      541 ctatatcaag caatccatca gaaacattag ctttaggtgc cgccataaat ccacctccaa
      601 gatatctacc atttgcaatc acacacattg tcatttttgt tagaatattt tctctaccat
      661 catctataga tacctcacac agattgcttt cgtaataagg tagagttaga gctaggcttg
      721 taactgtaga tacaagacga ctcttaacct tatttctaac cttttttgac ctatcaataa
      781 tttcagctgc aactcccagt tcagcagcat tgagaaatat tcgtgttata ggcttcggtc
      841 tcctgtctga atcttcatca ttagtagtag gagttactgt agcactgata acatctattt
      901 tctttgattt gccaactaca aaattattgc agcactgaac aatatcttct ggaaaatcca
      961 aagatttagc taatacgttt cttgtacctg agggaagtaa tcccataatc gcttctgaac
     1021 ttataggttt taatacggga gatttaggaa atggtctttc attctgatct tcgtttttag
     1081 atgactcatg aacatcaaca tcgatattgt cattatttat tgcagttgca ttttttcttc
     1141 ttgctcggcc ttctacggga ataaagaatc catttgcaac ctcatttatg gttccatcgc
     1201 ctcctattgc aacaatcctt ttaaaaccct tctttagcaa atcccttgtc agaaaaattc
     1261 cgtcaccggg cttctgagta aaaacaattt cgggttcctc accaaatgct tctttgattt
     1321 tgataaactg agtatcccaa tctttgccag ttgagccacc tgaagaagtg ggattgacaa
     1381 ccaatgcagt aatcacgttt ctttttttca tcttttcttg ttttaatcca atagaagcag
     1441 aatttgatat atcagtcctt attcttgtat tatagataga attttgattt attccttcgt
     1501 gactagtatt cttattttca gctattcttc ttgccaacca ttatatatac agaataacat
     1561 tcttcttaac tgtagtataa gcatattaat atcaatactt gattattgtg tttaatattt
     1621 ctatttcgtc ttactttgtt aactttattc gttttgccaa accagccaga ggcacggttt
     1681 tctaaaagat acatttcatc aaaatatgag catattttct tgtattcttc aaattcaggc
     1741 taagaaagta tactcgcaaa ggaatcgagt aatggaaagg a
//
LOCUS       DATCMF010000332         2687 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_571229, whole genome shotgun sequence.
ACCESSION   DATCMF010000332 DATCMF010000000
VERSION     DATCMF010000332.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2687)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2687)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2687
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_571229"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            300..470
                     /locus_tag="VIL14_04160"
     CDS             300..470
                     /locus_tag="VIL14_04160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522935.1"
                     /translation="MKDEPFERVLKSFLDEKSLIKLLRVLEDENIEKESLKIENKFRK
                     IVSKDIVNNFYN"
     gene            557..1741
                     /gene="mpgS"
                     /locus_tag="VIL14_04165"
     CDS             557..1741
                     /gene="mpgS"
                     /locus_tag="VIL14_04165"
                     /EC_number="2.4.1.217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050504 - mannosyl-3-phosphoglycerate
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mannosyl-3-phosphoglycerate synthase"
                     /protein_id="HEY8522936.1"
                     /translation="MKLDLPRFTERFGSISLHGVQRVFELDSGSDKGKKVSENITGVG
                     NEQISEIESKMAIVIPIKNERLKLLEGVLSGIPHDCMTIIVSNSPRQPVDRYKLEKES
                     LQQFNRFANKNALIIHQRDEGLAETLREVNYNELIGSDQLIRNGKAEGMVLGMLLAKM
                     AHKEYVGFIDGDNYVPGAVNEYVKIFASGIAMSDTPYKMIRVSWIYKPKISETGIYFS
                     KWGRVSEITNYYLNSLVSYYTGFETEVMRTGNSGEHCMSLKLAELLNFSSGFSVETYE
                     IVNLLEQFGGILPTENQDAMDKGVEVMQVETRNPHFHEDKGEAHLKEMINGSLGCIYH
                     SRICHPKLQEKILEELKNKSTLDNNGAPPMLEKINPFKDVDIKTFDKKLHDKATSLIH
                     WN"
     gene            complement(1811..>2687)
                     /locus_tag="VIL14_04170"
     CDS             complement(1811..>2687)
                     /locus_tag="VIL14_04170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="elongation factor EF-2"
                     /protein_id="HEY8522937.1"
                     /translation="HLEIATSLLQEAGLSITTSQPLINYRETIRSKGGPIMSKSPNRH
                     NKIFMRVEPLREDIIEMIKTGHIKEDMDKKELAKILREKGWNADEARNVSAIDPSGNM
                     LIDETKGVQFIQESMDSIKSGFDDVIHSGALAHETLRGVKFVLNHFVPHEDPAHRGLA
                     QLMPATRRSMLGSMLIADPVLLEPILGIEVKCPQEQIGTVAGILSGKRGKLLNVDQKG
                     VIAIMQGEVPASETFDLSEVMRGGTAGKAMWSTYFKSWQAVPQSVIRTLIADVRKRKG
                     LNPEPPSPDEFIDKE"
BASE COUNT          928 a          420 c          458 g          881 t
ORIGIN      
        1 ttaagcgctg gaaccacaac tatatcgata ttggcatcgc ttcaaactgt atttattgtt
       61 ataagtattc ctgcattact gattgcacca tttataattg ctaagacttt taaaaatcga
      121 atcatttaat aattatttaa tatagttcat tgatttttta catttataaa aatatatatt
      181 catttagagt ttctatgtag taaaaaacta gagcaatttt agttaaaaaa aaaagggaaa
      241 attctagtgt attcacattg aatatctgtt aaataaaata gtatcaattc tttaataact
      301 tgaaggacga accattcgaa agggtattaa aatcattcct cgatgaaaaa tcgttgatta
      361 aactacttag ggtacttgag gatgaaaata tagaaaaaga atctctaaaa atagaaaata
      421 aatttagaaa aatagtatcg aaagacatag taaataattt ctacaattga aataattact
      481 attataatat taatctgatt taaatatatg taagtctcgt tttaatttgg tttttactaa
      541 aaagggagag aaatatatga aattagattt acctcgattt actgaaagat ttggatcgat
      601 aagccttcat ggtgtccagc gggtctttga gcttgattct ggttcagata aaggaaaaaa
      661 agtgtcagaa aatattaccg gagttgggaa tgaacaaatt tcagagatag aaagtaagat
      721 ggccatagtg attcccatca aaaacgaaag attgaagctc ttagaggggg ttttaagtgg
      781 aattcctcat gattgtatga ctattatagt ttcaaatagt cctcgccaac ccgttgatag
      841 atacaaatta gagaaagagt cacttcaaca atttaataga tttgctaaca aaaacgcctt
      901 aattattcat cagcgagatg aaggtcttgc tgagacccta agagaagtta attacaatga
      961 gttaataggt tctgatcaac tcattagaaa cggcaaggca gaaggaatgg tattaggaat
     1021 gcttcttgct aaaatggctc ataaagaata tgtcggcttc attgatggag ataattacgt
     1081 acctggtgct gtcaatgaat atgtaaaaat ttttgcatct ggcattgcaa tgtctgatac
     1141 accttataag atgataagag tttcttggat ttataaaccc aagatttctg aaaccggaat
     1201 ttatttttca aaatggggta gagtatctga aattactaat tactatttaa attctcttgt
     1261 ttcatattat acaggatttg aaactgaagt aatgcgaaca ggaaattcag gtgaacattg
     1321 tatgtctctc aaacttgcgg aattacttaa tttttcttca gggttctctg tcgaaactta
     1381 tgaaattgtg aatctacttg aacaatttgg tggaatatta cctacagaaa atcaagatgc
     1441 gatggataaa ggtgtagagg taatgcaagt tgaaactaga aatccccact ttcatgagga
     1501 caaaggagaa gcacatttaa aagagatgat taatggatca ctaggatgta tatatcatag
     1561 tagaatatgt catccaaagt tacaagaaaa gatacttgaa gaactaaaaa ataaatcaac
     1621 actagataat aatggagctc cgcctatgtt agaaaaaata aaccccttta aagacgtaga
     1681 cataaaaact tttgataaaa aattacatga caaagcaact agtttgatac attggaatta
     1741 actcgattgt atcacattcg ttaataccac atataaaaat aaaaataaaa aataagtaaa
     1801 ttttgttata ttattctttg tcaataaatt catcaggact gggaggttct ggattaagcc
     1861 cttttctttt gcgtacgtca gcaataagtg ttcgtataac agactgaggc actgcttgcc
     1921 aacttttaaa gtaagtactc cacattgctt tacctgctgt tccgccacgc ataacctctg
     1981 ataagtcaaa agtttcagaa gctggaactt caccttgcat aatagctata actccttttt
     2041 ggtctacgtt taataattta cctcgttttc cggataaaat tcctgctact gtacctattt
     2101 gctcttgagg acattttact tcaattccta gtataggttc caaaagtact ggatctgcga
     2161 ttaacataga acccagcatc gatcttctgg ttgcaggcat caattgtgct aatcctctat
     2221 gagcagggtc ttcgtgtggc acaaaatggt taagaacaaa tttaacacct cttagagtct
     2281 catgtgctaa ggctcctgaa tgaatcacgt cgtcaaatcc tgatttgata gagtccatcg
     2341 attcttgaat aaattgaaca cctttagttt catcgatcaa catatttcct gatggatcaa
     2401 tagcgctaac attcctcgct tcatctgcat tccatccttt ttctctaagg attttagcta
     2461 attccttttt atccatatct tcctttatgt gtccggtttt aatcatttca ataatatctt
     2521 ctctaagggg ttctactcgc atgaatatct tattatgtct attaggagat ttactcatga
     2581 taggtccgcc tttggaacga atcgtctctc tataatttat taaaggttga gaagtagtta
     2641 tagatagacc tgcttcttgt aacagtgatg tagcgatctc aagatgt
//
LOCUS       DATCMF010000333         4308 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_656899, whole genome shotgun sequence.
ACCESSION   DATCMF010000333 DATCMF010000000
VERSION     DATCMF010000333.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4308)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4308)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4308
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_656899"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            58..216
                     /locus_tag="VIL14_04175"
     CDS             58..216
                     /locus_tag="VIL14_04175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522938.1"
                     /translation="MNNNKKLIGGEIIGIGSDFIVISKEGKRFLIEVNFESLKELKFS
                     TTPYGSQI"
     gene            286..2223
                     /locus_tag="VIL14_04180"
     CDS             286..2223
                     /locus_tag="VIL14_04180"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF003218.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase VI subunit B"
                     /protein_id="HEY8522939.1"
                     /translation="MKINSKLELKYQKKDPDNNSPHHLHKSPKVKYNKKAESEFFVDN
                     SALAGFTGERILYMAIRELIENSLDSCEVHHILPSISVSIKQTDEGNDLWTISCQDNG
                     IGINSEKVPVAVCSFLTSGKYVEKQQRGLFGVGLKMIAAFSTKDTDKPIKVWSKSIDE
                     DSEYYYELRTDITTNKPIVLNKKIVQKMENIIKGKHGFKIVATLRARLSPITKNKIYD
                     YISQTSIVNPYSNLIFENDDGKIIFERRTDIMPDPAKEVLPHPADMDLQTLKKAILNF
                     SKEKASLQTILSSSFQKLSIEKAREIIRSSEIGNKFANLFSESDLIKVVNVCKQMKFQ
                     TPHIDHLSPIGEKILTTGMMSEYVIIHNRDHLKSVNPREEGNNQNVRVLKPALTSYSS
                     RSIVINNRPTIIECGIAYGGDINSFKLYRFANKIPLLYDEGSDVAREVVTEVGINKMG
                     ITKKEAKEQFANDQSSRSDRAVELLPLHIFFHICSTKIPYKSAGKESIASEGEMKKYM
                     KFCLSDLYRKVSAQIRRDLKIKDAENRLKLYKYYIPLIVDAVSDSIKVDRTKLSELFV
                     EIAEKHVKKEITPVETILKENDEINNKSKKMIAVKEKYNNTENKNTKINEKDAAKNLS
                     KKKVFPGKKIEKLTLDDFNRR"
     gene            2229..3335
                     /locus_tag="VIL14_04185"
     CDS             2229..3335
                     /locus_tag="VIL14_04185"
                     /inference="COORDINATES: protein motif:HMM:NF044723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522940.1"
                     /translation="MSTKNKRHKEIIKKIQNIMKEISNDVLIGKKMPSLEISKVGYDN
                     TFWSEKKKMLTLGEKKVIVSPNSTKKIPTFSQYLVMANAIRKLVDEEMESTIRGMYYA
                     TLSTVGDEKNKEKFWRSQEDSDDAIKAVELITGIPREEFSVTSKPKGMISGPITLNVG
                     GDIIDCNLGSRATSQLIPTNISDVEIVDVKADLVMVVEKDTVLNNIRKSGFIQKYNAI
                     LMTGSGEPDRATRMMVKTLNEKWKKPVVIFADADPWGLGIALRYKIGSESLSYDSDRL
                     VAPNAKVLGMMFSDIYDYNIPEVARLSVTAEDINRANDMKKKPWLQGKQWQKELNLFL
                     KKKEKCELDAFFKHGFKYLAEQYLPKKLREAGVI"
     gene            3442..3630
                     /locus_tag="VIL14_04190"
     CDS             3442..3630
                     /locus_tag="VIL14_04190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-domain-containing protein"
                     /protein_id="HEY8522941.1"
                     /translation="MLEAKCPKCDKTALVNDEMTEVHCSYCLTKLPYEEYIEIMKEKA
                     LNMGIEFQNNWDKNPYSM"
     gene            complement(3663..>4308)
                     /locus_tag="VIL14_04195"
     CDS             complement(3663..>4308)
                     /locus_tag="VIL14_04195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018071.1"
                     /note="eIF-2G; forms a ternary complex with GTP and
                     initiator tRNA in the early steps of protein synthesis;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="translation initiation factor IF-2 subunit
                     gamma"
                     /protein_id="HEY8522942.1"
                     /translation="ALEKNIHTPQRNRQTFPIMHVLRSFDINKPGMPVASIHGGAIGG
                     ALIQGEFNVNDEIEMRPGTLNSKGKYSPIYSKISSLGTGAGLVSNVKPGGLVSIGTIL
                     DPSLVKSDSLIGSVVGKPGTLPQDIYDVSIDTYLFDTAVGTQEPVKVDPIKKNEHLRI
                     NIGTLATTALVTNTKENKIEINLKKPVCIIQSSRVALSRKIGERWRLIGSGITK"
BASE COUNT         1644 a          613 c          742 g         1309 t
ORIGIN      
        1 atcttgaaat ttaaaaaaat tataataata gattacgcaa tataataaat aacaataatg
       61 aacaacaata aaaagcttat tggaggggaa atcatcggaa taggtagtga ttttatcgtt
      121 atctctaaag aaggaaaaag atttttaatt gaagtgaatt ttgaatcttt aaaagaactt
      181 aaattttcaa ctacgcccta tggatcacaa atataataaa tgctaaaggc taattttttt
      241 aatcctaaaa gataaattta gttattttat aaaagtcata tcctgttgaa aataaattcc
      301 aaattagaac tcaaatatca aaagaaagat ccagataata attctcctca tcatcttcat
      361 aaaagtccta aagtcaaata taataaaaaa gctgaatcag agttttttgt agataattct
      421 gctttagctg gatttacggg ggaacgtatt ttgtatatgg caataagaga attgatagag
      481 aattctctag attcttgtga ggttcatcat attcttccga gtatttctgt atcaataaaa
      541 caaactgatg aaggcaatga cctttggacg atctcttgtc aagacaatgg gataggtatc
      601 aattcagaaa aggtaccagt ggctgtctgt tcttttctca cctctggtaa atatgttgaa
      661 aaacaacaaa gagggttatt cggagtaggc cttaaaatga ttgcggcatt ttctacaaag
      721 gatacagaca aacctataaa agtatggtca aaatctattg atgaagattc agaatattat
      781 tatgaattgc gaacagatat tacaacaaat aaacctatag tcttaaacaa aaaaattgta
      841 caaaaaatgg aaaatattat caaaggcaaa catggtttta aaattgttgc tacattaaga
      901 gcaagattat ctcctataac taaaaataag atatatgatt atatttctca aactagcatt
      961 gtaaatccat attcaaactt aatttttgaa aatgacgatg gcaaaataat ctttgaaagg
     1021 agaacagata ttatgcctga tcctgcaaaa gaagtacttc ctcatcctgc tgatatggat
     1081 ttacaaacgt tgaaaaaggc aatattaaat ttctccaagg aaaaagcttc tcttcaaact
     1141 attttatcta gttcatttca aaaactttct attgaaaagg cacgtgaaat tatacgttcc
     1201 tcggaaatag gtaataaatt cgctaatctt ttttcagaaa gtgatctcat caaagtagtg
     1261 aacgtttgta aacagatgaa atttcagaca cctcatattg accatttaag tccaataggt
     1321 gaaaagatat taacgacagg gatgatgtca gaatacgtta ttattcacaa ccgagatcac
     1381 cttaaatctg taaatcctag agaagaagga aacaatcaaa atgttagagt tttaaaacct
     1441 gctcttactt cttattcttc acgatctatt gtaattaata ataggccaac aattattgaa
     1501 tgtggaattg cctatggtgg agatataaat tctttcaagt tatacagatt tgcaaataag
     1561 attcccttac tctatgatga gggctcagat gttgcaagag aagtagtaac ggaagttgga
     1621 attaataaaa tgggtattac taaaaaggag gcaaaagagc aatttgcaaa tgatcaaagt
     1681 agcagatccg atagggcggt ggaacttctt cctctgcata tatttttcca tatatgttct
     1741 acaaaaatac cttataaaag tgcaggaaag gaaagtattg catctgaagg tgaaatgaaa
     1801 aaatacatga aattctgtct atcagacctt tatagaaaag ttagtgcaca gatacgacgc
     1861 gatttaaaaa tcaaagatgc tgaaaataga ttaaaattgt acaaatatta tattccatta
     1921 attgtagatg ctgtatctga ttcaataaag gttgatcgta ctaagctttc agaactattt
     1981 gttgaaatag ctgaaaaaca cgtcaaaaaa gagataaccc ctgtagagac aatcctgaag
     2041 gaaaatgatg aaataaataa taaatcaaaa aaaatgatag cagttaaaga aaagtataat
     2101 aatacagaaa ataaaaatac gaagatcaat gagaaagacg ctgctaagaa tttatccaaa
     2161 aaaaaagttt ttccaggaaa aaaaatagaa aaattaaccc ttgatgactt taataggaga
     2221 taaagttatt gtccactaaa aataaaagac ataaagaaat tatcaaaaaa attcagaata
     2281 taatgaaaga aatttctaat gatgtattga ttggaaaaaa aatgccgtct ttagaaattt
     2341 ccaaagtcgg atatgataat actttttggt cagaaaaaaa gaagatgtta acactagggg
     2401 aaaaaaaggt tatcgtaagt cctaattcta caaaaaaaat accaacattt tctcaatatt
     2461 tagttatggc taatgcaatt cgaaagttag ttgatgaaga aatggaaagt actattcgag
     2521 gtatgtatta tgcaacttta agtactgtag gagatgaaaa aaataaagaa aagttttgga
     2581 gaagtcaaga ggattctgat gacgctatca aagcagtaga attaattacg ggaattccta
     2641 gagaggaatt ttcagtcacg tctaaaccaa aaggaatgat ttctggtcca attacgttaa
     2701 atgttggtgg agacattatt gattgtaatc ttggaagcag ggcaacatct cagttaattc
     2761 caaccaatat ttctgatgtc gaaatagtag acgttaaagc agaccttgtt atggttgtag
     2821 aaaaagatac tgtattaaat aatataagaa aatccggatt catccaaaaa tataatgcaa
     2881 tactcatgac gggttcaggg gagccggata gagcaacaag aatgatggta aaaacattaa
     2941 atgagaaatg gaaaaaacct gtagtaatat ttgcagatgc cgacccttgg ggtttaggta
     3001 tagctttacg ctataaaatt gggagtgaat cattaagtta tgatagcgac agattggttg
     3061 caccgaatgc aaaagtacta ggaatgatgt tttcagacat atatgattac aatattccgg
     3121 aagtagcccg gttatccgtc actgcagaag atatcaatag agcaaatgat atgaagaaga
     3181 agccatggtt gcaaggtaaa caatggcaaa aagaattaaa tttatttttg aaaaaaaagg
     3241 aaaagtgcga attagatgca ttttttaagc atgggtttaa gtacttggcg gaacaatacc
     3301 tcccaaagaa acttagagaa gcaggcgtaa tctaacttgt tatctttatg aaatatgtga
     3361 tgtttaatat ccatccttga tagcaattcg atgaaaaaat ctttataaac atttttatga
     3421 aattaaatca cttttcataa tatgcttgag gctaagtgtc ctaaatgtga taaaactgcg
     3481 ttggttaacg atgaaatgac tgaagttcat tgttcttatt gtttaacaaa acttccatat
     3541 gaagaatata tagaaataat gaaagaaaag gcacttaata tgggtataga attccagaat
     3601 aattgggata aaaatcctta ctctatgtag ctattatcag aaaaaatttg tccgataaaa
     3661 aattatttcg ttatccctga gcctattaga cgccatcttt ctccaatctt tctacttaaa
     3721 gcaactctgc tactctgtat aatacaaact ggttttttta ggttgatttc tattttattt
     3781 tctttggtat ttgtaactaa agcagtggta gctaaagtcc caatatttat tcgaagatgt
     3841 tcattctttt taatggggtc aactttgact ggttcctgtg ttccaactgc agtatcgaaa
     3901 agatatgtat ctattgaaac gtcatagatg tcttgaggca atgtgccagg tttacctact
     3961 acagaaccaa taagtgaatc actttttact aaagacggat ctaaaatcgt gccgatagat
     4021 actaatcctc ctggcttgac attactaact aacccagcac ctgttcctaa actcgaaatt
     4081 ttggaataaa taggagaata tttccctttg ctattaagag ttccaggtct catttcaatc
     4141 tcatcattta cgttaaattc accttgaatt aaagctccac caatcgctcc accatgaatt
     4201 gaagcaacag gcattcctgg cttgttaata tcaaaggaac gtaaaacatg cattatggga
     4261 aacgtttgtc tatttctctg cggagtatgg atgttttttt ctagggct
//
LOCUS       DATCMF010000334         1622 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_373730, whole genome shotgun sequence.
ACCESSION   DATCMF010000334 DATCMF010000000
VERSION     DATCMF010000334.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1622)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1622)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1622
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_373730"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(125..>1622)
                     /gene="glnA"
                     /locus_tag="VIL14_04200"
     CDS             complement(125..>1622)
                     /gene="glnA"
                     /locus_tag="VIL14_04200"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR00653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004356 - glutamine synthetase activity
                     [Evidence IEA];
                     GO_process: GO:0006542 - glutamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HEY8522943.1"
                     /translation="LDQNKKQIEILNELERAKIKWVRLNFCDPFGFLQQISVHSDEIT
                     EESFKNGIPRLDGSSIKGFKEIQESDMILKPDPSTFAILPDYFDKDHHNKDNTYASRG
                     ARMFVDIYEGFNNTRYSRDPRFIAQKADQIAKNKGFEKSYWGPELEFFVFNKITLLPT
                     PMSAVNCSGGTGYSIESAEAPWGQGNGSGGGYTIPFRSGYFPAPPADSLTDFRDEVSD
                     ILHQNFGIKVEAHHHEVATAGQCEIQLSFDQLVPMADQVITYKKTVKETAAKRGMVAN
                     FMPKPVALDNGSGMHVSQSLWARHKNEDVNLFYDAADEYAELSQTALYYIGGLIEHAE
                     ALCALTNPTTNSYRRLVPGYEAPINVAWSKMNRSVSIRIPAHFRKMKRRKRIEYRTPD
                     PSSNIYLVEAALLLAGLNGINKKSSTPDPVDEDIYKLSENKKREYGIKKLPTSLQDAI
                     ESLECDTEFLKPAFTNDFIDMYCDIKKDEHAKVASIPSPREFYMYGNV"
BASE COUNT          465 a          313 c          256 g          588 t
ORIGIN      
        1 cagtctattt agatcaaagt aactttggga tgattcagct gctcttataa tatgtctttt
       61 aagttccaat atatcttttg aatatggcat gatatgtatc cgactctaga aatataacaa
      121 tttatcacac atttccatac atatagaatt ctcttggaga gggtattgat gcaacttttg
      181 catgttcatc ttttttaata tcgcaataca tatcgataaa atcatttgta aatgccggtt
      241 ttaaaaattc tgtgtcacat tctaatgact ctatagcatc ttgtaaagat gtaggtaatt
      301 ttttgattcc atattctctt ttcttgtttt ctgagagttt atagatatct tcatctaccg
      361 gatctggtgt tgaagatttt ttattaatac catttagacc tgcaagtaat aatgctgcct
      421 caacaagata gatatttgag ctaggatcag gtgttctgta ttctatcctc tttcttcttt
      481 tcattttcct aaaatgagca ggaatcctga tactgaccga tctgttcatc ttgctccatg
      541 caacatttat tggagcctca tatcctggca ctaatctcct ataggaattc gttgtaggat
      601 tagttaaagc acatagtgcc tcagcatgtt ctattaaccc tccaatatag taaagtgctg
      661 tttgacttaa ctctgcatat tcgtctgcag catcataaaa caagtttacg tcttcatttt
      721 tatgccttgc ccatagactt tgacttacat gcatcccaga tccgttatct agtgcaactg
      781 gttttggcat aaaatttgca accatcccac gtttcgcagc agtttctttt actgtttttt
      841 tgtatgtaat tacttgatca gccataggaa caagctggtc aaatgacagt tgtatttcac
      901 attgtccagc agtagctact tcgtggtgat gggcttcaac ctttattcca aaattttgat
      961 gtaatatgtc agatacttca tccctaaaat ctgttaaact atctgcaggt ggagcaggaa
     1021 aatagccact tctaaatgga attgtgtatc ctccaccact tccattacct tggccccaag
     1081 gagcctcagc agattcaata gaatatccag taccaccaga gcaattaact gctgacatag
     1141 gagttggcaa taatgttatt ttgttaaaca caaaaaattc taattctgga ccccaatagc
     1201 ttttctcgaa acctttattc tttgcaattt gatcagcttt ctgcgcaata aaccgcggat
     1261 ctcttgagta acgtgtatta ttaaaacctt catagatatc cacaaacatg cgagcacctc
     1321 gtgaggcata ggtgttatct ttattgtgat gatctttatc aaaataatcc ggcaaaatag
     1381 caaaggtaga tggatctggt ttgagtatca tgtctgattc ttgaatctct ttgaagcctt
     1441 taatagaact tccatctagt ctaggaatac catttttaaa tgattcttct gttatttcgt
     1501 cactgtggac acttatttgt tgtaaaaaac caaatggatc acaaaaattc aatctaaccc
     1561 atttaatttt tgctcgttcc aattcattta atatttcaat ttgtttttta ttttgatcta
     1621 ag
//
LOCUS       DATCMF010000335         1582 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_505903, whole genome shotgun sequence.
ACCESSION   DATCMF010000335 DATCMF010000000
VERSION     DATCMF010000335.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1582)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1582)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1582
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_505903"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            182..313
                     /locus_tag="VIL14_04205"
     CDS             182..313
                     /locus_tag="VIL14_04205"
                     /inference="COORDINATES: protein motif:HMM:NF025280.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C2H2-type zinc finger protein"
                     /protein_id="HEY8522944.1"
                     /translation="MDQGEPGVDYDDANLNPLICDLCKKTFDSLDKLGEHQKQEHDM"
     gene            484..1404
                     /locus_tag="VIL14_04210"
     CDS             484..1404
                     /locus_tag="VIL14_04210"
                     /inference="COORDINATES: protein motif:HMM:NF016925.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese catalase family protein"
                     /protein_id="HEY8522945.1"
                     /translation="MVMFLSINKLPNNIAQGDKPNPKAAQALQEGLGGQFGEMRTMMQ
                     YLFQNMNFRGDATPYKDLLRSIATEEMGHVELVANTINVLLEGASTPSENPEELPLSV
                     ALESPNIHHFLVAGQSSRPVDAAGNPWSATYIYDSGNLVLNMLYNLMLEATGRLQKCR
                     LYEMSNNKAFRSTVSYLIVRDLVHEKVFAKALETLGVKWNKALPIPRIDTAGMKEVRE
                     LERLNLHNQMWTFTNNGEPSGLAQIFKGSSPFDDGGELEVIEGHPEGANIPFMPDAPQ
                     EFASGLDTDLRKLAQQVQNSERETKKRGRV"
BASE COUNT          544 a          262 c          293 g          483 t
ORIGIN      
        1 cgcctataat tcgactaaat gaagacaata actgcatctg actttctatt gttcgttact
       61 tgtgaagaaa aaattgcaag ctatttatca taactatttt atcttgtaac aatacattag
      121 cgtaaatgtt atcgattgta atgaccataa ctaatttatt gtatgttcaa gtgacacagg
      181 tatggatcaa ggagagcctg gtgtagacta tgatgacgct aatttgaatc ccttaatatg
      241 cgatttatgt aaaaaaacct ttgatagctt ggataaactt ggagaacatc aaaaacaaga
      301 acatgatatg taatttggga gaatctccta acgtcttgta tctcttctac aggtaatcta
      361 ttttgtataa actgtcttag ctgttctctt aacattactt cagtattttt cattaatgct
      421 tgatcctttt ctaatcatat atccgttttt ttagtcagga tttaactact ttattataca
      481 tcaatggtca tgtttctatc aataaataag cttccaaaca atatagctca aggagataag
      541 cccaatccta aggccgctca ggcattacaa gaaggcctag gaggacaatt tggagaaatg
      601 agaaccatga tgcaatattt gtttcaaaat atgaatttca gaggcgatgc aactccatac
      661 aaagatttgc tcagaagtat agcaacagaa gaaatgggtc atgtagaact tgtggcaaac
      721 actataaacg ttttattaga aggagcatca actccatctg aaaatcctga agagttaccg
      781 ctatcagttg ctttagaatc acctaacata catcatttct tagttgcagg acaaagttct
      841 agaccggttg atgctgctgg aaatccttgg tctgctactt acatttacga tagtggtaat
      901 ctagttctaa atatgttata caatctaatg cttgaagcaa caggtagact tcaaaagtgt
      961 agattatatg aaatgagtaa taacaaagca tttagatcaa ctgtatctta tctaatagtt
     1021 agagatctag ttcatgaaaa ggtatttgca aaagcattag agacactagg tgtaaagtgg
     1081 aataaagcat taccaatacc caggatagac acagcaggaa tgaaagaagt tagagagtta
     1141 gaaagactta acttacacaa tcaaatgtgg acatttacta ataatggtga accatctggt
     1201 ttagctcaaa tctttaaagg ttcatcacct ttcgacgatg gaggagaact agaagttatt
     1261 gaaggtcatc ctgaaggtgc aaacatacca tttatgcctg acgctccaca agagtttgcc
     1321 tctggtctcg atacagattt gagaaaatta gctcagcaag ttcagaatag tgaacgagag
     1381 acgaaaaagc gaggaagggt ataagaggcc cttattctat ttgtttgtcg attagttatg
     1441 tgatgctaag acaaataaca cgatgaatca gcaaacagtg accaaaaatc tataccatat
     1501 aatcgtcaat acatttgctt gcatgatagg tgaggtgcaa gtttgatcaa gattacttgg
     1561 cctgtcttct ttaaagctat ta
//
LOCUS       DATCMF010000336         2290 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_658024, whole genome shotgun sequence.
ACCESSION   DATCMF010000336 DATCMF010000000
VERSION     DATCMF010000336.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2290)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2290)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2290
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_658024"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(136..900)
                     /locus_tag="VIL14_04215"
     CDS             complement(136..900)
                     /locus_tag="VIL14_04215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522946.1"
                     /translation="MPSISEWRKWILQQLISKEIHSVMLEGSLRQEAGRHYDTKFDLA
                     LTSLMDEGIIMSLESKREKKYVVNFDKLDEAQKMINSETSWANQFPTIIQPYIAEPEG
                     YIYWFENKEDRKFKKQSIYRVYFKKTDQKDFAAQLMTQSMINTKTIYMGSLNESDSHI
                     SKLWRAASTIAEESRDGTFILQDLQDRERIACGNNRQRGKIALIIFRTLGYIQAVETK
                     GNSTKFKLSGKRPITITLDEVFNIIDNKNSGMNINS"
     gene            1045..1410
                     /locus_tag="VIL14_04220"
     CDS             1045..1410
                     /locus_tag="VIL14_04220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522947.1"
                     /translation="MTERYLRQEVSHNGKRPLESVFKNSTSKILDFLILNSKFDYSAS
                     EMSRITKVPPRTIQRVLPHLVAKELIRETGKIGNTKMYILNTQSELAQVLRQYVQTAI
                     NVNIDNARKQHVPVQLNKK"
     gene            complement(1592..1792)
                     /locus_tag="VIL14_04225"
     CDS             complement(1592..1792)
                     /locus_tag="VIL14_04225"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY8522948.1"
                     /translation="MQLKVLGIVPEVLVRLLFKFSSKSFEDSGLGLFISKIIIEAHGS
                     SVWAENSSIGKAATFAFSLPSI"
     gene            complement(2040..>2290)
                     /locus_tag="VIL14_04230"
     CDS             complement(2040..>2290)
                     /locus_tag="VIL14_04230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522949.1"
                     /translation="LNKDGIVTLNTIPIGENSFLGLTVTYRESVNEIKPQQIPVFSNG
                     IEGRGGKYRIAITYPIVNNNPGKYLGIVGMLIHIILFF"
BASE COUNT          698 a          438 c          369 g          785 t
ORIGIN      
        1 ggaacagaaa aaactacaac ttgcattcca aatgaaacta actcgtattc aactcatagt
       61 gtattgatgg agaaatattt actttcgaag atcaaaaatt attcccactt tttgcggctt
      121 attctatctt atttgtcaag aattaatatt catgcctgaa ttcttattat caattatatt
      181 aaaaacctca tctagtgtta tcgtaattgg tcttttaccg ctgagcttga attttgttga
      241 atttcccttt gtttctacag cttgaatata tcccagtgta cgaaatataa tgagagctat
      301 tttgccgcgt tgtctgttat taccacatgc tatccgctcc ctatcttgca gatcctgcaa
      361 tatgaatgtg ccatccctgc tttcttccgc aatggttgaa gctgcacgcc aaagttttga
      421 aatatgggaa tcagattcgt ttaaagaacc catatagata gttttagtgt taatcataga
      481 ctgtgtcatt aattgagctg caaaatcctt ttggtctgtc tttttaaaat agactcggta
      541 aatactttgt tttttgaatt ttctgtcctc tttattttca aaccagtaaa tatatccctc
      601 aggctcagca atatatggct gtattatggt aggaaattgg tttgcccaac tagtctctga
      661 attgatcatt ttctgtgctt catctaactt atcaaaatta acaacatact ttttttcacg
      721 tttggactct agtgacataa ttatgccctc gtccataaga gacgtcaatg ctaaatcgaa
      781 ttttgtgtca taatgtctac ctgcctcttg acgtaaactc ccttctaaca tgaccgagtg
      841 aatctccttg ctaatgagct gttgcaatat ccatttgcgc cattcagaaa ttgatggcat
      901 tcaataggct agcaactatc ctattgatta acttagcagt aaaaaatctg attttagcca
      961 tttaagacgt ctacgcgaca ttcttactgt tatttaacgc cataattggc gtatgcttat
     1021 atatcacttt gctaaatatt tcttgtgact gagagatatc tccggcaaga agtgagtcac
     1081 aacggcaaaa ggcctctgga atctgtattt aaaaatagta cttccaagat tctagatttt
     1141 cttattctta actcaaaatt tgactattct gcatctgaaa tgagcagaat aacaaaggtt
     1201 cctccacgaa ccattcagag ggttctacca cacctggttg caaaggagct aataagagaa
     1261 acaggcaaaa taggcaatac caaaatgtat atcctcaata cacaatctga attagcccaa
     1321 gtactaagac aatatgtaca aactgcaata aatgtaaaca tcgataatgc acgtaaacag
     1381 catgttccgg tccagttaaa taaaaagtaa agatgtcaaa gttttgatat gctgttcaaa
     1441 ataaagtatt gcctcagagc gtcaaaagtg tagggatttc aaaaatgatc aaaattatct
     1501 tgagatatca tgtaactgct aattcttagt cggagtagtg gtttctgtat ttttcagctt
     1561 actcctacat ggtcagtcat tagaagattt tttatatcga tggcaaactg aatgcaaacg
     1621 tagctgcttt cccaatactg ctattttcag cccacacact acttccatgg gcctcaataa
     1681 taattttaga tatgaatagt cccaaaccag aatcttcaaa cgactttgat gagaacttga
     1741 agaggagccg cactaatacc tcaggaacta tgcccagaac cttaagctga atatagcttc
     1801 cttcctattg agataatccg acgtccttct tagctgaatt taagagcgtc gttcaacaag
     1861 ttaagacaaa cttagttatt ctttctccat ctgccttctc tagggttgta tcgttattgt
     1921 aatttggtaa aggattttca aatcggatcc attgttatta taggtggttc tttcgacttg
     1981 agtatttcta tacctttgcc attgaatttc tagattccaa ttcaagatct ccataatttt
     2041 caaaaaaata gtataatatg aattagcatt cctactattc ctaaatattt tcctggattg
     2101 ttatttacaa taggatatgt tattgctatt ctatatttgc cccctcttcc ttcaatacca
     2161 tttgaaaata caggaatttg ttgaggtttt atttcgttga ccgattctct atatgtgacg
     2221 gtgagaccaa gaaacgagtt ttctcctatg ggaattgtat tgagtgtcac tatgccatct
     2281 ttattaagaa
//
LOCUS       DATCMF010000337         1569 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_506046, whole genome shotgun sequence.
ACCESSION   DATCMF010000337 DATCMF010000000
VERSION     DATCMF010000337.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1569)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1569)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1569
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_506046"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            147..422
                     /locus_tag="VIL14_04235"
     CDS             147..422
                     /locus_tag="VIL14_04235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522950.1"
                     /translation="MGAVFRAKDFGSNYKKIIDNSMKDLHPDTKDDVYKLLNTWEGTS
                     SEEKLMKIIGPERMEKLLKEVRKNSSTLNENEKEDVKNIFKDSLTFD"
     gene            676..>1569
                     /locus_tag="VIL14_04240"
     CDS             676..>1569
                     /locus_tag="VIL14_04240"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY8522951.1"
                     /translation="MNKSSGLKNVLYMGLVSFFTDFSTEMIMSVLPLYIVKDLDLSRT
                     ILGAIEGSGDLVNYIFRIPSGYLSDKIGKRKILVIFGYGISTISKPFFIFVTSFIDTI
                     TVRVADRIGKGIRTAPRDALIADSVDVSSTGKAFGIHRTLDQIGAIIGPFFAFLILEL
                     FGGNIQYIFLLSIIPGIVSLLILIYYVKDKLLTIDNNIITGDKITFFSNLRILFIENK
                     IFVYLVIIIGIFSLGAFNYSFVLLKSTDLGIEQNFVPIIYAIINISHTAIGIPAGNLS
                     DRIGKEKVLIIGFLLFVISALL"
BASE COUNT          549 a          185 c          235 g          600 t
ORIGIN      
        1 atattgaatt tcctaaatcg ttactagaaa gcacattctt ataaatagat ttcatattgt
       61 tctttaatct agttattgat ttacgactat tgaaattatc tctttataga caataagctt
      121 attatttaaa attactataa agtattatgg gagccgtatt tagggcaaaa gattttggaa
      181 gcaattacaa aaagattatc gataattcaa tgaaagatct acatcctgat actaaagatg
      241 atgtctataa attattgaat acatgggaag gtacaagttc agaagaaaaa cttatgaaaa
      301 taataggccc tgaaagaatg gaaaagttat tgaaagaggt tagaaaaaat tcaagtactt
      361 taaatgagaa tgagaaagag gatgtgaaaa atattttcaa ggattcttta acctttgatt
      421 aaggaaatat ttattttttg tttatatcta tctttactat ttccaaatag aaatataatt
      481 tttgatatct cttagtttga tttcgaattt ttgttaacta tcaaaattta tagaaatttt
      541 ctaatttaat ataatttata ccactttctc ttatcgtgct tttttttgat tttggcagtt
      601 tttttaaatt atacattcct aaatgcatag taagatacat tcataaattt ttgaaatata
      661 tctaaattag tattattgaa caaatcctca ggattaaaaa atgtccttta tatgggctta
      721 gttagtttct ttaccgattt ttcaactgaa atgataatgt ctgttttgcc tttgtatatt
      781 gttaaagatt tagatttatc cagaacaatt ttaggggcaa tagaaggatc tggtgacctt
      841 gtaaactata tttttagaat tccctcagga tatctttcag ataaaattgg aaaacgaaaa
      901 attcttgtta tatttggata tggcatctct actatcagta agccattttt tatttttgta
      961 acttcattta tagatactat aacggttaga gttgcagata gaatagggaa aggtattaga
     1021 acagcacctc gtgatgcatt aattgctgat tctgtagatg tatcaagtac aggaaaggca
     1081 tttggtattc atagaacatt agatcagata ggagcaataa taggtccatt ctttgcattt
     1141 ttgattttag aattatttgg aggaaatata cagtatatct ttttactttc aattattcca
     1201 ggtatagttt cacttctcat cttgatttac tatgtgaaag acaaacttct aactatagac
     1261 aataatataa taaccggtga taagattacc tttttttcaa atttaaggat tttatttata
     1321 gagaataaaa tatttgtata tcttgtaata attataggta tttttagtct tggagcattc
     1381 aactattcct ttgtcctttt gaaatctact gacttaggga tcgaacaaaa ctttgtgcca
     1441 ataatatacg caataatcaa tattagtcat actgcaattg gtattccggc aggaaattta
     1501 tctgatagaa taggaaaaga aaaagtgtta ataattggat ttctcttatt tgtaatatct
     1561 gcgctatta
//
LOCUS       DATCMF010000338         1719 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_307215, whole genome shotgun sequence.
ACCESSION   DATCMF010000338 DATCMF010000000
VERSION     DATCMF010000338.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1719)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1719)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1719
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_307215"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..530)
                     /locus_tag="VIL14_04245"
     CDS             complement(<1..530)
                     /locus_tag="VIL14_04245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522952.1"
                     /translation="MTNQNENTPTHTKNKEKVAEADVMLKCSLCGKKLFANESSDIII
                     EEIAGAQYHFDNPQCLIMFKRLNHAYGKNLKNFMGTSQFISDPFWDKTIPTEEEINEI
                     NHELKKPDIRVINDPEEALKTADQLIKTAKNEILLLFSSANALFRRLGRADDMSTLRE
                     LIQAQKDIKIRVLTPF"
     gene            complement(1307..>1719)
                     /locus_tag="VIL14_04250"
     CDS             complement(1307..>1719)
                     /locus_tag="VIL14_04250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522953.1"
                     /translation="VYFLARLSMKYSPLEISGMCLILSGFILIIVMLIFTPEMSINLF
                     MSYWYIFLIFSMLPLIGTICYIEGIKRIGASLTSTIASSRILLTLIIQIVLTHIGIRN
                     TLPDNVFLALIGGTLGITGIIIIHTHLYFSKHTS"
BASE COUNT          596 a          243 c          236 g          644 t
ORIGIN      
        1 tcaaaaggtg taagaactct gattttaata tccttctgag cttgaattaa ctctcgcaga
       61 gtgctcatat cgtctgccct tccaagtcgt ctaaaaagag cgttggcaga cgaaaataat
      121 aacaatattt cattttttgc agtcttaatt agttggtctg ctgtttttaa agcctcttca
      181 ggatcattaa ttactctgat atcaggtttt tttaactcgt gattaatttc attaatttct
      241 tcctctgtag gaattgtttt atcccaaaat ggatcagaaa taaattggct ggtacccata
      301 aaatttttga ggtttttacc ataggcgtga tttaatctct taaacataat aagacattga
      361 gggttatcaa aatggtattg tgctccagca atctcttcaa ttatgatgtc actggattca
      421 ttagcaaata attttttccc acataaagag cattttaaca tgacatctgc ttctgctact
      481 ttttctttat tttttgtatg tgtaggagta ttttcatttt ggttagtcaa tattcaggat
      541 atttactagt aatatttctc tgttttaaag tattcgcaaa acttggccca aagttattta
      601 attaacagac atttctccaa agaacagaga gcttcaagtt cgaaaccttc gccataaaca
      661 ctggagagtc tcttaaacaa aagaaaacaa tcttttgtgt caaaagtaaa ttcataatgt
      721 gaattattta tcaccttact ataagtaaga ggcgtatctt tttttataac tttaccacat
      781 aaactacaag atttcagtat gttatactat tttttttaaa ggatataaag tatatggtta
      841 tttttacata atttttagct aaaaatattt tcgagaattt tttggatact taaagagaaa
      901 gagtttagat tcatttttac aaaaacattt ttataaatat attttcctgt ttaaactata
      961 tcatcttagt aaagtaaaat ttaaatagaa taaatctcaa ttgtgtaagg tttaaaagta
     1021 aaatataaca aaaatgatgc gatacatcgt atattttatt gcactaataa ttctatatag
     1081 taacattttc cttcctattt aaacagagcc attctaatag cttcttgttt tttcttccaa
     1141 tatttgtttt taataatgga tctgtattaa tttccttgaa tcttaatagt gagtcctaac
     1201 gtgcctttat gaactcatca taatattcca tagtgagagc aagattgtga tagttgtccc
     1261 attagggata tattgatatt aagattatat aataatgaaa ataaaattaa ctggtatgtt
     1321 ttgaaaaata caaatgcgta tgtataataa ttattcctgt aatacctagt gttcctccta
     1381 ttaatgctaa aaatacatta tcgggcagag tatttctgat tccaatatga gttaatacta
     1441 tttgaataat tagtgttaac agaattctag aggatgctat tgtagatgtt aaggaagctc
     1501 ctattctttt tattccttcg atataacata tagtaccaat caatggtaac atagaaaata
     1561 ttaggaatat ataccaatat gacataaaca aatttataga catttcagga gtaaagataa
     1621 gcattacaat aattaagata aatcctgata atatcaaaca cattcctgaa atttctaatg
     1681 gagaatattt cattgataat ctagctaaaa aatacactg
//
LOCUS       DATCMF010000339         1600 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_506477, whole genome shotgun sequence.
ACCESSION   DATCMF010000339 DATCMF010000000
VERSION     DATCMF010000339.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1600)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1600)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1600
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_506477"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..383
                     /locus_tag="VIL14_04255"
     CDS             <1..383
                     /locus_tag="VIL14_04255"
                     /inference="COORDINATES: protein motif:HMM:NF021577.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DICT sensory domain-containing protein"
                     /protein_id="HEY8522954.1"
                     /translation="GLENILHIKPPFNKFILVSLFQSKSNFNSVAQQYATISPLSKKT
                     YLIGGKGLAQGVNLSNVEIIDFTGSGLEKNWVVIAIAKDEGCALIAEEIKSDRYRGFF
                     TTNRNLTNRCLNIINESLNIEIEI"
     gene            complement(452..634)
                     /locus_tag="VIL14_04260"
     CDS             complement(452..634)
                     /locus_tag="VIL14_04260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522955.1"
                     /translation="MADAIIIITEKSWIVCPIAISVIIINYLKNKEYNNQRKFLNSII
                     SNVNIPLNTDKYVPTC"
     gene            complement(732..1166)
                     /locus_tag="VIL14_04265"
     CDS             complement(732..1166)
                     /locus_tag="VIL14_04265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522956.1"
                     /translation="MSNSVRDKKDLVNLIVPLRLSCLTTSGWPMIIPLWFKFLNDRFY
                     CATQQNAKIISYLKKDARCAFEISSENPPYRGIRGQGKTIIKKELGIEILETVIEKYI
                     QKKNANLSKYLLKRKENEVAIEIIPTKVFYWDYSNRMKDIIV"
BASE COUNT          593 a          202 c          208 g          597 t
ORIGIN      
        1 aaggactaga aaatatttta catataaaac caccatttaa taaattcatt ctagtatctc
       61 tgtttcaaag taaaagtaat tttaattctg tagcacaaca atatgctact atttctccat
      121 tatcaaaaaa aacctactta ataggaggaa agggtttggc ccaaggagta aatttatcaa
      181 atgttgagat tatagacttt actggctcag ggttagaaaa aaattgggtt gttattgcta
      241 ttgctaagga tgaaggatgt gctttaattg cagaagagat taaatcagac cgatatagag
      301 gattctttac aactaataga aatcttacaa atagatgttt gaatattata aacgaatcgt
      361 taaatattga aattgagatt tgaaaagtat gtattattag tatttgaatt gttataacaa
      421 atatcatact tctaattaac tcatactaca attagcatgt tggaacatat ttgtctgtat
      481 ttagaggtat attcacattg ctaattatac tatttaaaaa tttcctttgg ttattatact
      541 ctttattctt taaataatta ataatgataa cggaaattgc aataggacaa actatccatg
      601 atttttccgt tataatgatt attgcgtctg ccatggcaat tatttcatat aaattaaaat
      661 aaccattagt tattggttat attattgaag aaataattat aggcccacat actccaccat
      721 ttagtctaat attaaactat gatatctttc attctatttg aatagtccca atagaaaact
      781 ttagttggaa ttatttctat tgctacttca ttttcttttc ttttaagaag gtacttactt
      841 aaatttgcat tttttttctg tatgtatttt tctataaccg tttctaatat ctctattcca
      901 agttcttttt taattatggt ttttccttga cctcttattc ctctatatgg tggattttcc
      961 gatgagattt caaaagcaca tctagcatct ttctttaaat aactaattat tttagcattt
     1021 tgctgagttg cacaataaaa tcgatcattt aaaaatttga accatagtgg aataatcata
     1081 ggccatcctg aagtagttaa acatgataat cttaaaggca caataagatt tactagatcc
     1141 tttttatctc taacactatt actcaatttg ttatatttat cgcttaagct ttattttaaa
     1201 tttcatttca aattttactc taacaaagga ataatatgtt ggattacaat ataatactta
     1261 gtaacagtat ttagctgatc aaatattagt agtgtgaaag aatacagcaa ttagaaagaa
     1321 aacaaattat atgccaaaat gatatgtctt aatcaattaa tattttagat ttgaacatga
     1381 taatatgatt ttagtcatat aatcattcaa cagtaattct tgtccataat taagaataat
     1441 agtactatag tattaatgga aaaaataata agttaaaaga tttaataaat ttagaaatac
     1501 gacaatgaaa gttgaatggt aaggaagaaa agagaaataa agccactaat atacaaaata
     1561 gcttctacat gaaaaagcat tagattatat tgaagtattg
//
LOCUS       DATCMF010000340         1938 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_307570, whole genome shotgun sequence.
ACCESSION   DATCMF010000340 DATCMF010000000
VERSION     DATCMF010000340.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1938)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1938)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1938
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_307570"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..457
                     /locus_tag="VIL14_04270"
     CDS             <1..457
                     /locus_tag="VIL14_04270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522957.1"
                     /translation="KLTKANENLSLFHAEDDEILLANFHADPDPSIFNFVSVAAYTNM
                     TNPDEFLETFKKGLNTKEKATIEILDIKKYTNVRAQSTILIKTIYTSIQTESLSDFAS
                     SSSSNEITYILFYEDETGYKITYSLPPDIAYKYQDDVISIVSQIRDNKM"
     gene            691..1056
                     /locus_tag="VIL14_04275"
     CDS             691..1056
                     /locus_tag="VIL14_04275"
                     /inference="COORDINATES: protein motif:HMM:NF012753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030234 - enzyme regulator activity
                     [Evidence IEA];
                     GO_process: GO:0006808 - regulation of nitrogen
                     utilization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="P-II family nitrogen regulator"
                     /protein_id="HEY8522958.1"
                     /translation="MKEISLYIRPEDFSKVVGILRKNNVGGITFFETNGSGRKKHEPV
                     PERVRAYMTGKMITPEFVKGTKVEVIVPDSSADQIVQDILDNLSPDTVSHGMIFVKDV
                     SGAYEIGTKLKGESVLTPK"
     gene            complement(1173..>1938)
                     /locus_tag="VIL14_04280"
     CDS             complement(1173..>1938)
                     /locus_tag="VIL14_04280"
                     /inference="COORDINATES: protein motif:HMM:NF016777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEY8522959.1"
                     /translation="QKRKRIPSLKDRLTELLQTMSNNNIDYSLILTSYKFDSERPSTS
                     QIIDILKNKGYKLGIVAGFTIDNHSNEYFKKCKEWLKDGLIKGIKLYCGYEYYYPYDK
                     KYQRIYDICIEYKVPVMIHTGDTFSTTSKVRFAHPLNIDDIAVDNPELTIIMCHIGNP
                     WLLDCQEILYKNKNVYADISGLVIGNFTLNDQKYYAYKIKELLRYVDMPHRLLYGSDW
                     PISNMESYIKFVDKLKLNKQTRDLLLFKNSSNVFRL"
BASE COUNT          716 a          268 c          268 g          686 t
ORIGIN      
        1 gaaattaact aaagcaaatg agaatctatc attatttcat gctgaagatg acgagatact
       61 cctagcaaat tttcatgcag atcctgatcc tagcattttt aattttgttt cagtagcagc
      121 atatacaaat atgactaatc cagatgaatt tctagagaca ttcaaaaaag gacttaatac
      181 aaaagagaaa gcaactatag aaattttgga tataaaaaaa tataccaatg ttagagcaca
      241 atcaacaatt ttgataaaga ccatatatac ttctatacaa acagaatctc tttcagattt
      301 tgcttcatca tcatcgtcaa atgaaataac ctatatactt ttttatgaag atgaaactgg
      361 atataaaatt acctattcgt tacctccaga tattgcatac aaataccaag atgatgttat
      421 ttcaattgta tctcaaataa gagataataa aatgtaatga atatagcata tagtattaga
      481 atacataaaa taaattgatt aatctatcac attttaatag ttaggttcgt tcacattttt
      541 aaattagaca gttgagagtc gactagatac gatttcagtg ttcaatatca gtttgattgg
      601 tagaaggatc agttaaataa gaaagtacgt actataaaaa ataagctata ataacaataa
      661 ccttattaat ttgtaatcct taaaattgat atgaaggaaa taagtcttta tataagacca
      721 gaagattttt ctaaggtagt tggtatcctt cgcaagaata atgttggtgg cattaccttt
      781 tttgaaacaa atggttctgg tagaaaaaaa catgagccag ttccagaaag agttcgtgcg
      841 tatatgacag ggaaaatgat cactccggaa tttgtaaaag gaactaaagt agaagtaatt
      901 gttcctgatt cttctgcaga tcaaattgtt caagacatat tagacaattt aagcccagat
      961 acagtgtcgc atggcatgat ctttgtcaag gatgtctctg gtgcatatga aataggaact
     1021 aaactaaaag gagaaagtgt attaactcct aaataaatta ttgttataaa aaataatgag
     1081 aatctttttt ggttttaaaa tttatttatt gatttgtcct cctattttat tcaaaagatt
     1141 tatagtttct attacaaaaa taaaatcaaa aattatagtc gaaaaacatt actagaattt
     1201 ttaaataaca aaagatcacg cgtttgttta ttaagtttaa gtttatctac gaactttatg
     1261 taactctcca tattggaaat aggccaatca cttccataca gtaaacgatg gggcatatca
     1321 acatacctta ataattcctt tattttatat gcataatatt tttgatcatt taatgtaaaa
     1381 tttccaatta ccaatcctga aatatcagca tagacatttt tatttttata tagtatttct
     1441 tgacaatcta ataaccaggg atttcctata tgacacataa taatagttaa ttcaggatta
     1501 tcaacagcta tatcgtctat attcaatgga tgggcaaagc gaactttaga tgtagtggaa
     1561 aatgtatctc cagtatgaat cataacagga actttatatt ctatacaaat gtcataaatt
     1621 ctttgatact ttttatcata tggataataa tattcatatc cacaatatag ttttatacct
     1681 ttgattaatc catcttttag ccattcttta cattttttaa agtattcatt actgtgatta
     1741 tcaattgtaa atccagctac tattccaagc ttatagcctt tattttttaa aatatcaata
     1801 atttgagatg ttgatggtct ctcactatca aatttatagg atgttaaaat aagagaataa
     1861 tcaatattgt tattgctcat agtctgtagt agttctgtta gtctatcttt taatgatgga
     1921 attctttttc tcttttga
//
LOCUS       DATCMF010000341         1735 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_507174, whole genome shotgun sequence.
ACCESSION   DATCMF010000341 DATCMF010000000
VERSION     DATCMF010000341.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1735)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1735)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1735
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_507174"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1735)
                     /gene="rpoB"
                     /locus_tag="VIL14_04285"
     CDS             complement(<1..>1735)
                     /gene="rpoB"
                     /locus_tag="VIL14_04285"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit B"
                     /protein_id="HEY8522960.1"
                     /translation="NTLKNLRRSGKIHPHIGIYFYSSLNSNATKRLYISCNSGRVLRP
                     LAIVKEGKSLMTSEIVEKINKKFLSWIDLIYMGIIELVDANEEENCFISIDLNAIDSN
                     TTHIEIYPPSILGIGASVIPYPEHNQSPRNTYESAMAKQSLGFSTPLMNASTYVRQHF
                     MLYPQIPIVTTKAINLLGLDERPTGQNCIVAVLPFEGYNIEDAVVFNKSSVERGLART
                     FFYRVYEAEAKQYPGGMKDTFELPSADENIRGFRGEKAYRLLEQDGAVMHEAIVTGGD
                     ILIGRTSPPRFIEEYKEFEVKGPYRRDTSIGVRPSENGVVDSVIMTQSVEGGKMYKIR
                     VRDMRIPEIGDKFASRHGQKGILGMLVNQEDLPYTQDGIVPDIMINPHAFPSRMTVGQ
                     FMESLGGKAAALRGKVVDGSAFLGEKLNDIKGFMEQYGFKYSGKEEMYDGRTGLKFPV
                     EVYIGVVYYQKLHHMVADKIHSRARGQVQMLTKQPTEGRARGGGLRFGEMERDCLIAY
                     GASMMLKDRLLEESDKAEVNVCERCGLLSYYDIKQRRYICRVCGDKAKISTVVIAYAF
                     KLLLQEMMSLNI"
BASE COUNT          488 a          363 c          275 g          609 t
ORIGIN      
        1 tatattgaga ctcatcattt cttgaagtag taatttaaag gcatatgcaa taacaacagt
       61 ggaaattttt gctttatctc cacaaactct gcaaatgtac cttcgttgct taatatcata
      121 gtatgacaat aggccacaac gttcacatac atttacttcc gctttatctg actcttctag
      181 taatcgatct ttcaacatca ttgatgcccc atatgcaata aggcaatctc tttccatttc
      241 tccaaatcgt agcccacctc ctcttgctcg accttctgta ggttgtttgg ttaacatttg
      301 aacttgtcct cgggctcgac tatgaatctt atcagctacc atgtgatgaa gtttctgata
      361 gtatacaact ccaatataaa cttcaactgg aaattttaat cctgtacgtc catcatacat
      421 ttcctctttc ccactatatt tgaatccata ttgttccata aaccctttta tgtcgtttag
      481 tttttccccg agaaaagcgg aaccgtctac tacttttcct cttaaagcgg ctgctttacc
      541 acccaatgat tccataaatt gacctacagt cattctggat ggaaatgcgt gtgggtttat
      601 cattatatct ggaactattc catcttgagt atagggcaaa tcttcctgat tgactagcat
      661 tccaagaatt cctttttgtc catgcctaga agcaaattta tcacctattt ctggaattct
      721 catatctctt acccgaatct tatacatttt tccgccttct acggattgag tcattattac
      781 gctatctaca acaccattct cggaaggtct tactcctata gaggtatcac gtctataggg
      841 tcctttaact tcaaattctt tgtattcttc aataaacctt ggaggagatg ttctaccaat
      901 caaaatatca ccaccagtaa ctatcgcttc atgcataact gcaccgtctt gttctaacaa
      961 tcgataggct ttttctcctc taaagccacg aatattttca tctgctgaag gtaattcaaa
     1021 agtatccttc attcctcctg gatattgttt tgcttcagct tcatacactc tgtaaaaaaa
     1081 tgttcttgct aatcctcgct ctactgatga tttattaaaa actactgcat cttcgatatt
     1141 ataaccctca aatggtagta ctgctacgat acaattctgt ccagtcggac gttcatcaag
     1201 cccaagtaga ttaattgctt tagtagtgac gataggaatt tgtggataca acatgaaatg
     1261 ttgcctaaca taggtgcttg cattcattag aggtgtggaa aagccaaggc tttgtttagc
     1321 cattgcactt tcatatgtgt ttcgtggaga ctgattatgt tcgggatatg gtataacaga
     1381 tgcaccaatt cctaggatag atggtggata tatttcaata tgagttgtgt tagagtctat
     1441 tgcatttaga tcaatagaga taaaacagtt ttcttcttca ttagcatcga ccaattctat
     1501 tattcccatg taaataagat ctatccatga gagaaacttt ttattgatct tttcaactat
     1561 ttccgatgtc atgagggatt ttccttcttt aacaattgca agtggcctta ggacacgtcc
     1621 tgagttacaa gatatgtata atctctttgt tgcattagaa tttaaggaag agtaaaaata
     1681 aatcccaata tggggatgaa ttttgccact tctacgaagg tttttcagtg tattt
//
LOCUS       DATCMF010000342         1511 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_573322, whole genome shotgun sequence.
ACCESSION   DATCMF010000342 DATCMF010000000
VERSION     DATCMF010000342.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1511)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1511)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1511
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_573322"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..435
                     /locus_tag="VIL14_04290"
     CDS             <1..435
                     /locus_tag="VIL14_04290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522961.1"
                     /translation="GEEEEEEEETSDINNDEESTTNDIFSDLSRNLPSIDEKALNENG
                     EPLESDEPLFGSPDIEALNDNNGIDKSENIVESNEQGIPSQSIEKSLNSGFSDSNKET
                     DIINEEGDGSGGSIETSSSPSSSNEVSNDEEDNNDNVINNAD"
     gene            555..1511
                     /locus_tag="VIL14_04295"
     CDS             555..1511
                     /locus_tag="VIL14_04295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522962.1"
                     /translation="MSYKNIVPSMAIILFSLLIILVPIKSFGEFPISVVDQKIFKDLN
                     GDWNLVGVVQNNAGTPIEVKIGVNITQTDKQSSILTSNTFTNVIYPYVAAPFKFTISG
                     NEFFNGFAYPIETKEVAKPFLMDLTQNYSNLATGDEKALVGTIKNTGPNIIENIAVYA
                     SVHSINGTQIDSVKSFVIPILYPGKDVRYKILPDPAIKDGVYYYSCAGLDVNAPISTI
                     GIGEGEFLVFNLESASMISNFRYENSSDSIIFEVKPYNPSGGATNFKIPQVSSNQKIE
                     ILLDGKQYENKLVTMDGKTISMDIFIPKDKHIVKISGIRNQL"
BASE COUNT          584 a          187 c          270 g          470 t
ORIGIN      
        1 ggagaagaag aagaagaaga agaagagact tctgatataa ataatgatga agaatcaact
       61 actaatgata tttttagtga tttaagcaga aatcttccaa gtattgacga aaaggcattg
      121 aatgagaatg gagagcctct agagagtgac gaaccattat tcggaagtcc agatatagaa
      181 gcactcaatg acaataatgg gatagataaa agtgaaaata tagtagaatc taatgaacag
      241 gggatcccaa gtcaaagtat agaaaagtct cttaatagtg gatttagtga tagtaataaa
      301 gaaacagaca ttattaatga agagggagac ggcagtggag gtagtataga aacatcttct
      361 tctccttctt ccagtaatga agtaagtaac gatgaagagg ataataatga taacgtcata
      421 aacaatgcag attaagatta aaaggtagat aatataagag atagaaagaa aaagtaagtt
      481 aataaaaatc catgatgaaa agaaatttaa ttctgtctat ctcatatatt atttaaatta
      541 tgaagtttag tataatgtct tataaaaata tagttccgtc tatggctatt atattatttt
      601 ctttactaat tattctagtg cctatcaaat ccttcggaga atttccaatt tcagttgtag
      661 accaaaaaat tttcaaagat ttaaatggag attggaattt agttggtgta gtacaaaata
      721 atgcaggtac gcctatagaa gttaaaatag gtgtaaatat aacccaaaca gataaacagt
      781 cttcaatttt aacaagcaat acatttacta atgtaatata tccatatgta gctgctcctt
      841 ttaagtttac tattagtggt aatgaattct ttaatgggtt tgcttatcct attgagacaa
      901 aagaagtagc aaagccattt ttaatggact taacacagaa ttattcaaat cttgctacgg
      961 gcgatgaaaa ggctctagtt ggtacaataa aaaataccgg tcctaatata attgaaaata
     1021 ttgcagtata cgcttctgtt cattcaatta atggaactca aatagattct gtaaaaagct
     1081 ttgtaattcc catcctttat ccagggaaag atgttcgata caaaattctt ccagatcctg
     1141 caataaaaga tggtgtttat tattatagtt gtgcaggatt ggatgtcaat gctcctatat
     1201 ctacgattgg tattggggaa ggagaatttc ttgtttttaa tttagaaagt gcttctatga
     1261 ttagcaattt tagatatgag aattcgtcag atagtattat ttttgaggtt aagccatata
     1321 atccctctgg gggagctact aattttaaaa ttccacaagt ttcttcaaac caaaagatag
     1381 aaattttatt ggatggaaaa caatatgaaa ataaattagt tactatggat ggcaaaacaa
     1441 ttagtatgga tatattcatt ccaaaagaca aacatatagt aaaaatatca ggaattagaa
     1501 atcaacttta a
//
LOCUS       DATCMF010000343         3160 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_507410, whole genome shotgun sequence.
ACCESSION   DATCMF010000343 DATCMF010000000
VERSION     DATCMF010000343.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3160)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3160)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3160
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_507410"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1809)
                     /locus_tag="VIL14_04300"
     CDS             complement(<1..1809)
                     /locus_tag="VIL14_04300"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004748 - ribonucleoside-diphosphate
                     reductase activity, thioredoxin disulfide as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylcobalamin-dependent
                     ribonucleoside-diphosphate reductase"
                     /protein_id="HEY8522963.1"
                     /translation="MGVSEIDKTKNKSVFKIKKRDSRVVNFDESKIAQAIYKALIATG
                     KANFPLAEELVNKVLKKMTLNSTSFDKSFIPSVEDVQDIVESILIEEGLSDTAKAYIL
                     YRHERRKIREDKIKILNKKNLDEIDKDFDINSLRVLSSRYLLRNENNEIIESPKQMFE
                     RVAILVAIPDILHDPFIFDLAGGYDQNISEATHYYDKISDFDLKLKIGSYYLNKYHFE
                     SIIRLYTQLATKGQMKTSFKDLLKLIFQGRFNSYEDRIKEYYGLMVSKDFLPNTPTLM
                     NAGARLGQLSACFVLDMPDDMEKIMKTSSDAAMIFKSGGGVGINYSDLRPEGDIVAST
                     SGVASGPASFMRIIDTITDVVKQGGKRRGANMGILEVWHPDIEKFITAKTKPGVFENF
                     NVSVGLWEDFWKALINNNNNNKYTLRNPRTREPLKQIDSHQLIDLISLSAWKSAEPGI
                     IFFDNINKYNPCIKAKEGPLRATNPCGEQSLYPYESCNLGSINLSNFVKRKADGMYEF
                     DWPRYEQAIRISSRFLDNVIDANKYPVDEIDYNTKLTRRIGLGIMGIADLLFSLRIPY
                     TSQEGYEFMNKLAETLTYYSMEESVAIAKARGSFPLF"
     gene            complement(2025..>3160)
                     /gene="nrdD"
                     /locus_tag="VIL14_04305"
     CDS             complement(2025..>3160)
                     /gene="nrdD"
                     /locus_tag="VIL14_04305"
                     /EC_number="1.1.98.6"
                     /inference="COORDINATES: protein motif:HMM:NF024984.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008998 - ribonucleoside-triphosphate
                     reductase activity [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate reductase"
                     /protein_id="HEY8522964.1"
                     /translation="GETGTLLKNNIENIFFLTSTISSYGSFSPHITLSIKLSNYDISI
                     VNSLLEGYEKYITFTAIPTIALSFVYDDLTYIDPFIDKLIQLAKSGGIISFSKKKVRA
                     RYGLCKSEEMPNTSTVVVLQSLSINLPRIAYQSNKDETYFRARLAILLKPLLSIITQR
                     FLSILNLIQNGTIPIVSQTTSNLQLGKIDAMVNLVGIQEAVYDILGYQPENNGDNVIK
                     KVIQTAVDIINEKSKENPGNAEIKITMLKDDSAFRFKDLDIEKYGKSLTINNDKNINY
                     SQGLIIDGEKIVSKSHDLDPIIEYYSSVEDLLKGGVSIDLDITNISNIHDVKKVIKSS
                     ANLPFFHLTQNFFICNICGERFFIADLKICKNCESYKISSILS"
BASE COUNT         1042 a          517 c          460 g         1141 t
ORIGIN      
        1 gaataatgga aacgagcctc ttgctttagc aattgctaca ctttcttcca tactataata
       61 agttaatgtt tcagcaagtt tattcatgaa ctcgtaccct tcttgagaag tataaggaat
      121 gcgtaatgaa aataaaagat cagctattcc cattattcct aaacctattc ttcgtgtaag
      181 ttttgtattg tagtctattt catcaacagg atatttatta gcatctataa cattatctaa
      241 gaatctggat gaaattctta tagcttgttc gtatctaggc caatcaaatt catacattcc
      301 atctgccttg cgttttacaa aatttgataa attaatcgat ccaagattac aagattcgta
      361 tggatataat gattgttctc cacaagggtt agtagctcta aggggtcctt ctttagcttt
      421 gatacatgga ttgtatttat ttatgttgtc aaagaagata atacctggct ccgcactctt
      481 ccacgcactt aatgatataa gatcgattag ttgatgtgag tctatctgtt taagaggctc
      541 acgagttcgg ggatttctaa gagtatattt attgttgtta ttgttattaa taagtgcctt
      601 ccagaaatct tcccataatc caacactgac attaaaattt tcaaaaacac caggttttgt
      661 ttttgcagta ataaactttt caatgtctgg atgccaaact tccagtatcc ccatatttgc
      721 tccacgtctt ttgccacctt gtttgacgac atctgtaatc gtatctataa tacgcataaa
      781 ggaggcagga ccagaagcga ctcctgaagt agatgcaact atatcacctt ctggtctcaa
      841 atcagaataa ttaattccta cccccccgcc agatttaaaa atcatagcgg catcagaaga
      901 tgttttcatg attttttcca tgtcatcagg catatctaaa acaaaacagg cagaaagttg
      961 tcctaaacgg gcacctgcat tcattaaagt aggcgtatta ggaagaaaat ctttggatac
     1021 cattaaacca taatattctt ttatccggtc ctcataagag ttaaaccgtc cttggaaaat
     1081 taattttaaa agatctttaa aggatgtttt catctgtccc ttcgtagcta actgtgtata
     1141 taatcgaata attgattcaa aatgatattt gttcaaataa tatgatccta tctttagttt
     1201 taggtcaaag tcacttattt tatcataata atgagtggct tctgaaatat tttgatcgta
     1261 tccaccagct agatcaaaga taaatgggtc gtgtaagata tcaggaatag ccacaagaat
     1321 cgcaacacgt tcaaacattt gcttaggaga ttcaatgatt tcattattct catttcttaa
     1381 aagataacgt gaagataaga cacgtagaga atttatatca aaatccttat caatttcatc
     1441 aaggtttttc ttatttagga ttttaatttt atcttctctt atctttcttc tttcgtgtct
     1501 ataaagaatg taagcttttg cagtatccga taatccctct tcaataagaa ttgactcaac
     1561 gatatcttga acatcctcaa cgcttggtat gaaagattta tcaaatgaag tactattgag
     1621 tgtcattttt tttagcactt tattaactag ttcctcggct aatggaaaat tagctttgcc
     1681 tgttgctatc aaagctttat aaattgcctg tgctatcttt gattcatcaa aattgactac
     1741 tctactgtct cgttttttta ttttaaatac cgatttattt ttagttttat ctatttctga
     1801 tactcccata caactcgccg tccaatttca atttatatct taaatgatat aacacttaaa
     1861 ttttattatt atgcaacata attagctaaa aattctatta ttaaattact ttaattgaat
     1921 ctttacaata gtacataata atataactga aaatattttg ttaaactgtt ttgtttttgt
     1981 taacgtaacg tgactaagtt caataaaaaa taataaaaga aaaattagga taaaatagaa
     2041 gaaattttat aagattcaca attcttacaa atttttaaat ctgcaataaa aaaacgttct
     2101 ccacaaatat tacatataaa gaaattctga gtgagatgaa aaaagggaag attagcagat
     2161 gatttaataa ccttttttac atcatgaatg ttactaatat tagtgatatc caaatcaata
     2221 gagacacctc cttttagaag atcttcaacc gatgaataat attctattat cggatctaaa
     2281 tcatgggatt ttgacactat tttttcgcca tcgataatta atccttgcga gtagttaata
     2341 tttttgtcat tattaatcgt taatgatttt ccatatttct caatatccaa atctttaaat
     2401 cgaaaggcac tatcgtcttt tagcattgtt attttaattt ctgcattacc tggattttct
     2461 ttgctcttct cattgattat atcaaccgca gtctgaatga ccttttttat cacattatca
     2521 ccgttatttt caggttgata tcccaaaata tcgtaaacag cttcctgaat tcctactaaa
     2581 ttaaccatag catcaatttt tccgagctgc aaattagagg tagtttgact tactatagga
     2641 attgttccat tttgaataag attcaaaatt gagagaaaac gctgagtaat tattgaaagg
     2701 agaggcttta gtaaaattgc taatcttgcc ctgaaatatg tttcatcttt atttgattga
     2761 tatgctattc ttggaagatt aattgataaa gactgtaata ccacaactgt acttgtgttt
     2821 ggcatttctt cagatttaca taaaccatac cttgcacgaa ctttcttctt tgaaaatgat
     2881 attattcctc cagatttggc aagttgtata agtttatcta taaaaggatc gatataagta
     2941 agatcatcat aaacaaagga aagagctatg gtaggaatcg ctgtaaaggt tatatatttt
     3001 tcatagccct ctaatagtga attaacaata gaaatatcat aattacttaa tttgatagat
     3061 aatgtaatgt gaggagaaaa tgaaccatag gaggagatag tagaggttaa aaagaagata
     3121 ttttctatat tatttttcag aagtgtacct gtttcacctt
//
LOCUS       DATCMF010000344         1979 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_308552, whole genome shotgun sequence.
ACCESSION   DATCMF010000344 DATCMF010000000
VERSION     DATCMF010000344.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1979)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1979)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1979
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_308552"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..467)
                     /locus_tag="VIL14_04310"
     CDS             complement(<1..467)
                     /locus_tag="VIL14_04310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522965.1"
                     /translation="MNDADKFIIRKAVLELAKTGTPRFSSIDDDVRNLPNVNSKTINL
                     WDYVTAIGAQLSRPPYDPYRENISLDISIGRKRSRKVTLDIPLIIYGNIAIHSSSLES
                     VHLALNQLAEKGNVLGLISETEINTTRDNKRKYPLFKKVPSSTNDSLEQDYKKS"
     gene            complement(516..>1979)
                     /locus_tag="VIL14_04315"
     CDS             complement(516..>1979)
                     /locus_tag="VIL14_04315"
                     /EC_number="1.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013784.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015930 - glutamate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0016638 - oxidoreductase activity, acting
                     on the CH-NH2 group of donors [Evidence IEA];
                     GO_process: GO:0006537 - glutamate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-binding glutamate synthase family protein"
                     /protein_id="HEY8522966.1"
                     /translation="LKRHLVRAAESSNSYFDLTKLIVDVRKINDSEIPYSGLGARSPN
                     DYFPSIKIIGSTLKTKENEDYRNYNNIDTSFTLGGRYSTNIITSDVPFFVSGMSYGSL
                     KLPAKIALHLALNRLAKEGIKVIMNTGEGGALPWELYGSEESWSDVSKKRHENILSYA
                     ERLLKEHHLDSIDRDSLFCRLYPLITQYASGRFWKDPSYLLNADGIEIKIGQGAKIGH
                     GGLLPGPKVTDLVAENRGIPSYKAAHSPSRHLDILGPEDLVAKILELREITDWRTPII
                     VKVGCSRVYDDIEIILKSYADGASIDGFVGGTGAAPWELRDIIGINTIPSLKPAREAI
                     ENYYSTDKRYDDEFRLIVHGSVWDSERIAKCIALGANGVGIGTGFLLSMGCTLVQDCY
                     TNACPAGLTGSYEKLDIQTSVNGIVNYVKGTLLELNNIAGSLGRKSIHDLRKEDLVAT
                     DELTSMICGLPLVNGQSFKDSVKEMVKTVINKRSEVV"
BASE COUNT          571 a          408 c          293 g          707 t
ORIGIN      
        1 gattttttat aatcttgttc caaactatca tttgtagaac taggtacttt tttgaataat
       61 gggtattttc ttttattatc tcttgtggta tttatttcag tttctgaaat taaccctaat
      121 acatttcctt tttcagcaag ctggtttaat gcgagatgca ctgattctag agaactagaa
      181 tgaattgcaa tattgccata tattatcaaa ggtatatcca aagtaacctt tctagacctt
      241 tttcttccta tggaaatatc taggcttatg ttctccctat aaggatcata tggtggcctc
      301 gataattgtg cccctattgc agttacatag tcccatagat ttattgtttt ggaattgacg
      361 ttcggaagat ttctaacatc atcatctatt gaagaaaatc gtggagtacc tgtctttgca
      421 agctccaaga cagcttttct aatgataaac ttatctgcat cattcaattt tttttgtcat
      481 cctcctccat tactccttat ctatttgatg atctttcaaa ccacttcact tctcttatta
      541 ataaccgtct ttaccatttc ctttaccgaa tctttaaaac tctgaccgtt tactaatggt
      601 aatccgcaaa tcatactagt caattcatct gtagcaacta aatcttcttt tctaagatca
      661 tgaatacttt ttcgtcctag tgagccagca atattattga gttcaagtaa agttccttta
      721 acatagttta ctattccatt tacacttgtc tgtatatcca atttttcata ggatccagtt
      781 aacccagcgg gacatgcatt tgtataacaa tcctgaacaa gagtacatcc cattgaaaga
      841 agaaatcccg ttcctatacc aacaccatta gcccctaaag caatacattt agctattctt
      901 tctgaatccc atacactacc atgaacgatt aatcggaatt cgtcgtcgta tctcttatca
      961 gttgaataat aattttcaat tgcttctctt gcaggtttaa gagatggtat tgtattgatt
     1021 ccaatgatat ctcgaagttc ccatggagca gcaccagttc ctccaacaaa accatcaata
     1081 gaagctccat ctgcatatga cttcaggata atttcaatat cgtcgtagac tcgagaacat
     1141 ccaaccttta caattattgg agttcgccaa tcagtgattt ctcttagttc tagaatcttt
     1201 gctaccaaat cttcaggtcc taaaatatca agatgtctgg aaggtgaatg tgctgcttta
     1261 tatgatggta ttcccctatt ttcagcaact aagtctgtta cctttggacc tggtaataat
     1321 cctccatgac ctatctttgc accctgacca atttttattt ctataccatc agcattcaag
     1381 agataactag gatctttcca gaaccttccc gaggcatatt gggtaattag tggatataaa
     1441 cgacaaaaga gactatccct atctattgaa tctaagtggt gctctttcaa tagtcgctca
     1501 gcataactta gtatattctc gtgtcttttc ttggaaacat ctgaccacga ctcttctgaa
     1561 ccatatagtt cccaaggtaa tgctccgccc tcacctgtat tcattataac ctttattccc
     1621 tctttggcga gtctatttaa cgcaagatgc agtgctattt tcgcaggaag ttttaatgag
     1681 ccatagctca ttcctgaaac aaaaaacggt acgtctgaag ttatgatatt ggtagaatat
     1741 cttcctccta aagtgaagct agtatcaata ttattatagt tcctataatc ctcattttct
     1801 ttagttttta atgttgatcc aattatttta atagaaggaa aataatcatt gggagatcga
     1861 gctcctaatc cagaatatgg aatttctgag tcatttattt ttcttacgtc aactatcagt
     1921 ttcgttagat caaaatagct attagatgat tcagctgctc ttacaaggtg tcttttaag
//
LOCUS       DATCMF010000345         2579 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_573647, whole genome shotgun sequence.
ACCESSION   DATCMF010000345 DATCMF010000000
VERSION     DATCMF010000345.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2579)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2579)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2579
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_573647"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            215..1876
                     /gene="thsB"
                     /locus_tag="VIL14_04320"
     CDS             215..1876
                     /gene="thsB"
                     /locus_tag="VIL14_04320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0140662 - ATP-dependent protein folding
                     chaperone [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thermosome subunit beta"
                     /protein_id="HEY8522967.1"
                     /translation="MSTIQQGSAGGVPVLILKEGSTQTKGRDAQKNNITAAKLIAEIV
                     RSSLGPRGMDKMLVDTLGDVTITNDGATILKEIDVQHPAAKMMVEISKATDNEVGDGT
                     TSVVVLAGALIEKAEDLITNDVHPTIIVDGYRKSAQKAIEILNKIAQKIDVGNEKSEV
                     LKIAKTSMQTKLVSKEAPELAELVVNAVFQVSDKTDSKYKVDIDDVKVEKKTGGSLRD
                     TTLIQGIVLDKEVVHGGMPKRINQAKIALLNCALEIEKTEFDAKINISSPDQMKMFLE
                     EENRMLKDMVDKIKNTGANVVVCQKGIDDIAQHYLAKSGILTVRRVKESDMTRLARAT
                     AARIVNNIDDLVLDDLGNADIVEERKVETDKWVFVEGCKHPKSVTILIRGGSQRVVDE
                     AERSIHDALMVTKDVLEKPFIVAGGGSPEAYVAGKLREWTSTLSGREQLAAEKFADAL
                     EVIPITLAENAGMDPIDTTTDLRAKQSKGSKWMGIDVKSAKITDISKLDILEPLSVKE
                     QIIKSATEAASMILRIDDVIASSKSSGGGMPPGGGGMPPGGMGEM"
     gene            complement(1885..2103)
                     /locus_tag="VIL14_04325"
     CDS             complement(1885..2103)
                     /locus_tag="VIL14_04325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522968.1"
                     /translation="MRCIICEKERIETSEYCIYHTQARKYLQASHKKWNEAYSTNLTW
                     DQYLDKLSKLENVGIWIKQVIDIELKKS"
     gene            complement(2249..2491)
                     /locus_tag="VIL14_04330"
     CDS             complement(2249..2491)
                     /locus_tag="VIL14_04330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522969.1"
                     /translation="MITKNPPARKPYCVLAVCECPDLYKRKDPNTPTKSISVIIIVSL
                     IVCSDLDGTMVNPLGTFPPSRIAFINPVDNAKKKTR"
BASE COUNT          969 a          347 c          466 g          797 t
ORIGIN      
        1 ggtgtaagga ttgaaaataa acctgctaaa gaaatttatg ctgacataga aaacggtcaa
       61 tttgattcct tatttaatta atatttgtat taattttact aaatatttat tgtaattgat
      121 gaacaaccta tataataaaa attgtattac agaaaattaa aatatcccca gttctgtcac
      181 attgttataa ataattttag gtgagaatga tagaatgtca acaattcaac aaggttcagc
      241 tggtggtgta ccagttttaa tattaaaaga aggctcaact caaacaaagg gaagagatgc
      301 acaaaagaat aatataacag ctgctaaact aatagcagaa attgtccgtt caagtcttgg
      361 tccacgtggc atggataaaa tgttagtaga cacattaggt gatgttacca tcacaaatga
      421 tggtgctact attcttaagg aaatagatgt acaacatcct gctgctaaaa tgatggtaga
      481 aatcagcaag gcgacggata atgaagttgg tgatggaact acctctgtag tagtattagc
      541 cggcgcattg attgaaaaag cggaggatct tataacaaat gatgttcacc caactattat
      601 agtagatgga tatagaaaaa gtgctcaaaa agctattgaa attcttaata aaatagcaca
      661 aaaaatagat gttggtaatg agaagagtga agtacttaaa atagccaaga catcaatgca
      721 gactaaactt gtctcaaagg aagctccaga attagctgaa cttgtagtaa atgcagtttt
      781 ccaagtatca gataagactg attcaaaata caaagtcgat attgatgatg ttaaagtaga
      841 aaagaaaaca ggtggatcat taagagatac tacattaatt cagggaatag tactagacaa
      901 ggaagttgtt catggtggca tgcctaagag aataaatcaa gcaaagattg cattattaaa
      961 ttgtgcttta gaaattgaaa agactgaatt tgatgcaaaa ataaacatta gctctccaga
     1021 tcagatgaaa atgtttcttg aagaagaaaa cagaatgtta aaagatatgg ttgataagat
     1081 taaaaatact ggtgctaatg tggtagtttg tcaaaaaggg atcgatgata tagctcaaca
     1141 ctatttagca aaatctggta ttctgacagt tcgtagagtt aaagaaagtg atatgacaag
     1201 attagcaaga gctactgcag ctcgtatagt gaacaatata gatgatctag ttctagatga
     1261 tttaggaaat gctgacatag ttgaagaacg aaaagttgaa actgataaat gggtatttgt
     1321 tgaaggttgt aaacatccaa aatccgtaac tattttaata agaggaggat ctcagcgagt
     1381 agtagatgaa gcagaacgtt ctattcatga tgcattgatg gtaacaaaag atgttttaga
     1441 aaaaccattc attgttgctg gtggtggatc tccagaagct tatgttgctg gtaaacttag
     1501 agaatggaca agtacattat ctggacgaga acaattggct gctgaaaaat ttgcagatgc
     1561 tcttgaggta atacctatca cattagcaga aaatgcaggt atggatccta tagatacaac
     1621 aactgatctt agagcaaaac agagcaaggg ttcaaaatgg atgggcattg acgttaaaag
     1681 tgccaagatt actgatattt caaaattaga tatacttgaa ccattaagtg taaaagaaca
     1741 aataattaaa tctgcaacag aagcagcatc aatgatatta agaattgatg atgtaattgc
     1801 atccagtaaa tcctcaggcg gaggaatgcc accaggtgga ggaggaatgc caccaggtgg
     1861 catgggagag atgtaaatat ctcattaact tttttttaat tctatatcaa ttacttgctt
     1921 aatccaaata ccaacatttt ctaattttga caatttatct agatattgat cccatgttaa
     1981 atttgtagaa taagcttcat tccatttttt atgacttgct tgaagatatt ttctggcttg
     2041 agtatgataa atacaatatt cagaagtttc aattctttcc ttttcacaga taatacatct
     2101 cattatattc attatattat ataatataat taaaaaagaa ttaaattaat ctcaataata
     2161 atttaaaaaa aggtatttat atttatttta aatgctatct tttattgaac tatagtaagt
     2221 caaaactcat tattgtaata tctgtaattt atctggtttt cttttttgca ttatcaactg
     2281 ggttaataaa tgctattctt gaaggtggga aagtacctaa aggatttacc attgtaccat
     2341 caagatcact acaaacaata agcgaaacaa taattattac actaatactt tttgtaggtg
     2401 tatttggatc ttttctttta tatagatcag gacactcaca taccgccaaa acacaatatg
     2461 gctttctagc tggaggattt tttgttatca caatgtcatt aatactagga ctaatgataa
     2521 taaatataaa acttaacctc taaaaagcat catatgaaat gtctattatt attctttat
//
LOCUS       DATCMF010000346         2509 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_573919, whole genome shotgun sequence.
ACCESSION   DATCMF010000346 DATCMF010000000
VERSION     DATCMF010000346.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2509)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2509)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2509
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_573919"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(31..936)
                     /locus_tag="VIL14_04335"
     CDS             complement(31..936)
                     /locus_tag="VIL14_04335"
                     /inference="COORDINATES: protein motif:HMM:NF014017.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HEY8522970.1"
                     /translation="MEHYLGCSGWSYDGWKGVFYPKDLDNKYWLSYYSKIFDFVEIDS
                     TFYKIPSKFMVNNWNKRTPENFKFAVKFPKVITHDKRLKDVEKDIEQFYYAMEQLYDK
                     ILVFLIQLPPSLQIAEGLDLIKNLRYQLDPSFRYAIEVRHHSWFNELFYNVLKERNYC
                     LVWSQQDILTTPPILTTDFVYLRLIGDRSINERDFGKINKDRTKEMQLWINKLKDIKN
                     NEKRIKNAIISANNHYAGFGPMTAKLFSEMMNLKDPIRPFPFLNYKISSNETTILENE
                     WKYSIYKQSHYKTKTRQTDISEFFT"
     gene            1705..2079
                     /locus_tag="VIL14_04340"
     CDS             1705..2079
                     /locus_tag="VIL14_04340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522971.1"
                     /translation="MLISYERSLEENINEGIKTLEYHISSQNYPIVNEMLQLQIETLQ
                     WVLNKQKKENSLESLKQIINFKVKRLEYELKKIARRDIEHTSKIVYQLEMLECCKIII
                     NWDLQRRTKTKTTKEDSISALC"
     gene            complement(2324..>2509)
                     /locus_tag="VIL14_04345"
     CDS             complement(2324..>2509)
                     /locus_tag="VIL14_04345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522972.1"
                     /translation="VNQVNELIIILINCHSMNNTKVQTTTRLVNSFAYGMKKNLCKLY
                     LLILEILILCSEINLYF"
BASE COUNT          929 a          335 c          319 g          926 t
ORIGIN      
        1 tgttagttag ttacgaataa ttaaattatc ttatgtgaag aattcagaaa tatccgtttg
       61 tcttgtttta gtcttataat gggattgttt gtatatacta tacttccatt cattttccaa
      121 tatagtagtc tcattagaag atattttgta attcaaaaaa ggaaatggtc ttatgggatc
      181 tttcaaattc atcatttctg agaataactt ggcagtcatt ggaccaaaac cagcgtaatg
      241 attgtttgct gatattatag catttttaat ccttttttca ttatttttaa tatctttgag
      301 tttattaatc cataattgca tttcttttgt tctgtcttta tttattttac caaaatctct
      361 ttcattgatg ctcctatctc cgattaatct caaatataca aaatcagtag ttaaaattgg
      421 aggagtagta agaatatctt gctgactcca gacaagacaa taatttcttt ctttgagaac
      481 attgtaaaaa agttcattga accaactatg atgtctaacc tctatagcat atctaaaaga
      541 tggatctaac tggtaacgta gattcttaat caaatccaat ccttcagcaa tttgtaaaga
      601 tggaggtaac tgaatcagaa atacaagtat cttatcgtat agttgttcca tcgcataata
      661 aaattgttct atatcctttt ctacatcttt tagacgttta tcatgagtta taacttttgg
      721 aaatttaaca gcaaatttaa aattttctgg tgttctttta ttccagttgt taaccataaa
      781 cttagaaggt attttgtaaa aagtagaatc tatttcaaca aaatcaaaaa ttttcgaata
      841 atatgaaagc caatatttat tatctaaatc tttaggatag aacactcctt tccatccatc
      901 gtaactccat cctgaacaac ctagataatg ctccaatatc ttattttatc atatgaaagc
      961 aaaaactatt tgttaaaaat atattagttt tttgttctat attttttgga tattaggtct
     1021 tgttttagaa ttaattaatt ttttctgcta aagttatgta tgttaattat ccacctaaac
     1081 cgtcccatac attgtattat gtgctttaat ggatagtctc cttaaacgaa gattattggt
     1141 atattaaaat attcaaatat tataatattt taaaaaagtt attaaatttg gatgagaaag
     1201 ggaagaaatg gtagtattat aacatagcaa tagaagaggt ttgtaaacaa caataactat
     1261 tcctagtatc aatcttacca tttcaattat atgcttatcg tatgactttc ccatcccaac
     1321 atcactgaac aactagatta ggatttttta ttctctgtaa taatatagag ggatgaacac
     1381 aatggcatta gataccgatt gaaaaatcta ctattataga gaataataat agttattcag
     1441 tgataaacaa gaatgtacat ttccattaaa taaatttttg gcattggata ttgtaaatga
     1501 ctttaattct ctaaaatatt ctgtgcaaaa acattatttc ttttcgaaaa tattcctaat
     1561 gaaattaaaa ttaggaaaag acaatttcga ttacttttat ttattattat attttttaaa
     1621 atagtgaaat acaaaatatt taaccctctc cccctccatt taaagtgatt tccttgtttt
     1681 ataatacttg attcaattga acagatgctt atatcatatg aaagaagttt ggaagaaaac
     1741 atcaatgaag gtattaaaac tttagaatat cacatcagtt ctcaaaatta tccaattgta
     1801 aatgagatgc ttcaattaca aattgaaaca ttacaatggg ttctaaataa gcaaaaaaaa
     1861 gagaatagtt tggaatcttt aaagcaaata ataaatttta aagttaaaag attagaatat
     1921 gaattgaaga aaatagcaag aagagatata gaacatacta gtaaaattgt ctatcaactg
     1981 gaaatgttgg aatgttgcaa aatcattata aattgggatt tgcaaagaag aacaaaaaca
     2041 aaaacaacaa aagaagatag tatttctgcg ctttgctaaa attattatta ttttgttttc
     2101 ttcaatccct aaaacaatat gaccaccaga agaattagcg aatgcataaa aatcatttaa
     2161 atttgttctc ccaaatattt gttgaaatac tgacaattat tttaaaataa aagaggggat
     2221 tttgcagcag tccaaacaaa tgctcaatgc ttcgataatc cctaaacctt ttttattttt
     2281 ttgttataat agcagacaat tattctaatt attaaaatat agattaaaaa tatagattaa
     2341 tttcagaaca taaaatgaga atttcaagaa ttaataaata taatttgcat aaatttttct
     2401 tcataccata ggcaaaacta ttaacaagtc ttgttgtagt ctgtaccttt gtattgttca
     2461 tgctatgaca attaattagt attattatta attcattaac ttggtttac
//
LOCUS       DATCMF010000347         6383 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_376010, whole genome shotgun sequence.
ACCESSION   DATCMF010000347 DATCMF010000000
VERSION     DATCMF010000347.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6383)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6383)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6383
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_376010"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..874
                     /locus_tag="VIL14_04350"
     CDS             <1..874
                     /locus_tag="VIL14_04350"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY8522973.1"
                     /translation="MVFQNYALYPHMSVYDNIAFPLKMRKLSKHEIKNKVENTANLLE
                     LTQFLKRKPKELSGGQMQRVALARALVRNPKLFLMDEPLSNLDAKLRMQMRTEIKKLQ
                     KKIGITTIYITHDQIEAMSMADQIIVMNKGVIQQIGSPYVIYYQPTNIFVANFIGSPP
                     MNFLKFRISQTSEDFNLYSSQIAIKIPKRNLPLLENIDSEIVLGIRPKDIIIDDKKDK
                     NHPYTVSFKGKLLFTELLGDEVIYEIKLENNSIIKVSSNTDNFNYKQNDEIDLIIRYK
                     NIHFFDSLTEQRLF"
     gene            1260..1511
                     /locus_tag="VIL14_04355"
     CDS             1260..1511
                     /locus_tag="VIL14_04355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522974.1"
                     /translation="MDNQNTHTCQVCGATVTDLVSIKVENDNVIKLGKFVNGNWICDD
                     CFLKQKGIESESIDYSTEEKDKSKDIASSRDVSPNTPPA"
     gene            complement(1762..2730)
                     /locus_tag="VIL14_04360"
     CDS             complement(1762..2730)
                     /locus_tag="VIL14_04360"
                     /inference="COORDINATES: protein motif:HMM:NF015971.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522975.1"
                     /translation="MTIFQRYSKNPILTPNKDNWWESKAVFNCSVSYDGKYVHMLYRA
                     IGEYDHYISRIGYASSSDGVQFDRRHNIAILPTEDYEKHGMEDPRITQIDDKIFVTYV
                     VLSEYVKNHPKIFSALAVTKNYDEFDKLGIITKDFDNNKDVIFFPDKFKIDYNISNNS
                     SFLILHRPTSLSNPDYQISRPSIWLSISNTESTLNNSILLLKPEQDWENLKVGAGPSP
                     IKTKEGWLLIYHGVSADKVYRAGAALLDLDDPRKVIARTKQPILEPEEDYEKIGDVNN
                     VVFPTGTVIIDKKIFLYYGGADRVCCVASASLDELIENILKDSITA"
     gene            2893..4128
                     /locus_tag="VIL14_04365"
     CDS             2893..4128
                     /locus_tag="VIL14_04365"
                     /inference="COORDINATES: protein motif:HMM:NF015882.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent malic enzyme"
                     /protein_id="HEY8522976.1"
                     /translation="MNIKDDSINLHRMLKGKIEIQNRVPIENIFAKENSLLNLIYTPG
                     VAYVASEIGENKDLAYDFTSKWNNVAIICDGTRVLGLGNIGPYAALPVMEGKSVLFKL
                     LGGINAVPLCIETQNKEEIIKFVKYIQPLFGAINIEDIESPKVLEIVERLKKEISIPV
                     FHDDQHGTAIITLAALINSLKVVGKQLEKIKVLILGAGSAGYGINKILNSAGCKNTIV
                     VDSKDAIFEGRKDLINNQFKSEIASKSNPTKIEGPLDSVIEGCDVFIGVSGKGNILNN
                     KVIPTMNVDPIVFALSNPYPEILPLSALDAGAKIVATGRSDFPNQVNNAVIFPSVIRA
                     LLDLRVRLLNENLMVNVAYAISNLVEIQHLKTDYIIPQINDQRILPVVTQTLKSVIQE
                     TVTHDYDNENNDEDKNKIS"
     gene            4316..5053
                     /locus_tag="VIL14_04370"
     CDS             4316..5053
                     /locus_tag="VIL14_04370"
                     /inference="COORDINATES: protein motif:HMM:NF024777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LamG domain-containing protein"
                     /protein_id="HEY8522977.1"
                     /translation="MQNNSKNLLALATTSILFTIIAVSFFPTDDRKADAQSANATNYN
                     LEPFLSLQGSTFQDIPDNESLKLDNFTIATWFRTSPNYTEPGHIVNKGGMGTDEEGMN
                     LNYGIWINENNAVAGGFEAESGDDFIVNSSKNYNDGNWHYSLLTFNGSSLLLFVDGKL
                     VGNQSAITDKPDNSGDQPLRIGANSLNEDKFFSGDVDEIRVWDRALNESEAKDTYSGN
                     QFNTTGQALFLSYGDYVNSEAKPTYKK"
     gene            5435..6034
                     /locus_tag="VIL14_04375"
     CDS             5435..6034
                     /locus_tag="VIL14_04375"
                     /inference="COORDINATES: protein motif:HMM:NF015945.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PspA/IM30 family protein"
                     /protein_id="HEY8522978.1"
                     /translation="MNKLRQDITTVVTSKKRLEIQKAKLSTNISTLEQQARRSLESNR
                     EDLARLALERKNLLLTQIKELERQIGDIEKEQNKLEDAERRLSSKIEEFKTRKEMIKA
                     QYSAAEAQVKIKENMTGISEEMNDLGMVLNRVEEKTENMKAKAQALDEMIDSGTLTDI
                     TTSYPAGENLDIEKELDKVSIDRSVEEELTKLKTEVGKT"
     gene            6068..>6383
                     /locus_tag="VIL14_04380"
     CDS             6068..>6383
                     /locus_tag="VIL14_04380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522979.1"
                     /translation="MSRNDIIVRISGKGQFRINSEILDKINKIDNSIVDLIENYSSGA
                     SDHKTTQKDLQNKLTEMVSLITSNGQPLDHKEIVQSETIIPDSDLSIEEATKIFKGEG
                     VIS"
BASE COUNT         2426 a          847 c         1012 g         2098 t
ORIGIN      
        1 aatggttttt caaaattatg cattatatcc acacatgagc gtatacgata atatcgcatt
       61 tcctttaaaa atgagaaaat tatcaaaaca tgaaataaaa aataaggtag agaataccgc
      121 taatttgttg gaacttactc agttccttaa acgaaagcca aaagaattga gtggtggtca
      181 aatgcaaaga gttgctttag caagagcact tgttagaaat cctaaattat ttctaatgga
      241 tgaaccactg agtaatttgg atgctaaatt gcgtatgcaa atgagaacgg agattaagaa
      301 attacaaaag aaaataggaa ttacaactat ctatattacg catgaccaaa ttgaagctat
      361 gagtatggcc gatcaaatta tcgttatgaa taaaggagta attcaacaga taggttcacc
      421 ttatgtgata tattaccaac ctacaaacat tttcgttgca aattttatag ggagtccacc
      481 aatgaatttt ttaaaattca gaatatctca aacatccgaa gattttaatc tttattcgtc
      541 tcaaattgct attaaaattc caaagagaaa tttaccacta ttagaaaata tagattctga
      601 aattgtttta ggaataagac cgaaagatat tatcattgat gataaaaaag acaaaaatca
      661 cccttataca gtatctttta aaggaaagtt attatttacc gaattacttg gagatgaggt
      721 aatttatgaa atcaaattag aaaataatag tataatcaaa gtttcatcaa atacagataa
      781 ttttaactat aaacaaaatg atgaaattga tttgataata agatataaaa atatacattt
      841 tttcgattct cttacagaac aacggttatt ttgattcata attctagaac taattactat
      901 caatttataa taataatgct actaattgta caaagtatta gtaacacaat taaggatcta
      961 aaagaagttt aattttctaa aagtataata attattatca tcatcatgtt ttagaattga
     1021 ataaaactaa taaactaata ctaatactaa taataattcc acgattatat tttggataat
     1081 aaaaatttcg aaggaaaata aaattttttc actaaggagt aggtaaaagc ttaaaatttc
     1141 ataatatcta aaaccaaatt ttcaaaaact atcgaaccta tcaaaaaaag ttataaatag
     1201 taaatttatg ttgttataaa tcatttaatc cttaaaaagt tgtttgatca ataaattata
     1261 tggacaatca aaatactcat acttgtcaag tatgtggtgc tacagttacc gacttagttt
     1321 caattaaagt tgaaaatgat aatgtgatta aattaggtaa atttgttaat gggaattgga
     1381 tttgtgatga ttgttttctg aaacaaaaag gaatagaatc agaatctata gattattcaa
     1441 cagaagaaaa ggataagtct aaagatattg catcatctag agatgtttcc cctaatactc
     1501 ctcctgcttg atttataatg atccatatat tttattttaa ccaattaata gatctaaatg
     1561 tgtctatttt ttgtttttgt ctatgaataa aagaataata atgcccaaag ggtataggaa
     1621 ggtaagtatc cttggtatgc tgttaatttt actaactaat agtaatatct agaaaatgaa
     1681 aataaagtag tagtatgttt aatgtttaaa ttaattaaaa ataaatttaa ggtttaaaat
     1741 tagaaaggat agtgtgttaa tctaagcagt tattgaatcc ttcaaaatat tttcaattag
     1801 ttcatccaga ctggcacttg ctacacaaca tactctatct gcacctccat aatataagaa
     1861 aattttttta tcaattatta cggtaccagt aggaaaaaca acgttgttaa catctcctat
     1921 tttttcatag tcttcctctg gttctaagat gggttgtttc gttctagcaa taacttttct
     1981 tggatcatcc aaatctaaaa gtgctgctcc cgctcgataa actttgtctg cacttacacc
     2041 atgataaatt aataaccatc cttcttttgt tttaataggt gatggacctg cgccaacttt
     2101 gagattctcc caatcttgtt ctggctttaa tagtaaaata gaattattta acgttgattc
     2161 agtattactt atacttaacc atatactagg acgacttatc tgataatcgg gattactcaa
     2221 actagtaggt cggtgtaata tgagaaaaga actgttatta gaaatattat agtctatctt
     2281 aaatttatca ggaaagaaaa ttacgtcttt gttattatca aaatctttag taataatacc
     2341 taatttatca aattcatcat aattttttgt tactgctagt gcagagaaga tttttggatg
     2401 attttttacg tactctgaga ggacaacata agtaacaaag attttatcat caatttgtgt
     2461 tattcgaggg tcttccatgc catgtttttc atagtcttct gttggaagaa tcgcaatgtt
     2521 atgacgtcta tcaaattgaa caccatcact actactggca taccctattc tggaaatata
     2581 atgatcgtat tctccaattg ctctatatag catatgaaca tacttaccat catatgatac
     2641 tgaacaatta aatactgcct tggattccca ccagttatcc ttattgggtg ttagtatagg
     2701 atttttcgaa tatctctgaa atatcgtcat tatatgccta actatataac aataacaata
     2761 taattagtat taggatagat attcccagat agaaaatagt aaacatttaa ctatatgatt
     2821 tatttattta tttacctatt ttcattttgt tttagaagaa ctattataat attatctatc
     2881 taatgttatt acttgaatat taaagatgat tctattaatt tacatcgaat gttaaaaggt
     2941 aaaatagaaa ttcaaaatcg tgtccctata gagaatattt ttgcaaaaga aaatagtcta
     3001 cttaatttaa tttatacgcc aggtgttgca tatgttgctt ccgagattgg agagaataaa
     3061 gacttagcat atgactttac ttctaaatgg aataatgtag caattatatg tgatggaaca
     3121 agagtattag gccttggcaa tataggtcct tatgcagctc ttccagtaat ggaaggtaaa
     3181 tcagtccttt ttaaattatt aggtggaata aatgctgtgc ctctttgtat tgagacacaa
     3241 aataaagagg aaataataaa atttgtgaaa tatatacaac ctttatttgg tgctatcaat
     3301 atagaggata tagaatcgcc taaagttctg gaaattgtag agaggctaaa aaaagagatt
     3361 tctatacctg tatttcatga tgatcaacat ggaactgcta taattacctt agcagcattg
     3421 ataaattctc ttaaggttgt aggaaaacaa ttggaaaaaa ttaaagtttt aattttagga
     3481 gcaggttctg caggatatgg aataaataaa attctcaatt ctgcagggtg taagaataca
     3541 atagtagttg atagtaagga tgctattttc gaaggacgca aagatttgat caacaatcaa
     3601 tttaaatctg aaatagcatc taaatcaaat cctacaaaaa tagagggtcc tttggattct
     3661 gttattgagg gatgtgatgt atttataggt gtttcaggaa aaggtaacat tttaaataac
     3721 aaagtaatac ctactatgaa tgttgatcca atagtttttg cattaagtaa tccgtatcct
     3781 gaaatattgc ctctatctgc tttggatgca ggggcaaaaa ttgtggccac tggtaggtcg
     3841 gattttccca atcaagttaa caatgcggtg atcttcccat ccgttataag agctttattg
     3901 gatctacgtg ttaggttatt gaatgagaat ttgatggtga atgttgcata tgctatatca
     3961 aatttagtag aaatccaaca tctgaaaact gattatataa taccacaaat aaatgatcaa
     4021 agaattctcc ctgttgttac tcagacttta aagagtgtaa tacaagaaac agtgacacat
     4081 gattatgata atgaaaataa cgatgaggat aaaaataaaa taagttaaat tgtaaaaaat
     4141 caattaatat tctatatttt atttgtttcc acagtgaata tttgtatgtt tataaagaac
     4201 attacaataa gtatagggaa tgagagctta taattatttt atcatatata agtataataa
     4261 aataaactga aaaattcatg gtcatctatt tatactttct atgctttttc atgatatgca
     4321 aaacaatagt aaaaacttac ttgcactagc taccacatca attttattta ctatcattgc
     4381 ggtatctttt ttccctaccg atgaccgaaa agctgatgca caatcagcaa atgctacaaa
     4441 ctataacctt gaaccgttcc tttcgttgca aggttcaaca ttccaagata ttcccgataa
     4501 tgagtcatta aaactagata attttactat agcgacatgg tttagaacga gtccaaatta
     4561 tactgaacct ggtcatattg tgaacaaagg tggaatgggt actgatgagg aaggaatgaa
     4621 tttgaattac ggaatttgga ttaatgaaaa caatgcagtt gcggggggat ttgaagcaga
     4681 atccggagat gatttcattg tgaactcgtc taagaattat aatgatggaa actggcatta
     4741 tagcctttta acatttaatg gatcctcgtt attgctattt gtagatggca aattggtagg
     4801 aaatcagagc gccataactg acaaaccaga taattctggg gaccaacctc tacgcattgg
     4861 agcaaattcg ttaaatgaag ataaattctt tagcggggac gttgatgaga taagagtatg
     4921 ggatagagca ttgaatgaat ctgaagccaa ggacacatat tcaggtaacc aatttaatac
     4981 aacaggacag gctttgttct tatcatatgg agattatgtc aatagtgaag caaagcctac
     5041 ttataaaaaa taggtaacat aggttatttt tttatatttt tttatttttt tcatagtatc
     5101 tatgttatta cattctccta agttattact atattaagtg atgttaaaac tctaaggata
     5161 aatattgaaa tggcccttta atatagaata ataagaaata aaataaattt ttattgtatg
     5221 aggaaaagac ttggttataa aatataccac ctaatattat aaaaattctc ttatcctata
     5281 tataacatta atatttgata ctgttctatt aggtttattg ggattattag aacgcttctt
     5341 atctatattc agagcaaaag ctcattctgt tgctgatata tttgaagatc ctaactaaat
     5401 gctaaattat tctttctaaa aacaacatga attaataaat aaattaagac aggatataac
     5461 tacagttgta acttcaaaaa aacgacttga aattcaaaaa gcaaaactta gtactaatat
     5521 ttctacatta gaacaacaag ctcgtcgatc actcgaatct aatcgggaag atttagcaag
     5581 attagcacta gaaagaaaga atttgctgct cacacaaatt aaagaattag aaagacagat
     5641 tggtgatata gaaaaagaac aaaataaatt ggaggatgct gaaagaagac tttcttctaa
     5701 aatagaagaa tttaagacac gtaaagaaat gataaaagcg caatattcag ctgctgaagc
     5761 tcaagtgaag ataaaggaaa acatgacagg aatatcagaa gaaatgaatg accttggtat
     5821 ggtattaaac agggtagaag aaaagacaga aaatatgaag gctaaggcac aggcattgga
     5881 tgaaatgata gattcgggaa cattaactga tattacaaca tcttatcctg ctggtgaaaa
     5941 tttagacatt gaaaaagaac ttgataaagt ttctatagat aggtcagttg aagaagagtt
     6001 aacaaaatta aaaacagaag tcggcaaaac ttagttattt attgtattga taaaattgtg
     6061 aaagtgtatg agtagaaatg atattattgt gagaatatca ggtaaaggac aattcagaat
     6121 taattcagaa atattagaca aaattaacaa aattgataat tcaatagttg atttgattga
     6181 aaactattcc tcaggagcaa gtgaccataa aactactcaa aaagatctac aaaacaaatt
     6241 gacagaaatg gttagtttaa taacatcaaa tggacaacca ttagatcata aagaaattgt
     6301 tcaatcggag actataattc cagattctga tctttctata gaagaagcaa caaaaatttt
     6361 taaaggagaa ggagtaatct caa
//
LOCUS       DATCMF010000348         5965 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_574044, whole genome shotgun sequence.
ACCESSION   DATCMF010000348 DATCMF010000000
VERSION     DATCMF010000348.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5965)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5965)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5965
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_574044"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..204)
                     /locus_tag="VIL14_04385"
     CDS             complement(<1..204)
                     /locus_tag="VIL14_04385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522980.1"
                     /translation="MRKKIVIASVSLMAIMFVGTIAGFLNFAPKSNNNNNQDPLNPET
                     FLNKLLSPSTVNASALGNERANIT"
     gene            302..466
                     /locus_tag="VIL14_04390"
     CDS             302..466
                     /locus_tag="VIL14_04390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522981.1"
                     /translation="MESGGLGSVSYECMRCGTNVTIEELSALPEIKCICGFRVFRKAR
                     QPVVKQIKAI"
     gene            546..719
                     /locus_tag="VIL14_04395"
     CDS             546..719
                     /locus_tag="VIL14_04395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522982.1"
                     /translation="MKIICPDCKKTAHLEDDFSFVKCNYCSLDLTYGEYVKYIAYKDA
                     RYSDILSDYKNNR"
     gene            1129..1431
                     /locus_tag="VIL14_04400"
     CDS             1129..1431
                     /locus_tag="VIL14_04400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HEY8522983.1"
                     /translation="MSTSEKKVNELRPGMRGVNVKVRIDSISEPRSVNLRTGGQAKVA
                     DAQVSDETGVIKLSLWDDQINMIEEGDMVVIENGYTHAYRGENNLNIGKYGKLQKI"
     gene            1516..2046
                     /gene="ppa"
                     /locus_tag="VIL14_04405"
     CDS             1516..2046
                     /gene="ppa"
                     /locus_tag="VIL14_04405"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004427 - inorganic diphosphate
                     phosphatase activity [Evidence IEA];
                     GO_process: GO:0006796 - phosphate-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HEY8522984.1"
                     /translation="MNSSFIGKIPSGIPNQINVIIEIPKGSNIKYEVDKDSGLLFVDR
                     KLFTAMFYPCNYGFIPSTMEEDGDPVDVLVIGEFALVPLSILKAIPIGVLLTEDEEGQ
                     DSKIIAIPINKIDPTFSSIKDVDNIPNSLKKQIEHFFAHYKELEGGKYVRIAGWGNKE
                     MAETKITEASKRYLKT"
     gene            complement(2057..3271)
                     /locus_tag="VIL14_04410"
     CDS             complement(2057..3271)
                     /locus_tag="VIL14_04410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEY8522985.1"
                     /translation="MILAPQELENSASKYAAEAIRLDSQGSRLKAIQFYQRAIEALNK
                     LIQIYPEYKLNKIYLERSNAYLNRIKSLQMSNVLEDEEGKGDENIVGNDADNSDRKIG
                     SEMRKPKESLGEEFDSLIMKEKPNISWNDVIGLDDAKRAIRESIVYPTKRSDLFPLGW
                     PRGLLLYGPPGCGKTLLAAAAAAEIDGYFVNVDAAAMMSKWLGEAEKNVSKLFKMANK
                     LYESENIPILLFIDEIDSLIGNRNGEVGGEIRVKNQFLTEMDGINNKSKNSKLYVIGA
                     TNKPWSLEAGFLRRFQKRIYVTLPDNDSRNYLFKQYTMPLKKDKTLKIDELSKLVQGY
                     SASDIKDICQAVQLRVVNELFESGKAMEAQSNPRSISMNDFKEIIKIRKPSVSIDMIR
                     AYMRWSEQFKAL"
     gene            complement(3460..4740)
                     /locus_tag="VIL14_04415"
     CDS             complement(3460..4740)
                     /locus_tag="VIL14_04415"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: protein motif:HMM:NF016724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEY8522986.1"
                     /translation="MSEIMLLKFPFELKKDQRDAVDEWINKKGKGSIIYSTGTGKTEI
                     AFECARKMASLIREQNPLLVFKILFLVPRIVLIEQNIKRLIKYGIKKEKIGVYYGEKK
                     DIKEITFSTYQSIIKNFDLLRESDMIILDEMHMVSETAKRLSKIFDVLYDNYDKLILG
                     LTATIDENDPRYSKIMKLIPPVKKYMIKEAVNDGRLSEPQVILKPVKMNFEERRIYEQ
                     TTSTIKDISLKLKASNPLIVSKLLKAGGQRARLAKLWFASVHKRKKLLNETNSKLNES
                     VNIVKNHPKEKIMIFSETIESLNNISGILAKNNIPSEVIHNKVKTKQRREILDSWGKN
                     YFVLLSVHTLEIGFDIPSVSIAIIVSNTKNIHQLIQRIGRVIRKTDEKSQSLIYVVYV
                     DDTKDKDILNLVRASLQNHSIKKPINQDKISSYF"
     gene            4880..5386
                     /locus_tag="VIL14_04420"
     CDS             4880..5386
                     /locus_tag="VIL14_04420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF367 family protein"
                     /protein_id="HEY8522987.1"
                     /translation="MKVFVLELKQDDPTKCTAAKLVKFKLIQSSRFIPNDTIVLNPLS
                     KIALSKTDNSIAKSICAIDCSWNYFDETIKKFKILKKRINRRLPLLLAGNPVNYAKLG
                     KLTTAEAIAGSLFILGFQSNAEELLNKFKWGHTFLELNIELLELYKNQEDPNEILKIE
                     KDYFPNLY"
     gene            5408..5692
                     /gene="rnpB"
                     /locus_tag="VIL14_04425"
     ncRNA           5408..5692
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="VIL14_04425"
                     /product="RNase P RNA component"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00373"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="archaeal type; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00373"
BASE COUNT         1996 a          891 c          857 g         2221 t
ORIGIN      
        1 tgttatgtta gctcgttcat ttcctagtgc agaggcatta actgtagatg gacttaataa
       61 tttatttaaa aacgtctctg gattgagagg atcttgatta ttattattat tactcttggg
      121 agcaaaattt aaaaaaccag ctatagtgcc tacaaacata atcgccatta acgaaacact
      181 tgcaattaca atttttttcc tcattttatc tgatattgag attaccaaac ttattaatca
      241 tttggaacta catttttaat tttccagtac aattaaatta atctttaaga gaataagaat
      301 tatggaatct ggaggtctag gtagtgtctc ctatgagtgt atgagatgtg gaactaatgt
      361 aacaattgaa gaattatctg cattgcctga aataaaatgt atttgtggat tccgagtttt
      421 tagaaaagca agacaacctg ttgtaaaaca gattaaagca atttaataat atatttgcta
      481 aaggttatct tagtgtcaag ctaataaaac caagtattta tagcttaaac actatattat
      541 atagtatgaa aataatttgt cctgattgta aaaaaactgc ccatctggaa gatgattttt
      601 catttgtaaa atgcaattat tgttcattgg atcttaccta tggcgaatat gttaaatata
      661 ttgcatataa agatgctcga tatagtgata tattgagtga ctataaaaac aataggtgat
      721 gccattcgaa tgttttcttc tctgaatcaa aatttttact tgttgtaaca ttcgagtttt
      781 tgttcaaata taattttata ctatatactt caatatgagt gtgaaacata tatacaatta
      841 atgctaaata aaaaaatttt taaattcgcg gtcatcttat aaaataaaaa attcaaattt
      901 gaaaaacaaa tttgagaaaa actgtcaata ggatattttt taatgcttga caaatggtta
      961 tggttcttat tcatattgca tttttctttg ccaattcttt agattttttt tgttatatat
     1021 ttattagaat tgtgagaaat tcctagtcat tattaattaa attataaata tattttaatt
     1081 taaaaatatt atcattttta ttattcttct ttattttatt tattagtaat gagtacgagt
     1141 gaaaaaaagg ttaatgaatt gagacctgga atgagaggag taaatgtaaa agttagaata
     1201 gatagtattt ctgaaccgcg atctgtaaac ttaagaaccg gaggacaagc aaaggttgcc
     1261 gatgctcaag tgtcagatga aacaggagta atcaagttgt ctctatggga tgatcaaatt
     1321 aacatgattg aggaaggcga tatggtagtt attgaaaatg ggtatacaca tgcatataga
     1381 ggagaaaata atctaaatat tggcaaatac gggaaattac aaaaaatatg acaaccattt
     1441 taatttatta ataatatctt ttgattttat ttactgatct gttgagttat aaatgggatt
     1501 ttaaatatcc ttgatgtgaa ctctagcttt ataggaaaaa ttcctagtgg tattccaaat
     1561 cagattaatg ttattatcga aataccaaag ggaagtaata tcaaatatga ggttgacaaa
     1621 gatagtggtt tattatttgt agatagaaaa ttgtttaccg caatgtttta tccatgcaat
     1681 tatggtttta taccgtctac tatggaagag gacggcgatc ctgttgatgt cttggttatt
     1741 ggtgaatttg cattagttcc actttctata ctcaaagcaa ttcctatcgg tgtattatta
     1801 actgaagacg aagaagggca agattctaaa attattgcaa tacctattaa taaaatagac
     1861 ccaacttttt cttctataaa ggatgttgat aatataccaa atagcttaaa aaaacaaatt
     1921 gaacattttt ttgcacatta taaagaatta gaaggcggaa aatatgtaag aattgcagga
     1981 tgggggaaca aagaaatggc agaaactaaa ataactgaag ctagtaagag atatttgaaa
     2041 acctaagatt ttttgattat aacgctttga attgttcact ccatctcata taagctctaa
     2101 tcatgtctat gcttacacta ggttttctta tttttataat ttctttgaaa tcattcatag
     2161 atatggaacg cggatttgat tgtgcttcca ttgcctttcc actttcaaat aattcattga
     2221 caactcttaa ttgtactgct tgacagatgt ctttaatatc gctagcactg tacccctgaa
     2281 caagtttaga taactcatct atctttagtg ttttatcttt ttttaatggc atagtatatt
     2341 gtttaaataa ataatttcgt gaatcgttgt ccggtaaagt aacataaatt ctcttctgaa
     2401 atcttctcag aaaacctgct tccaagctcc agggtttatt tgtcgcgcca ataacatata
     2461 gttttgaatt ctttgattta ttgtttattc catccatctc agttaaaaac tggtttttaa
     2521 cacgtatttc ccctcctact tcgccattcc tatttcctat taaagaatct atttcgtcaa
     2581 taaaaagcaa tataggaatg ttttcacttt cgtataactt attagccatt ttaaaaagtt
     2641 ttgaaacatt tttctcagct tccccaagcc atttactcat cattgcagct gcatcaacat
     2701 ttacaaaata accatcaatt tcagcagctg cggctgctgc aagtaatgtt tttccacatc
     2761 ctggaggtcc atatagtagt agtcctcttg gccatcctaa tgggaataaa tcagatctct
     2821 tagtaggata aactatagat tctcttattg ctcttttagc atcgtcaaga ccaatcacgt
     2881 cattccaaga aatattaggt ttttctttca taattaaact atcaaactct tcaccaagtg
     2941 attcctttgg tttcctcatc tcactcccta tttttctatc agaattgtca gcatcattac
     3001 caactatatt ttcatcaccc tttccttctt cgtcttccaa tacatttgac atttgtaatg
     3061 atttaattct gtttaaataa gcgttagacc tttctaagta tattttattt aatttgtatt
     3121 ccggataaat ttgtattaat ttattcaaag cctcaatagc tcgttgataa aattgaatag
     3181 cctttaatct tgaaccttgt gaatcaagcc taatagcttc agcggcatat ttacttgcac
     3241 tattttctaa ttcctgtgga gctaaaatca taattctagt cgatattatt tagttcataa
     3301 ttgattttta gtactatgat gtaaatctta tttgttctaa aaactaaaaa taatatacca
     3361 ataaatttta acgtttaggt atactttggc ttcactttct tttacattta ttattgttaa
     3421 aataagaaat actttgataa aatccatttc tataattgac taaaagtaag atgagatttt
     3481 atcttggtta attggttttt ttatactgtg gttttgtaat gaagctctaa ctaggttaag
     3541 gatatcctta tctttagtat catctacata tacaacatat attagagact gacttttttc
     3601 atctgttttt cttattactc gtcctattct ctgtataagt tgatgtatat ttttcgtatt
     3661 tgatactatt attgctatac ttacagacgg tatatcaaat cctatctcca atgtatgtac
     3721 tgatagcaat acaaaataat ttttccccca tgaatctaaa atttcacgtc tttgttttgt
     3781 ctttacttta ttatgtataa cttctgaggg aatattattt ttcgctagaa ttccacttat
     3841 attatttagg gattctattg tttcactaaa tatcataatt ttttcttttg gatgattttt
     3901 aactatattt acagactcat ttaattttga gttagtttca ttaagcaatt tttttctttt
     3961 atgaacactt gcaaaccata actttgctaa tcgggctctt tgtccacctg cttttaataa
     4021 ctttgaaact atcaaaggat ttgatgcttt aagttttaat gaaatatctt taattgtgct
     4081 cgttgtctgc tcgtatattc ttcgctcttc aaaattcatt ttcactggtt ttagtataac
     4141 ttggggttca cttaatcttc catcattaac agcttctttt atcatatatt ttttcaccgg
     4201 aggaattaac ttcattatct ttgaatatct tggatcattt tcatcaattg ttgccgttaa
     4261 acccagtatt aatttatcat aattatcata tagcacatca aaaattttgc ttaatctttt
     4321 ggcagtttca ctaaccatgt gcatttcatc aagtataatc atatctgatt ctcttagtag
     4381 atcaaaattt tttataatgc tctgataagt gctaaaggta atttctttaa tatctttctt
     4441 ttctccatag tagactccga tcttttcttt ttttataccg tattttatta gtcgttttat
     4501 attttgttct atcaatacaa tacgaggaac caaaaaaaga attttaaaga ctagtaaggg
     4561 attctgttct ctaattaaag aagccatttt ccgtgcacat tcaaaagcta tttcagtttt
     4621 tcctgtaccc gtactataaa taatagaacc tttgcctttc ttatttatcc attcatcaac
     4681 tgcatctctc tgatcttttt ttaattcaaa aggaaatttt agaagcatta tttcagacaa
     4741 gaataataag ttaactcaga agttattaat aatttacgta ctttactgat tttataatgt
     4801 ttataagcag tccaaaaata tttctattaa gatttctaaa tttacataaa taattgaata
     4861 ttcttaataa ttattgtaaa tgaaagtttt tgttttagag ctaaaacaag atgatccaac
     4921 taaatgtact gcggccaagt tggtaaaatt taaactaatt caatcaagca gatttatacc
     4981 gaatgacact atagttttaa acccattatc taaaattgca ttatctaaaa cggacaatag
     5041 tatagctaaa tctatctgtg ctatagattg ctcttggaat tattttgatg aaacaataaa
     5101 aaaattcaaa attcttaaaa aaagaattaa tcgacgtctt ccattacttc tagcaggaaa
     5161 tcctgtaaat tatgcaaagt taggaaaatt aactactgct gaagctatag caggctcttt
     5221 atttatacta ggttttcagt caaatgcaga agaattatta aataaattca aatggggaca
     5281 tactttttta gagttgaata ttgagctatt agaattatac aaaaaccaag aagaccctaa
     5341 tgaaattctt aaaattgaaa aagattattt tccaaatcta tattagtttt tattgtatta
     5401 taatattgtg agctagcgta cgagtgactc gaaagagagg aaactcctcc ctcatggcag
     5461 gcactcaaat tagcgataat tagctggaga cagctggcaa cgtaacagaa aagtatctag
     5521 aggactaatt gatattctat gatggccaat agcctgagat tgtctttcct agaatgaaac
     5581 tgacgacctg agtggagcaa ggccaaaatg agtaacatat ccctgcattg gctcaggttg
     5641 gccgctaagc gaaatctcgt ataaaacaga aggagggtta ttgctagcac acactccttt
     5701 caaatgagtg ttcttacaat agttatttaa tggagattga taaaaatatc attggcaatc
     5761 cacggaaatg ttagtaatag aacaaaaaaa gaacaagaat tattattaga aaaaaaggta
     5821 gagtcaatca ccaagtctta aatttattag tgtacctcca cactatcatt attaggcctt
     5881 gtaatattcc tcctctggag taagagtaag agtttgagta cttgtaataa ataaaaaact
     5941 atttgttata tagatagaat tttaa
//
LOCUS       DATCMF010000349         2059 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_574152, whole genome shotgun sequence.
ACCESSION   DATCMF010000349 DATCMF010000000
VERSION     DATCMF010000349.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2059)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2059)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2059
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_574152"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(146..1465)
                     /locus_tag="VIL14_04430"
     CDS             complement(146..1465)
                     /locus_tag="VIL14_04430"
                     /EC_number="2.1.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004372 - glycine hydroxymethyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0019264 - glycine biosynthetic process from
                     serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HEY8522988.1"
                     /translation="MSAKESYNKIFELMKSHHDWFANSIPLIASENIPSTAVREAIVS
                     DFGNRYAEGWPGERVYAGCTFIDQVEIICNELARKVFNAEFADCRATSGVVANLAIYS
                     GFTLPGETMIATSIPNGGHISHGKKEHFGTAGHVCGLNIEFFPFSKEEMTIDVDLTKK
                     KILDLINNGKSPKMGMFGGSLFLFPHPVKELVDFMHDHKMFINYDGAHVAGLIAGGEF
                     QDPIREGVDSMTMSSHKTLWGPQGGIILSLEKYAETIKKSIFPGNTSSHHLHHVAGKA
                     IALAEVLEFGKDYAKQVIKNAKKLAESLADYGFTVLGEKRGYTQSHQIAVDVSKYNDG
                     GTIEKDLEKSNIILNRQLLPGDIQAGRHYMHPSGVRIGANEITRLGMKESEMIEIANF
                     IKRVVIDKEDTNNIKRDVTEFKKQYQKLKYVFDGQLEAYKYISLVQV"
     gene            1752..1826
                     /locus_tag="VIL14_04435"
     tRNA            1752..1826
                     /locus_tag="VIL14_04435"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1787..1789,aa:Val,seq:tac)
BASE COUNT          704 a          356 c          243 g          756 t
ORIGIN      
        1 tatattttta aagaaaaaga aatacaaaaa aatcctcaat cgtctatttt tgactatata
       61 gaccaataaa attacttata acccctttaa ttaaataatt aaataaatct atattaatat
      121 tgaattaaat ataatagaaa aatagttaga cttgtactag gctgatatat ttataagctt
      181 ccagttgacc atcaaaaaca tactttagtt tttgatattg ttttttaaat tcagtaacat
      241 ctcttttaat attattagta tcttctttat caataacaac tctttttata aaattcgcta
      301 tttctatcat ttcgctttct ttcattccca atcttgttat ttcattagcc cctattctga
      361 caccgctggg atgcatataa tgtcttcctg cctggatatc tcctggaagt aattgtctat
      421 taagaattat attagatttt tccaaatcct tttcaatagt tccaccatca ttatattttg
      481 aaacatctac tgcaatctga tgtgattgtg tataacctct tttttctcct aacacagtaa
      541 atccataatc tgccaaactt tctgctaatt ttttagcatt ttttatgact tgcttagcgt
      601 aatcctttcc gaattccaat acttctgcta atgctattgc tttaccagct acatgatgta
      661 agtgatgact acttgtatta ccaggaaata ttgatttttt tattgtctct gcatattttt
      721 ctaatgaaag tataattcct ccctgagggc cccataatgt cttatgagaa ctcatagtca
      781 tagaatcaac tccttctcgt atgggatctt ggaattctcc tcctgctatt aatcctgcaa
      841 cgtgtgcccc atcataatta ataaacatct tatgatcatg cataaaatcg actaattcct
      901 ttacaggatg tggaaaaagg aataaacttc ctccaaacat acccattttt ggagatttac
      961 cattattaat caaatccaaa atcttttttt tagtcaaatc aacatcaatt gtcatttctt
     1021 cttttgaaaa agggaagaat tcaatattta atccacatac atgacctgca gtgccaaaat
     1081 gttctttctt tccatgagaa atatgtcctc catttgggat agatgtagct atcattgttt
     1141 ctcctggaag agtaaatcct gaatatatag ctagatttgc aactactcct gaggttgcac
     1201 gacaatcggc aaattctgca ttaaaaactt tcctagcaag ttcattacag attatttcaa
     1261 cttgatcaat aaaagtacaa ccagcatata ctctttcgcc gggccatcct tcagcatatc
     1321 tatttccaaa atcagatact attgcctctc tgactgctgt actaggaata ttctcactag
     1381 caattaatgg aatagaatta gcaaaccaat catgatggct tttcattaac tcaaagattt
     1441 tattatagga ttcctttgca ctcattagta taatttttga atttccttcc taatttaaaa
     1501 atgttgtaat tgaaaaacaa tattgaaatc atttttaatt gttatatcac tatttataca
     1561 tacaaattat atcatgattg tattaaataa gaataataaa ttaaagaagg aataatttat
     1621 aaaattacta aatttacatt aaaattataa ttattataga ttatagatat aaatatatga
     1681 ttccaaaatc tatgaaaatc ttaatcataa attaatataa tagttataac aatgaatcaa
     1741 agatcaataa cggaggggtt gtctagactg gttaggatac ctgccttaca cgcaggtggt
     1801 catgggttca aatcccatcc cctccactct attcacgggt ttatgcataa accttttatt
     1861 tcatattcga atattttgat ttaaaagacc taaaaaatgc ccagtgaaaa attctattcg
     1921 ttataaaata ttttgaatca aaacagttta aacaattcgt agtaaataat aaatttgcag
     1981 aagaaggatt taagttttaa aactgcttgc taagatatta aaaactcaag aagttttact
     2041 tattctacca tacttttat
//
LOCUS       DATCMF010000350         1731 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_309132, whole genome shotgun sequence.
ACCESSION   DATCMF010000350 DATCMF010000000
VERSION     DATCMF010000350.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1731)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1731)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1731
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_309132"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(331..>1731)
                     /locus_tag="VIL14_04440"
     CDS             complement(331..>1731)
                     /locus_tag="VIL14_04440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="reverse transcriptase domain-containing protein"
                     /protein_id="HEY8522989.1"
                     /translation="VLADLNGLLVCAGDIGNAFLYGKTREKVYIIAGPEFGPELQGKR
                     MIIEKSLYGLKSSAARFHEHLSTTLRSFGYRPSKADFDLWFKKVDDHYEYIARYVDDV
                     IVFSKDPMPIMEKLQKIYVMKGVGKPQYYLGGDVIELGPEWNKENIHTAFSAETYITN
                     ILPKLAESCGLQQFHKSSIPFSEDYHPELDISDLLDPKDITLYKSLLGSANWIITMER
                     FDIAYAVNSLSRYSMAPREGHLKALQKVFGYLRTKTKGKILIDSQVAPIRDVAIITRG
                     QDWNEFYPDAVENIPDDIPDPKGEMCTLTCYVDADHARDQLTRRSVTGIILLLNNTPI
                     IWVSKRQKTVETSTYGSELVASRIAIELIISMRYCLRMLGVKLEDSSLMIGDNMAVIL
                     NTTIPSSAIKKKHQACNYHKIRESIAAGFINYGHIPSSENMADIVTKPLGKVIFEKLT
                     SQYLFRRPIYEEKAET"
BASE COUNT          542 a          338 c          260 g          591 t
ORIGIN      
        1 gattttgaga tcatctgaaa atatttcttc cgtttgagaa cggtcaacgt catccctatc
       61 cgttagagta tcatttcgag ttcaaggata ctccttcaaa aatcatgtac gatacagtac
      121 tgaagatttg ataccttggg aatcatttcc aaatcaagta tctttgccaa ttttcaactt
      181 gaaatcttaa aaaatatttc tcactctctc ccctttatta accaatcaaa ataaatgtat
      241 aaatgtagta ttcatgtatt cccccaaata aaatatgcaa acatgtagat atgtaaatat
      301 acatcccaaa taaatttctt gaaaataaat tcaagtttct gctttttctt catatattgg
      361 tcttctgaat aaatattgag aagtaagttt ctcaaatatt acttttccca gaggtttggt
      421 aacaatatca gccatatttt ctgaacttgg aatatgtcca taattgataa aaccagctgc
      481 aatactttcc ctgatcttgt gataattgca tgcttgatgt ttcttcttaa tagcagaaga
      541 aggaatggtg gtgttcagaa taactgccat attgtcacca atcatcaaag aactgtcttc
      601 aagttttact cccagcattc ttaaacaata tctcatggag attattaact caatagcaat
      661 ccttgatgca accaattctg atccataagt tgatgtttcc actgttttct gcctctttga
      721 tacccaaatt ataggagtat tattaagcag aagtataata cctgttacag accttcttgt
      781 taactgatct ctggcatgat ctgcatcaac atagcaagta agagtacaca tctccccttt
      841 tggatcaggt atatcatctg ggatattctc cacagcatcc gggtaaaact cattccaatc
      901 ttgtcctctt gtgattattg caacatccct gataggagca acttgtgaat caatgagtat
      961 ttttccttta gtcttggttc tgaggtatcc aaagaccttc tgaagagctt tcaagtgtcc
     1021 ttcccttggt gccatagaat atctggataa tgaattaact gcataagcaa tatcaaatct
     1081 ttccattgta attatccagt ttgcacttcc aagcaatgac ttgtataatg taatgtcttt
     1141 tggatcaagt aagtcactga tgtcaagttc aggatgataa tcttcagaaa atggaataga
     1201 ggacttatgg aattgttgta aaccacatga ttcagccaat tttggtagta tatttgttat
     1261 atatgtctca gctgaaaatg ctgtatggat gttttctttg ttccattcag gacctaattc
     1321 aataacatca cctcccaaat aatattgagg ttttccaact cctttcatga catagatctt
     1381 ctgtagcttt tccataattg gcataggatc tttggagaac acaatgacat catccacata
     1441 tctggcaatg tattcatagt gatcatccac tttcttgaac catagatcaa aatctgcctt
     1501 agatggtcta taaccaaaag atctcaaggt agttgaaaga tgttcatgaa atcgagcagc
     1561 acttgattta agtccatata aagatttctc aatgatcatt ctttttcctt gtaactcagg
     1621 tccaaactca ggtccagcaa tgatatagac tttttctctg gttttaccat aaagaaaagc
     1681 atttcctata tcacctgcac ataccaaaag tccattcaaa tctgctaata c
//
LOCUS       DATCMF010000351         1728 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_376290, whole genome shotgun sequence.
ACCESSION   DATCMF010000351 DATCMF010000000
VERSION     DATCMF010000351.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1728)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1728)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1728
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_376290"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..901
                     /locus_tag="VIL14_04445"
     CDS             <1..901
                     /locus_tag="VIL14_04445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="HAD-IC family P-type ATPase"
                     /protein_id="HEY8522990.1"
                     /translation="ELLRLAAIAESGSEHPLAQAIIRKAKENGTPIINPDSFEAVSGH
                     GLKATYSNHAIMIGNRKMMEDNQVAVTESVDAKLSEFEKEGKTAVLVSIDNTLSGIIA
                     ISDTIKENAKAAIKALKAQGIEVIMLTGDNKRTANAVASKLGIDRVIAEVLPYQKEEV
                     VAKLKTTEGKVVAMVGDGINDAPALARADLGIAIGSGTDVAKETGGIILIKDDIRDVV
                     TALDLGKRTVSKIKQNLFWAFAYNTGLIPIAAGALVPVLGLGVFGWLPILAGLAMAMS
                     SVTVVTNSLLLGKYKPKFETYYL"
     gene            complement(1089..1319)
                     /locus_tag="VIL14_04450"
     CDS             complement(1089..1319)
                     /locus_tag="VIL14_04450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522991.1"
                     /translation="MTVLKISQIEVNEETQQWWFVEPYDEIFQEYNSIDGYPLHIIDK
                     VEEILSKKIGNKKVKVTVFAYKGIIGNYTILD"
BASE COUNT          605 a          253 c          287 g          583 t
ORIGIN      
        1 agaattactc agacttgcag caatagcaga atctggttca gaacatcctt tagcacaggc
       61 tataattagg aaagctaaag aaaatggtac tcctataatc aacccagatt catttgaagc
      121 agtttccgga catggtctca aggcaacata ttcaaatcat gcaattatga ttggcaatag
      181 aaagatgatg gaagataatc aagttgcagt tactgaaagt gttgatgcaa aactttctga
      241 atttgaaaaa gaaggcaaga ctgcagtatt agtttctata gataacactc tttcaggtat
      301 aatagctata tctgatacta taaaagaaaa tgccaaagct gcaattaaag ctttgaaagc
      361 acaaggaata gaagtaataa tgcttactgg agataataag agaactgcta atgcagtagc
      421 atctaaactt ggtattgata gagtaattgc agaggtactt ccctatcaaa aggaagaagt
      481 agtggctaaa ttgaagacaa cggaaggtaa agttgtggca atggttggag atgggattaa
      541 cgatgcacca gcattggcaa gagcagattt ggggattgct ataggttctg gaactgatgt
      601 tgccaaagaa acaggtggaa tcatacttat taaagatgat ataagagatg ttgtaactgc
      661 attagattta ggaaaacgaa ctgtttcaaa gataaaacag aacctattct gggcatttgc
      721 atataatact ggcttaatac ctatagcagc tggagcatta gtgcctgttc ttggattagg
      781 ggtatttggt tggctaccaa tactagcagg attagcaatg gctatgagtt ctgtaactgt
      841 agtgacaaac tctttattgc ttggaaaata taagcccaaa ttcgagactt attatcttta
      901 actttgtttt ataaaaaaga agataaagtg agattaactc gctcagaatt caatgcgata
      961 tttcaagatc taacgtatcg aaaaaaacaa tctcagaaga cggtgaacct aagcttttaa
     1021 agctttaaag cggttgttta cccatttatg aaagctaaac tatttcaaaa attgttaatt
     1081 gttaattgtc aatccaatat agtataattt cctataatac ctttataagc aaatacggta
     1141 acttttactt tcttatttcc aatttttttc gaaagtattt cttctacttt atctatgata
     1201 tgcaaaggat aaccgtcaat actattatat tcttgaaaga tttcatcata gggttctaca
     1261 aaccaccatt gctgtgtttc ttcattaact tctatttgag aaatttttaa tactgtcatt
     1321 tagttttcaa ttgtttatta ttatctttta tataaaaata agtctttaat taatcttctt
     1381 tttacttcaa atgggttcac ctctcaaact gctacctcta tcttcaaatg gagttcagat
     1441 agtagaaatt gttataatta tacaatttta tttttcaaaa gagtaaataa attctattta
     1501 atatgctctg ttttaattct aaattacact cactagatat ttttgctatt ataccttata
     1561 gtacaatttt caaagaatat tcttttaaat tgggtatata accttaaaat gaatagttct
     1621 aagcgataga tttaaacatt caattcatta aaagttgcac gattgttttt gttgttatta
     1681 aggaattact ataactccta taccttttac ttttacaata aagcacga
//
LOCUS       DATCMF010000352         2683 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_309289, whole genome shotgun sequence.
ACCESSION   DATCMF010000352 DATCMF010000000
VERSION     DATCMF010000352.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2683)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2683)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2683
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_309289"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(30..905)
                     /locus_tag="VIL14_04455"
     CDS             complement(30..905)
                     /locus_tag="VIL14_04455"
                     /inference="COORDINATES: protein motif:HMM:TIGR01297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HEY8522992.1"
                     /translation="MHSNVNDKKNHHDHAKKLRLVLIITISFLIVEVITGIFANSLAL
                     IANAIHMFTDVAGIGLALVAINFSSKRSATAHKTYGFYRLEILTALINSTIILIFSFY
                     IIYEAYWRLFEQNEIKGLYVFVIATIGLIVNLIGIKILHRHAKENINVEGAYLEVLKD
                     MYGSCAVIVAALIIISTNLYIVDPIVSIGLSLFILPRTWSLMKRVVNILMEGVPSNIS
                     YEQVKNSILEIKGVTGIFDLHLWTITSGFDAMTAHVVISDISKSQIILNEINSILEKK
                     FNITHNTIQIETYHE"
     gene            complement(1156..1983)
                     /locus_tag="VIL14_04460"
     CDS             complement(1156..1983)
                     /locus_tag="VIL14_04460"
                     /inference="COORDINATES: protein motif:HMM:NF012234.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY8522993.1"
                     /translation="MKQNILNNLIYQVFTKTIKKKNLPIVLNKIRLKQTDSLNIPYIN
                     RYDITNKNDINKIDSNKIEIFNDIVGYDDIKKLFIMAINSIEPIHIALAGPPASAKTI
                     FMRCLLALPNSYFVDGSNMSKPGLIDYIFNNNIQYLLIDEIDKILPKDQTVFLNLMET
                     GIVSETKYNKTRKMKTKISIFATCNDINKIIHPLRSRFLSLILKGYSYEEFHQIVTKL
                     LSKKSINQKIIDEVVYAVWYNIKSKNIRDCLKIAQMANSVDDIIFLVNIYNKYNIKK"
     gene            complement(2092..2463)
                     /locus_tag="VIL14_04465"
     CDS             complement(2092..2463)
                     /locus_tag="VIL14_04465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522994.1"
                     /translation="MSTYNKAEASQPQKKMHECTRCKSAGFPEQMIWFKKVENGYDDK
                     IFWKLMDDNGLEHIHKYKTSPMGKNEVSDQKVRRKRVIDIFTVSDIDEARRLLREGWE
                     YKTSYPATLSNIPHYVLVKRE"
BASE COUNT          901 a          358 c          357 g         1067 t
ORIGIN      
        1 tgaatcttat caaaaataaa tttcaaaaac tattcatgat atgtttctat ttgaattgta
       61 ttgtgagtaa tattgaattt tttttctaat atggaattaa tttcgtttaa aataatttgt
      121 gattttgaaa tatccgaaat aactacgtga gcagtcatgg catcaaatcc cgaagtaata
      181 gtccataaat gtaaatcgaa tattcctgtt actcctttaa tttctaaaat tgagttttta
      241 acttgttcat acgaaatatt tgagggaacc ccttccatta atatatttac tactcttttc
      301 atgagtgacc acgttcgtgg taatataaat aaagataagc caatactaac tattggatca
      361 acaatatata aatttgtaga tatgattatc aatgctgcaa caattactgc acatgatccg
      421 tacatatctt ttagaacttc gaggtatgct ccttcaacat taatattttc ttttgcatgt
      481 ctatgaagta ttttaattcc tatgagattg acaatcaaac caatagttgc aataacaaaa
      541 acatataatc ctttgatctc attttgttca aataaacgcc aataagcttc ataaataata
      601 taaaatgaga aaattagtat tattgtacta tttattaatg cggtaagaat ctctaatcga
      661 taaaacccat acgttttatg agctgtagca gatcttttag aagagaaatt tattgctact
      721 aatgctagtc caatacctgc aacatctgta aacatatgaa ttgcatttgc aatcaaggca
      781 agactattag caaatatacc agtgattact tctacaatta gaaatgaaat agtaatgata
      841 aggacgagtc ttaatttctt cgcatgatcg tggtgatttt ttttatcatt aacatttgaa
      901 tgcaaaagtt tttgtgtaaa ttaagatgta taacatataa attttttccg tcatttatta
      961 cattgattgt taaagatgaa taaacaataa tgttacagtc attattataa gatcatcgcg
     1021 tagagctaaa cttgagatta tgaagaatat cttttctttt caatatttta tcatgttaat
     1081 ttgtttttaa aaaattgtta ctatacatgt ttacaatata aaatattctc ataggaaatg
     1141 ttaatactag tagatttatt ttttaatatt atatttatta tatatattta ctagaaatat
     1201 tatatcgtca acagagttcg ccatctgtgc aatctttaaa caatcacgga tattttttga
     1261 tttaatatta taccaaaccg catatactac ttcgtcgatt attttttgat taatgctctt
     1321 tttagatagt aatttagtta caatttgatg aaattcctca taggaatacc ctttaagaat
     1381 tagtgataga aatctggaac gaagaggatg tattatttta tttatatcat tacatgtagc
     1441 aaatatactt attttggttt tcattttgcg agttttatta tacttagttt cagaaacaat
     1501 cccagtttcc attaaattta agaaaactgt ttggtctttt ggtaggattt tatcaatttc
     1561 atctattagg aggtattgaa tattattatt gaatatatag tcaatcaaac caggttttga
     1621 catgttacta ccatctacaa aataagaatt tggtaatgct aataaacatc tcataaaaat
     1681 cgttttggca gatgcaggag gtccagctaa agcaatatga attggttcaa tagaattaat
     1741 agccattata aagagttttt taatatcgtc atagcctact atgtcattga aaatttctat
     1801 tttgttagaa tcaattttat taatatcatt tttatttgta atatcatagc gattgatgta
     1861 gggaatatta agagaatctg tttgttttaa tctaatttta ttcaagacaa ttggtaaatt
     1921 tttctttttt attgttttgg taaaaacttg ataaatcaaa ttattaagta tattttgttt
     1981 catttcccaa aattttgtaa tacattattg ttgttgatag tttctgcttg ttattattaa
     2041 cttaaattca gaattataaa taaaaagaag gaacttattt cctctaaata tttactccct
     2101 ttttactaat acataatgag gaatatttga caatgttgct ggataagaag tcttgtattc
     2161 ccacccttct cttagtaatc ttcttgcttc atctatgtca ctaactgtaa atatgtctat
     2221 aacccttttc cgtcttacct tttggtctga aacttcattt ttacccattg gcgaggtttt
     2281 atatttatgt atgtgttcta agccattatc atccattaac ttccaaaata ttttatcatc
     2341 gtatccattt tctacctttt tgaaccatat catctgttct ggaaaaccag cagatttaca
     2401 tcttgtacat tcatgcatct ttttttgcgg ttgtgatgct tccgctttat tatatgtaga
     2461 cattagtaaa atctttagaa tcatgcttat aatggttgag aacttggagg agagggagag
     2521 atcgtcaact ttttcaattt gtaattatta taatttcatg tatgaaaaaa ttttcacgat
     2581 agctttatgt gaattttaat tgtaggaaaa atgaatgagt tatacttcct atttctatat
     2641 attgttttaa actttagtag tagtattgta attttagaaa att
//
LOCUS       DATCMF010000353         1542 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_574430, whole genome shotgun sequence.
ACCESSION   DATCMF010000353 DATCMF010000000
VERSION     DATCMF010000353.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1542)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1542)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1542
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_574430"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            131..538
                     /locus_tag="VIL14_04470"
     CDS             131..538
                     /locus_tag="VIL14_04470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522995.1"
                     /translation="MNINNTIMNERNNILIIIDSFIEQITKIRRFFIGVSISSIILAP
                     IAISLALYLFTHQSFFRIVEAEREFGLGLVVLLTAVVIISSILFVTGILQYRQIDSWH
                     KKYESYKKEKDDINQYIANKFKNYIDEEDTNKG"
     gene            complement(567..860)
                     /locus_tag="VIL14_04475"
     CDS             complement(567..860)
                     /locus_tag="VIL14_04475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEY8522996.1"
                     /translation="MQRDRVYLIIDILTKLIEYGEVNQSSLLLYCRLNLTKHKEILDG
                     LEKNNFIVKKNSYLGKKMILSYSITSQGIEFYKKILEPYEKFFPRKESERDLI"
BASE COUNT          607 a          184 c          181 g          570 t
ORIGIN      
        1 caaagccaaa cagttacatt tacagcaaat aagaccggaa cttttaatta ttattgtagt
       61 attcatccgg agatgactgg taaaataata gtcaagggtc atgttaaata aagaggcagg
      121 catataaaga ttgaatataa ataatacaat tatgaatgaa agaaataaca tactcattat
      181 tatagatagt tttattgaac agataaccaa aattagaaga ttctttatag gagtttcaat
      241 ttcatcaatt attcttgctc ccattgctat ttcattagca ctctatcttt ttactcatca
      301 atccttcttt agaattgtag aagcagaaag ggaatttgga cttggattag ttgtattatt
      361 gacagctgta gtaataatat cttctattct ttttgttact gggattcttc agtatagaca
      421 aatagattca tggcataaaa aatatgagtc ttataaaaaa gaaaaagatg atataaatca
      481 atatattgct aataaattta aaaactacat tgatgaggaa gatactaaca aagggtaaat
      541 aaaataataa tttggtatta tatactctat attaaatctc tctcgctctc tttccgtgga
      601 aagaatttct catatggctc taaaattttc ttataaaatt ctattccttg agaagtaatt
      661 gaataagaaa gtatcatttt ttttcctaaa taggaattct tctttacaat aaaattattt
      721 ttctctaatc catcaagtat ttctttatgt ttagttaaat tgagtctaca atacaataat
      781 aaagatgatt gattaacttc tccatactca attaatttgg ttaaaatatc aattataaga
      841 taaactctat ctctttgcaa tatttataaa cctggtatcc tttatcatat ttcgaatatt
      901 aaaataataa taataatatt ttaactttaa tgtaaatatc tcaacttcat gacattaatt
      961 atatgctatt aatggataga ctttaaccaa atataaaatt tagatcgttt aacaaagtta
     1021 acagaaactt atattctaaa ttgatagtaa aggtatatgc ttacatataa aactattacc
     1081 gtaaacaaag attattataa taaaaataat tgtagatttg tattatgtga ttcatgctgg
     1141 tggtttgcaa ctattataaa aaattcgttt aaaattagtg aatgtcctat atgtaagaac
     1201 aggaaaattt atatcgaaac gataagaata taatactact taaaaaaagg atttaaccat
     1261 aattatcaat taacttggtt tactattttt taaatattaa atccttatac tgataacata
     1321 tataccaatt ataaaagagg ataacaatag cagtagtcag aaaaatagta ttttatttct
     1381 tatttcttta attattattt cactaggaat tttattttta ataattggat atggtattta
     1441 ttcaccttct acaaagaata tttacttaga caatggacta ctaactattc caaaaatagg
     1501 tcatatagat ttaataaaag acagcaataa taaatttttt at
//
LOCUS       DATCMF010000354         1966 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_309734, whole genome shotgun sequence.
ACCESSION   DATCMF010000354 DATCMF010000000
VERSION     DATCMF010000354.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1966)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1966)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1966
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_309734"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            40..>1966
                     /locus_tag="VIL14_04480"
     CDS             40..>1966
                     /locus_tag="VIL14_04480"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HEY8522997.1"
                     /translation="MAKIPRISSALNAVDIQQNPPPLIIGERVNSQGSRKAKEMVLKD
                     DFEGLLNLARSQVEEGAHCLDICVATTERSDEHDFMCQLVKRLCLEIEAPLVIDSTDP
                     KVIESAIKQIPGKPIINSINLEGDGSRFHSLAPLMIKYGVPAIAMCIGPNGMAKTPKE
                     KLETACLLFETGKKYGLKPWQFIFDVLTFTLATGQEEFLDSAKNTLEGIKLVKENLPG
                     CFTTLGLSNVSFGLPTHARKIINSVFLYHAIKSGLDSVIINPKDIVAYSDINQEERRL
                     AENLIFNLRNTALSDLISYYENKTNTDPTKKQSDGNSKLDIDPNWKFDKKCYYRIVNR
                     LREGIEYDVVGAILENVKDKDTKAEISLTEATTSPSSSSSSSSSSTSLLSNHDVIAHL
                     SKEQLHTAAVKTLNETLLPAMKEVGDKFGAGEIILPFVLKSAECMKAAVAELEKYLIK
                     KKDVSKGKIVLCTVYGDVHDIGKNLVKTILVNNGYSVYDLGKQVPLQTIVNKISEVNA
                     DAVGLSALLVSTSKQMQIFVDYAKEHNLQIPVLCGGAAINTNYINRIAKDGGGIYEQG
                     VFYCKTAFDGLNVMNNLTSDKRNQYITKWKEKVELWKEFKPASINVSEVSKHSGIKPV
                     PPPIPPHTGLPIRLGLEN"
BASE COUNT          719 a          313 c          352 g          582 t
ORIGIN      
        1 cacctccaaa aaaaaattat aggaatgaat gaatgaatta tggccaaaat tccaagaatc
       61 agttcagcgt taaatgctgt tgacattcaa caaaatcctc ctccattaat cataggagaa
      121 cgagttaaca gtcaaggctc gagaaaagca aaggagatgg ttctcaaaga tgattttgag
      181 ggtcttctca atcttgccag aagtcaagtg gaagaaggag cacactgttt agatatatgt
      241 gtagcaacca ctgagagatc tgatgaacat gatttcatgt gccaacttgt aaagcgactg
      301 tgtttagaaa tagaagctcc tctggtaata gattcaacag atcctaaagt cattgaatct
      361 gcaattaaac aaataccggg aaaaccaata attaattcaa ttaacttgga aggtgatgga
      421 agtcgatttc attccttagc tcctcttatg ataaaatatg gagttcctgc tattgcaatg
      481 tgtattggac ctaatggaat ggctaaaact ccaaaagaaa aactggaaac tgcatgtcta
      541 ttatttgaga caggcaaaaa atatggacta aaaccttggc aatttatatt tgatgttcta
      601 acctttactt tggctaccgg tcaagaggag tttctagatt ctgcaaaaaa tactttagag
      661 ggaattaaac tagtaaagga aaacctgcct ggttgtttca ctactttggg attaagtaat
      721 gttagctttg gtctacctac acacgcaagg aaaataatca attctgtatt tttatatcat
      781 gcaataaaat ctggtttgga ttctgtaatt attaatccaa aggatatagt tgcctattca
      841 gatattaacc aagaagaaag aagacttgca gaaaatttaa tctttaacct tagaaataca
      901 gctttatcag atttaatttc ctattatgaa aataaaacaa atactgaccc aacaaaaaaa
      961 caatctgatg gaaattcaaa acttgatatt gatccaaatt ggaaatttga taaaaaatgt
     1021 tactatagaa tagtaaatag actccgtgaa ggaatagaat atgatgttgt aggtgcaatt
     1081 ttagaaaatg ttaaagataa ggacacaaaa gctgaaatat ccttaacaga agcaacaaca
     1141 tcaccatcct cctcttcctc ctcctcctcc tcatcaacat cgttattatc caatcatgat
     1201 gttattgctc atttatctaa ggaacaatta catacagcag cagtaaagac tttgaatgaa
     1261 actttacttc ctgcgatgaa ggaagtcggt gataaatttg gtgcgggaga aataattctt
     1321 ccttttgttc ttaaatcggc agaatgtatg aaggctgctg tagcagagtt agaaaagtat
     1381 cttattaaaa agaaagatgt ttcaaaagga aaaattgtat tatgtactgt ttatggtgat
     1441 gtccacgata taggaaaaaa tctagttaaa acaattctag tgaataatgg atattctgtt
     1501 tatgatttag gtaaacaagt accattacaa acaattgtta ataaaattag tgaagtaaat
     1561 gctgatgcag tgggattgtc agccttactt gtttctacct ccaaacagat gcagatattt
     1621 gttgattatg caaaggaaca taatttacaa ataccagtac tttgtggagg tgctgctatt
     1681 aatactaact atataaatag aatagcaaag gacggcggag gaatttatga acaaggtgtt
     1741 ttctattgta aaactgcttt tgatggtctg aatgtaatga ataatttaac gtccgacaaa
     1801 aggaatcaat atattaccaa atggaaagaa aaagtagagc tatggaaaga gttcaaacca
     1861 gcctcaataa atgtatctga ggtttccaaa catagcggta tcaaacctgt tcctccaccc
     1921 attccacccc atacaggtct tccaattcga ttaggtcttg aaaata
//
LOCUS       DATCMF010000355         1506 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_309872, whole genome shotgun sequence.
ACCESSION   DATCMF010000355 DATCMF010000000
VERSION     DATCMF010000355.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1506)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1506)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1506
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_309872"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..476)
                     /locus_tag="VIL14_04485"
     CDS             complement(<1..476)
                     /locus_tag="VIL14_04485"
                     /inference="COORDINATES: protein motif:HMM:NF014408.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8522998.1"
                     /translation="MNYSPLTKNDKEEMLKRIGVRSINDLIMDLKPSLNEKLDLSKPM
                     SELELVEHLRNISQKNKIMKYFIGAGAYNHYIPSAVNHLLMRGEFLTGYTPYQAEMNQ
                     GTLHTMYEFQSFICLLTGMDIANASLYEGSSALAEAVLLSSSYNGRNCIFIKDGLNP"
     gene            complement(488..898)
                     /gene="gcvH"
                     /locus_tag="VIL14_04490"
     CDS             complement(488..898)
                     /gene="gcvH"
                     /locus_tag="VIL14_04490"
                     /inference="COORDINATES: protein motif:HMM:NF002270.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0019464 - glycine decarboxylation via
                     glycine cleavage system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system protein GcvH"
                     /protein_id="HEY8522999.1"
                     /translation="MNENIRFTKEHEWIVIKEGIAIIGISDFAQSQLGDIVSIELPKV
                     GSIFRRMQSMAIIDSVKASSDIYCVMSGEIVEVNEELLEHPEWINQSPYELGWIVKLK
                     PTNMEEFHNLMTNEQYNKFIGETEENREKDQSGG"
     gene            complement(940..>1506)
                     /locus_tag="VIL14_04495"
     CDS             complement(940..>1506)
                     /locus_tag="VIL14_04495"
                     /inference="COORDINATES: protein motif:HMM:NF013720.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage T C-terminal barrel
                     domain-containing protein"
                     /protein_id="HEY8523000.1"
                     /translation="NFTITNIFGIECIISRTGYTGEDGFELFFDSSKIEIWDKLIQLG
                     SKINIKPAGLGARDTLRLEAGLMLYGNDMDENTTPLEVPLKWTVKFEKNEFVGKKALI
                     NQQINRKLVGFEVLEKRVARHGNEVLMNSKKIGFVTSGTFSPTLKKSIGFCFVPIYVN
                     PNELIEINIGGKLYKAKVLSSTRFYKRK"
BASE COUNT          444 a          291 c          208 g          563 t
ORIGIN      
        1 ggattgagtc cgtcctttat gaaaatgcaa ttccttccat tataagatga tgatagcaat
       61 acggcttctg ccaatgcaga tgaaccttca tacaaagaag cattagctat atccatgcct
      121 gttagaagac agatgaatga ttggaattcg tacattgtat gtagagttcc ttggttcatt
      181 tctgcttgat agggagtata tcctgtaaga aattctcccc tcattaacaa atgatttact
      241 gcagagggaa tataatgatt gtaagctcca gccccaataa agtatttcat gatcttattc
      301 ttttgtgata tgtttctcaa atgttctact aattcgagtt cgctcattgg tttagaaaga
      361 tccagttttt cattaagaga cggctttaaa tccatgatta aatcatttat agatcttact
      421 ccaattcgtt ttaacatctc ttctttgtca tttttagtta atggtgagta attcattata
      481 attgatatca tcctccgctt tgatcttttt ctctattctc ttctgtttcg ccaataaatt
      541 tgttatattg ttcattggtc attaaattgt ggaattcctc catattagtt ggttttaatt
      601 ttacaatcca gcctaattca tatggtgatt gatttatcca ttcggggtgt tcaagcaact
      661 cctcgttaac ctctacaatt tcaccactca taacacaata aatatcagaa gacgccttta
      721 ccgaatcaat tattgccatt gattgcatac gtcggaatat gctaccaacc ttaggcaatt
      781 ctatggaaac tatatcgcca agttggctct gagcaaagtc tgatattcca ataattgcta
      841 ttccttcctt gattacaatc cattcatgtt cttttgtaaa tcttatattc tcattcacaa
      901 agatctattt ttaatgttat tcaagccata aaaaattttt tattttcgct tatagaatcg
      961 tgtactacta agaactttag ctttatacaa tttaccacca atattaattt cgattaattc
     1021 attggggttg acataaattg gcacaaaaca aaagccaatc gactttttta aagttgggga
     1081 aaatgttcca cttgtaacaa aaccgatctt tttgctattc attaatacct catttccatg
     1141 tctagctact cttttttcta gaacctcgaa tcctactagc tttctattaa tttgctggtt
     1201 tatcaaagct ttttttccta cgaactcatt cttttcaaat tttactgtcc atttgagtgg
     1261 gacttctaaa ggagtagtat tttcatccat atcatttcca taaagcatca aaccagcctc
     1321 tagtctgagt gtatctctgg ctcccaaacc cgcgggttta atattaattt tggaacctaa
     1381 ctgtatgagc ttatcccaaa tctctatttt tgaagaatca aaaaatagct caaaaccatc
     1441 ttctcctgta taacctgtcc ttgatattat acattctatt ccaaaaatat ttgtaatagt
     1501 aaaatt
//
LOCUS       DATCMF010000356         2435 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_574961, whole genome shotgun sequence.
ACCESSION   DATCMF010000356 DATCMF010000000
VERSION     DATCMF010000356.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2435)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2435)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2435
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_574961"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(81..365)
                     /locus_tag="VIL14_04500"
     CDS             complement(81..365)
                     /locus_tag="VIL14_04500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523001.1"
                     /translation="MTNSNVFAQKNGFTEEVNLLNQAIPALENQDKNAKKTLFDAEEI
                     MEDKLKDNPDAVTAEKRIEAAIKMVGEDNFQAALDHTKEAIKSLNELNNK"
     gene            547..996
                     /locus_tag="VIL14_04505"
     CDS             547..996
                     /locus_tag="VIL14_04505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523002.1"
                     /translation="MNIQHLLIYILAAIVLSTSIIYFILASNEYKSLVEFAAEGLDGE
                     ISELQIEIALFAGSAIIYLGLLGWILVKKLKSILPYSILIVLSTVLIITYAASRTVGV
                     PVIGIEFYIGKYDMITKVLQGVIIALSGYLIYRIMTGNKQEEIITKT"
     gene            1107..1421
                     /locus_tag="VIL14_04510"
     CDS             1107..1421
                     /locus_tag="VIL14_04510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HEY8523003.1"
                     /translation="MEKPKRFSSEYTMLAIIEYLCLYSRKRPISKYHIMTKISEIKQQ
                     RPDRISLILNKLEQNGYLESIDTPNAKFYLITEKGFDAYLKWIKEFLTFVRIINNDED
                     TN"
     gene            complement(1418..2254)
                     /locus_tag="VIL14_04515"
     CDS             complement(1418..2254)
                     /locus_tag="VIL14_04515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523004.1"
                     /translation="MKKNESTRDKIDDNLDNHSAVLLTQYSSKASQLIKTFTKNIHFL
                     ILILFVITGMTILDLSMDLGFINVLSDETIDAIIIGTSLFLIAFTILIVRPVYRSQNI
                     LEKWSNLFDKNAIRTGIILSINNKNKEEILSALSETIEQIATPLQNYLSKSDNKEFFD
                     ISINDTTFDILIDKSTIKSVDANSLKNTIQDYGSIIIKITDGAVDKAVTLGFIQSLQK
                     YSRQEGNKIGLAMIIGESITPESYELVSKTKDKIINENLILIEKPTTTDPDLMNLNNV
                     LH"
BASE COUNT          854 a          333 c          336 g          912 t
ORIGIN      
        1 agttttccat ttataaaaat aatggtttga gacttaattg agaaagaaaa gaaaaataat
       61 cttacgttac catgtatttt ttatttatta ttaagttcat tcaagctttt aatagcttct
      121 ttggtgtggt caagtgctgc ctgaaaattg tcttcaccta ccattttaat tgcagcttct
      181 attcgttttt ctgcagtgac agcatctgga ttatctttta gtttatcttc cattatttct
      241 tcagcatcaa ataatgtctt ttttgcattt ttatcctgat tttctaatgc aggtatcgct
      301 tgatttagta gatttacttc ctctgtaaat ccgttctttt gagcaaatac attggaattt
      361 gtcattgtaa aaattgacag actaattaca gttgacatta cgagtacaaa tactttggtt
      421 gtagatgatt tcataataaa ctgcaaaacc aaattctata aaaagagtag tgtaacttag
      481 ttacgaatgt taacaatatt gttatatcaa tgcttttatt ataatttttt taaacttatt
      541 caacaaatga acattcaaca tcttttgata tacatacttg cagcaatcgt cttatcgacc
      601 tcaataatat attttatttt agcatcaaac gaatacaaaa gtttagtcga atttgctgca
      661 gaaggattgg acggtgaaat atctgaactt caaattgaaa ttgcattatt tgctggatca
      721 gccataatct atctaggttt attgggatgg attttagtta aaaaattaaa aagtatactg
      781 ccttattcaa ttctaatagt cctttctact gtactaataa ttacatatgc tgcctctaga
      841 acggtaggag ttcctgttat aggaatagaa ttctatattg gtaaatatga tatgataaca
      901 aaagtattac aaggagtaat aattgctcta tctggctatt tgatataccg aataatgacg
      961 ggtaataaac aggaggagat cataacaaag acataaacgg taaaataacc tcatattcat
     1021 ttcctcatta ttcatttcca aaatatctct agtaataatt ataaaatata taataccttc
     1081 tttactttaa aaattaggta taatgattgg aaaaaccaaa gaggttctct tcagagtata
     1141 ctatgttagc tataatagaa tacctttgct tatattctag aaaaagacca attagtaaat
     1201 accatataat gacaaaaatt agtgaaataa aacaacaacg tcctgatagg atttctttga
     1261 tccttaataa actagaacaa aatgggtatc tagaatcaat cgatacacct aatgcaaaat
     1321 tttatctaat tacagaaaaa ggatttgatg cttatttaaa atggattaaa gaatttttga
     1381 cttttgtaag aattataaat aatgatgaag atacaaatta atgtaacaca ttattcaaat
     1441 tcatcaaatc aggatctgta gtagtaggct tttctattag tattagattt tcattaataa
     1501 ttttatcttt agttttacta actaattcat aactctctgg agtaatactt tctccaatta
     1561 tcatggctaa tccaattttg tttccttctt gtctactata cttttgcaat gattggataa
     1621 aacctagagt gacggcttta tcaacagcac cgtctgtgat tttaattatt atactcccat
     1681 agtcttggat agtatttttt aacgaatttg catctacaga tttaatcgtt gatttatcga
     1741 ttaaaatatc aaaagttgta tcgttaatgc taatatcaaa aaattcctta ttatctgatt
     1801 ttgaaagata gttttgtaaa ggtgtggcaa tttgttcgat agtttctgat aatgcgctca
     1861 aaatttcttc tttattctta ttgttgattg aaagaattat gccagtacga atcgcatttt
     1921 tatcaaagag gtttgaccat ttctctaata tgttttgtga tctatacact ggccttacta
     1981 ttaaaatagt aaatgcaata agaaataggg atgtaccgat tataattgca tcaattgttt
     2041 cgtcagataa aacattaata aatcccaagt ccatagataa atccaaaatt gtcattcctg
     2101 taattacaaa tagaattagt ataagaaagt ggatattctt tgtaaatgtt ttaattagtt
     2161 gcgatgcctt tgaactatat tgtgtaagta atacggctga atgattatct agattatcat
     2221 caattttatc tctggttgat tcattttttt tcattaagat aataaaattt atgtaaccaa
     2281 atatataaag aatgatataa ctatcttata taattaaaaa aactgttata aaaaaattgg
     2341 atccagataa tttagtctca gccatacttt aagaatttta aagcaaacat gagtatatat
     2401 tttaaaagat gatttgatgg ttattatctg cccta
//
LOCUS       DATCMF010000357         1569 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_309918, whole genome shotgun sequence.
ACCESSION   DATCMF010000357 DATCMF010000000
VERSION     DATCMF010000357.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1569)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1569)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1569
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_309918"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..307
                     /locus_tag="VIL14_04520"
     CDS             <1..307
                     /locus_tag="VIL14_04520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523005.1"
                     /translation="KECIHIIHTDDVGDKIHIEYIRPIRLTIEDFMQLYSIDNKTITV
                     INNETGSLNKEILTLDNYDIQYSYFSEKNEFTKISNSTLMPPFTKDMVVKMELTSKR"
     gene            375..1400
                     /locus_tag="VIL14_04525"
     CDS             375..1400
                     /locus_tag="VIL14_04525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate/isopropylmalate family dehydrogenase"
                     /protein_id="HEY8523006.1"
                     /translation="MGQKKAVVIKGDGTGPELVKCMIDVLQSCNSTIELIPVEAGSEF
                     WEKNKTNSYITDDVWKLLSESDACFKGPTTTVPDPHAPRSVAVSIRQKFELYANIRPI
                     KTYKTSQLNLNFVCVREATEGLYAGIEFKTSDDSAVAIRKITRKGCERVVKKAFELCT
                     ELDFKKIFVITKRNILKETDGIFVSAVEKIKQDFNGIEIEEYYIDNVTQQLVKNPQRF
                     NNSILLSTNLFMDIISECASGHVGSIGNVYSGNYGDKYAMFEPAHGSAPKYAGQDKVN
                     PVATICSAAWMEEYLGEKDISKAIFKATEEVINENKFVTYDLGGNASLSQMAKQISQR
                     ASRLLKK"
BASE COUNT          607 a          212 c          269 g          481 t
ORIGIN      
        1 aaaagaatgt attcatatca ttcatacaga tgacgtagga gacaaaatac atattgaata
       61 tattagacct attaggctta cgatagaaga ttttatgcag ctatattcaa ttgataataa
      121 aacaataact gtaattaata acgaaacagg atcattaaat aaagaaatac tcacgttaga
      181 taattacgat attcaatatt cctatttctc tgaaaaaaat gaatttacaa aaatctctaa
      241 ttctacattg atgccacctt ttactaagga tatggtggta aaaatggaat taacatccaa
      301 aaggtgaaac taaaaagggg ttacgatcca cataatatat aaatagaaac gttcaagtca
      361 gattttgatt atttttggga caaaaaaaag ccgttgttat aaagggggat ggtaccggcc
      421 cagagctggt aaagtgtatg atagatgttt tgcaatcgtg taacagtact atagaactta
      481 tacctgtaga agcgggatct gaattttggg aaaaaaacaa aacaaattct tacatcactg
      541 atgacgtttg gaaattatta tctgaaagcg atgcttgttt taaagggcct accactaccg
      601 ttccagatcc tcatgcccct aggagtgtag ctgttagcat tagacaaaaa tttgaactgt
      661 atgctaatat tcgaccaata aaaacataca aaacttcaca attaaatcta aatttcgttt
      721 gtgttagaga ggcaacagaa ggtttgtatg caggaataga atttaaaacc agtgatgatt
      781 ccgctgtggc gattagaaaa ataacgagaa aaggatgtga acgggtggtt aaaaaagcat
      841 ttgaattatg tactgaatta gatttcaaga aaatatttgt tattactaaa agaaatattt
      901 taaaagaaac cgatggaata tttgtatcag cagtagagaa aattaaacaa gattttaatg
      961 gtatagaaat agaagaatat tatatagata atgttactca acaattagtc aagaatcctc
     1021 aaagattcaa taatagtata ttattaagta ctaatttatt tatggacatt atttctgagt
     1081 gtgcttcagg acatgtcgga tcaatcggga atgtttattc tggaaattat ggcgataaat
     1141 atgccatgtt cgagcctgct cacggtagtg ctccaaaata cgcaggtcaa gataaagtaa
     1201 atcccgtagc cactatttgt tcagctgctt ggatggagga atatttaggt gaaaaagata
     1261 tatcaaaagc tatttttaaa gctactgaag aagtgataaa tgaaaataaa tttgttactt
     1321 atgatttagg tggaaatgct tcactatccc aaatggcaaa acaaatttct caaagagcct
     1381 caagactatt aaaaaagtga ttagacgaca tcagtaaata cttaaggtag atttatgata
     1441 cttaattcat atacataaag agtttcataa aatattctcc tcttgttaat tactttccca
     1501 ttgatttttt tttcaaaaat aaacttatct aactttggaa tatcagataa agatgaaaca
     1561 attaaaatc
//
LOCUS       DATCMF010000358         2459 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_575061, whole genome shotgun sequence.
ACCESSION   DATCMF010000358 DATCMF010000000
VERSION     DATCMF010000358.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2459)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2459)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2459
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_575061"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..431
                     /locus_tag="VIL14_04530"
     CDS             <1..431
                     /locus_tag="VIL14_04530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY8523007.1"
                     /translation="GIDEMHGVVVLAATNRADMIDPALLRPGRFDKIIYVPNPDIKTR
                     EKILELNVQGKPISNDLNLKRIAELTDGFSGADVAAVVNTAISLVLHEYIDKYPNPEE
                     ASKHTMEAYVAMRNFEDAVRKVRSQRDMKPGMKASHLQYG"
     gene            611..2311
                     /locus_tag="VIL14_04535"
     CDS             611..2311
                     /locus_tag="VIL14_04535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEY8523008.1"
                     /translation="MELIQISNITKKISTTKKTIRHTQSICPDCNMILDAEVFERDGK
                     VYMTKTCPSHGECEELYFGSVDMYKKFSTYWKDGKGAHAPNVMVDKCACPTNCGLCTN
                     HLSHSGLSNMIVTNRCDLTCWYCFFYVKKGLEGAYLYEPNYEQIRAMMKTLKAERPIA
                     GNSIQVTGGEPMLRDDIVDVIKIMKEEGVDHVQLNTNGIKLALSPETMREVRNAGVSN
                     LYLSFDGVTPRTNPKNHWEVPYTLESARKCGMTVVFVPTVIKSINDHELGGIIRFAQK
                     NMDVVHAVNFQPVSLTGRMGKKEREKYRITIPDCIERIEEQTNGEISTDSWFPVPSCM
                     PMTDVIEAFSKKPKYELSIHFACGAGTYVFEDVQTKKLIPLTSFVDIKGLLEYFEEKA
                     DELRSGANRYWAMLDVMRKLNQFVDRSKQPHGLNLAKMFSSILLKRNFDAVGSWHVRS
                     LFLGMMHFQDKYNEDLERLQRCDIHYLTPDLRIIPFCAFNVIPEWYRDRIQKKYSIPV
                     EEWEKAHGQTLEAGLYRGLMRRGKPEAQMGCAVSEMHKAAAESEDHRAVDLRTGMAGA
                     "
BASE COUNT          890 a          350 c          473 g          746 t
ORIGIN      
        1 atggaattga tgagatgcat ggtgtagtag ttttggctgc tacaaatagg gctgatatga
       61 ttgatcctgc actattacga cctggccgat ttgacaagat aatttatgta cccaatccgg
      121 atattaaaac aagagaaaaa atactggaat tgaatgttca aggaaaaccc ataagtaatg
      181 atcttaacct aaaaagaata gcagaactaa cagatggatt tagtggagct gacgtagctg
      241 cagttgtaaa tactgctata tcccttgtac tacatgaata tattgataaa taccctaatc
      301 cagaggaagc atctaaacat acaatggaag cttatgttgc tatgcgtaac tttgaagatg
      361 ctgtaagaaa ggtaagaagc cagagagata tgaaaccagg aatgaaagca agtcatttac
      421 aatacggtta aataaaatta taggtagaac ctattttatt aatatatttt tttaagataa
      481 taataataat aataatcaaa gtaataaatt atgaatacct aacctaatca ccttcggatt
      541 gatataatta tatttatata ttaaaagaat ttagagtgat caattaaaag gtaaaaaggt
      601 aagaatagtt atggaattaa tacaaatatc aaatattaca aaaaagatat caactactaa
      661 aaaaaccatc aggcatactc aaagtatatg tcctgattgc aacatgattc tcgatgcaga
      721 agtattcgaa agagatggca aagtctatat gacgaaaaca tgtccgtcgc atggagaatg
      781 tgaagagcta tattttggat ctgtggatat gtataaaaaa ttcagtacat attggaaaga
      841 cggaaagggt gcacatgctc caaatgttat ggtagataaa tgtgcatgtc ctacgaattg
      901 tggtttgtgt accaaccatt tatcacattc tggactgtct aatatgatag taactaacag
      961 atgtgattta acatgttggt attgtttttt ctatgtaaaa aaaggtcttg aaggtgccta
     1021 tctttatgaa ccaaattatg aacaaattag agcaatgatg aaaactttaa aagcagaaag
     1081 acccattgca ggaaactcta tacaagttac tggtggggaa ccaatgcttc gagacgatat
     1141 tgttgacgtt attaaaataa tgaaagaaga gggagtagat cacgttcaat taaatactaa
     1201 tggtatcaag ttagcgcttt ctcccgaaac aatgcgcgaa gtacgaaatg ctggtgtaag
     1261 taatctttat ctatcttttg atggtgttac gcctcgtact aaccctaaaa atcactggga
     1321 agtcccttat actctagaat ctgctagaaa atgtggaatg actgttgttt ttgttcctac
     1381 cgttattaaa tcaataaacg atcatgagtt aggtggaata attagatttg ctcaaaagaa
     1441 tatggatgta gtccacgctg tcaactttca acccgtttca ctcacaggaa gaatgggcaa
     1501 aaaagaacga gagaaatata gaattactat tcctgattgc attgaacgaa ttgaagagca
     1561 aactaatggc gaaatttcta ctgattcttg gttccctgtc ccctcttgta tgcccatgac
     1621 cgatgtaatt gaagcattta gcaaaaaacc aaaatatgaa ttatcgattc actttgcatg
     1681 tggtgcaggt acttatgttt ttgaagacgt ccaaactaag aaattgattc cacttacatc
     1741 atttgtcgat attaaaggat tattagaata tttcgaagaa aaagcagatg aattgcgttc
     1801 aggtgcaaac cgatattggg caatgctaga cgtaatgaga aaattaaatc aatttgtaga
     1861 tagaagtaaa cagccgcatg ggctcaatct agctaagatg ttttccagta ttctgctaaa
     1921 acgtaatttt gatgcagtag gttcttggca tgttagatca ttatttttag gaatgatgca
     1981 ttttcaagat aaatataatg aagaccttga aagattacaa cgatgtgata tacattattt
     2041 aactcctgat cttagaatta ttccattctg tgcttttaat gttatacctg aatggtatcg
     2101 tgatagaata caaaagaaat atagtattcc agtagaagaa tgggaaaaag cacacggaca
     2161 gactttagag gctggattat accggggatt aatgagacgt ggcaaaccag aagcacaaat
     2221 gggttgtgct gtttcagaga tgcataaagc agcagctgaa agcgaagatc atcgagcagt
     2281 agacttaaga actggcatgg ctggagctta aatcttcaat tttatttaag gttattgttc
     2341 taattagttt aagtatttct ataaaagtta attatttttc acaagactta tactattttt
     2401 ttaataaagt ttaattgatg ttagttagtg gaataagaat atgtctacaa tgaaatatg
//
LOCUS       DATCMF010000359         1654 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_575094, whole genome shotgun sequence.
ACCESSION   DATCMF010000359 DATCMF010000000
VERSION     DATCMF010000359.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1654)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1654)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1654
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_575094"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..196
                     /locus_tag="VIL14_04540"
     CDS             <1..196
                     /locus_tag="VIL14_04540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523009.1"
                     /translation="VLILFLNTINMSKEEIINKSENEWRNELTPEEYQICRMKGTELL
                     LLENTGILKIMEFINVFVVV"
     gene            236..439
                     /locus_tag="VIL14_04545"
     CDS             236..439
                     /locus_tag="VIL14_04545"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: protein motif:HMM:NF013780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0033743 - peptide-methionine (R)-S-oxide
                     reductase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase"
                     /protein_id="HEY8523010.1"
                     /translation="MAKFFYSNQQRKCRLKLDTSYGMNRIEVRCKKCQAHLGHVFDDG
                     PNPTGNRFCINSASLEFEKDRLK"
     gene            complement(699..1193)
                     /locus_tag="VIL14_04550"
     CDS             complement(699..1193)
                     /locus_tag="VIL14_04550"
                     /inference="COORDINATES: protein motif:HMM:NF012573.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005509 - calcium ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="calcium-binding protein"
                     /protein_id="HEY8523011.1"
                     /translation="MYNILKINIVTFLAILISNIFTIEFANSQPISMEGTSSNDKIIG
                     REGNDHIEGGEGNDVLDGWFGDDEIEGGEGNDNLKGGKGNDKLYGDEGKDILKGYLGN
                     DSLVGGEGDDKLDGGKGADLLEGSEGRDSFICDSEDVIIDFNHQEGDSIDGACRYDYI
                     PKQL"
BASE COUNT          642 a          214 c          200 g          598 t
ORIGIN      
        1 tgttttaata ttatttttaa atactattaa tatgagtaaa gaagaaatca ttaataaatc
       61 ggaaaacgaa tggaggaatg aactcactcc agaggaatat caaatatgta gaatgaaagg
      121 gacagaattg cttttactgg aaaatactgg aattctaaag attatggaat ttataaatgt
      181 gtttgttgtg gtataattta ttttcatcgg aaactaaatt taattctggt agaggttggc
      241 caagtttttt tactccaatc aacaaagaaa atgtagactg aaacttgata ctagttatgg
      301 aatgaataga attgaagtaa ggtgtaaaaa atgtcaagct catttaggac atgtatttga
      361 tgatggccca aatcccacgg gaaataggtt ttgtatcaat tctgcctcac tagaatttga
      421 aaaagataga ttgaaataat taaatgctat aacattaata atattattaa aaataattca
      481 tctattaact taattttagt taaagagaaa gtttttatca ataaaatttc ttatatttaa
      541 gaaaagcaag ctagaaaatt aatactaata ttgatttggt cattatgaaa attatatgat
      601 tataaaactg ataaataaac ctgaaagtgg aaatacaaaa aactaaggtt attgtatata
      661 taaacttaga ttttattatt tattatatta taaaatcact atagttgttt aggaatataa
      721 tcatatctgc aagccccatc tattgaatct ccttcttgat gattgaagtc tattattaca
      781 tcctcagaat cacaaataaa actatctcta ccttcactac cctctagtaa atcagcacct
      841 ttaccaccat ctaatttatc atcaccctct ccgcctacta atgaatcatt tcctaggtaa
      901 ccttttagaa tatccttacc ttcatctccg tatagcttat cattaccttt accacccttt
      961 aagttatcat ttccctcacc tccttctatc tcatcatcac caaaccaccc gtctaataca
     1021 tcatttccct cacctccttc aatatggtca tttccttctc taccaataat tttatcatta
     1081 ctggatgttc cttccataga tataggctga gaattagcaa attctattgt aaaaatattt
     1141 gatattaata tagctagaaa agttacaata tttattttta atatattata cattttatat
     1201 tctatattat caatttatct gtatttatat acaattataa aagatattta ataattagta
     1261 gagtacaatt aaagagattt tcttatatta taatcttttt aatctatctg aagtacaaaa
     1321 atgtaaataa tatcatatta taatatacta aaaaataata atataagaaa aagtaactta
     1381 atggagaata gattgtaaaa atatataata gcaataaatt taggggattc ggtatgtatt
     1441 tataaattgt ataagataga gataaattgt ataagataga gataggaaca aataagaata
     1501 taataacatg attaattcta ttgctgattt tgagagtgaa aatattttga taaagtattt
     1561 actctataaa atatttaatc tatttataaa atttatattt gcatataaaa ttgtaagatg
     1621 attaaggttt gtagcttttg tcaaaataaa agaa
//
LOCUS       DATCMF010000360         2287 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_310324, whole genome shotgun sequence.
ACCESSION   DATCMF010000360 DATCMF010000000
VERSION     DATCMF010000360.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2287)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2287)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2287
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_310324"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..200)
                     /locus_tag="VIL14_04555"
     CDS             complement(<1..200)
                     /locus_tag="VIL14_04555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523012.1"
                     /translation="MVICIVSLFILTGIFIPKSDVFAQVISNDLEESNVYIQLSNILD
                     NTEKDLGNIVEAINSGEKDNAL"
     gene            551..676
                     /locus_tag="VIL14_04560"
     CDS             551..676
                     /locus_tag="VIL14_04560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523013.1"
                     /translation="MASVNGIQLHYVTGGKGDPIVLLHGWLQTWYEWQPYYVRFS"
     gene            complement(812..1072)
                     /locus_tag="VIL14_04565"
     CDS             complement(812..1072)
                     /locus_tag="VIL14_04565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEY8523014.1"
                     /translation="MKYRSRTEIVGNILEAANGGTTKTKIMYKAFISYNQLKEYLSVL
                     IENNLIEYRDGTQIFKTTEKGLNLLKMHNEMGELLYTTVKNV"
     gene            complement(1292..1648)
                     /locus_tag="VIL14_04570"
     CDS             complement(1292..1648)
                     /locus_tag="VIL14_04570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523015.1"
                     /translation="MMEMIQSSTAIAIFIATIFISSLVTISAFAQAQSMNQSMNNAGG
                     GSTNQTMTNMSQESNQTLKEMNQSANQTGEAIQHNASEFGANISEGAKELGTNITEGV
                     KNLAENIGEKLQDLAK"
     gene            complement(1645..1809)
                     /locus_tag="VIL14_04575"
     CDS             complement(1645..1809)
                     /locus_tag="VIL14_04575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523016.1"
                     /translation="MGTDKDIKIETDEDVGLDDKIKAGARALGKKIEDPDRDTGSEYE
                     AEKIKERVVD"
BASE COUNT          778 a          346 c          281 g          882 t
ORIGIN      
        1 tttaatgcat tatctttttc tccagaatta atcgcttcaa caatgttacc taaatccttt
       61 tcagtattgt ctaatatatt agatagttga atatagacat tagattcttc taaatcattt
      121 gatataactt gagcaaaaac atcggattta ggaataaaaa ttccagttaa aataaataga
      181 ctaactatac aaatgaccat agttctgata tatatcatta aaattacatt cagttaataa
      241 tatataaaaa ttcctgtaat ctacattatc tctgaatctt tattaacctg caattgcaaa
      301 aacatattat aaaacccaag actgcatcaa atgtaggaag ccattttctt acgattcttg
      361 ttttgtaatc gtaataattt ttagctcatt aacattaaac ttgaatcata ctgcaatagc
      421 acaacaacag gagcaataac agcaattaag tatatctaag aataatcaaa ctctatctca
      481 tgctaaacaa taacaatctt ttgttgaaga tttatctttt gatattgatg atttgacttt
      541 ttcataccat atggcatctg tgaatggtat tcaacttcac tatgttacag gtggtaaagg
      601 ggatccaata gtcttattgc atggttggct acaaacatgg tatgaatggc aaccatatta
      661 tgtcagattt agctaaaaat tatactgtca tagtgcctga tttacgtaga gtagtgagtc
      721 ttcaaaacct gtaactggtt atgatagtaa gaccactgga gaagatatat atcaattggt
      781 atctttatta tattgaataa tagaaaatta actaaacgtt tttgactgta gtatataata
      841 attctcccat ttcattatgc atttttagta agtttaatcc tttttctgta gtcttgaata
      901 tttgagtccc atcacgatat tctattagat tgttttctat caaaacagaa agatattcct
      961 ttaattgatt ataacttata aacgctttat acataatttt tgtcttagtt gttcctccat
     1021 tagctgcctc taatatatta cctactattt ctgttctgct tctgtatttc atatataata
     1081 catatatgat ttacttattt taatctattg tccataaaaa ggataagaaa aattatagta
     1141 gaactattaa caaatattca caaatagtat aaaattaatt aattctttta tttccatata
     1201 acaataaatt taacgttaag taaagatata ctattgaagt aaataattat aatataatat
     1261 aaaagaagga gttaaaaata gttagttaat tttactttgc taaatcttgt agtttttccc
     1321 caatattttc agcgagattt tttacacctt ccgtgatatt agttccaagt tcttttgctc
     1381 cttcactaat attggctcca aattcactag cattatgctg aatcgcttca cctgtctgat
     1441 ttgctgattg gttcatctct tttaatgtct ggtttgattc ttgactcata tttgtcattg
     1501 tttgatttgt tgagccacca ccagcattat tcattgattg gttcatactt tgtgcttgtg
     1561 caaatgctga aatagttacc agagaagaga taaatatagt ggcaatgaat atggctattg
     1621 ctgttgatga ttgaatcatt tccatcaatc aactactctt tctttaattt tttctgcttc
     1681 atattctgag ccagtatctc tatcaggatc ttcaatcttt ttacctaatg ctcttgctcc
     1741 tgcctttatt ttatcgtcta agcctacatc ttcatcggtc tcaattttta tatccttatc
     1801 ggttcccatt gtaattgttg ttattcatta taatttatag caattagata ttgttaatac
     1861 ataataattt tatgtataat taatactaat aaaaatatat taaaatgtta taataaaatt
     1921 aacgttattt aaaaagctgg tcgtactact actcatatta ctcatgcttt agatgacaaa
     1981 tactagaatc ttgagcaatt acatggaaat gaaggatctc atctagaact agaaagccat
     2041 atctcttgta taaatttgaa taatgttact aatttagttt ttataatatt gaactagttt
     2101 tttattcatc tttcttctat aataataaaa tcagatataa tatcaaaaga tataataaac
     2161 aatttagatt aaaaatatta cttttaccat tacaaagcca ttgggaggag aacttgtgca
     2221 tgggtgtaat acccattctc ccaagtgatc atctcattat aattaccata ttataatatt
     2281 acaaata
//
LOCUS       DATCMF010000361         4347 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_310365, whole genome shotgun sequence.
ACCESSION   DATCMF010000361 DATCMF010000000
VERSION     DATCMF010000361.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4347)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4347)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4347
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_310365"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..402
                     /gene="hsp14"
                     /locus_tag="VIL14_04580"
     CDS             <1..402
                     /gene="hsp14"
                     /locus_tag="VIL14_04580"
                     /inference="COORDINATES: protein motif:HMM:NF041799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0042026 - protein refolding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="archaeal heat shock protein Hsp14"
                     /protein_id="HEY8523017.1"
                     /translation="IVIIMGIATYMVKEVMKEINNKSKEFYEFILPPVDMVEDSNDLL
                     VIIDLPGFNKNDITLRINKNVLSIKANKPDNEYRGTVYLKHRPTKIDKKVILPFLVDE
                     DEEITGTANYSDGIIMLRIPSKNLGNRIPIS"
     gene            complement(496..1452)
                     /locus_tag="VIL14_04585"
     CDS             complement(496..1452)
                     /locus_tag="VIL14_04585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HEY8523018.1"
                     /translation="MCGLINLKNNKAQGELKYDIQAKSKNINVKSSILKQQNQKETNN
                     TKTQFKAKGTIDKLPIVCDVETLRTLIRKKTVRVVDVRRIEDYKKGHIPTAVSLPLAN
                     LLSNDSPEQIVKLLENLGIYDEMPVVVYDDTFGALAARVAWTFQYVGHENTSLLEMTY
                     TNWKNLGLEIENRINKFPETPHSLKLNQSIYADATYVESIQNNPDKVLVDSRERLNFL
                     SEHIPSAKNIPYTMLGNDNHILRSVDELKRFVENRGISQDSEAITYCGSVGTLSGLAF
                     YALKLAGIKNVKLYSKSFKDWKSLGKPKIEFKDANYWDLSAE"
     gene            complement(1440..3275)
                     /locus_tag="VIL14_04590"
     CDS             complement(1440..3275)
                     /locus_tag="VIL14_04590"
                     /EC_number="1.8.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0050311 - sulfite reductase (ferredoxin)
                     activity [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrite/sulfite reductase"
                     /protein_id="HEY8523019.1"
                     /translation="MKKNEELTKVNHEKDSFVKPREKWGLEKETDNFANKVKLYRQGK
                     LSDDDFRRFRLQHGAYGSRLRPDYSMIRIKIPSGEITPEQLEKIANLSEAFSIGSAHV
                     STRQNIQLHWVQLEDVSEVMRGLVEVGLTTREACGNTVRNVMCSHFAGVCPDEVFDAT
                     PYSTAIAKFLLRNPMSQNLPRKFKINFGCCNKHGLVRIADIGLVPDLKDGKKGFRIYL
                     GGGLGAASFIGHLLEDFTFEEQLLSTCMATIRLFDRLGNRDNMARNRMRYLVNEIGWE
                     KFQKMVLKERNIVEMTISEFTKNLYQVHFNDSYVPINKSTKFNKLPIVETNISTINNR
                     YDRWLHTNVVPQKQEGYFTIFITLGAGDITANQLRSLASLIRKFSSESIARNTPQQNF
                     AIRYIYANDLPDVYKKLMAIGLANPGALTITSAVGCSGTTSCNLAITNSHRLAKEVQR
                     TLLELGFDVDNDLRNSTIKISGCPNSCGQHEIATIGFFGGAARIENSMAPVYTMLFGG
                     NGYEDGKLGKAIMRVPAKRVIEVIQKIVELYKTEKSSSETLDMWIDRIINSNGSGNIK
                     NIDDIKTLLTPVTQLPPFEEGQEFYQDYGNDIKFVAKTARGECAA"
     gene            complement(3427..3963)
                     /locus_tag="VIL14_04595"
     CDS             complement(3427..3963)
                     /locus_tag="VIL14_04595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (cytidine(56)-2'-O)-methyltransferase"
                     /protein_id="HEY8523020.1"
                     /translation="MNIAVLRIGHRLVRDDRTTTHVALVSRSFGCNLLYMTDVNDDIK
                     STIEDVNNRWGHASNFKIEIVKGWRNVILNWKKNGGVVIHLTMYGLNVDDIIGKIKDN
                     SNDILIIVGAEKVPKEIYTLSDYNIAVGNQPHSEISSLAIVLDRIFEGKQLKLNFESA
                     KIKIIPSLREKLVEKNYF"
     gene            complement(3965..>4347)
                     /locus_tag="VIL14_04600"
     CDS             complement(3965..>4347)
                     /locus_tag="VIL14_04600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HEY8523021.1"
                     /translation="FVNKLPAYMIDAFKSTLHELVFSKLILLVIDISQTIKNIRINLN
                     SCLHIINELQIPSTKILYLLNKVDLTTVNDAYEKAKMLDLKYPNNIVLPISAKTGYNV
                     NKILDLIDMLIYGNNLEIQKKGDL"
BASE COUNT         1418 a          721 c          599 g         1609 t
ORIGIN      
        1 atagtaataa ttatgggtat tgcaacatat atggttaaag aagttatgaa agaaattaat
       61 aacaaatcaa aggagtttta tgaatttatt ttacctcctg tagatatggt agaagatagt
      121 aatgatttgc ttgtaattat agatttacca ggatttaata aaaatgacat aactcttaga
      181 ataaataaaa atgtgctttc tatcaaggcc aataagcctg ataacgaata ccgaggtaca
      241 gtttatttaa aacatcgtcc tacaaaaata gataaaaaag ttattttgcc ttttttagtt
      301 gatgaggatg aagaaattac tggaactgct aattattctg atggaattat aatgttgaga
      361 attccgagca aaaatctggg aaatcgaata ccaatttcct aataaataca tatgagagaa
      421 ctgaatcctt tgatataaaa ttataatttt acaaattctt tataatttgt ttactttatt
      481 ttatttattt attaattatt ctgctgataa atcccaataa ttagcgtctt taaattcaat
      541 ttttggtttt cctaatgatt tccagtcttt aaatgattta gaatataatt ttacattttt
      601 tatacctgct aattttaatg cataaaatgc aagaccagat aacgttccta cactaccaca
      661 ataagtaatt gcttccgaat cttgagaaat tcctctattt tcaacaaaac gttttaattc
      721 atcaacagat cgcaaaatat ggttatcatt tcccaacata gtatatggaa tatttttagc
      781 gctagggata tgttcagata gaaaattaag ccgttctcta gaatcaacta ataccttatc
      841 aggattattt tgtatagatt caacataggt agcatctgca taaatagatt gatttaattt
      901 aagagaatga ggtgtttctg ggaatttatt aatacgattt tcaatttcca aacccaggtt
      961 tttccaattt gtataggtca tttccaaaag tgaagtattc tcatgaccaa cgtattgaaa
     1021 tgtccaagca actcgtgctg ccaaagctcc aaaagtatca tcatatacta ctacaggcat
     1081 ttcatcatag ataccaagat tttctaacaa tttgacaatc tgttcaggag aatcatttga
     1141 gagtaaattt gctagaggta aagatactgc agtaggtata tgtccttttt tataatcttc
     1201 tattctacga acatccacaa ctcttactgt ttttttgcga atcaatgtac gtaacgtttc
     1261 tacatcacag acaataggaa gcttatcaat agttcctttc gctttaaatt gtgtttttgt
     1321 attgttagtt tccttctgat tttgttgctt taaaattgag ctttttacat ttatattttt
     1381 agacttagcc tgaatatcat acttaagttc gccttgagct ttattattct ttaaattaat
     1441 caagccgcac attcgcctct agcagtcttt gctacaaatt taatatcatt accataatct
     1501 tgatagaatt cttgaccttc ttcaaatgga ggaagttgag ttactggtgt aagaagcgtt
     1561 tttatatcat ctatattctt tatgttacca cttccattac tgtttataat acggtctatc
     1621 cacatgtcta atgtttctga agaggatttt tcagttttgt atagctctac aattttttga
     1681 attacctcta ttactctttt tgctggaaca cgcataatag ccttacctaa ttttccatct
     1741 tcataaccat taccaccaaa taacatagta tacacaggag ccatagaatt ttctattctt
     1801 gcagcaccac caaaaaagcc aatagttgca atttcgtgct gtccacaaga attcggacaa
     1861 ccacttattt taatagttga attacgaaga tcgttatcaa catcaaaacc taattccaat
     1921 aacgtccttt gaacctcttt agctaatcta tgtgaattag ttatagccag attacaagag
     1981 gtagtacctg aacagcctac tgcggatgtg attgtaaggg ctccaggatt agctaatcca
     2041 atagccataa gttttttata gacgtctggc aaatcattgg cgtaaatata tctaattgca
     2101 aaattttgtt gtggagtatt tcttgcaata gactctgatg agaatttacg tattagtgat
     2161 gctagagatc ttagttgatt agctgttata tcacctgcgc caagtgtaat aaatattgta
     2221 aaatagcctt cttgtttttg tggaactacg ttcgtatgca accatcgatc gtaacgatta
     2281 ttaatagtag aaatatttgt ttccacgata gggagtttat tgaattttgt tgacttattt
     2341 attggaacat atgaatcatt aaagtgaact tgataaaggt ttttagtaaa ttcagaaatg
     2401 gtcatttcta caatattacg ttcctttaat accatttttt gaaatttctc ccaaccaatt
     2461 tcatttacta aatagcgcat tctatttctg gccatattat ctctgtttcc tagcctatca
     2521 aatagtctaa tagttgccat acaagttgat aaaagttgtt cttcaaaagt gaaatcttct
     2581 aaaagatgac ctataaacga ggcagcacct aatcctccgc caagataaat tctaaatccc
     2641 ttttttccat cttttaaatc aggtactaaa ccaatgtcag ctatccttac cagaccgtgt
     2701 ttattacagc atccaaaatt aattttgaat tttcttggta aattctgaga cattggatta
     2761 cgtaagagga attttgcaat tgctgttgaa taaggagtag catcaaaaac ttcgtcagga
     2821 caaacacctg caaagtggct acacattaca tttcttacag tattaccaca agcctctcta
     2881 gttgttaaac ctacctctac taatcctctc ataacttcgc tgacatcttc caactgtacc
     2941 cagtgcaatt ggatattttg tctagttgaa acatgtgctg atccaataga aaatgcctca
     3001 gataaattgg ctatcttttc tagttgttct ggagtgattt cgccactagg aattttaatc
     3061 cttatcatac tatagtcagg tcttaatctt gatccatatg ctccatgctg aagcctaaat
     3121 cttcgaaaat cgtcatctga caactttcct tggcgataga gtttaacttt attagcaaaa
     3181 ttatcagttt ctttttctaa accccatttt tctctaggtt taacaaaaga atctttttca
     3241 tggttaactt tagttaattc ttcattcttt ttcaatatac tagttagtta atacaaaacc
     3301 ttatattttt tatggaatca caacttaaaa aattaactga cttcatatta gatggcaagt
     3361 tattgtatga atattatagt ttattaaacg ggtatgtaac aatgaataaa attatgattc
     3421 tttatttcaa aaataatttt tttctactag tttttcccga agtgaaggaa taatttttat
     3481 tttggctgat tcaaaattta acttgagttg ttttccttcg aatattctat ctaaaacaat
     3541 agcaagcgaa gatatttcgg aatgtggctg attacctaca gcaatattgt aatcagaaag
     3601 tgtgtaaatt tcctttggaa ctttttcagc tccaactatt attaaaatat cattactatt
     3661 atccttaatt ttaccaatga tatcatctac atttaatcca tacattgtaa gatgtataac
     3721 tacaccgcca tttttcttcc aatttaatat tacatttcgc caacctttga ctatttcaat
     3781 tttaaaattt gatgcatggc cccacctatt atttacatcc tctattgtag attttatatc
     3841 atcattaaca tcagtcatgt atagaagatt acaaccaaaa gatcgagaaa ctaatgctac
     3901 atgagtagtt gtacgatcat ctctgactaa tctatgacct attcgaagta ctgctatatt
     3961 cattttataa atctcccttc ttttgtattt ctaaattgtt tccataaatg agcatatcta
     4021 ttagatccaa tattttattt acattatagc cagtttttgc tgatataggt aaaacgatat
     4081 tattgggata ttttaaatct aacatcttag ctttctcata ggcatcattt acagtagtta
     4141 aatcaacttt atttagtaaa tacaatattt ttgttgatgg aatttgtaat tcatttatta
     4201 tatgaagaca gctattcaaa tttattctta tatttttgat agtttgactg atatctataa
     4261 ccagcaaaat caatttagaa aaaacaagtt catgtaaagt agatttaaaa gcatctatca
     4321 tataagctgg taatttgttt acaaatc
//
LOCUS       DATCMF010000362         2385 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_377870, whole genome shotgun sequence.
ACCESSION   DATCMF010000362 DATCMF010000000
VERSION     DATCMF010000362.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2385)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2385)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2385
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_377870"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1541
                     /locus_tag="VIL14_04605"
     CDS             <1..1541
                     /locus_tag="VIL14_04605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="helix-hairpin-helix domain-containing protein"
                     /protein_id="HEY8523022.1"
                     /translation="YDELKEKLPVDVSQFFGLEGIGPKTIKTLYGNLGIKNIFDLEKA
                     ALEGKIKSIPGFSQKKEELILKKIQFFRKGGGRRLIGEVYPLVRRIEERLSGNTGVKQ
                     AVAVGSFRRMKETIGDIDFLVSVMSEKDGDNIIDYFVNMPEVNEISGKGLSKAFVKLN
                     NGIDADLLVVPQESFGAAMQYFTGSKEHGVAMRKIAISKGLRLNEWGVFDRQNHRVAG
                     ATEEEVYQVLGLHWIPPEMRENKGEINLAKMGKNGMEKEEEKVRLSQLIAYDDLKGDL
                     QVHSNNTDGTMSIEEMALNARDKFGLSYIAISDHTKSLRLTNGLDEKQLLNQANTIAE
                     LNDKINVNNSNKHFRILSSAEVNILKDGSLDISNNVLDKLDIVGAAIHSHFSLPIELQ
                     TARLISAAQNPSIDIIFHPTGRIINRREGYPVNISKLIEVANESNTILEIDAHYDRLD
                     LKDEFIRMAVENNVKLVIDSDAHHPLHYAFLIFGIGQARRGWAKKSDILNTLSAKGLL
                     DSLK"
     gene            1813..2127
                     /locus_tag="VIL14_04610"
     CDS             1813..2127
                     /locus_tag="VIL14_04610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523023.1"
                     /translation="MLDREEILRSLFSNAIEDTIETLPYTIQVFQDPLYDLKKTVTND
                     LDFLLGAFFAQVLLFYSVYCSNNKDIKPTIEESQQFHYELFSKAEEYKNIIRELMIRD
                     NT"
BASE COUNT          895 a          311 c          442 g          737 t
ORIGIN      
        1 attacgatga actaaaagaa aagttgcccg tagatgtcag ccaatttttc ggtttagaag
       61 gtattggccc aaaaacaata aagacgcttt atggtaatct aggcattaaa aatatctttg
      121 atttggaaaa ggctgcgtta gaaggcaaaa ttaaaagtat tcctggattt tctcaaaaga
      181 aggaggaatt gattctaaag aagattcagt tttttagaaa aggtggagga cgacgactaa
      241 ttggtgaggt ctatcctctg gtaaggcgaa tagaggaacg gctttcagga aatactggag
      301 taaaacaagc agtagctgtc gggtcattta gacgaatgaa agaaactata ggagatattg
      361 attttttggt gtcagttatg tccgaaaaag atggagataa tataattgat tatttcgtaa
      421 atatgcctga agttaatgag ataagcggaa aaggattatc taaagcattt gtcaaactaa
      481 ataatgggat tgatgcagat ttacttgttg tacctcaaga gagttttggt gcagcgatgc
      541 aatattttac cggtagtaaa gaacatggag tagctatgag aaaaatagcc atatctaaag
      601 gtcttcgtct caatgaatgg ggagtttttg acagacagaa ccatagagta gctggagcta
      661 ctgaagaaga agtatatcaa gtattgggcc tacattggat tcctccggag atgcgagaaa
      721 ataaaggaga aataaatcta gcaaaaatgg ggaagaatgg aatggaaaaa gaagaagaga
      781 aagtaaggct cagccaatta atagcatatg atgatttgaa aggagactta caagttcata
      841 gcaataacac tgatggtaca atgtctatag aagaaatggc attaaatgca agagacaaat
      901 ttggattgag ttacattgca atctcagatc atacaaaaag cttgaggctt actaatggac
      961 tagatgaaaa acaattgtta aatcaagcaa acacaattgc agagctaaat gacaaaatta
     1021 atgtaaataa tagtaataag cattttcgta tattatcttc tgcagaagta aatattctaa
     1081 aggatggatc acttgatatt tccaataacg tcttggacaa actagacata gtaggtgctg
     1141 ctattcattc tcatttttct ttaccaatag agttacagac agctagactc ataagtgcag
     1201 ctcaaaatcc tagtattgat attatatttc atcctacggg cagaattatt aatcgaagag
     1261 aaggatatcc tgttaacatt tccaaattga ttgaagtagc aaacgaatcc aatacaatcc
     1321 ttgaaattga tgctcattat gatcggttag atttaaaaga tgaattcata cgaatggctg
     1381 ttgaaaataa cgttaaattg gtaattgatt ctgatgctca tcatccttta cattatgctt
     1441 ttctaatatt tggtatagga caagccagaa gaggatgggc taagaagtct gatatactta
     1501 ataccctgtc agctaaagga ttacttgata gcctcaagta gcagaccgga gcattcatcc
     1561 tgtactggtt aacaaataga aaccgatcca atgatattta gtgttaatac tgacaatatc
     1621 atctataatt cattttcatt agcttatata ttggttctgt attttatatg ataaaagtaa
     1681 ttaacaggag ttaacagaga taacgaaaat attttcctat aaatactaaa tatttgaaag
     1741 gctacagaaa gatttcttta tagtagatga actaacaaaa caaatttttt aacaagttta
     1801 tattattgat aattgttgga tagagaagaa attcttagaa gtttattttc taacgccatt
     1861 gaagatacaa tagaaactct accttataca attcaagtat ttcaagatcc attatacgat
     1921 ttaaagaaaa cagtaactaa cgatttggat tttcttttag gagcattctt tgcacaagta
     1981 cttttgtttt attctgttta ttgttcaaac aataaagata tcaaaccaac aattgaagaa
     2041 tcacagcaat ttcattatga attattttcg aaagcagaag aatacaaaaa tataattaga
     2101 gaattaatga taagggataa tacttaaagt tttcaattag attttaaagg aaaggtaaaa
     2161 gatagtaatg gtttttgtat tatccataag ttacttaata atcaatataa tctcttgaca
     2221 gaaataaatg taaatttatt atccataatt cactaaatca gacagattgt ggagaaaata
     2281 caagagtaag agtctttaac cttttttttg attgctttaa tcatttgagg ataagatcag
     2341 tcttcttttt atacgtatca tcatagtaag atggaagtca agtat
//
LOCUS       DATCMF010000363         3634 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_113211, whole genome shotgun sequence.
ACCESSION   DATCMF010000363 DATCMF010000000
VERSION     DATCMF010000363.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3634)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3634)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3634
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_113211"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..488
                     /locus_tag="VIL14_04615"
     CDS             <1..488
                     /locus_tag="VIL14_04615"
                     /inference="COORDINATES: protein motif:HMM:NF013077.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HEY8523024.1"
                     /translation="KPIPEEIVDKLIANAHRAPSAGHTQVQEFIIVQERLIKEKLGEA
                     ALNQEQVYEAPLLIVVCANTSRSIDRYGKRGREFYSIIDGAFASMLILLTAVNEGIGA
                     CFVGAFLDDKVSEILELPEYVKPIGIIALGFPAEDPSKFKRIDISKLVHYEKYSNQKQ
                     K"
     gene            963..1328
                     /locus_tag="VIL14_04620"
     CDS             963..1328
                     /locus_tag="VIL14_04620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523025.1"
                     /translation="MSNNGDNSQVSTKSISIENNNKESIDKYKEKAKSFTDKIVNKIS
                     HRDDIRRNEIAEDKSSNVRFITFGLFTLIGFIVVIYAILVAVVADTTLQSANVFFVVT
                     ILSISILAGILVYQIGPIK"
     gene            1772..3409
                     /locus_tag="VIL14_04625"
     CDS             1772..3409
                     /locus_tag="VIL14_04625"
                     /inference="COORDINATES: protein motif:HMM:NF017760.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY8523026.1"
                     /translation="MVEREGQPHEEENIPASGLSPLKSSLYRTLWIAALFLFIGAAMY
                     DVGASWLMTSLAPNPLFVSLITTATTLPIFLFALPSGTLSDIFDRRSILLISCVYMFT
                     ISTILGMLTLVGVTTPTVLLILTFALGAGLTMIRTPIIPIMSGLVSSSELPSALTLSA
                     VAGNIGRVVGFAVGGFIVAAIAPWAVFFLNSASFIGMIIVLSRLPRKSNGHQQSSLPP
                     ENIIRAIRAQIRYVRYSQAAHVLIVRAGLFTLCSSALLSLLPLLAKNELKLDSTGFGL
                     LLGSFAMGAIIGGIVILPKLRPKVSVDSLITGSIGLLAMVIFTTGYIRDFAILCIVLG
                     LGGVAYITILSKFYTIGMKSAPKWIGARVLAVYLLILNGGLAVGSVIWGTIANIFGIP
                     ITLSVASLALAATIIARKRYSITLLDDLDFTPASDHWSLPPELSVDLSQNDSQALITI
                     DYKIDPKLSDEFEQSVRELGRILKSEGMAYWELFQDTADIGHYIEIRIADTWTDHMRQ
                     HERVTKNVQVMEDRIRELIKDGPQPIISHYIGKSTHK"
BASE COUNT         1173 a          547 c          631 g         1283 t
ORIGIN      
        1 ataaacctat tcctgaagaa attgttgata aattaattgc taatgctcac agagcaccaa
       61 gtgcaggtca tactcaggtt caagaattta taatagtaca agaacgtttg ataaaggaaa
      121 agttaggtga agctgcttta aaccaagagc aagtatatga ggctcctctt ttgattgttg
      181 tttgtgcaaa tacttctagg tctattgaca gatatggaaa aagaggaaga gaattttata
      241 gtataataga tggtgccttt gcttctatgc ttattttact aactgcagta aatgaaggaa
      301 ttggtgcttg ctttgttggt gcatttctag acgataaagt ttcagaaata cttgaattac
      361 cagaatatgt aaagccaata ggaataattg cattaggatt tcctgcagag gatcctagta
      421 aatttaaaag aatcgatatt tctaagttag tccattatga aaaatattca aatcaaaaac
      481 agaaataatg agttattgta gataagtatc ctaaataatt ttttttaaat tggtggtata
      541 acagaaatta atgaatgtag tttaacggaa aaaaatttgt attattaata tagatcatga
      601 gaatagacac ctaataaatt caaatgaaat taatttatca attagctatt tattttttct
      661 cgaatgatag tcaactgatt ttgataaaat tttgtagtac agttaaaaaa tttttattat
      721 ttaaattatt actctcattg aatagggtta agtagcataa taccataagt ttttgaaagt
      781 tttgagttat ttctgtttaa gaatttatat gatcaatgat tcaattgagg aaatgggatt
      841 tgaaactttg ttttgctgtc tataatttac aaaattcgta gtattagatg gtttattttt
      901 gtatatcttc agcttttgat atgtgttata attgtaataa gttataatgt taacatatat
      961 tcatgagtaa caatggcgac aattctcaag tgtcaactaa atctatatca atagagaaca
     1021 ataacaaaga atctattgac aaatataaag aaaaagctaa atcctttaca gataaaatcg
     1081 taaataaaat atcacataga gatgatatta ggagaaatga aattgcagaa gataaatcat
     1141 cgaatgtaag atttataact tttggtttat ttactttgat tggttttata gtagttattt
     1201 atgccatatt agtcgcggta gtagcagaca caacgcttca atctgcaaat gtattttttg
     1261 tagttactat attaagtatt tctatattag ctggaattct tgtatatcag attggtccaa
     1321 taaagtagta tattcattaa gtatattcta aattatccat atttaccatg ttttttatat
     1381 actttaaaag atgttattga acactactag tatacgagct tgtagggctt caaattctca
     1441 ttataacagc gttaggtaac ataataaata ttatttaggt ataattcaat aaccaaaaga
     1501 tcatatacta ataataattt gattgattag aaatgtaatt aatattaatg ttttaaatta
     1561 atcaatttac atcttattaa attcgactgg ttcttttatt gttgtatgta gtggtattca
     1621 ggtagtaagt catatgacca ttgaggctaa gatggcaatt gaaaaagctg ataaagtatt
     1681 agcatccagt tcattgtatt cttgacaata caatacaatg ctttagactt tatagaaaaa
     1741 tgtatgacta agtgttgctt acttatttcc tatggttgaa agagaaggac aaccacacga
     1801 agaagaaaat attccagcat caggtttgag tcctttaaaa tctagtttgt ataggacgtt
     1861 gtggattgct gccctttttt tatttattgg tgcagctatg tatgatgtag gagcgtcgtg
     1921 gttaatgact tcacttgctc caaatccttt attcgtttct ctgatcacaa cagcgactac
     1981 tctaccaatt tttctctttg cattaccatc tgggacatta tctgatattt ttgaccggcg
     2041 tagcatactc cttatttctt gtgtatacat gtttacaata tccacgatac taggaatgct
     2101 cactcttgtt ggtgtgacta ccccaacggt attgttgata cttacttttg cgctaggagc
     2161 aggtctaact atgattagga ctccaattat tcctatcatg agtggactag tatcaagctc
     2221 agaactacct tctgctctaa cccttagtgc tgttgctggt aacataggac gtgtcgttgg
     2281 tttcgcagtt ggtggtttta ttgtagcagc aattgcacct tgggctgtct tttttcttaa
     2341 ttcagcttca tttattggaa tgattatagt cctaagtaga ttaccaagaa agtctaatgg
     2401 ccaccaacaa agctctctgc ctcctgagaa tataattcga gctattcgag ctcagatacg
     2461 ttatgtacgc tattctcaag cagcacatgt attaattgtt cgtgcaggtt tattcacatt
     2521 atgtagtagt gcgttattat ctctcttgcc actcttagct aaaaatgaat taaaacttga
     2581 ttctacaggt tttggacttc tattaggatc ttttgctatg ggtgcaataa ttggtggaat
     2641 tgtaattttg ccaaaattgc gacccaaggt ttccgtagac tctcttatta cgggttccat
     2701 agggttactt gcaatggtaa tattcacaac gggctatata cgagattttg ctattctttg
     2761 tatagtccta gggctaggag gagtagctta catcactata ttatcaaaat tttataccat
     2821 tggaatgaaa tctgcgccaa aatggattgg agccagagta ctagcagttt atctgcttat
     2881 actaaatggt ggcttggcag ttggaagtgt aatatggggt acaatagcta acatatttgg
     2941 catcccaatc accctgtcag tagcttcgtt agcattagcg gcaactatta ttgctaggaa
     3001 gcgttacagc ataactttat tggatgacct cgattttaca ccagcaagtg accactggtc
     3061 acttcctcct gagctctcag ttgatctttc acaaaatgac agtcaagcct taataacaat
     3121 cgactataaa attgatccta aattatctga cgaatttgaa cagagtgtac gtgagttagg
     3181 acgtattctt aagagcgagg gaatggccta ttgggaatta ttccaagata cagcagatat
     3241 tggtcactat atcgaaatca gaattgcgga tacctggact gaccatatgc gtcagcatga
     3301 acgagttacc aagaacgttc aggttatgga agatagaatc cgagaactta tcaaagatgg
     3361 tcctcaacca ataatctctc attatatagg aaaatctact cacaaatagt tcaccagttt
     3421 atatagtcca actttttatt gtaattatta gacttgtctt attttcagac atataatttc
     3481 attattttct ttcaagttaa agtgagatta ttcatttcac agaataactt cgttgctata
     3541 taataatttt aaatagttga tccagatatt tctcctcgtt taacactctc cttttgaaat
     3601 tcaatgaatc gtataaaatt ttgctcggcc cagt
//
LOCUS       DATCMF010000364         1565 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_510958, whole genome shotgun sequence.
ACCESSION   DATCMF010000364 DATCMF010000000
VERSION     DATCMF010000364.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1565)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1565)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1565
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_510958"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(154..903)
                     /locus_tag="VIL14_04630"
     CDS             complement(154..903)
                     /locus_tag="VIL14_04630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523027.1"
                     /translation="MSLFANPSQNLKNAINWFNDLRKEEQVSILTNLEENPEALTNEQ
                     NEQLTIIALEIAGALPYGQNPIIKKFTELGLPQVHASLIVNAITTKSVLPKLDAKKLL
                     SLNDQNYEKAIESVIVKLFIENNPIDKILEYSGLDNQILAASLRFIRDNILFLYLRGE
                     MAIDNLRKVLHDQLNFPDNRINILVNILEQNKETIWKNFVFRNTQETYFKMQVLERNQ
                     IELISQIQQLIQLLKGTKEGSSQEQRPAHIA"
     gene            complement(1232..1540)
                     /locus_tag="VIL14_04635"
     CDS             complement(1232..1540)
                     /locus_tag="VIL14_04635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523028.1"
                     /translation="MIFNNTKTNNNNYSNNNSNKNLAKIDQHIFDINNVIRKICKEQV
                     LKTIDDRGVDILTEGDIKSVYDTAIISVIHKFITISNECEKIYLQECYQAGKEAGKLR
                     "
BASE COUNT          495 a          229 c          205 g          636 t
ORIGIN      
        1 gtgatatata ttatttaata atatgaacat tttgttttta ttactagtag tagaattaat
       61 tgtcatagcc tcactatgtg ctacaagcaa gcaagcaagc aagcaattta caatactatc
      121 gtaagataaa gcacattaat gaatttaaat tgtttatgcg atatgagcag gtctttgttc
      181 ttgacttgat ccttctttag tcccttttaa taactgaatt agctgctgaa tttggctaat
      241 taattctatt tgatttcgtt ccaaaacttg cattttgaaa tatgtttctt gagtgtttct
      301 aaacacaaag tttttccaaa tagtttcttt attttgttct aaaatattga caagtatatt
      361 gattctatta tctggaaaat tcaattggtc atgtaatacc tttcttaaat tatctatggc
      421 catttctccg cgtagataca agaataaaat attatcacgg ataaatctta aagatgctgc
      481 taaaatttgg ttatccagac ctgaatattc cagtatttta tcaattgggt tattttcgat
      541 gaaaagtttt acaattacac tttctattgc cttttcataa ttttgatcat ttaaagataa
      601 gagtttctta gcatctaatt ttggtaaaac tgatttggta gtaattgcat tgacaattaa
      661 actcgcatga acctgtggta atcctaattc agtaaatttc ttaatgatag gattttggcc
      721 ataaggtaat gcaccagcaa tctctaatgc aattattgtt aattgttcat tttgctcatt
      781 ggtcaaagct tcaggatttt cttccagatt tgttaaaatt gatacttgtt cttctttcct
      841 taaatcatta aaccagttaa tagcattttt taaattttga gatggatttg caaatagaga
      901 cattgtctaa agatagtatt attaaataaa taaataaatt attaagattt gatttgattt
      961 ttaataagat ttaggttgga taagatggta tctaaaacaa tatcaaattg aatgtcattc
     1021 ttcctctcct cctcctcctt cttcttatct attgtatttt tattttgtat taagaataga
     1081 ttggtggagg ttctaggttg caaaaaatca aattcagaac taaataaatt attagttcga
     1141 atcttctcca taaaagatat gtaaacttct actataaaac cttaattatt ttaactcatg
     1201 agataacctt tattttgctt tcataattat attatctcaa tttccctgcc tcttttcctg
     1261 cttgataaca ttcctgcaaa taaattttct cacattcatt agatatcgtt atgaatttgt
     1321 gtataactga gataatagca gtatcatata ccgatttgat atccccttca gtaaggatgt
     1381 caacacctct atcatcaatt gtttttagga cttgttcttt acatattttc ctaattacat
     1441 tgttgatatc aaaaatatgt tggtcaattt tggcaagatt cttgttagaa ttattattac
     1501 tataattatt attattagtt ttagtattgt taaaaatcat gctggtcctt ctcccatctc
     1561 acttt
//
LOCUS       DATCMF010000365         3932 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_311285, whole genome shotgun sequence.
ACCESSION   DATCMF010000365 DATCMF010000000
VERSION     DATCMF010000365.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3932)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3932)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3932
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_311285"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..695
                     /locus_tag="VIL14_04640"
     CDS             <1..695
                     /locus_tag="VIL14_04640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523029.1"
                     /translation="FERVNQENLYYNFGEIMDLEEKFGIRSTFFFRTYYENGNYLDYE
                     EEITSLLNGKWEIGLHTDGNSIRNLDLLQKEKTNLEILTKKPIFGNRVHYLNFDNKLL
                     SKLYQIGFTYDSTMKKYKNHISIDDMNYMKIDGIIEFPITIMDTYLFSYLGVTEENIL
                     DIFQETISTVTSKNESDNIKIITLLWHDNVLKMKGGRMYKNILEYLTSTNNIKIMRGI
                     DLVNIINKFDKG"
     gene            1175..3418
                     /locus_tag="VIL14_04645"
     CDS             1175..3418
                     /locus_tag="VIL14_04645"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HEY8523030.1"
                     /translation="MSIAEVRHLPKVSGILLVTDKEFFSDIDPLPFSSSSQLLYSCVE
                     EVVKKQLDTFEIIWNKAVSGEKKIAELEKGTVSKVKGELTDENEIKFRMRERIRQMEE
                     EKDQIETRIIETRTQFHNFIISSLKDTIERDWYFQEEILRRIYENYFELFKENLKKTL
                     LLKNMNQNSKSKSSLNKKDNIIGLRCILKITRENMELVAKFLDIEGVYIRHTSNPLPI
                     NFEVSDTQFNLSMRTSNKIDTSYVLSIPDLSIIKYYKFIFEDLWNDGLDARIKIKDMR
                     SNINAEEGFTELIENPYKTQQLLIHHIQKATKEILIILPSINAFFRYRKIGIFSILEK
                     KLLNININNNISNEEENSNKLLVKILTPTNNKLEKNITNIYNRIKKTNKQKENIEFRR
                     VESLSEINTACIIIDKKDLLVIELKDDSKDNFLEAIGSSIYSNTPTTVFSYISIFDTL
                     WTQTELYESIRIANDELQNTTEELRESLQILANVNQELTVTNEILNKHDKMQKEFINV
                     AAHELRTPTQSIIGYCEMIDAFPENTKKYLEPVKRNAEKLYRLTEDILDVSRIESGTL
                     KLEKSKFDLREIIVNLIEDLTAKMKKEENVIKSNKENTDKKTNIQLIYPELSAQPLFV
                     YADKNRIQQVLSNLLSNALKFTEDGIITINTEKFMDAINNNGNNIEKEFVSIKIKDTG
                     KGIDPEVLPRLFEKFATKSDKGTGLGLYISKNIIDAHGGKIWGKDNNKYGKNGAEFGF
                     TLPLYNI"
BASE COUNT         1683 a          432 c          546 g         1271 t
ORIGIN      
        1 tatttgagag agttaatcaa gaaaatttat attataattt tggagaaata atggatttgg
       61 aagagaaatt tggtattaga tctacatttt ttttcagaac atattatgaa aatggaaatt
      121 atttagatta tgaagaagaa attacatctc tactgaatgg aaagtgggaa ataggtttac
      181 atactgatgg taattccatt aggaatttag acttgcttca aaaagagaaa actaacctag
      241 aaattcttac taaaaaacca atatttggaa atagagttca ttatcttaat tttgataaca
      301 aattactatc aaaactctat caaataggat ttacttatga ttcaactatg aaaaaataca
      361 agaatcatat tagtattgat gatatgaatt atatgaaaat tgatggtata atagaattcc
      421 ccataactat aatggacaca tacctatttt catatttagg agtaacagaa gaaaatatcc
      481 tagacatttt tcaagaaact atatctaccg taacatccaa aaatgaatct gataatatca
      541 aaattataac tctactttgg catgacaatg ttttaaaaat gaaaggagga agaatgtata
      601 aaaatatact tgaatatttg acatcaacaa acaatatcaa aattatgcga ggtattgatc
      661 tcgttaatat catcaataaa tttgataaag gttaaaataa acaaaatctg cagtactcta
      721 atcaatccaa ttaaggtaac ctaaaaattc agacaactat tcaaaaatat tcaagcaatt
      781 taatttgggt agaacaaaaa aaatgatgat gataatattt ataatggggt ttactgatgt
      841 cgtatatgaa atataattat tgttgaatag aatatctcaa tatgtatata tataattaac
      901 aagtaaataa agtgatctaa tcctgaatga gacgtatttt ttccataata aaatagaaat
      961 acttcaaggt tcaggagata ttttagaaag aataaataga atattaaata atgcgaaaag
     1021 tattgtaaat gcttgtttaa atccattttt tctacaaagt tatgtaaata atttcaaaat
     1081 acggaataac tatataaatg ctcaaagtaa gcgtgtaaaa cttagatgta ttacagaatt
     1141 cagtgaagat aatatcgaac agtgtaggca gcttatgtcg atcgcagaag ttagacattt
     1201 accaaaagtt agcggtattc tactagtaac tgataaggaa tttttcagtg acatagaccc
     1261 attaccattt tctagttctt ctcaactatt gtatagttgt gtggaagaag tagtaaaaaa
     1321 acaacttgac acatttgaaa ttatatggaa taaagctgtt tccggagaaa agaaaatagc
     1381 agaactagaa aaaggtactg tttcaaaagt taagggagaa ttaaccgatg aaaatgaaat
     1441 taagtttaga atgagagaaa gaattcgaca aatggaagaa gaaaaagatc aaatagaaac
     1501 aagaattatt gaaactcgta cacaattcca taattttatt ataagtagtt tgaaagatac
     1561 cattgaacgg gattggtatt ttcaagaaga aatattaaga agaatttatg aaaattattt
     1621 tgaattattt aaagagaatt taaaaaaaac attattatta aaaaatatga atcaaaatag
     1681 caaatcaaaa tcttctttaa ataaaaaaga taacattatt ggtttaagat gtatattaaa
     1741 aataactcga gaaaatatgg aattggtagc aaaatttctt gacatagaag gtgtttacat
     1801 cagacatacc agtaatcctt tacccatcaa ttttgaagta tcagatacac aattcaacct
     1861 ttctatgcgt acatctaata aaatagatac ttcttatgta ctttctatcc ccgatctatc
     1921 gattataaaa tattataaat ttatatttga agacttatgg aatgacggtt tggatgctag
     1981 aataaaaata aaggatatga gatcaaatat aaatgcagaa gaaggattta cagaattaat
     2041 cgaaaatcct tataaaactc aacaactttt gatccaccat atacaaaaag caactaaaga
     2101 aatcttgatt atccttccat caataaatgc ttttttcaga tataggaaaa taggaatatt
     2161 tagtatttta gaaaaaaagt tgttaaatat taatattaat aataatatta gtaatgaaga
     2221 agaaaacagt aacaaattat tagtgaaaat attaacccct actaacaata aattagagaa
     2281 aaatataaca aatatttaca atagaataaa aaaaacaaac aaacaaaagg aaaatattga
     2341 atttagaaga gtagaatcat tatccgaaat taatactgca tgtataataa tagacaaaaa
     2401 agatttattg gttatcgaat taaaagatga ttccaaagat aattttttgg aagcaattgg
     2461 atcatcaata tattctaata ctccaactac tgttttttcc tacatctcaa tttttgatac
     2521 tctttggacc caaacagaat tatatgaaag tattagaatc gcaaatgatg aactgcagaa
     2581 taccacagaa gaattgagag aatcgttaca aatattagca aatgtaaatc aagaacttac
     2641 agtaacgaat gaaatattaa ataaacacga taaaatgcaa aaagaattca taaacgtcgc
     2701 agcccatgaa ttaagaactc ctactcaatc tattattgga tattgtgaaa tgatagatgc
     2761 ttttcctgaa aatacaaaaa aatacttaga acctgtaaaa agaaatgctg aaaaattgta
     2821 tagattaaca gaagatatct tggatgtatc aagaattgaa agtggtactt taaaacttga
     2881 aaaaagcaaa tttgatttaa gagaaataat agtaaattta attgaagatc taacagcaaa
     2941 gatgaaaaaa gaagagaatg taataaaatc aaacaaagaa aatactgata aaaaaaccaa
     3001 tattcaatta atatatccgg aattatctgc acagccgtta tttgtttacg cagataaaaa
     3061 tagaattcag caagtacttt ctaatttgtt aagcaatgct ttaaaattta ctgaagatgg
     3121 aataattaca attaatacag aaaaattcat ggatgcaatt aataataatg gaaataatat
     3181 agaaaaagaa tttgtgtcta tcaaaataaa agatacagga aaaggaatag accctgaggt
     3241 attgccacga ctatttgaga aatttgcaac aaaatctgat aaaggaacag gtttgggatt
     3301 gtacatttca aaaaatatca tagatgctca tggaggaaag atatggggaa aggataacaa
     3361 taaatatgga aagaatggtg cagaattcgg ttttacttta cctttataca atatataaaa
     3421 ttaaattctt atatatttct gtgaatgact atcttcccac atagataatg aaatacctat
     3481 tgtataattc ataatgaata ttgttgtgtt cctcttcaat taattaatat tattttaatt
     3541 atttattggt ttgcaaacta acttcatttt gttttatagt agtagtgagc ctatctgatc
     3601 tacttaatat tcaacaagat aggatagtgt gaaaaataat taaaaaatat ttgattagta
     3661 tttagttctg ttgtattata tatctttggc taattaattg taacatttta ttttgtataa
     3721 agtagttata atatttatat tatttattaa tcaatatttc aggaaatatt gatttgtatt
     3781 aattatcttt ttattataat atatttaact tatagtagta attactttaa aatttttatt
     3841 taaaagaaat taatttctaa aaaaaacttt tagctgttgc agattaaacc acttattcat
     3901 ttatattata acaatatcat ttaatttaag aa
//
LOCUS       DATCMF010000366         1981 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_311418, whole genome shotgun sequence.
ACCESSION   DATCMF010000366 DATCMF010000000
VERSION     DATCMF010000366.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1981)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1981)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1981
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_311418"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..268
                     /locus_tag="VIL14_04650"
     CDS             <1..268
                     /locus_tag="VIL14_04650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523031.1"
                     /translation="SNFFFTLLEDGSEAGVDICVNYVGDCEGTIYPGEVKTCTIENYI
                     TEVTFIPPPSEDDNAADNAQSSSLSQQSNNQALQSQLHTLRDIL"
     gene            524..784
                     /locus_tag="VIL14_04655"
     CDS             524..784
                     /locus_tag="VIL14_04655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523032.1"
                     /translation="MTSTSENKLHGTIMIECRGKSRAMIMKNVTNMPNVVRVSKTEDD
                     SNGGILVTVHGSKDDIKKVKNKIWELENNKNIKINSINYSYS"
     gene            826..1356
                     /locus_tag="VIL14_04660"
     CDS             826..1356
                     /locus_tag="VIL14_04660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523033.1"
                     /translation="MHWEIEVIIRVEDVEIDYINEGLLLHHSITDIENPSSIWIKERK
                     ENGKIVEENLLNNQYNYRIEFKAIVFSTEEQESLRRYITRMKGVDSKKMLFKTLTGKE
                     KASKAISVASISAIIVFIIIFSHEYIVSLAHNGHIELSHFSTIIAFSLAGAGATFFID
                     YLIVWKEKFGGLNFNK"
BASE COUNT          775 a          215 c          316 g          675 t
ORIGIN      
        1 ttctaatttc ttctttacac tattagagga tggtagtgag gcgggtgttg atatatgtgt
       61 caattatgtg ggagattgtg aaggaaccat atatcctggt gaggtaaaga catgcacaat
      121 agagaactat attactgaag taacctttat ccctccccca tctgaggatg acaatgcagc
      181 agataatgca caatcatcat cattatcgca acaatccaac aatcaagccc tacagtctca
      241 actccatact ttaagagata ttctctgata gaataaacta aaataacaaa cacaaattat
      301 tattattttt ttttgataag agtcacttac aataatgttt tatatcattg gtaaaattaa
      361 tctatcatca tcagtttcaa tattaattta ctactgatat atacaaaaat atgttataat
      421 atcatattat gactagattt tgattttgaa tgtttaaaaa tgttttgtaa ttttaaataa
      481 tttatgagaa atgtaaatat acaaagtata tgcaaataat cgtgtgacca gtacaagtga
      541 gaataagtta catggtacaa taatgataga atgtagagga aagagtcgtg ccatgatcat
      601 gaaaaatgtt actaatatgc ctaatgttgt tcgtgtatca aagacagaag atgattcaaa
      661 tggtgggatt ttagttactg ttcatggatc taaagatgat atcaaaaaag ttaaaaacaa
      721 aatttgggaa cttgagaata ataaaaatat taaaataaat tcaattaatt atagttatag
      781 ttagtattaa ctttattata ttttaaaatt tcttaatatt cattaatgca ttgggagata
      841 gaggtaatta tacgagttga agatgtagaa atagactaca taaatgaagg attattactt
      901 catcatagca taacagatat tgaaaatcct tcaagcatat ggattaaaga aagaaaagaa
      961 aatggaaaga ttgtcgagga aaatctgctt aacaatcagt ataactaccg tattgaattt
     1021 aaagcgatag ttttttctac agaagaacaa gaaagcctca gacggtatat tactcgaatg
     1081 aagggagtag attctaaaaa gatgttattt aaaacactca ctggaaaaga aaaggctagt
     1141 aaggcaatat ctgtagcatc aatttctgcc attattgtat ttataatcat attcagtcat
     1201 gaatacatag tttcacttgc tcataatggt catattgaat tgagtcattt ttctacgatt
     1261 atagcctttt cactagcagg tgcgggggca acatttttta tagactattt aatagtgtgg
     1321 aaggaaaagt ttggtggtct gaattttaat aaatgaataa ggatcttttt agatagttaa
     1381 aatataattg aaatttgtag atacacttgc taacatagta ttactaaatt agattagtta
     1441 atgtttatca tgatttataa ttactaattt taattctgaa atcaattagg agattaagag
     1501 aaacgatttg tttaaatttt ttgttactaa tgttaataaa atattgctag cgtaacggat
     1561 ttataaatct gactagtttc ttttttgttt gaaggtacaa ttaaagataa aagtttgata
     1621 ttgatttctt gatctcatta tttactttga atatctatag taattaatta attgattaat
     1681 aataaaagaa aaaataaaaa ttaattgact aaataaagaa aaaattgaga aggttgtatt
     1741 atatatgttt caaattagtt agtttagtta attttctatg aaatgaaccc tactgattct
     1801 agacattcta tcaaagaaaa aggaagagaa gataaataac aatgttaatt aaagaattta
     1861 aaagaaattt gcctgagatt atctatctat gtcaaatgaa gataatagag gagaagaaaa
     1921 aggaggaaga atagaaagta atggtttctc caataacgat cataatagca tttttcaaat
     1981 a
//
LOCUS       DATCMF010000367         2272 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_576634, whole genome shotgun sequence.
ACCESSION   DATCMF010000367 DATCMF010000000
VERSION     DATCMF010000367.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2272)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2272)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2272
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_576634"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            281..1135
                     /gene="folP"
                     /locus_tag="VIL14_04665"
     CDS             281..1135
                     /gene="folP"
                     /locus_tag="VIL14_04665"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: protein motif:HMM:TIGR01496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004156 - dihydropteroate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HEY8523034.1"
                     /translation="MTKIGDVSIDRNSVKIMGVMNVSPESFYKNSIKTNVNSISSYVK
                     KLENDGADLIDIGAMSTAPYLDTVITSKIEISRLKKAIKIVRRSCKLPVSVDTPRGKV
                     AEEALQMGADAINDVCGLKYDPKMAEIVAKHNIPVILGAFEKKPSKILTAKSLSTKRI
                     LHDSITIAQTAGIKKTNIIIDPSIGFFRKVGNNPFFTKITKIPWYCRDIEIVYNLKEL
                     AKLSFPVCISLSNKSFLGKLMNLKINERLIPSLIMEVIAVINGATIIRTHNVKETALA
                     LHTLQLLN"
     gene            1258..>2272
                     /locus_tag="VIL14_04670"
     CDS             1258..>2272
                     /locus_tag="VIL14_04670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HEY8523035.1"
                     /translation="MNIREGLTFDDVLLIPKRSPIISRSQTNLKTRLSRNINLNTPVI
                     SANMDTVTESPMAIALAREGGIGIIHRFMTIQDQVDEVLKVKRSESVMIEQPYTISID
                     SSVGYAKKIMNDFGISGLLIEKDKKLAGIITKRDLLFETNFENNISSVMSKDVVFAEM
                     GTTIEKAKYILHKNRIEKLPIIDKDKHIIGLITSQDILKMEEFPNASKDKKGRLLVGA
                     AVGVKGDYLERTEALLDAGADVMVVDIAHGHSDNAINCVHLIKKAFKDCELIAGNIAT
                     GQGTEDLIRAGVDAVKVGVGSGSICITRVITGSGVPQLTAILESVNIAKEYEMPVISD
                     GGIR"
BASE COUNT          832 a          323 c          404 g          713 t
ORIGIN      
        1 caacaagtat cacctatgat atatgctgga atatcaaata gtttcataat cttctttcct
       61 gtttcttgca tcctggggaa taatgcctct ggaccattca gcgctacaga taaaggtttt
      121 ctttttctga ttacttcaaa aactttagct tcatcaattg aaatcaatct acaatcccat
      181 tagaattaaa tctctctccc atattatttt tcatatcatt atcaataatg gagtctattt
      241 tagaagaaaa taatatggag gatacttata tatctgaatc ttgacaaaaa ttggtgacgt
      301 ttcgatcgac aggaattctg taaaaatcat gggagtaatg aatgttagtc ctgaatcttt
      361 ttataaaaat tcaataaaaa ccaatgtaaa tagtatttct agttatgtaa aaaaattaga
      421 aaatgatgga gcagatctaa tagatatagg ggcaatgtca actgctccat atctagatac
      481 agtgattact tcaaaaattg aaatttcaag attaaaaaaa gctattaaga tagtacgtcg
      541 cagttgtaaa cttcctgtat ctgtagatac tcctagaggc aaagtagctg aagaggcact
      601 ccagatggga gcagatgcga taaatgatgt atgtggacta aaatatgatc ccaaaatggc
      661 tgaaattgta gcaaaacaca atatcccagt aatacttggg gcgtttgaaa aaaaacccag
      721 taagattcta acggctaaat ctttatcaac gaaaaggatt cttcatgata gtataacgat
      781 tgcacaaaca gctggtatta agaaaaccaa tattataata gatccatcga taggtttttt
      841 tagaaaagta gggaataatc ccttttttac aaaaataaca aaaataccat ggtattgtag
      901 agatatagaa atcgtctata atttaaaaga actcgcaaag ctctcttttc cagtttgtat
      961 ttctctttca aacaaatcct ttctaggaaa acttatgaat ctaaagataa acgaaagact
     1021 tatcccatct ttaataatgg aggttattgc tgttattaat ggcgcaacaa ttattcgcac
     1081 tcataatgtt aaggaaacag cattagcatt acatacttta caattgctaa attagtatta
     1141 ttttaaattg tttttccatt ataaaatata acttattcaa gttaaaaact tcggataatt
     1201 aaagtgagat tgatgcaaaa cttataattc ttccttctct taataaaaaa atgaatattg
     1261 aatattagag aaggtctaac ttttgacgat gtattattaa tcccaaaacg ttctccaatt
     1321 atttcccgat ctcaaactaa tttaaaaacc agattatcaa gaaatatcaa tttgaatact
     1381 cctgttatta gtgctaatat ggatacagta actgaatcac ctatggccat agcattagca
     1441 agagaagggg gtattggaat tatacataga tttatgacaa tacaagacca agtagatgag
     1501 gtattaaagg ttaaaagatc tgaatctgtt atgatagaac aaccatatac tattagtata
     1561 gattcatctg taggctatgc gaaaaagatt atgaatgatt ttggaatctc tggtctcctt
     1621 atagaaaaag ataagaaact ggcaggaatc attacgaaaa gagatcttct atttgaaact
     1681 aattttgaaa ataatatttc ttcagtaatg agtaaagacg tggttttcgc tgaaatggga
     1741 actacaatcg agaaagctaa atatatttta cataagaaca gaattgaaaa attacctata
     1801 atcgataaag ataagcatat cataggatta ataactagcc aagatatttt aaaaatggaa
     1861 gagtttccta atgcttctaa agataaaaaa ggtcgtttac tggttggagc ggccgtgggg
     1921 gtgaaaggag attacctcga aagaacagaa gcattattgg atgcaggtgc agatgtcatg
     1981 gttgttgata tagctcatgg tcatagtgat aatgccatta attgcgttca tttaataaaa
     2041 aaagctttca aagattgtga gttgatagct ggtaatattg ctactggcca ggggacagag
     2101 gatttaatta gagcaggtgt ggatgcagta aaggttgggg taggctcagg gtcaatttgt
     2161 attactagag ttattactgg ttctggggtt ccacaattaa ccgcaatttt ggagagtgta
     2221 aacattgcta aagaatatga gatgcctgtg atttcagatg gaggtattag ac
//
LOCUS       DATCMF010000368         2165 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_311814, whole genome shotgun sequence.
ACCESSION   DATCMF010000368 DATCMF010000000
VERSION     DATCMF010000368.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2165)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2165)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2165
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_311814"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1594)
                     /gene="gatE"
                     /locus_tag="VIL14_04675"
     CDS             complement(<1..1594)
                     /gene="gatE"
                     /locus_tag="VIL14_04675"
                     /EC_number="6.3.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Glu-tRNA(Gln) amidotransferase subunit GatE"
                     /protein_id="HEY8523036.1"
                     /translation="MNHVTIDMNEIILKVGFEIHQQLSTQNKLFCNCKCLEVENYDSI
                     FLRKLRPAHSELGSYDRASIFEFTKMRTIKYHSSYIASCLVEADEEPPHEINRDAMDT
                     ALIVSLALNSNIIDEINVMRKIVIDGSNTSGFQRTMLISYGGHLQVDGKKIGVQTICL
                     EEDSGKLLSDDGKFREYGLDRLGIPLIEIALEPITGTPTEIVKIALTLGRLLRTTKRV
                     ARGLGSIRQDVNISINNGKGIVEIKGVQRLDQLIKVIEYEKTRQHGLILIAEKMNRER
                     KPNDIIIGDKIMDITNIFIDSSSKTVQKVISNKGNIFMAIRVKGFKGLFGFEPYPDIR
                     IGKELGELVRFYGFGGLFHSDELPNYGITDIEVKKVNEILDIDISKDGFIILGGPREK
                     MSIAISAICDRLNNVSSGVPSETRAARIDGKTIYSRPKLGSARMYPETDISPFKITDD
                     LLVPLKEKVPKSWNETILYLAKKYQLNENLAEKIFDSNYFEIFEVLCDLTKISPSFIA
                     SKLTEDILNLERQGYDSSILNND"
     gene            complement(1628..>2165)
                     /locus_tag="VIL14_04680"
     CDS             complement(1628..>2165)
                     /locus_tag="VIL14_04680"
                     /inference="COORDINATES: protein motif:HMM:NF036996.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Glu-tRNA(Gln) amidotransferase GatDE subunit D"
                     /protein_id="HEY8523037.1"
                     /translation="ISPIAVVQDDRVEIQKIPSNIILHKNKNRNKINKRFNIISKTKF
                     DDRVFLLKYYPGFNPILIENVQKLGYKVIIIEGTGLGHINRNCFSYLKEAIASGMLVF
                     MTSQCIWGRTNLNVYDTGRDLQKIGIIPLSNMLSETAMVKAMWLLANYNDLDYIRNKM
                     QENISNEITFITPIVEEE"
BASE COUNT          680 a          360 c          262 g          863 t
ORIGIN      
        1 tatcattatt taatatactc gaatcataac cttgtctttc taagtttaaa atatcttcag
       61 tgagttttga tgctataaat gatggagaga ttttagttaa atcacaaagt acttcaaata
      121 tttcaaaata gttagaatca aaaatttttt cagctaaatt ttcatttaat tgatatttct
      181 ttgctaagta taaaatagtt tcattccacg attttggaac tttttctttt agaggaacaa
      241 gaagatcatc tgttatttta aatggagata tatctgtttc cggatacatt cgtgctgatc
      301 ctagttttgg tctactgtat attgtttttc catcaatcct agctgctcta gtttctgatg
      361 gaacccctga gctaacatta ttgagtctat cacatattgc acttattgcg attgacattt
      421 tttctctagg tccaccaaga ataataaaac catctttgga gatatcaata tctaatattt
      481 cattaacctt tttaacttct atatctgtta taccataatt aggtagctca tctgaatgaa
      541 ataggcctcc gaatccataa aatcttacta gttctcctaa ttctttacct attcgtatat
      601 ctggatatgg ttcaaatcca aataatcctt taaaaccttt aacacgaata gccatgaaaa
      661 tattcccttt gttagaaatt actttttgta ctgttttaga tgatgaatct ataaaaatgt
      721 tagtaatatc cataatttta tctccaatta ttatatcatt tggttttctt tctctattca
      781 ttttttcagc aattaaaatt aaaccatgtt gtctggtttt ttcatattct attactttta
      841 ttagttgatc taatctctga actcctttta tttctacaat accttttcca ttattaatgg
      901 atatgtttac atcttgtcta atacttccga gtcctctagc tacacgttta gttgtcctca
      961 aaagccttcc taaagtaaga gctattttta ctatttctgt tggggttcca gtaataggtt
     1021 caagagcaat ttcaattagt ggaattccaa gtctatcgag tccatattct ctaaactttc
     1081 catcatctga taataacttc ccagaatctt cttctaaaca aatagtctgt actcctattt
     1141 tttttccatc aacttgtaaa tgaccaccat aagaaattaa cattgttctt tgaaatccag
     1201 aggtatttga tccatcaatc actatttttc tcataacatt tatctcatca ataatgttag
     1261 aattaagagc aagagagact attaatgcag tgtccatagc atctctattt atttcatgcg
     1321 gtggttcttc atctgcttca accaaacagc ttgcaatata ggaagaatga tatttgatcg
     1381 tacgcatttt tgtaaattca aagatacttg ctcgatcata tgatcctagc tcactgtggg
     1441 caggacgcaa ttttcttaaa aaaatagaat cataattttc cacttccaaa catttacagt
     1501 tgcaaaataa tttgttttga gtagataatt gctgatgaat ttcaaaacca acttttaaaa
     1561 ttatttcatt catatcgata gttacatgat tcattgataa aattgtataa ttttaactat
     1621 tagaaattta ttcctcctct acaataggag ttataaaagt aatctcattt gaaatatttt
     1681 cctgcatttt atttctgata taatctaaat cattataatt tgctaaaagc cacatagctt
     1741 ttaccatggc ggtttcagaa agcatattag atagtggtat tataccaatc ttttgtagat
     1801 ctctacctgt atcatagaca tttaggtttg ttctacccca aatacactga gatgtcataa
     1861 aaactaacat tccagaagct attgcttctt ttaaataaga aaaacaattt ctattaatat
     1921 ggcctaagcc tgttccttct ataattatta ctttgtatcc taatttttgc acattttcta
     1981 ttaatattgg attaaatcct ggataatatt ttaatagaaa aactctatca tcaaatttag
     2041 tttttgatat tatattgaat cttttattta ttttgtttct atttttgttt ttatgtaaaa
     2101 ttatatttga aggaattttt tgtatttcga ccctatcgtc ttgtacaact gcaattggag
     2161 aaata
//
LOCUS       DATCMF010000369         2799 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_311899, whole genome shotgun sequence.
ACCESSION   DATCMF010000369 DATCMF010000000
VERSION     DATCMF010000369.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2799)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2799)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2799
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_311899"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            278..739
                     /locus_tag="VIL14_04685"
     CDS             278..739
                     /locus_tag="VIL14_04685"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEY8523038.1"
                     /translation="MTSKILLPHDGTEISDKALEKSKEFAKAFNAELSILHVIQHSPL
                     PPSLILDHDRQWIEESRRNIAKKLEEGWIKMAKEKINPILEKEKIKFNLIVSTDEQPI
                     SEQIVKFASETKIDLIIIGSQRLSEISKIKALGSVSRKVSENVDCPIMIIH"
     gene            828..1190
                     /locus_tag="VIL14_04690"
     CDS             828..1190
                     /locus_tag="VIL14_04690"
                     /inference="COORDINATES: protein motif:HMM:NF016246.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF488 family protein"
                     /protein_id="HEY8523039.1"
                     /translation="MIRTKSIYDPKEESDGIRILITRYWPRGIKKEHFDKWYKELSPS
                     RGLLKKYKDKKMDFPSFEKLFLEEIQNSNVIEICREIAHESIKGNVITFLCYEKDESI
                     CHRKFIKKLCERELSKVR"
     gene            complement(1273..1458)
                     /locus_tag="VIL14_04695"
     CDS             complement(1273..1458)
                     /locus_tag="VIL14_04695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523040.1"
                     /translation="MTYYLDKITLDFVTQMSKYIARVNNRIIKTLDEIEKEEMEIIPV
                     TPTTVSKEQQQEEGIKL"
     gene            complement(1471..2126)
                     /locus_tag="VIL14_04700"
                     /pseudo
     CDS             complement(1471..2126)
                     /locus_tag="VIL14_04700"
                     /inference="COORDINATES: protein motif:HMM:NF015438.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
     gene            complement(2217..2426)
                     /locus_tag="VIL14_04705"
     CDS             complement(2217..2426)
                     /locus_tag="VIL14_04705"
                     /inference="COORDINATES: protein motif:HMM:NF018096.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1059 domain-containing protein"
                     /protein_id="HEY8523041.1"
                     /translation="MITLSCKESGLDCDYIVEGKTEDEVLERISEHALNVHNMKEEDI
                     YEEHIPAAFLCHAIGKMTSIYNKQN"
BASE COUNT          998 a          409 c          402 g          990 t
ORIGIN      
        1 aatttctaaa ataatttaga aggcttcact caatattcaa caggtattta aattaaataa
       61 aaattaagat ggtctctatt ccgttttttc gctattcaat cattttcatc tatttccttt
      121 caaattataa attgttaaag aatgttacat gctgatattt tccatttgta aagcccctat
      181 tcttatctat gagtttattg atatgttaat agatgaacaa aaattacgaa tgttgttgta
      241 aaataaatga aaaaagtgta ggagcggaga acctctgttg acaagtaaaa tattacttcc
      301 tcatgatggt acagaaatct cagataaggc acttgagaaa tctaaagaat ttgccaaagc
      361 atttaatgct gaactttcta tattgcatgt aatacaacat agtcctcttc caccatcact
      421 aattttagac catgatagac aatggataga agaatcaaga agaaatattg caaagaaatt
      481 agaggaaggt tggataaaaa tggcaaaaga aaaaataaat cctatactag aaaaagaaaa
      541 aataaaattt aatctaattg tatcaacaga cgaacaacct attagtgagc aaattgttaa
      601 atttgcttca gaaaccaaaa tagatcttat tattattggt agtcagagat tgagtgaaat
      661 ttcaaaaatt aaagcattgg gtagtgtttc aagaaaagtt tcagaaaatg tcgattgtcc
      721 tataatgata attcattaaa tagtatatgt aatatataat tagacaaatt aataaaaaga
      781 gtatttatta ttgactaggt acctaaattt acttataaat gagtgaaatg ataaggacta
      841 aatctattta tgatccaaaa gaagaaagtg atggaattag aattttaata actcgatatt
      901 ggcccagagg tattaaaaaa gaacattttg ataaatggta taaagaattg tcaccatcaa
      961 gaggtttatt aaaaaaatat aaagataaaa aaatggattt tccttcattt gaaaaattat
     1021 ttcttgaaga aattcaaaat tcaaatgtaa ttgaaatttg tcgcgaaata gcacatgaat
     1081 ctataaaagg aaatgttatt acattcttat gttatgaaaa agatgaatct atttgtcata
     1141 gaaaatttat aaaaaaactt tgtgaacgag aattatcaaa agtaagatga gatcgtatta
     1201 attggttgaa tgattaacag tattattatt gtttagttca atcatattaa aacttctttc
     1261 ttcgacccat ctctataatt tgataccttc ttcttgttgt tgttccttac taacggtagt
     1321 aggagtaacc ggaattattt ccatctcttc cttttctatc tcgtccagag tcttaataat
     1381 acgattgttt actctagcaa tatacttact catttgtgtc acaaaatcca aagtgatttt
     1441 atctaagtag tatgtcataa tatcagtttt tcatttgtgt ttcaattgct caattttttg
     1501 ttggaattca tgtctccatc ctcctggcag atctcttatt tttgttgctc ttttcatggt
     1561 ttcaatattg tttatatcgt tcctagcaat ataaagacta acaatatctt tcactgtgac
     1621 attattttta tctcttctga taatctttat tttgtcatct ctttggactt ccccttctgt
     1681 taatacctta aagtaaatac caggacggcc acttgccata aatcttctaa ttacatccat
     1741 acgtccaaat ctaacaccaa gtttatagca tggcattcta ggttgtgttg ctataagctt
     1801 agcagatcct atttgaaact gatcacctac attacagcat cctcaaataa tccttcagtg
     1861 gtaaaattct ctccaaacat tccccacaca agatccgtgt taggaaattg tttccgccag
     1921 tagacataat gttctgaggg ataagaatat actgccttat caagtccacc atgtactgtc
     1981 aaatcggctt gtttgtcacc atcaaggtta agctttcgta agctaatagg acctttgaca
     2041 ggatccttga aaattgcagt agttataatt tgtccattga agagtatctt ccttgggagt
     2101 ccaacattta cagaaagtac tttcattatt agatatagag attacttatt atttataata
     2161 aatagtagat catatattct tagtaactgg attattataa tatacataga attaatctaa
     2221 ttttgcttat tataaattga tgtcatttta cctattgcat ggcataaaaa agcggcaggt
     2281 atatgttctt cgtatatgtc ttcttctttc atgttatgaa cattgagagc atgttcagaa
     2341 atacgctcca agacttcatc ttctgtttta ccttctacaa tgtaatcgca atctaatcca
     2401 gactctttgc aagataatgt tatcataata tcttttctaa aagatgttag gcaactaaat
     2461 attaaagtat ttcaataaga tctcaatagt agtcatctag tggattaaga aattgcttca
     2521 taaatccttg atattataaa ggttttgagg gcttcaattt ctcattataa cagggctagg
     2581 taacataatt gggatcggaa aactagtatt taattttagt atccagatga aggatatagc
     2641 ctaaactcat aatgatcaat acgggagttg gaatttgaac ccgttacttg tattcacaag
     2701 tttataggaa aatattgaat attatatata atatattgat acacatgcaa ttttatattt
     2761 caaaacatcc taaaaagtaa tataaataat aaaattttt
//
LOCUS       DATCMF010000370         2775 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_444335, whole genome shotgun sequence.
ACCESSION   DATCMF010000370 DATCMF010000000
VERSION     DATCMF010000370.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2775)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2775)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2775
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_444335"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(98..988)
                     /locus_tag="VIL14_04710"
     CDS             complement(98..988)
                     /locus_tag="VIL14_04710"
                     /EC_number="3.1.21.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0016888 - endodeoxyribonuclease activity,
                     producing 5'-phosphomonoesters [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribonuclease IV"
                     /protein_id="HEY8523042.1"
                     /translation="MGFHVSITGSLSNSIKNAEEIGCTAFQIFTRNPRGWTPKPLEMK
                     DVEEFKRKLKNSPIDKKNVVVHMPYLPNFAAPNSESYDKSKKVLSEEIIRCYLLDIPY
                     LILHLGSHLGFGKKNGIKQIVNACNFALDNFNSSYRRHLRLNILIENSAGQKNSLGST
                     FDEIKEILDELNDKKFGVCFDTCHAFASGYDLRTSGKVIETMNNFNEIINIKNLKVLH
                     LNDSKGKINENRDRHQHIGLGSIGKEGMAEFLKDKYFQTIPIIMETPNDGIRGDKENM
                     KVVLDLIKDQKIELNISRKI"
     gene            1085..2095
                     /locus_tag="VIL14_04715"
     CDS             1085..2095
                     /locus_tag="VIL14_04715"
                     /inference="COORDINATES: protein motif:HMM:NF016030.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523043.1"
                     /translation="MSIILGKDDLAKYPFLEEAGTYIRESHFDLDDFNRSEFLHIIER
                     ATKRIEFALIQGKVFTDLEKYDIELFTFLVSLIIMKYINEDSAIKKFSLLEAMRVEKF
                     LISDLLKEKELRKKNLLISKIFRELFQLDVELDPQKNNLFKMNISDYLQRATQFNEVE
                     WKLINRAVDNGYVYLDGDETVRLIRYEIYKLMYNKIKNMNITKIPDQIKLHATLIKNK
                     LTPPIKYVRRITDFPPCIKKALELLNKSENLPHSARFMLATYMLSSGKSVEEVVLLFQ
                     NAPDFNEKITRYQVEHLAGKKGSQTKYSVPACSKLVNENLCYATIDCKGITNPIQFGK
                     NI"
     gene            2099..>2775
                     /locus_tag="VIL14_04720"
     CDS             2099..>2775
                     /locus_tag="VIL14_04720"
                     /inference="COORDINATES: protein motif:HMM:NF014011.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003896 - DNA primase activity [Evidence
                     IEA];
                     GO_process: GO:0006269 - DNA replication, synthesis of RNA
                     primer [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase small subunit domain-containing
                     protein"
                     /protein_id="HEY8523044.1"
                     /translation="MKKQTNSKNKDFLTTLFKEYYFKNIGILNPPIQMHNREFGFMTF
                     DGKIIRHLAFSKIGSLKAYIIQNVPSDIFCSNAYYQFPTFPINEKCWKGADLIFDIDL
                     NDILLPCQKEHTFYICPNCGFVSRDFMNLCHECHSTKILKNTIPCFRCINSLKKETKN
                     LIEFLKKDFGIQEQNLEVSFSGNTGFHIVVFQNNYLLLDSKSRSDIVGYLMGKNLLPD
                     SLGVRND"
BASE COUNT          975 a          385 c          398 g         1017 t
ORIGIN      
        1 gtaaatttcg gagcttggga aataaaaccc tctttctaat gagagtttca taattctatc
       61 gtaactgacc ataaatatta tccatgataa taaggttcta tatttttctt gatatattca
      121 actcaatttt ttggtcctta attaagtcta atacaacttt catgttttct ttatctcctc
      181 ttattccatc atttggagtt tccattataa tagggatagt ttgaaaatat ttatctttta
      241 aaaattctgc catgccttcc ttacctattg aaccaagtcc aatatgttgg tgtctatctc
      301 tattctcatt tatttttcct tttgaatcgt tcaaatgcaa aacttttaaa tttttaatat
      361 ttataatctc attaaaatta ttcattgttt ctattacttt tccagatgtt cttagatcat
      421 atccagaagc aaaggcatga caagtatcaa aacatacacc aaattttttg tcatttagtt
      481 catccaatat ctctttaatt tcatcaaagg tgctacctag gctatttttt tgaccagcac
      541 tattttcaat taaaatattt aaacgtaaat gtcgtctata tgaagaatta aaattgtcaa
      601 gtgcaaaatt gcatgcatta acgatttgtt ttattccatt ctttttccca aatcccagat
      661 ggcttcccaa gtgaagaatg agataaggaa tatctaataa gtaacatcta ataatctctt
      721 ccgagagaac ttttttggat ttatcatatg attcactgtt tggtgctgca aaatttggta
      781 aatatggcat atgaacaaca acattttttt tatcaatagg actatttttt aattttcttt
      841 taaattcttc cacatctttc atttctaaag gtttgggtgt ccacccacga ggatttctag
      901 taaagatttg aaatgcagtg caaccaatct cttctgcgtt tttgatggag ttacttagtg
      961 aacctgtaat tgatacatgg aatcccattt tcaatttttt tctatctaaa cgttttgtta
     1021 tttacaacat ggataatatc tttacgaagt agttttattt tggtaatgat taagattaat
     1081 agtattgagt atcattttag gaaaagatga cctggcaaag tatccctttt tagaagaggc
     1141 tggaacctac atacgagaaa gtcattttga tttggatgat tttaatcgat ctgaattttt
     1201 acatattata gagagagcta ctaaaaggat tgaatttgct ttgattcaag gaaaggtttt
     1261 tactgatctt gaaaaatatg atatagaatt atttactttt ctcgtttctc tcattataat
     1321 gaaatatata aatgaagatt cggctatcaa aaagttttca cttttggaag ctatgcgagt
     1381 agaaaaattt ttaatatctg atctcttaaa agaaaaagag ctaagaaaaa aaaatcttct
     1441 tatttcgaag attttcagag aactttttca gttagatgta gaattagatc ctcaaaaaaa
     1501 taatttattt aaaatgaata tttctgatta tttacaaaga gctactcaat ttaatgaagt
     1561 agaatggaaa ttaatcaata gagcggttga taatggttat gtatatttgg atggagatga
     1621 aactgtcaga ctgataagat atgaaattta caaattgatg tataataaga ttaagaatat
     1681 gaatattacc aaaataccag accaaattaa acttcatgca actttgatta aaaataaatt
     1741 gaccccaccc attaaatatg taagacgtat aacagatttt cctccttgta taaaaaaagc
     1801 cttggaatta ttaaataaaa gtgaaaactt acctcactct gcaagattta tgttagctac
     1861 ttatatgcta tcatcaggaa agagtgtaga ggaagtagta ttactatttc aaaacgctcc
     1921 tgattttaat gaaaaaatta ctagatatca agttgagcat ttagcaggta aaaaaggtag
     1981 tcagacaaaa tactctgttc ctgcctgtag caaactagta aatgaaaacc tctgttatgc
     2041 gactatcgat tgtaaaggaa tcactaatcc tatacaattt ggtaaaaata tatagaaaat
     2101 gaaaaaacaa actaatagta aaaataaaga ttttttaact acacttttca aagaatacta
     2161 ttttaaaaat attggtattc ttaatccccc tattcaaatg cataatcggg agtttggttt
     2221 tatgacattt gatggcaaga taattaggca tttagctttt tcaaaaatcg gaagtttaaa
     2281 agcttatata attcaaaatg ttccttcgga tattttttgc tcaaatgcat attatcagtt
     2341 tcctactttt cctattaatg agaaatgttg gaaaggtgca gatctgatat ttgatatcga
     2401 tcttaatgat atattattac catgtcaaaa agagcataca ttttatattt gtcctaattg
     2461 tggttttgtg tctagggatt tcatgaactt atgtcacgaa tgtcatagta ctaaaattct
     2521 caaaaataca ataccatgtt ttagatgtat aaattcttta aaaaaggaaa ctaaaaattt
     2581 aatcgaattt ttaaaaaaag attttggaat acaagaacaa aatttagagg tatccttttc
     2641 aggtaatact ggattccata ttgtagtctt tcaaaataat tatttattat tggattctaa
     2701 atcccgatct gatatagtag gatatttaat gggaaaaaat ctcttaccag acagtttagg
     2761 tgtgaggaat gacaa
//
LOCUS       DATCMF010000371         2149 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_444541, whole genome shotgun sequence.
ACCESSION   DATCMF010000371 DATCMF010000000
VERSION     DATCMF010000371.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2149)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2149)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2149
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_444541"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..185)
                     /locus_tag="VIL14_04725"
     CDS             complement(<1..185)
                     /locus_tag="VIL14_04725"
                     /inference="COORDINATES: protein motif:HMM:NF025392.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-binding protein"
                     /protein_id="HEY8523045.1"
                     /translation="MPIFLDVHKVPFKQDHLKELVDLPIDEFGVRHVNLMYNKENGVC
                     FCLLDAPDHEAVVKHHD"
     gene            295..1407
                     /locus_tag="VIL14_04730"
     CDS             295..1407
                     /locus_tag="VIL14_04730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523046.1"
                     /translation="MESVGKEFFPELKYELNGRKALDQMSEIISQTTKNLESVFDHHW
                     IHILVENSVFFNTIVDFKIKQKGVSIRFITNITSENVLHCTKIMKFVELRHADTVTGY
                     LGISDKNQFFSYTQSSSKHDNHLEKNNDNLKLKFIHITNKEFVQMQYYFFEKLWNLSI
                     PASEKIAEIQRVMFDTSLLNTNITDSRIIVEIFPKVIRSAVEEILLFFPTIDSFWFAE
                     SNGIIKLLGEAINRFIKVKVLIRIDNENSNIKKEIERKINQTNKILGTYVNYTTKKID
                     TKTIILVTDQAVSFSISIKHSGKGTFKDSIENASFSNNELNVSALLSFFDSLWIRSDI
                     EKQNIIKQTYFKIFKEPQLKDENYRRKWFFEPTKKE"
     gene            complement(1857..2063)
                     /locus_tag="VIL14_04735"
     CDS             complement(1857..2063)
                     /locus_tag="VIL14_04735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523047.1"
                     /translation="MSEEKQIEDLKSQFRKTTESELRKQMLDTISAYKNNGIDAINDL
                     ISTTIDDEVKSHGLNLIKKIKENS"
BASE COUNT          801 a          282 c          287 g          779 t
ORIGIN      
        1 ttgtcatgat gttttacaac tgcttcgtgg tctggtgcat ccaatagaca aaaacaaaca
       61 ccattctcct tgttatacat aagatttaca tgtctaactc caaattcatc tattggtaaa
      121 tctactaatt ccttaagatg atcttgttta aatggtactt tatgaacatc caaaaatatt
      181 ggcataattt caataaaaat tcatgttatt taaatgattt caacatgctt gaaaaatcaa
      241 taaaatttct ttatatctaa atttttatat cttaaaaaac aataattata gctagtggaa
      301 tcagttggta aggaattttt cccagagtta aagtatgaac tgaatggtag aaaagcatta
      361 gatcaaatgt ctgagattat atcacagact acaaaaaatc tagaatctgt atttgatcat
      421 cattggattc atattttagt agaaaactct gtgtttttta ataccatagt tgattttaag
      481 attaaacaaa aaggtgtgtc tattagattt attacgaata ttacatctga aaatgtactt
      541 cattgtacta aaataatgaa atttgtagaa ttaagacatg cagataccgt tacaggttat
      601 ttagggatct ctgacaaaaa tcagttcttc agttatactc agtctagttc caaacatgat
      661 aaccatctag agaaaaacaa tgataattta aaattaaaat ttattcatat aaccaataaa
      721 gaatttgtgc aaatgcaata ctattttttt gaaaaacttt ggaatttatc tattccagca
      781 agtgaaaaaa ttgctgaaat tcaaagagta atgtttgata ctagtttatt aaatactaat
      841 ataacagatt cacgtataat cgtggaaatc tttcccaaag ttattcggtc tgcagtagaa
      901 gagattcttt tattctttcc aacaattgat tcattttggt ttgctgaaag taatggaata
      961 ataaaattgt taggagaagc aattaataga tttataaaag ttaaagtact aattcgtata
     1021 gataatgaga attcaaatat taagaaagaa attgaacgaa aaattaatca gactaacaaa
     1081 atattaggaa catatgttaa ttacactaca aaaaagatag ataccaaaac tataatactt
     1141 gtaactgatc aagcagtttc attttcaata tctattaagc acagtggaaa aggaactttt
     1201 aaagattcaa tagaaaatgc ctcattttct aacaatgaat taaatgtttc tgccttactc
     1261 tcatttttcg atagtttatg gataagatca gatattgaaa aacaaaatat cataaagcaa
     1321 acatacttta aaatatttaa agaacctcaa ctcaaagatg aaaattatag acgcaaatgg
     1381 tttttcgaac ctacaaaaaa agaataactg ataatataat tgataatact tcaaatgctt
     1441 actgtattct accataggat agccattatg tattaaaatt catagttatg tagaaagcat
     1501 ataatagaat cgtattatac acaggaatct attatctata aatataacta actttttgaa
     1561 catattgatg aatcttactg ttgtagcact ttacaccatt tatagataaa agaaagtatt
     1621 tggatggatt atatccatat gataggattc tcaccttatc tttttgtaac aaatataatg
     1681 aattttttct tatttttctt gttcacattt aaaaaataca taatggaatg tataggctgc
     1741 agagcgatta tccagacaaa tgtaaataaa ttggttgttg ttgttgatct tatcgagaca
     1801 agtatcttat ggttatgtgg tctcatcact aatggttgtt taataaaaaa ataaggttaa
     1861 gagttctctt ttattttctt aattagattt aatccatgag attttacctc atcatcaatt
     1921 gtggtactaa tcaaatcgtt tattgcatct ataccattat ttttgtaagc agatattgta
     1981 tcaagcattt gctttcgaag ctctgattca gtagttttgc gaaattggct tttgagatcc
     2041 tcgatctgtt tttcttctga catattagtt agtcttattt ttgcaataag tcttatatct
     2101 ttaatgttat ttcaaattct aatacaatat ttttagtctc actatttta
//
LOCUS       DATCMF010000372         1771 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_444897, whole genome shotgun sequence.
ACCESSION   DATCMF010000372 DATCMF010000000
VERSION     DATCMF010000372.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1771)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1771)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1771
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_444897"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..276)
                     /locus_tag="VIL14_04740"
     CDS             complement(<1..276)
                     /locus_tag="VIL14_04740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoaD/ThiS family protein"
                     /protein_id="HEY8523048.1"
                     /translation="MAKIEFIIPSVLNKGSGEKKILLDVQDLHDAFNKASDNLGDDFK
                     RRVLDLNGKPRALINIYINGKNMRFNKDGMTTSLKDGDSIYILPAVAG"
     gene            complement(324..1529)
                     /gene="thrC"
                     /locus_tag="VIL14_04745"
     CDS             complement(324..1529)
                     /gene="thrC"
                     /locus_tag="VIL14_04745"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004795 - threonine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HEY8523049.1"
                     /translation="MICRECKKEYKPQFRYICEDCFGPLDVKYIYPTNIKRELFESRT
                     EKTYWRYFELLPIKDKNNIVSINSGFTPLQKSTNLSTDLRLKSLYIKNDSVNPTFSFK
                     DRPAGVAVSRAKEINLKAVGCASTGNLASATAAHAAVARLPCYIFAPADLEPVKISQA
                     LAYGAEFVAVDGTYDDANRVASVIGDSKGIGIVNINMRPYYVEGSKTLAYEVAEQLNW
                     QVPDYLVIPVGSGAMLNAICKGFEELCEIGLVNDVSNLKIIAAQPHGCSPIVDAFKSN
                     NSEIFPVEKPNTIAKSLAIGDPGDGIYVLKRLKQYHGIAESATNQEIMNGILKLSKTE
                     GIFTEPAGGVSVAVLQKLVESGKIDPDANIVCYVTGNGLKSTEAIVDMLPKPSTVKPD
                     VQMVSTIIR"
BASE COUNT          580 a          296 c          243 g          652 t
ORIGIN      
        1 tccagctact gcaggaagta tataaattga atcaccatct ttaagtgatg ttgtcattcc
       61 atctttgtta aagcgcatat tttttccatt tatataaata tttataagag ctctaggttt
      121 gccgttaaga tctaatactc tacgtttaaa atcatcgcct aaattatcag atgccttatt
      181 aaaggcatca tgtaaatctt gtacgtctaa taatattttt ttttctccag aacctttatt
      241 taaaacagat ggaattataa attcaatttt tgccatttat atcttcactt tttatttcac
      301 atatattatt catattattt ttattatcta attattgtag agaccatttg gacatcgggt
      361 ttaacagtag agggttttgg cagcatatct actatagctt cagtagattt gagaccatta
      421 ccagtaacat aacaaactat atttgcatct gggtctattt taccactttc aactaatttt
      481 tgaagaacag ctacagatac gccacctgct ggctctgtga aaataccttc agtctttgat
      541 aatttaagta tcccattcat tatttcttga tttgtagctg attcagcaat accgtgatat
      601 tgttttaacc tttttaaaac ataaattcca tctcctggat cacctatagc aagacttttt
      661 gcaatagtat ttggtttttc tacaggaaat atttcgctgt tatttgattt aaaggcatct
      721 actatcggtg aacatccatg aggttgtgca gcaataatct ttaaattaga aacatcatta
      781 accaatccta tttcacataa ttcctcaaag cctttacaaa ttgcatttaa cattgcacca
      841 ctaccaacag gaattactag atagtctggt acttgccaat taagttgctc tgctacttca
      901 taagcaaggg tttttgatcc ttcaacataa tatggcctca tattaatatt tactatacct
      961 attccttttg agtctccaat tacagatgct actctattgg catcgtcata agttccatct
     1021 acagcaacaa actctgcacc ataagctaat gcctgagaga tttttacagg ttctaaatct
     1081 gcaggcgcaa atatgtagca aggaagtcta gctactgcag catgcgcagc agtagcagat
     1141 gcaagatttc ctgttgaagc gcaacctact gcttttagat taatttcttt tgctctagag
     1201 acagcaacac ctgcaggtct gtctttgaaa gagaaggttg gattaacaga atcattttta
     1261 atgtataaag attttaatcg caaatctgta ctaagatttg tagatttttg taaaggagta
     1321 aaacctgaat taatgctaac tatgttattt ttatctttta ttggtaagag ttcaaaatat
     1381 ctccaatagg ttttttctgt ccgcgattca aataattctc tttttatatt agtaggatag
     1441 atatacttaa catcaagagg tccaaaacaa tcttcacaaa tgtatctaaa ttgaggttta
     1501 tattcttttt tgcattctct gcatatcaaa gactgtatta ttcccattta tactaatgca
     1561 gttaaaatac aaggtaaata aggttctcta aacaaaaatt tagtaatact ataatttgat
     1621 aatataaaaa aaatagaata ttgaaactaa ataatacaat attattctta actatggtaa
     1681 ttatataaaa atattataat tataatatat tttttaataa tttttatctt ttagaagatt
     1741 atgaaagcaa gaattatttc cggtatgaca t
//
LOCUS       DATCMF010000373         2865 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_577746, whole genome shotgun sequence.
ACCESSION   DATCMF010000373 DATCMF010000000
VERSION     DATCMF010000373.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2865)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2865)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2865
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_577746"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(38..511)
                     /gene="mntR"
                     /locus_tag="VIL14_04750"
     CDS             complement(38..511)
                     /gene="mntR"
                     /locus_tag="VIL14_04750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator MntR"
                     /protein_id="HEY8523050.1"
                     /translation="MLRNLKGDSEAGINRLESIRDAHTGKKENEDRTDRMEDYLEVIY
                     ELVQQKGYATTIDISQYLNVSSPSVTKMVKRLDETGYLKYEKYRGICLTQQGIDVAMN
                     IHQRHSLLAEFLKIIGVDEDIANKDAEGIEHHLHPQTLKKLEEFVKIVKKNHDKL"
     gene            complement(557..1891)
                     /locus_tag="VIL14_04755"
     CDS             complement(557..1891)
                     /locus_tag="VIL14_04755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ZIP family metal transporter"
                     /protein_id="HEY8523051.1"
                     /translation="MESDENRIDRNNRKTSRKKMIVIALIPLIVLSGMLVFLLGPGMS
                     ILNIGIPLPEITIEKIEFQNDKIVAFIRNTGPEGVEVAQADINDRMIPAAIEPSKTLS
                     RLAEAKVIVPFSWIAGVPYEVGITSSDGTRFSKSVEAAALAPTPNVQQASYFAIIGIY
                     VGVIPVLIGLLWFPFIKRLGMNKYKFFLSLTAGLLVFLGIDALIESNGIVAENIAGAF
                     NGQVLIVMITIITFLVLLYTSEKLVERAKMKSDANMSKSNLVTYPSSSSSSSTTKDPL
                     KQQQQQQQQQQLAKPFAIAMMIAIGIGLHNFGEGLAIGAAVLLGEVALSTFLIVGFTL
                     HNTTEGLAIVAPMAKSGGKVTIRKLITMGLIAGIPTIVGAWIGGFLYSPIAAIIFLSI
                     GAGAIFQVVYSITSWMSSNTSEPRKAMLSTPMIAGFTVGMIIMYATSLLIPS"
     gene            complement(1897..>2865)
                     /locus_tag="VIL14_04760"
     CDS             complement(1897..>2865)
                     /locus_tag="VIL14_04760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase domain-containing protein"
                     /protein_id="HEY8523052.1"
                     /translation="MKYLREFNYGKVSTTDNGTTLREFTIVAQDKNLEVSPGVFMDAW
                     TFNGTIPGPTIRATEGDLIKIKFLNNGSKPHTMHFHGIHQSQMDGVFEIIAPGGSFTY
                     EFTAEPFGLFLYHCHMQPLEEHISKGLYGVYIVDPKTPRPPADEMVMVMNGYDNDFDT
                     ENNFYTVNGIPNYYMHHPIQIEKDKLIRVYLVNILEFDQINNFHLHANLFHLYRTGTS
                     LTPNEYTDMITFSQGERAILEFSYKYPGPYMFHAHKTEFAEKGWTGLFLVKENKSESD
                     VTAFKKGENAVYPPEIGNNTFTTQTKTKDSQSAAVVSYGEASQGGS"
BASE COUNT          852 a          551 c          458 g         1004 t
ORIGIN      
        1 gaaattatta ttaataatag gagaatggat accagattta tagtttatca tgattctttt
       61 ttacaatctt tacaaattct tctaattttt tcaaagtttg cggatgcaag tgatgttcta
      121 taccttcagc atctttattt gcaatatctt catctactcc aattattttt aaaaattcag
      181 ccaacaaact atgtctctga tgaatattca tagctacatc aatcccctgc tgggtcaaac
      241 aaatccccct atatttttca tatttcagat agccagtttc atccaatcgc tttaccattt
      301 tagttacact gggagaactt acattcagat attgagaaat atctatggtt gtagcataac
      361 ctttctgctg taccaattca taaataactt caagataatc ttccattcta tctgtacggt
      421 cttcgttttc cttctttccg gtatgagcat cacgaatgga ttcaagacga ttgatacctg
      481 cctcagagtc acctttcaaa tttcttagca atttttattt accaacctta tgtatatttt
      541 agttactaac aattagttaa gatggtatca acaatgatgt tgcatacatt attatcattc
      601 ctaccgtaaa tcctgcaatc ataggtgtac ttaacatagc ctttcttggt tcactagtat
      661 ttgatgacat ccaagaagtg atggaatata ctacttgaaa tattgcacca gcacctattg
      721 acaagaatat tattgcagcg ataggggaat agagaaatcc accaatccat gctcccacta
      781 ttgttggaat gccagctatc aaacccattg ttatcagttt tcgtattgtg actttgccac
      841 cacttttggc cattggtgct actattgcca atccttcagt agtgttgtgt aatgtaaatc
      901 caactattag aaaagtactg agggctactt ctcctaatag aacagcagca cctattgcca
      961 gaccttctcc aaagttatgt aatccaattc ctattgcaat catcattgct atagcgaaag
     1021 gttttgctaa ttgttgttgc tgttgctgtt gttgttgttg ttttagagga tctttcgtcg
     1081 tagaagaaga ggaagaggaa gaaggatatg ttaccaagtt agattttgac atattggcat
     1141 cagatttcat tttggctcgc tcaacaagtt tttcagatgt atatagcaat accaagaacg
     1201 taatgattgt gatcataaca atcaacactt gaccattaaa agctcctgca atattttctg
     1261 ctacaattcc attgctttct attagtgcat ctattcccaa gaagacaagc aatcctgcag
     1321 taagactaag gaagaatttg tacttgttca tgccaagtct ttttataaat ggaaaccaga
     1381 gaagacctat cagtacgggt ataactccta catatatacc aataattgca aagtatgatg
     1441 cttgttgaac atttggagtt ggtgctaatg cagcagcctc aacactcttg ctaaaccttg
     1501 taccatcaga actagttatt ccaacctcat atggtacacc tgcaatccaa gaaaaaggta
     1561 ctataacctt tgcttctgcc agtcttgaca atgttttgct tggttctatt gcagctggaa
     1621 tcatccgatc attaatatcg gcttgcgcaa cttctactcc ttctggacca gtattacgga
     1681 taaatgctac aattttatca ttttggaatt ctatcttttc tattgtgatt tcaggcaaag
     1741 gtattcctat atttaatatc gacataccag gaccaagaag aaatacaagc attccagaca
     1801 gtactattaa tggaattaat gcgataacga tcattttttt tcgactcgtt ttcctgttat
     1861 ttctatcgat tctattctca tcagattcca tttctattaa ctgcctcctt gtgaagcttc
     1921 tccataacta acaactgctg cagattgaga atcttttgtt ttagtttgtg tagtaaaagt
     1981 attgttacct atctcaggtg ggtagacagc attttcacct tttttaaagg cagttacatc
     2041 tgactcagat ttattttctt taaccaagaa caagccggtc catcctttct ctgcaaattc
     2101 tgtcttgtga gcatggaaca tatagggacc gggatacttg taggagaatt ctagtattgc
     2161 tctttcaccc tgactaaatg ttatcatatc tgtatactca ttaggcgtca agctagttcc
     2221 agttctatag agatgaaata gatttgcatg tagatgaaaa ttatttattt gatcaaattc
     2281 tagtatatta accaaatata ctcgtatcaa tttgtccttt tcaatttgga taggatgatg
     2341 catgtaataa tttggaattc catttactgt gtaaaagtta ttttcagtat caaagtcatt
     2401 atcgtatcca ttcatcacca taaccatttc atctgctggt ggtcttggag tttttggatc
     2461 aacaatataa acaccataaa gacccttcga tatatgctct tctaaaggct gcatatgaca
     2521 gtggtaaaga aacagaccaa atggttcagc tgtaaattca taagtgaagc ttccacctgg
     2581 agcaataatt tcaaatactc catccatttg agattggtga atgccatgga aatgcatagt
     2641 atgaggtttt gatccattat ttagaaactt gattttaatt aaatcacctt ctgttgctct
     2701 aattgttgga cctggaattg ttccattaaa agtccatgca tccataaata cacctggtga
     2761 tacctcaaga ttcttatctt gagctactat agtaaattct cgtaaagttg ttccattgtc
     2821 tgttgtcgat actttaccgt aattgaactc tcttagatat ttcat
//
LOCUS       DATCMF010000374         2078 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_577782, whole genome shotgun sequence.
ACCESSION   DATCMF010000374 DATCMF010000000
VERSION     DATCMF010000374.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2078)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2078)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2078
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_577782"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..506
                     /locus_tag="VIL14_04765"
     CDS             <1..506
                     /locus_tag="VIL14_04765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523053.1"
                     /translation="NYYDLAIPSGNSMALYALLRLHFLTQDQGYIDKSEAIIKSCYKA
                     ALGNPFGFGQLLISIYLYFKKPLEIIILQNKKSDYNNREMKKWIMKQYIPNSIALTLE
                     YPSFDLEQLMSSNIFSLLKGKEIDSTNSDKFTECVYICKDFTCSLPMYSLAELKKYLN
                     NNLQIIS"
     gene            complement(542..1012)
                     /locus_tag="VIL14_04770"
     CDS             complement(542..1012)
                     /locus_tag="VIL14_04770"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEY8523054.1"
                     /translation="MVSHDRFSKILVPIDGSEPSFHAAQVASTIANRFNSEIILLYVV
                     VSPSQYEYINLTGLVTPKQIDMIIENAKKESRNWFKRIETIVKDENPNIKVSAKVILT
                     GVAVYGEILQHAEKEHIELIVIGTRGKSGIKKLLLGSTASGVVTYANCPVLVTK"
     gene            1304..>2078
                     /locus_tag="VIL14_04775"
     CDS             1304..>2078
                     /locus_tag="VIL14_04775"
                     /inference="COORDINATES: protein motif:HMM:NF024660.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PHP domain-containing protein"
                     /protein_id="HEY8523055.1"
                     /translation="MNDSPRIPFDCGVTIEDQLYLAYEKKIDALFITNHNTLNGYKQM
                     IEYRDNHEKLRRIKIYPAEEITINTKGHILAYGIYETIKPGMDINETLDAIKKQNAVS
                     CAAHPFAVSNGIREKAIKCDMIETFNSNNIDHYSNIVAEKFSSVNHMISIAGSDSHVL
                     TTFGRCINSLESENKLDSILQEMLKRKSKILKAELALKEELFEHAYYMLSASKDHLLN
                     YILVHHPSKFSLVKWTLDSFLSKPNSKLWKILGSLGLYLS"
BASE COUNT          763 a          288 c          303 g          724 t
ORIGIN      
        1 aaaattacta tgatttagca atacccagtg gaaattccat ggcactatat gcattattac
       61 gtctccattt tcttacacaa gaccaaggtt acatagataa atcagaagcg attatcaaat
      121 cttgttataa agcagcatta ggaaatcctt ttggctttgg tcaattattg atttcgattt
      181 atttgtattt taaaaaacca ttagagataa ttatattaca aaataaaaaa agtgactaca
      241 ataatagaga aatgaaaaag tggattatga aacaatatat tcctaatagt atagcattaa
      301 ctttagaata tccatctttt gacttagaac aattaatgtc ctcaaatatt ttttctcttt
      361 taaaaggcaa agaaatagat agtacaaata gtgataaatt tacggaatgt gtctacatct
      421 gcaaggattt tacatgttcc ttacctatgt attcattggc agaattaaaa aaatatctta
      481 ataataattt acaaattatt agttaattaa atatagaagt ataggataaa agattttatt
      541 actatttcgt tacaagaaca ggacaatttg cgtatgttac tacacctgaa gctgtactac
      601 caagtagtaa ttttttaatt ccagattttc ctcttgtacc tataactatt aattcaatat
      661 gttctttttc tgcatgttgt aagatttcac cataaacagc aactcctgtt aatattactt
      721 tcgcagagac tttaatgttt ggattttcat ctttcactat agtttctatt ctcttaaacc
      781 aatttctaga ctcttttttt gcattctcaa tgatcatatc aatttgtttg ggtgtaacca
      841 gcccggttaa attgatatat tcatactgag aaggtgaaac tactacataa agaaggatta
      901 tttctgagtt aaacctgttg gctatagtgc tagcaacttg ggccgcatga aatgatggtt
      961 ccgatccatc gataggtact agtatttttg aaaatctatc atgactaacc atataaacaa
     1021 tattagattg aaataaataa atcttgtatt ttttaatcat aaaatataaa agaaaaatgg
     1081 taccttagga gactaaatta actttttatc ctggaagaat ttattataat ataaaataaa
     1141 ctaaaatttt cttagtcttg aaaaagctta gttattaagc tactatttga tagagattta
     1201 tagatagtca tatataagag aaattaccca ttaaattggg tttatagata cgactcaatt
     1261 attaaatatg gaattacact gtcataacgt tttttctaat tatatgaatg attctcctag
     1321 gattcccttt gattgcggcg ttaccattga agatcagcta tatttagcat atgaaaaaaa
     1381 gatcgatgct ctctttatta ccaaccataa cacattgaat ggatataagc aaatgataga
     1441 atatagagat aatcacgaaa aattaagaag gatcaagata taccctgctg aagaaataac
     1501 aatcaatacg aaaggacata ttttagctta tggaatatat gaaactatta aaccagggat
     1561 ggatattaat gaaactttag atgcaataaa aaaacaaaat gctgtttctt gtgcggcaca
     1621 tccttttgca gtttccaatg gaattagaga aaaggcaata aaatgtgata tgattgaaac
     1681 atttaacagt aataatattg atcattattc aaatatagta gcagagaagt tttcttctgt
     1741 aaatcatatg atctctatag caggcagcga ctcacatgta ttgacaactt ttggtagatg
     1801 cataaattct cttgaatcag aaaataagtt agattctata ttacaagaaa tgttaaaaag
     1861 aaaatccaaa atattgaaag ctgagctcgc tttgaaggag gaactttttg aacatgctta
     1921 ttatatgttg tcagcttcca aggatcattt gttgaactat atattagttc atcatccatc
     1981 aaaattttct ttggtaaaat ggactttaga ctcattttta tctaaaccta atagtaaatt
     2041 atggaagatc ttgggttcct taggtttgta tttgtcaa
//
LOCUS       DATCMF010000375         1606 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_247038, whole genome shotgun sequence.
ACCESSION   DATCMF010000375 DATCMF010000000
VERSION     DATCMF010000375.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1606)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1606)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1606
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_247038"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1015..1371
                     /locus_tag="VIL14_04780"
     CDS             1015..1371
                     /locus_tag="VIL14_04780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523056.1"
                     /translation="MTLAIIPVVLVTFFVLNNITFSNRNDFDLEIDALKEEQSLFTHT
                     RVTITNTGKQPLTNIKINYGNTSETVALLEPGHSYPLSPPAGSNLQRIIATSDQGVNI
                     TKEYRTPISMPGMMGS"
     gene            complement(1402..>1606)
                     /locus_tag="VIL14_04785"
     CDS             complement(1402..>1606)
                     /locus_tag="VIL14_04785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="AIR carboxylase family protein"
                     /protein_id="HEY8523057.1"
                     /translation="VQMPPGVPVATVAINGGKNAAILACQILGIENKTIFEKIEKYKL
                     ELKEKVLTKASKLEKTGWKEYVL"
BASE COUNT          552 a          232 c          215 g          607 t
ORIGIN      
        1 ggggaagaaa agttaaaaaa attaaagtta attataatag gcagtaatag ctactttaaa
       61 taaataacct attccctctt accatgcgcg tatagtatta ctatataaca tccaattgtg
      121 gaagtatttt ctaaggatga agttgatggt tgcaattgtt attatttcca ggctattaac
      181 acaaacgtaa ctcaataagt gataattctg aatgtaggtt taatatttgg tatttatggt
      241 ttatctacag aatgaaagtt gaggcacacg taacaataac agaatgttgg tatttgtcat
      301 ttacaataat aagagtagta tacttgacct tgttagagta acaagaaaat tacgaattgt
      361 tttacatagt attacatcct atatttttct ttaataatct ttttttggat taaatctgga
      421 ctgtcttatc agtgaatctt tccatctgca gttttattta taaactaaat taatcatatt
      481 acaatattac tcaaatatga ataatcttcg ttatgattaa tagccactga cgaacctttt
      541 taattggtct tattttttca tttctggtat caatataaat ggttaaattc attactgtat
      601 tgatttcctc aaacgagaaa aattcgctat aaaagagttt ttctgttctt aaattagtca
      661 aaaattttta atattcaatt ctttctaaca ttttgagcac aaacttttta ttgtaatact
      721 tataacaaat tttagaaaat tttagaagaa ataataaaat atgctgtaaa tcctattttg
      781 tcttatttat accctaaata ataactatgg atttacaaac cgttggtttg gtttgttcct
      841 attgaaattt tgtagcttaa gttgtaatgg tcttggatag aattaaatac cgtctgaatc
      901 cgtacctaag taatcgttga aaaatgcttt actcttttcc ctttcaatgg atgcgaaaaa
      961 taatatttca ttctatgtat atagttaata taaatgacgt ttaagaaaat ttatttgact
     1021 ttagctatta tacccgttgt tttagttact ttttttgtat taaataacat caccttttca
     1081 aatagaaatg actttgattt agaaattgat gcattaaaag aagaacaatc gttatttact
     1141 catactagag ttacaataac taatactgga aaacaaccac ttacaaatat taagattaat
     1201 tatgggaaca ctagtgaaac agtagcactt ctagaacctg gacattcgta ccctcttagc
     1261 ccaccagcag gtagcaatct tcaaagaata attgctactt ctgaccaagg cgttaatatt
     1321 acaaaagaat acaggacacc aatttcaatg cctggaatga tgggttctta gaatacaata
     1381 aaattattta tagaattttt attataatac atattctttc caaccggttt tttctaattt
     1441 acttgcttta gttaaaactt tctctttaag ttctagttta tatttttcaa ttttttcaaa
     1501 tatagtctta ttttcaattc ctaatatctg gcaagccaag attgccgcgt tttttcctcc
     1561 atttattgct acagtagcaa caggaacacc aggaggcatt tgtaca
//
LOCUS       DATCMF010000376         2500 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_380065, whole genome shotgun sequence.
ACCESSION   DATCMF010000376 DATCMF010000000
VERSION     DATCMF010000376.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2500)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2500)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2500
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_380065"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            144..1085
                     /locus_tag="VIL14_04790"
     CDS             144..1085
                     /locus_tag="VIL14_04790"
                     /inference="COORDINATES: protein motif:HMM:NF013761.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline dehydrogenase family protein"
                     /protein_id="HEY8523058.1"
                     /translation="MNYFINDDHFSHTFPHSYHKEPFLLEKLLFRLSKKWIAGYTIDD
                     ALSYALTANERGLGCIINYLGEDLKNQDSIKKTVTEYKKLIKKMIESGIEGSISIKPT
                     QIGLSVNMTFCLDHLLEITSIAKKNNIFIWIDMESFKNVESTLTIYQKLREENHEIGI
                     VLQSYLKRSYSDLIKLLAYQPNIRLVKGAYHEKEEYAFKTKVEIDNNYVEMAKLLLSQ
                     KDNLRENQIFAIATHDANIIQKSLDLFYLNNFKKEHLQFQFLKGIREKLKVNLLSKGF
                     TVHEYIPYGENWLPYSLRRLRERKSNIILLLRSLIST"
     gene            complement(1100..1489)
                     /locus_tag="VIL14_04795"
     CDS             complement(1100..1489)
                     /locus_tag="VIL14_04795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523059.1"
                     /translation="MGRWDNDSGRKSPLGLNRKKIKYIMYGGFVIVAIVVLSVFIPRA
                     GLTVEIFERSDAMHSVKTISIKVNNNSLQEIKDVMVQFGENGKLHSFGNIGPFSAIAI
                     TPDPDELNFDRVIVSANAGNIKTIKFR"
     gene            1667..2134
                     /locus_tag="VIL14_04800"
     CDS             1667..2134
                     /locus_tag="VIL14_04800"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEY8523060.1"
                     /translation="MSKNVVKVNYEISALEISKTMVKRRISSVVIIDNNDKIIGIVTE
                     KDLIKEICAKNLLANTLTAAKVMSSPLITISKNSTINDATKLMVEKKIKHLAILENND
                     IIGILTTYDLINLLRDKIKSIDLDSNLLDAISMADIPLEEGGFSLPLSEDELK"
     gene            2255..>2500
                     /locus_tag="VIL14_04805"
     CDS             2255..>2500
                     /locus_tag="VIL14_04805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HEY8523061.1"
                     /translation="MDTDHHTDEEIKKFYNLRNIAVVGMSKNEEKPSHFVPRYLVKNG
                     YNIIPVNPTTEEILERKSYNQVSEIKEDVDIVDIFRKS"
BASE COUNT          987 a          357 c          334 g          822 t
ORIGIN      
        1 gaatataaaa gaatgtcccc gctaatctag caaagttgga aatcacaata ttattataat
       61 ttagtcaatt cattccaaac tttaagatac tataacattt gtacaccaaa ataactttaa
      121 tataaagaaa ttgaagatat attatgaatt attttattaa tgacgaccat ttctcccata
      181 catttcctca ttcttatcat aaggaacctt ttctattaga aaaactactt tttaggttat
      241 ctaaaaaatg gattgctgga tataccatag atgatgcatt aagttatgct ttgactgcaa
      301 atgaaagagg tttaggttgt attatcaatt atcttggtga agatttaaaa aatcaagata
      361 gtataaaaaa aactgtaaca gaatataaaa agctaataaa aaaaatgata gaaagtggta
      421 ttgaaggatc aatctctata aaacccacac aaatcgggct atcagtgaat atgactttct
      481 gtctagacca tttattagaa atcacttcaa ttgcaaaaaa aaacaatatt tttatctgga
      541 tagatatgga atctttcaag aacgttgaat ccactttgac aatttatcaa aagttaagag
      601 aagaaaatca tgaaataggt attgtactcc aatcatattt aaaaagaagt tattctgatt
      661 tgataaaatt attggcatat cagcccaata taagattagt aaagggtgct tatcatgaaa
      721 aagaggaata tgcattcaaa acgaaagttg aaatagataa caattatgtt gaaatggcga
      781 aacttttact ttcgcaaaag gataatctta gagaaaacca aatttttgca attgcaaccc
      841 atgacgctaa tataattcaa aaatctttag atctatttta tttaaataac tttaaaaaag
      901 aacatttaca atttcaattt ttaaagggaa ttcgtgaaaa actaaaagtc aatttattat
      961 caaaaggatt tactgttcat gaatatatac catatggtga aaattggctc ccttactctc
     1021 taagaagact acgagagcga aaaagtaata taattctctt actgcgttca ttaatttcaa
     1081 cttgatttac agtatcaaat tatctgaatt ttatagtctt tatatttcca gcatttgcag
     1141 atacaataac tctatcaaaa ttcaattcgt cagggtcagg agttatagct attgcactga
     1201 atggtccaat atttccaaac gaatgcagtt taccgttttc accaaattgc accataacat
     1261 ctttgatttc ttgaagacta ttattgttga ccttgatact tattgttttg actgaatgca
     1321 ttgcatcgct tctttcaaaa atctccacgg tcaatcctgc tcgagggata aaaactgata
     1381 aaacaacaat agcaacaatt acaaaaccac catacataat atattttatt tttttcctat
     1441 ttagtcctaa aggtgacttt cggccagaat cattgtccca tcttcccaca tcataatata
     1501 gaattacatt ataataaagt tcatgattga atcatagcat tcaatcttct cttttttatc
     1561 tcattactat ctattttaaa ttaaataaaa tttaattaat aaccatttga aatttatatt
     1621 gatgcatagt tcggataact ctaactcaac ctatattcat gaaatcatga gtaagaatgt
     1681 ggtaaaggta aattatgaaa tctccgcctt agaaatatca aaaaccatgg taaaacgtag
     1741 gattagttca gtagtcataa tagataataa tgataaaatt ataggtatag tgacagagaa
     1801 agacctgata aaagaaatat gtgccaaaaa ccttcttgca aatacattaa ctgcagctaa
     1861 agtaatgtcg tctcctttaa taactattag taaaaattct accataaatg atgcaacaaa
     1921 actaatggta gaaaaaaaaa taaaacattt ggcaattctt gaaaataatg atataatagg
     1981 aatactaact acatatgatc taatcaatct gttaagagat aagattaaat ctatagattt
     2041 agattctaac ctgttagatg caatttcaat ggctgatatt cctctggaag agggtggatt
     2101 ttctcttcca ttatctgaag atgaattaaa atgaataaaa acaatttgaa gattaagttt
     2161 cctttatatg tttccaaatt ttatttataa ttagtgataa cattataccg ttactttaat
     2221 aatcaataaa tactttaaga tgtattttga aataatggat acagatcatc acacagacga
     2281 agaaataaaa aaattctata atttaagaaa tattgcagta gtaggtatgt ctaaaaatga
     2341 agaaaaacct tctcattttg tacctagata tctagtaaag aatggttata atattatacc
     2401 agtaaatccg acaactgaag aaattttaga acgaaaatcc tacaatcagg tttcagaaat
     2461 taaagaagat gttgatatcg tagacatatt tcgaaaatca
//
LOCUS       DATCMF010000377         1957 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_578227, whole genome shotgun sequence.
ACCESSION   DATCMF010000377 DATCMF010000000
VERSION     DATCMF010000377.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1957)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1957)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1957
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_578227"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1347)
                     /locus_tag="VIL14_04810"
     CDS             complement(<1..1347)
                     /locus_tag="VIL14_04810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA mutase large subunit family protein"
                     /protein_id="HEY8523062.1"
                     /translation="MSKKLDIKTDSGFLVKEVYNRNDISKKNEKSEKPGKYPFTRGIH
                     DTMYRQRLWTMRQYSGFGSAEETNKRFKFLLDHGQTGLSLAFDLPTQTGRDSDNPQSE
                     GEVGRTGVAISSIEDMMACFAAIPLDKVSTSMTINSTAATLLSLYITVADTQGVSPAS
                     LRGTTQNDIMKEYIARNTYIYPPKPSLRLIGDMIQYCSKNVPQWYPISISGYHIREAG
                     SNATQELAFTFANAIEYIQTCLDRGLKIDDFAPRLSFFFCCTMEFFEEIAKFRAARRI
                     YAKIMKERFHATDDKSITLRFHVQTSGESLTAQQVDNNIVRVTTEALAAVLGGCQSLH
                     TNSRDEALALPTEDSVKIALRTQQMIATETGVTKTVDPLGGSYYVEFLTNSIEDEVDK
                     YLKKIDRMGGALSAVEKGFFQDEIRQNAYSLKKEIDEQKRIIVGVNKFQDQNDVEPL"
     gene            complement(1362..>1957)
                     /locus_tag="VIL14_04815"
     CDS             complement(1362..>1957)
                     /locus_tag="VIL14_04815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="methylmalonyl Co-A mutase-associated GTPase
                     MeaB"
                     /protein_id="HEY8523063.1"
                     /translation="SLRNIVRILDAAGYDLIIVESVGAGQLEIEVSKVVNLTIVVFTP
                     NTGDKVQAVKAGITEIGDVYVVNKTDLEGAKTLYNTIRDLIGETERKPIILKCSAKNG
                     TGIREVAETIRNMLNEQVDKFKAKDQELLEIELKDMVLNILKDKIIRMLNDNPTYHNF
                     IDKIQNKKMDPFQAAEELTTNLLKNTISDYIEKNKNY"
BASE COUNT          554 a          379 c          286 g          738 t
ORIGIN      
        1 taaaggttct acatcatttt gatcctgaaa tttgttcact ccaactataa tccttttttg
       61 ttcgtctatt tcttttttta atgagtatgc attctgcctt atttcatcct gaaaaaatcc
      121 tttttcaact gcagaaagtg ctccacccat tctatctatc tttttaaggt acttatctac
      181 ttcatcctct atgctattag ttaaaaattc tacatagtaa gatccaccta atggatctac
      241 agtttttgtt actcctgttt ctgtagctat catttgttgt gtcctcaaag caatttttac
      301 agaatcttca gttggcaatg ctaaggcctc atctctagaa tttgtatgta gggattggca
      361 acctcctaaa actgcggcaa gggcttctgt tgtaactctt acaatattat tgtcaacttg
      421 ttgagcagtt aatgactctc cgctagtttg aacgtgaaaa cgtaaagtta ttgatttatc
      481 atctgtagca tgaaatcttt ctttcattat ttttgcatag attcttctgg ccgctctaaa
      541 tttagcaatc tcttcgaaaa attccatagt acaacaaaag aaaaatgaaa gacgaggggc
      601 gaaatcgtca attttaagtc ctctgtcaag acaagtctgt atatattcaa ttgcatttgc
      661 aaatgtaaat gctagttcct gagtagcatt tgaccccgct tctcttatat gatacccaga
      721 aatacttatt ggataccact gagggacatt tttggaacag tactggatca tatcacctat
      781 aagtcgaaga gagggttttg gtggatatat ataagtattt ctagcaatat attctttcat
      841 aatatcattt tgagtagttc ctcttaaaga agcaggactt actccttgtg tatctgctac
      901 agttatatat aatgacaata gcgtggcagc agtcgaattg attgtcatag atgtactaac
      961 tttatctagg ggaatagcag caaaacaagc catcatgtct tcaatcgaac taattgcaac
     1021 tcctgttctt ccaacttcac cttcagattg tggattgtca gagtcccttc cagtctgagt
     1081 tggtaaatca aaagcaagag ataacccagt ctgaccatga tctaaaagaa acttgaatct
     1141 tttattggtt tcctctgcac ttccaaaccc actatattgc ctcatagtcc aaaggcgttg
     1201 gcggtacatt gtatcatgaa ttcctctggt aaatggatat ttgcctggct tctcactttt
     1261 ttcatttttc tttgaaatat cgtttctatt gtaaacttct ttgactagaa atcctgaatc
     1321 agtcttaata tctaattttt tagacatttg attttcctct cctaataatt tttgttcttt
     1381 tctatataat cactaattgt attctttaaa agattagtag tcagctcttc tgctgcttga
     1441 aagggatcca ttttcttatt ttggattttg tcaataaaat tatgataagt aggattatca
     1501 tttaacattc ttatgatttt atctttaagg atatttaaaa ccatatcttt taattctatt
     1561 tctaataatt cttgatcctt tgccttaaac ttgtctacct gctcattgag catattacga
     1621 attgtttctg caacctctct tatacccgta ccattttttg cagaacattt tagtataatt
     1681 ggctttcttt ctgtttcccc aattaagtcc cttattgtat tataaagagt ttttgcacct
     1741 tcaagatcgg ttttatttac aacatataca tccccgatct ctgtaatccc tgcttttact
     1801 gcttggactt tatctcctgt attgggagta aaaactacaa tggtaaggtt tacaacttta
     1861 gatacttcta tttctaattg accagcacct acgctctcga ctattatcaa atcataacca
     1921 gcagcatcaa gaattctaac aatatttctt aatgatc
//
LOCUS       DATCMF010000378         1867 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_247339, whole genome shotgun sequence.
ACCESSION   DATCMF010000378 DATCMF010000000
VERSION     DATCMF010000378.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1867)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1867)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1867
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_247339"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1038)
                     /locus_tag="VIL14_04820"
     CDS             complement(<1..1038)
                     /locus_tag="VIL14_04820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose 1,6-bisphosphatase"
                     /protein_id="HEY8523064.1"
                     /translation="MRITVSAIKADIGAIGGHTRPSDELLDVVKNYIGKMGNELIVDH
                     YIGYSGDDIHIIMTHKFGIDNEKIHKLAWDAFSEGTKTAKNQGLYGAGQDLLKDSFSG
                     NVRGMGPGVAEIEMEERQSEVFCIFAADKTEPGAFNFPFWRMFVDAGSNTGLLINEKL
                     ASGVTFKVMDVMTGNVADLKMWEDKPELEAALMFPGRYVVHSVYSSAGDQILSASTDR
                     LHNIAGTYVGKDDPIAIVRTQKDFPATEEVGSAFNNPHYVSGNTRGSHHLPLMPVKLN
                     SPASLNYSIPIVECLVFSMHEGRLTGPLDGFGTADWDLQRTWASERAMIMRNQGFIHP
                     ATLVPDELEYNK"
     gene            1168..>1867
                     /locus_tag="VIL14_04825"
     CDS             1168..>1867
                     /locus_tag="VIL14_04825"
                     /EC_number="5.6.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF013878.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003916 - DNA topoisomerase activity
                     [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase"
                     /protein_id="HEY8523065.1"
                     /translation="MKDIKIHNLNVISKDKKKYSLVICEKPNVANRIAIALGTSEIKK
                     TKIKGNTVFDVLTKDNTRYVILSSKGHLYGLKDTNKRGKIFPIFDIYWAPISNPHNKN
                     SKNLIELISLFAKDTDNFIHACDYDQEGELIGYNILELICEKAYGNSHRAKLSTLTSD
                     DINKSFITLEKSNRNMAYAGMFRHLLDYIYGINFSMAISHAIKIKNRYSYLTVGRVQT
                     PTLKFIVDRDLQINY"
BASE COUNT          624 a          329 c          263 g          651 t
ORIGIN      
        1 tttattatat tctaattcat caggtactaa agttgcagga tgaataaatc cttgatttct
       61 cataatcatt gctctttcag atgcccatgt cctttgtaag tcccaatcgg ctgttccaaa
      121 tccatcaagg gggcccgtta gtctgccttc gtgcatacta aatactaagc attctacaat
      181 tggtattgaa taatttaggc tagctggtga attcagtttt actggcatca aaggcaaatg
      241 atgactacct cttgtattac ctgatacata atgcggatta ttaaaagcac taccgacttc
      301 ttctgttgct ggaaaatcct tttgtgttct aactattgct atgggatcat ccttaccaac
      361 ataggttcca gctatgttat gtaatctatc agttgatgca gaaagaattt gatctcctgc
      421 tgatgaatat actgaatgaa caacgtatct gccaggaaac atcaaagctg cttctaactc
      481 tggtttatcc tcccacattt ttaaatctgc aacattaccc gtcatgacat ccataacctt
      541 aaaggttact ccacttgcca atttttcatt tattaacagc cctgtattac ttccagcatc
      601 tacaaacatt ctccaaaatg gaaaattaaa tgcaccaggc tctgttttat cagcagcaaa
      661 aatacagaat acttcacttt gtctttcttc catttctatt tctgcaacac caggacccat
      721 tcctctaaca tttccagaaa aagaatcttt taacaaatct tgtccagctc catacaagcc
      781 ttggttttta gctgttttag ttccttcact aaatgcatcc caggctaatt tatgaatttt
      841 ttcattatct attccgaatt tatgtgtcat gataatgtga atatcatctc cgctatagcc
      901 aatataatgg tctacgatga gttcgtttcc cattttccca atatagtttt taacaacatc
      961 aagtaattca tcactaggtc tggtatgccc accaattgca cctatatctg cttttattgc
     1021 tgaaactgtt atacgcataa tttgattgga ttaaatattg tttatatctt ttctgctatg
     1081 tattttattt taatcatcta aaagaaatct tatttattgc atttggaact atgttttcga
     1141 ttataaaagt taaatataag aaaatggatg aaagatatca aaatccataa tttgaatgtc
     1201 atttcaaaag ataaaaaaaa atattccctt gtaatatgtg aaaaaccaaa tgttgctaat
     1261 cgaattgcta ttgctttagg aacatctgaa attaaaaaaa caaaaataaa aggtaataca
     1321 gtttttgatg tacttactaa agataacaca cgttatgtaa ttctatcgtc taaaggacat
     1381 ctgtatggtc taaaagatac taataagaga ggtaaaatct ttcctatttt tgatatatat
     1441 tgggcaccga tatccaatcc ccacaataaa aattcaaaaa acctcataga gttaataagt
     1501 ctatttgcta aggatactga taattttatc catgcatgcg attatgatca agaaggtgaa
     1561 ttaattggat ataatatatt agaattgata tgcgaaaaag cttatggtaa ttctcataga
     1621 gcaaaattgt caactttgac ttctgatgat ataaataaat cttttattac attagaaaaa
     1681 tctaatagaa atatggctta tgctggtatg tttagacact tattagatta tatatatgga
     1741 ataaattttt ctatggctat ttcacatgct ataaaaataa agaatagata ttcttatcta
     1801 actgtgggaa gagttcaaac tcccactctg aaatttatag tagatagaga tctgcaaata
     1861 aattact
//
LOCUS       DATCMF010000379         1577 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_247688, whole genome shotgun sequence.
ACCESSION   DATCMF010000379 DATCMF010000000
VERSION     DATCMF010000379.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1577)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1577)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1577
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_247688"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            309..>1577
                     /locus_tag="VIL14_04830"
     CDS             309..>1577
                     /locus_tag="VIL14_04830"
                     /inference="COORDINATES: protein motif:HMM:NF024117.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HEY8523066.1"
                     /translation="MNNLTVRELYKTMSKTKTHLVQSNEIATICVCPYLFKMSYPFGV
                     SGGERDYLAANAAHDIMSLALPTTVLDNWQQGVKKHEWENIARRIEKASESIIQKVIE
                     NTKQKLKIEEKASISQGIDTNGFEYDVIYRFYGLLVGIVKRIMKNYEQPRRAITEVTI
                     SNVNTHHEGRLDAVLEFGNGQYAVIDWKTNNMNQANSSGKDRWQLISNILLANFRYTG
                     NEDTWSKFRFGAVVYYQNAYLPDLPIQQNWIDKLKDDRKFAYEILCGGRPNAQKPSFC
                     PICDKGGESSSDCQFYRKDSRLAYEGKLPTEYASIRRQLIKRRYLVLDERAETHKHKF
                     VIQTMINNLGEKLALEELEKYSIIHSDYKLHSIDKNSITLLRNKNNATNENIVTFLEP
                     RKVVRIIGKEASIPLLGCVSEKGFIRDVEGS"
BASE COUNT          555 a          248 c          327 g          447 t
ORIGIN      
        1 agctgatatt acttatatac ctgcttcatc tacctcgatt atcgttgtta aacactggaa
       61 ccttatatca caaagggaga aatgataatg caggaaatcg ctttttgaaa aagaaattag
      121 aagttcatag tcaccagcca atcaagcttt ttagccacaa agcaattgta tgtcaaagtc
      181 gaactatggg agaagaacat atgcatgcgg ttcactttac gataatcaat gaggtaataa
      241 gaaaacatca tgagttagcc atattttctg gctttttgtt ctgaagatga ggaggacgta
      301 atcacgaaat gaataatctc actgttcgag aactatacaa aacgatgtca aagacaaaga
      361 cgcatctagt acagtccaat gagatagcta ccatatgcgt atgcccttat ttattcaaaa
      421 tgagttatcc tttcggagtc agtggaggag aacgtgacta tcttgctgcc aacgcagctc
      481 atgatataat gagcttagct ttacctacaa ctgttttaga caattggcaa caaggggtaa
      541 aaaaacatga atgggaaaat attgctagga gaatagaaaa agcttccgaa agtatcatac
      601 aaaaggtaat agagaataca aaacagaagt taaagattga ggagaaggca tctatctccc
      661 aaggaatcga taccaatggt tttgaatatg atgtaattta tcgattctat ggtcttttag
      721 ttggtattgt aaagcgtata atgaaaaatt atgagcagcc taggcgggct ataactgagg
      781 ttactatttc caatgtaaat acacaccatg aagggagatt agatgctgtt ttggaatttg
      841 gtaatggtca gtacgcagtt attgattgga aaacaaataa catgaatcag gcaaacagca
      901 gtggtaagga taggtggcag cttatatcaa atattctttt agcaaatttc cgttatactg
      961 gcaatgagga tacgtggagt aaattcaggt tcggtgcagt agtatattat cagaatgcgt
     1021 atctacctga tttacccata caacaaaact ggattgataa actcaaagac gacaggaagt
     1081 ttgcatatga gatattatgc ggtgggagac ctaatgcaca aaagccttcc ttctgtccta
     1141 tatgtgacaa aggaggcgag tcttcatctg actgtcaatt ttaccgcaaa gattctagac
     1201 ttgcttatga gggtaagcta cctactgaat acgcaagtat aagacgacag ttaataaaaa
     1261 ggcgttatct ggttttggat gagcgtgcag aaactcacaa acataaattt gtaattcaaa
     1321 ccatgattaa caatctagga gaaaaattgg ctcttgaaga actggagaaa tatagcatta
     1381 tccatagtga ttacaaatta cattctattg ataagaattc aattaccttg ctcagaaata
     1441 aaaataatgc cactaacgaa aatattgtga cgttcttaga acctcgtaag gttgtcagaa
     1501 taataggaaa agaggcttct attccacttt taggttgtgt tagtgagaag ggatttatta
     1561 gagatgtaga gggttcg
//
LOCUS       DATCMF010000380         2401 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_247745, whole genome shotgun sequence.
ACCESSION   DATCMF010000380 DATCMF010000000
VERSION     DATCMF010000380.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2401)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2401)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2401
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_247745"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..202
                     /locus_tag="VIL14_04835"
     CDS             <1..202
                     /locus_tag="VIL14_04835"
                     /inference="COORDINATES: protein motif:HMM:NF014788.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AIR synthase-related protein"
                     /protein_id="HEY8523067.1"
                     /translation="KIDLTEMYRTFNMGIGLCMILSKTNVDKTISIIEKYNMKVHKIG
                     EVDSKGNGNVIGKVENKKYIFS"
     gene            complement(360..1970)
                     /gene="lysS"
                     /locus_tag="VIL14_04840"
     CDS             complement(360..1970)
                     /gene="lysS"
                     /locus_tag="VIL14_04840"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0017101 - aminoacyl-tRNA synthetase
                     multienzyme complex [Evidence IEA];
                     GO_function: GO:0004824 - lysine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006430 - lysyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HEY8523068.1"
                     /translation="MIENLIGKGTWIDKVANTLLLREKKLNRNIDSIKVESGLGASGI
                     PHIGSMGDAVRAYGISLALQNLGYNSELIAYSDDMDGLRKIPAGFPPWLKDHIAKPVS
                     HIQDPFGDCHNSYGSHMSSLLLDGLDRVNVKYIFKSATEVYKSGILIDAIDQILTKSE
                     YLGQKISEFVGQNKFLTVLPYFPICKNCGKLYVAHAYKYLTKNKKVLYECSGIKIGNK
                     EITGCGYKGEANIGNAEGKLAWKVEFAARWKIFDVRFEAYGKDIMESVKINDWVCEEI
                     LNFPHPLHIKYEMFLDKRGKKISKSAGNVLTPQKWMKYGTPQSLLLLLFKRITGTRHV
                     GIEDIPSLMDEYDLYEDLYFGKLKETNESKMIKLRGIYEYVNHLNPPKNNSNHIPYRL
                     LVQQTSLFEGKDQIDKVYERLQKYKLISEKSKDIIEKIQLAFNWSNDILANEDSHYIS
                     LDREQKKALTELVTTLRSFVNKEDNNMANNIQTLIYETSKKHGIEPKNFFRLLYQILI
                     NSERGPKLGNYLVDLGIDRTSEIIEKYL"
BASE COUNT          795 a          382 c          310 g          914 t
ORIGIN      
        1 taaaatagat ctgacagaaa tgtataggac ttttaatatg ggaatcggtt tatgtatgat
       61 actttcaaag accaatgttg ataagacaat tagcataata gaaaaataca atatgaaagt
      121 ccacaaaatt ggagaggtgg attcaaaagg taatggaaac gtaattggaa aagttgaaaa
      181 caagaaatat attttttcat aacttcacag ggtaattatt aatatgtata attgttttta
      241 ccttaaaatt gataaccact attagctatt tattttgttt aaatacataa aatctttatt
      301 atatggtcaa cattattctt cttattgtga aataagaaaa gattttaaac attaatatct
      361 taaagatact tttcaattat ctcactggtt cgatcaattc ctagatcaac caagtaattg
      421 ccaagttttg gtcctctttc agaattaatg agaatctggt aaagtagacg aaagaaattt
      481 tttggttcta tcccatgttt ttttgaagtt tcataaatta atgtttgaat attatttgcc
      541 atgttattat cttctttatt tacaaatgac cttagagtgg tgactaattc tgttaatgct
      601 ttcttttgtt ctctatccaa tgatatataa tgactatctt catttgctaa aatatcattt
      661 gaccaattaa aggcaagttg aattttctct attatatctt ttgatttttc actaattagt
      721 ttgtattttt gaagtctttc atatacctta tctatctgat cttttccttc aaaaagggac
      781 gtttgttgga caagtaatct atagggaata tgattagaat tatttttcgg tggattaagg
      841 tgattaacat actcataaat tcctcgtaat tttatcattt ttgattcatt cgtttctttt
      901 aatttcccaa aatacaaatc ttcgtaaaga tcatattcat ccattaatga gggtatgtct
      961 tctattccta catgccttgt tccagttatt cttttgaaca ataataaaag aagggattga
     1021 ggtgtaccat atttcatcca cttttggggc gttaaaacat taccagcaga tttacttatt
     1081 tttttgcctc gtttgtctaa aaacatttca tattttatat gcaaaggatg aggaaagttt
     1141 aatatctctt cacaaaccca atcatttatt ttgacagatt ccataatatc tttaccatat
     1201 gcttcaaatc gaacgtcgaa tatcttccat cgtgcagcaa attcaacctt ccaagcaagt
     1261 tttccttcag catttccaat gttagcttct cccttataac cacatcctgt gatttcttta
     1321 tttcctatct tgatcccaga acattcatat aatacttttt tatttttagt caaatattta
     1381 tatgcatgag ctacataaag ttttccacag tttttacaaa taggaaaata aggtaataca
     1441 gttaggaact tattttggcc tacaaattct gaaatttttt gtcccaggta ttcgcttttt
     1501 gtaagaattt gatcaattgc atcaatcagt ataccacttt tatagacctc cgtagcactc
     1561 ttgaatatgt atttaacgtt tacacgatcc aatccatcaa gaagtaaact actcatgtga
     1621 gacccatagg aattatgaca gtctccgaat gggtcttgaa tatgagaaac cggtttggca
     1681 atatgatctt tgagccatgg aggaaatcca gccgggatct ttcttaatcc atccatatca
     1741 tcagaataag caattaattc agaattatat cctaaattct gtaaagccaa actaatacca
     1801 taagcccgta ctgcatctcc catactacct atatgaggta ttccagaagc tcctaatcca
     1861 ctttctactt ttattgaatc gatattccga tttaattttt tttctctcaa gaggagtgta
     1921 tttgctactt tatctatcca ggttcctttt ccaataagat tttctatcat gttactatac
     1981 catattacta tttaacaaag ttaatttgtt atattactaa ataaaacatc tacttttaat
     2041 cctattgtat agataggtca aaatctagca atataatatc aataaaacag aaatagtctt
     2101 aaatatgaaa aataatgtaa tatagatgga ctgaatcatt tttattctct tatattagta
     2161 ttataattcc tagatttttc acaaggatct tatgagctga atgtataaca tagtcatcat
     2221 gctaatcaag acatctagaa tgtagaagat atctccaaca atatttagca aattgagaat
     2281 gttatatttt accaagtaat agcattcttt ttttaatttc tctattttag atacctatta
     2341 tattctcata ataataagta aaatatctta gctttcaatc tgaatttttt agataattac
     2401 t
//
LOCUS       DATCMF010000381         1691 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_578650, whole genome shotgun sequence.
ACCESSION   DATCMF010000381 DATCMF010000000
VERSION     DATCMF010000381.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1691)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1691)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1691
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_578650"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            100..1545
                     /gene="gatB"
                     /locus_tag="VIL14_04845"
     CDS             100..1545
                     /gene="gatB"
                     /locus_tag="VIL14_04845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HEY8523069.1"
                     /translation="MTSSSSSLPVKIGLEIHCQLTQLNTKLFCSCYCNYREKEINSNI
                     CPICIGLPGSLPILNKKAVEFAIMISKALDCKIPELTIFSRKNYFYPDLPKNFQITQY
                     DSYGTSTSIGKEGSVKYGENDKIARIRRIQLEEDPGRLVYENGRMQALIDYNRAGVAL
                     VEIVTEPDFTNPKDVRTFLNKMTSILEHLNVCNTNLEGSLRCDANISIGNGKKVEIKN
                     VGSFSDIEKALTYEITRQKTMTVHDIEIKAETRHWDDKRKITKQARSKEEEEDYRYFP
                     EPDIPKILLENISLIKTPELPDERKFRFINDYGLSEHVSQVLIDNKDLADLFESAIKI
                     YHSPKSISNWIVSDILAFMEYDSSGKKTITDEMKIDAKHIAEIAKLVDENTINRSTAK
                     SIISRIIKTGELPSDIIKKEKQMTTIINDETILLESIDRIFKEEKKATLDAKQNPTAI
                     NFLLGKIMRLTKGRADPKITTILLKKRLDEV"
BASE COUNT          704 a          233 c          263 g          491 t
ORIGIN      
        1 aatcatggct gatgaatttc aagagaaaaa attactggat atatcggaag tactggaaaa
       61 atcaattaat attaatatat cgtatccaga tctataacaa tgacatcatc atcatcatca
      121 ttaccggtta aaattggtct tgaaatacat tgtcagctaa ctcaacttaa tactaaatta
      181 ttttgttcat gttattgtaa ttatagagaa aaagaaatca attctaatat atgcccaatt
      241 tgtatcggat tgcctggatc cttgccaatt ttgaataaaa aagctgtaga atttgcaatt
      301 atgatttcaa aagctttgga ttgtaaaatt ccagaattaa ccattttttc aagaaaaaat
      361 tatttttatc cagatttgcc aaaaaatttc cagattacac aatatgattc ttatggtacc
      421 agtacaagca taggaaaaga aggatctgta aaatatggcg aaaatgacaa aattgccaga
      481 ataagaagga ttcagctgga agaagatcca ggacgattgg tttatgaaaa tggaagaatg
      541 caagccttaa ttgactataa cagagcaggt gttgcattag tagaaatcgt aactgaacct
      601 gattttacta atcccaaaga tgtaagaaca tttttaaata aaatgacctc aatactagaa
      661 catttgaatg tgtgtaatac caatttagaa ggttctctaa gatgtgatgc aaatatttct
      721 ataggtaatg gaaaaaaagt agaaatcaaa aatgtaggtt cttttagtga catagaaaag
      781 gcattgacat atgagataac acgacaaaaa acaatgaccg ttcatgatat agaaattaaa
      841 gctgaaacaa gacattggga tgataaaaga aaaattacaa agcaagcaag atcaaaagaa
      901 gaagaagaag actatagata tttccctgaa ccagatattc caaaaatttt gttagaaaac
      961 atatccttaa ttaaaacacc tgagcttcca gatgaaagaa aattcagatt tataaatgat
     1021 tatggacttt ctgaacatgt atcacaagta ctcattgaca ataaagattt agctgaccta
     1081 tttgaatcag caataaaaat atatcattct ccaaaatcta tatccaattg gatagtaagt
     1141 gatattcttg catttatgga atatgattca tcaggtaaaa aaacaataac tgatgagatg
     1201 aaaatagatg ctaaacacat tgcagagatt gcaaagctag ttgatgagaa tacaataaat
     1261 aggtctacag caaaatccat aatctcccga attattaaaa caggagaatt accatctgat
     1321 atcataaaaa aagaaaaaca gatgaccaca ataatcaatg atgagacaat tttactagaa
     1381 tcaatagata ggatattcaa agaagaaaaa aaggcaacgt tagatgctaa acaaaatcct
     1441 accgcaataa acttcttgct tggtaagata atgagactga caaaaggaag ggctgatcca
     1501 aaaataacta caatactttt aaagaaaagg ttggatgaag tctaatctaa aaattttatt
     1561 ttcattatat tagtgactat tctaacagat acatatatta tgcctttaca tgtcctagta
     1621 atagtcatac ttacaaacat gtggaaatat agctatataa atggaattaa tttatcagca
     1681 tttcatttat t
//
LOCUS       DATCMF010000382         5060 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_578708, whole genome shotgun sequence.
ACCESSION   DATCMF010000382 DATCMF010000000
VERSION     DATCMF010000382.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5060)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5060)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5060
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_578708"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(220..579)
                     /locus_tag="VIL14_04850"
     CDS             complement(220..579)
                     /locus_tag="VIL14_04850"
                     /inference="COORDINATES: protein motif:HMM:NF012753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-II family nitrogen regulator"
                     /protein_id="HEY8523070.1"
                     /translation="MSEKNGNGKKTNSQLIRIEAFIREEKEDDVLAALNKLGVPATFY
                     ESKGIGKGEKYQIRYGRRGDISTMPYSNRRTVETIVPEDKVDEVVSAIKEAAKIEKTG
                     GAGGILAISKVNEIINI"
     gene            810..1196
                     /locus_tag="VIL14_04855"
     CDS             810..1196
                     /locus_tag="VIL14_04855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523071.1"
                     /translation="MNFFYDEISKSLSSEIPQSKNSYLKAMLDLEKFEIGQSYVTSKI
                     KNKKNDTLVVNIQGGSPGIDISDSLFNFTEIPKIAYVRTMIDNTILVRKLPVLGVKEW
                     LLIYEDTLFLLAVKEKYDELEILCVF"
     gene            1299..3431
                     /locus_tag="VIL14_04860"
     CDS             1299..3431
                     /locus_tag="VIL14_04860"
                     /inference="COORDINATES: protein motif:HMM:NF013647.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0033179 - proton-transporting V-type
                     ATPase, V0 domain [Evidence IEA];
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_function: GO:0046961 - proton-transporting ATPase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="V-type ATPase 116kDa subunit family protein"
                     /protein_id="HEY8523072.1"
                     /translation="MGLAQLAKVTLILPRMESSKVASRLAQFEWFHPISSNSEYSDPN
                     LDELHLRSQKLFQSIDEVVRELGIKTEIGIMDALTKGKPKNKKELQISEIEHLILKLE
                     EDSKTLVNETSKIINERDSLNRQLDEYKTLKDTLSVVSTLKIDISKLNNSKLLYQNMF
                     IIKTKDFSEIQRSLSDVSLFTLKLNDTYSALFIFAQNEDSDRIGKTIRSFDISQIAIP
                     NTFSQNPSEAFRHLTTKIKELTAKKKEIDSKILKISKDNNSKILYLRESSQVVREVLE
                     TLRKPAGLKNFAIIQGYIPTVMTDNFKKLHQRWITIFEHKKHNDFHQIEKDHDSEQSK
                     ENQEPSLFANSRYFRSFEPITLTQGPPKSNEIDPTPMIALIFPIFYGLMFGDAGQGAL
                     LALLGATFRIRGTGNLKKWGTLILASGIAAIIAGLIVGEAFGFHIFEVPGGEYLRSLG
                     FIGILNAADFSEETVLTILTFSINIGITHLVSAFAFSIYKGIKQGKKYEVLTNRLPTL
                     IMYLAIISLMLAAVGANYKVLEMYTNQNPAPFFSNIAGDWVTVEIVTKIAFLILMITM
                     VLQILAVPLGVKLGKVKVHGNVNEELFMTVIEVMLIRLVELFANTISYTRIGIMLLVH
                     VALMGTANNGVEFFFSTGNFPVGIVVAILGNLGVMMIEGLLVYIQALRLHLYEWFTKF
                     YDGSGVPFKKLVPEMLYTSLLWEKKLQK"
     gene            3635..3937
                     /locus_tag="VIL14_04865"
     CDS             3635..3937
                     /locus_tag="VIL14_04865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523073.1"
                     /translation="MSDFNNKNFILNQALWLGISLAISIAISLVVPFPYSLPIIIGVF
                     LLLSFYIRQRQFKKLGLSSATMFGNSSVNYYCMNCGAKHNQLSCPRCGSKMKRVGA"
     gene            complement(3974..4645)
                     /gene="tpiA"
                     /locus_tag="VIL14_04870"
     CDS             complement(3974..4645)
                     /gene="tpiA"
                     /locus_tag="VIL14_04870"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004807 - triose-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HEY8523074.1"
                     /translation="MKGLIIINCKNYLEVAGEKILQLSEIAKDISNSNKVQIMLAPPQ
                     NCLFYLSQSIKLPLICQHIDDEKIGATTGFIIPELAKSYGAAGSLINHSEHRIEHTHI
                     QKLVERLRQLNMTSIVCAATSKEVGELARLQPNMIAIEPPELIGTGKAVSKVNPSIIT
                     NSVKEAGRHSENIKVICGAGIVDKTDVQSAINLGSKGILLASGLIKSEGWQDKLIELC
                     EGFEQ"
     gene            complement(4681..>5060)
                     /locus_tag="VIL14_04875"
     CDS             complement(4681..>5060)
                     /locus_tag="VIL14_04875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="fructose 1,6-bisphosphatase"
                     /protein_id="HEY8523075.1"
                     /translation="AFNNPHYVSGNTRGSHHLPLMPVKLNSPASLNYSIPIVECLVFS
                     MHEGRLTGPLDGFGTADWDLQRTWASERAMIMRNQGFIHPATLVPDELEYNKGYEARM
                     DKLNQKFTSSISNKETEKFSKRD"
BASE COUNT         1699 a          774 c          775 g         1812 t
ORIGIN      
        1 caaagtactt aaataaaatt tttagttatt tactagtaaa acagatagaa gaaatgagaa
       61 gttcgtattt gtattattac tattactact gttattctta tgatatcaat ttattagtta
      121 tctaaagtaa aaatttgtta ctagctgcac tcaggggttc tttaaataca atcaaattat
      181 accataacaa aataaaaatt attatgaaat gttacaatat tagatattta taatttcatt
      241 tacttttgaa attgctaata ttcctccagc tccacctgtt ttctcaattt ttgcagcttc
      301 ttttattgca gacactactt cgtctacttt atcctctgga actattgttt ctactgttct
      361 tctattggaa tagggcattg tagagatatc tccacgtcta ccgtatctga tttgatattt
      421 ttctcctttt cctataccct ttgattcata aaatgttgca ggtactccaa gtttatttaa
      481 tgcagctaaa acgtcatctt ctttttcttc tcttataaaa gcctcaattc gtatcaattg
      541 agaattagtt ttttttccat ttccattttt ctccgacaat ctagtatcaa atatattgaa
      601 aggacctttt ttttaaagtt atgttttata aaacaaataa atttttagtt tgataattat
      661 aaaaaagaaa atttgtaata attataactt ttaatataaa aagtaaaaaa attagctcaa
      721 gaatttaatt ttttatattt catccaaata aaaattgctg tgaacttgct taaaattaaa
      781 ataatataat atctgaatat acttaactga tgaacttttt ttatgatgaa atttctaaat
      841 ccctctcctc tgaaatccct caaagtaaaa attcttacct aaaagcaatg ctggatttag
      901 aaaaatttga aataggacaa agttacgtta cttctaagat aaaaaataaa aaaaatgata
      961 cattagtagt aaatattcag ggtggtagtc caggaataga tatatctgat tcacttttta
     1021 attttactga gattcctaag attgcatatg tacgtacaat gattgataat acgattctag
     1081 taagaaaact accagtactt ggagttaaag aatggttact gatttatgaa gatactcttt
     1141 ttttgttagc tgtaaaggaa aagtatgatg aattagaaat tctttgtgtg ttttaatttc
     1201 ctaatagata tttttttatt ctaaaataat ttattaccat ctatatttta aatttcatag
     1261 ataagatttt aagtcataac gttatccaaa ttcttgaaat gggcttagcg cagcttgcta
     1321 aggttacttt aattcttcct aggatggaat cgtcaaaagt tgctagtcgg ctcgcacagt
     1381 ttgaatggtt tcatccaatc agttctaatt ctgaatattc cgatcctaac ctagatgaac
     1441 tacatttacg ttcacaaaaa ctctttcaaa gcatcgatga agttgtacgt gaattaggga
     1501 ttaaaacaga aattggaata atggatgctc ttacaaaggg taaaccaaag aataaaaaag
     1561 aattacaaat ctcagaaatt gaacatttaa tattgaaatt ggaggaggat tcaaagactt
     1621 tggtaaatga aacctcaaaa atcattaatg aaagagattc tttaaataga caacttgatg
     1681 aatataaaac attaaaagat actctaagtg tagtatccac tttaaagatc gatatatcca
     1741 aacttaacaa tagtaaatta ttatatcaaa atatgtttat tattaaaact aaagatttct
     1801 ctgagattca acgttctctt tcagatgtct ctctttttac attgaaatta aatgatactt
     1861 attctgcatt attcatcttt gctcagaatg aagattctga tagaatagga aaaacaatac
     1921 gtagttttga catatcacaa attgctatac ctaatacttt ttctcaaaat ccaagtgaag
     1981 cttttcgaca tttaactaca aaaataaaag aattaactgc aaagaaaaaa gaaattgatt
     2041 ctaagatatt gaagataagc aaagacaata attcaaaaat tctgtatttg agagaatcat
     2101 ctcaagttgt acgagaggtt ttagaaactt taagaaaacc tgcagggtta aagaattttg
     2161 ctattattca aggatacatt ccaactgtta tgactgataa ttttaagaaa ctgcatcaaa
     2221 gatggataac gatattcgag cataaaaaac ataatgattt tcatcaaata gagaaagatc
     2281 atgattctga acaatcaaaa gaaaatcaag aaccttcttt atttgccaat agtcgttatt
     2341 ttagatcttt tgaaccaata acacttaccc aaggtcctcc taaatccaat gagatagatc
     2401 ctaccccaat gattgcatta atatttccta ttttttacgg attaatgttt ggagatgcag
     2461 gacaaggtgc actattggct ttgctgggtg ctacatttag aattagagga acaggaaatt
     2521 taaaaaaatg gggtactttg atccttgcgt caggaatagc tgcaataatt gcaggtttga
     2581 tagtaggaga ggcttttgga tttcatattt ttgaagttcc aggaggcgaa tatctgagat
     2641 cattaggatt cataggaata ttaaatgcgg cagacttttc agaagagacg gtccttacta
     2701 ttcttacttt ttccatcaat ataggtatta cacacctagt aagtgctttt gcattttcca
     2761 tatataaagg aattaaacaa ggcaagaaat atgaagtact aaccaatcgt ctcccgactc
     2821 tgataatgta tttggcaatt atctcgctta tgttagcggc agtaggtgct aattacaagg
     2881 ttcttgaaat gtatactaat caaaatcccg ctcccttttt ctcaaatata gctggtgatt
     2941 gggttactgt agaaatagtt acaaagattg ctttcttgat actcatgata actatggtac
     3001 tacaaattct tgcagttcct ttgggcgtta aacttggaaa agtgaaagtt catggaaatg
     3061 taaatgaaga attatttatg acggtcattg aagttatgtt gattagatta gtggaattat
     3121 ttgctaatac aattagttat actagaattg gaattatgtt actcgtacat gtagctttaa
     3181 tgggtacagc caataatgga gtagaattct ttttctccac ggggaacttt ccagttggaa
     3241 tagtagtagc aatactagga aatctgggtg taatgatgat agaaggatta ctagtctata
     3301 ttcaggcact aaggcttcat ttatacgagt ggtttacaaa attctacgat ggttcaggag
     3361 ttccatttaa aaaattggta ccagaaatgc tatacacaag cctgttatgg gaaaagaaac
     3421 tacaaaaata ataacaataa atctgattgt taaaatgata tgacctagga catctgctca
     3481 atatcctagg ccatggaaat tgttcccctt cggtttggtc gatgtattct tcttatggtt
     3541 attaggaata tttaaacgtg gtggatatca aaaaacacgt attaattcta ttatcaaaat
     3601 aatttataaa taacatgcgg ttataaatta aatgatgagt gattttaata ataaaaattt
     3661 tatattaaat caagcactat ggctaggcat atctctagct attagtattg ctatttctct
     3721 tgtagtacca ttcccctact cattacccat tataattgga gttttccttc ttctaagctt
     3781 ttatatcaga cagcgccagt ttaagaaact aggattgtct agtgctacaa tgtttggtaa
     3841 cagttctgta aactactatt gtatgaattg tggagctaaa cataaccaac tatcatgtcc
     3901 tcgctgtggc tcaaaaatga aaagagttgg cgcttaaatt tttatactta attaaaataa
     3961 aattctgaaa ttactattgt tcaaaacctt cacatagttc tatcagttta tcttgccacc
     4021 cctctgactt tattaatccg cttgccaaaa gtatcccttt tgatccaaga tttattgcac
     4081 tttgaacatc ggtcttatct actattccag ctccacaaat tacttttatg ttttcagaat
     4141 gtctgcctgc ttctttaaca gaattagtaa ttattgatgg gttaacttta ctaactgctt
     4201 ttccagttcc tattagttct ggaggttcaa tagcaatcat atttggttgt aatctagcca
     4261 attctccaac ttccttggat gttgccgcac aaactatcga agtcatattt aattgtctca
     4321 atcgttctac aagtttttga atatgtgtat gttcaattct gtgttcgcta tgatttatca
     4381 aagaaccagc tgctccatat gattttgcta attcaggaat aataaaacca gtagtagctc
     4441 ctattttttc gtcatctata tgttgacaaa tgagaggaag tttaatggat tgtgataagt
     4501 aaaataaaca attttgtgga ggtgctaaca ttatttgtac tttgttacta tttgaaatgt
     4561 cttttgcaat ttctgagagt tgtaagattt tctctccagc cacttctagg taattcttac
     4621 agttaattat aataagtcct ttcaaattct tattccattt gtactaagga ttatttttgg
     4681 ttaatctctt ttagagaatt tttctgtttc tttattgcta atgcttgatg tgaatttctg
     4741 attcaattta tccattctag cttcatatcc tttattatat tctagctcat ccggtactaa
     4801 agttgcgggg tgaataaacc cttgatttct cataatcatt gctctttcag atgcccatgt
     4861 tctttgtaag tcccaatcgg ctgttccaaa tccatcaagt ggaccagtta gtctaccttc
     4921 gtgcatacta aatactaagc attctacaat ggggattgaa taatttagac tagctggtga
     4981 attcagtttt actggcatca aagggagatg atgactacct cttgtattac ctgatacata
     5041 atgtggatta ttaaaagcac
//
LOCUS       DATCMF010000383         2012 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_380926, whole genome shotgun sequence.
ACCESSION   DATCMF010000383 DATCMF010000000
VERSION     DATCMF010000383.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2012)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2012)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2012
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_380926"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1858
                     /locus_tag="VIL14_04880"
     CDS             <1..1858
                     /locus_tag="VIL14_04880"
                     /inference="COORDINATES: protein motif:HMM:NF013592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="M1 family aminopeptidase"
                     /protein_id="HEY8523076.1"
                     /translation="LHDKKTAIDYNHDLFLISHEIAHQWYGNLVTCNEWSHIWLNEGF
                     ATYCELLYWEKSRGTNEFYFNILKYADKYFEEVDKFYKRSVVTKVYKHPDELFDAHSY
                     EKGGCILHMIRNHIGEDLFKKCLKVYIEEYNGKTVETDNFQKIIEETSGKSMHTFFDQ
                     WIYRKGHPELDVEISLEHSNNEDDNENKITRLKVKIIQSQELNDITDTSNIFEFPLEI
                     RLISSNDKGETEEQINTILINKKITEYIFHMQKNSIIEWVSIDPQFKILKKVRSLKVV
                     DETKEIQIKDLLKKQLHNGKTIIERIEAARLLKNFYSKDIVSDLKEVIIKDNFYGVSV
                     EAANTIGSFFDKNDFVKSDSAYQILKIFLLDNKLFNKLHSEIKQSIIKNIGKFEREES
                     LNLLEPFINDENYEESDFVKSAAANAIGKSSMNSSSKIKMQRIIPSLMKLINHDNTFQ
                     NIVATGAINGLKELSNDINKNIVTDIADFLVNNTEYYNEYFIRSTATSALGKFLYLKN
                     TNKNSNNFNQKVFDQLLKLLKDRRRKIKINACTALADDNSKFSTTIDPKIIQVINALI
                     DVAQYDIDGFVRRRAETSLNIIRERINEWSAKPQELAIKIRETRNEKGEIIR"
BASE COUNT          829 a          235 c          316 g          632 t
ORIGIN      
        1 tttacatgat aaaaaaactg caattgacta taatcatgat ctttttctca tttctcatga
       61 aattgctcat caatggtatg gcaatttggt aacatgtaat gaatggtcac atatatggct
      121 taatgaagga tttgctacat attgtgaatt actttattgg gaaaaaagta gaggaactaa
      181 tgaattttac ttcaacatat taaaatatgc agacaagtat tttgaagagg tagataaatt
      241 ttataaaaga tcagttgtaa cgaaagtcta taagcaccca gatgaattat ttgacgctca
      301 ctcctatgag aaaggaggat gtattttaca tatgatacgc aatcatatag gagaagattt
      361 atttaaaaaa tgtttaaagg tctatattga agaatataat ggcaagactg tagaaacaga
      421 taattttcaa aaaataattg aagaaacatc aggcaaaagt atgcatactt tttttgatca
      481 atggatttat agaaaaggac atcccgaact tgatgtagag atttccctcg aacatagtaa
      541 taatgaggat gacaatgaaa ataagattac ccgattaaag gtgaaaatca tacaatctca
      601 agaattaaat gatattactg atacttctaa catatttgaa tttccgttag aaataagact
      661 gatatcatct aatgataaag gtgagacaga ggagcagata aatacaattt taatcaataa
      721 gaaaataaca gaatatattt ttcatatgca aaaaaatagc ataatagaat gggtatcaat
      781 agatccacaa tttaaaatcc ttaaaaaagt aagatccctc aaggttgtag atgagacaaa
      841 agaaattcaa ataaaagact tacttaaaaa acaactacat aatggaaaaa caataattga
      901 gagaatagag gcagcacgtc tgcttaagaa tttctattca aaagatatag tctctgattt
      961 aaaagaagta attattaaag ataattttta tggagtatcg gtagaagctg ctaatactat
     1021 aggttcattt ttcgataaaa atgattttgt aaaatcagac agtgcatacc aaattttgaa
     1081 aatatttcta ttggataata agctatttaa taaattacat tctgaaatta agcaatcgat
     1141 aataaaaaat attggtaaat ttgaaagaga agaatcactt aatttgcttg agccttttat
     1201 aaatgacgaa aattatgaag aaagtgattt tgtaaaatca gcagcagcta acgcaatagg
     1261 aaaaagtagc atgaattcat cgtcaaaaat aaagatgcaa aggataattc cttcgcttat
     1321 gaagctaatt aatcacgata atacttttca aaatattgta gctacaggag caattaatgg
     1381 tttaaaagaa ttatcaaatg acattaataa aaatattgtt acagatatag cagatttttt
     1441 agttaataat accgaatact ataatgaata ttttataaga tctacagcta cttctgcgtt
     1501 gggtaagttt ttgtatttga aaaataccaa caaaaattca aataatttta atcaaaaggt
     1561 atttgatcag cttttaaagt tattgaaaga tagacggcga aagattaaaa taaatgcatg
     1621 cactgcattg gctgatgata attctaaatt cagcactaca atagatccta aaataattca
     1681 agttataaat gcattaattg atgttgctca atatgatata gatggttttg taagaaggcg
     1741 tgctgaaaca agtcttaata ttataagaga gcgaataaac gaatggtcgg ctaaaccgca
     1801 ggaattagct attaagatta gagaaacaag aaatgaaaaa ggggaaataa ttagatagtc
     1861 tattttgact actatataat acaaaatagt taaaattctt attatctgat ttgtttttac
     1921 ataaatttat tatttagaat tatctcacac cctgtcaaat tctaatcatc aaaaacttag
     1981 tttattttat tatgttacag aaccatgagg tg
//
LOCUS       DATCMF010000384         1578 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_314103, whole genome shotgun sequence.
ACCESSION   DATCMF010000384 DATCMF010000000
VERSION     DATCMF010000384.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1578)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1578)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1578
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_314103"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..342
                     /locus_tag="VIL14_04885"
     CDS             <1..342
                     /locus_tag="VIL14_04885"
                     /EC_number="2.1.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_function: GO:0050797 - thymidylate synthase (FAD)
                     activity [Evidence IEA];
                     GO_process: GO:0006231 - dTMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent thymidylate synthase"
                     /protein_id="HEY8523077.1"
                     /translation="DFKDCMYKCNEVFQILVNDDYPEEAQYVVNFAYKYPFFMKLNLR
                     EATHMIELRTLSQGHPDYRYVCQEIFKKIRNIHPILSEGIRFVDLKDYSLERLSSEKN
                     IEKKKRNLIDN"
     gene            complement(414..1439)
                     /gene="fen"
                     /locus_tag="VIL14_04890"
     CDS             complement(414..1439)
                     /gene="fen"
                     /locus_tag="VIL14_04890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flap endonuclease-1"
                     /protein_id="HEY8523078.1"
                     /translation="MGIDLKPILTTCPIKPSDLSDKIIAVDAYNTIYQFLATIRGPTG
                     DSLTNNKGEITSHLSGLFYRNINFLTENMKLLYIFDGKPHSLKFNEIKRRKESKQEAI
                     EKYQEALKEGRFEDAKKYSQGTVILTDEIIEQSKKILKMLGIPVIHAPSEGEATASIL
                     TKDGTVYACASQDYDSLLFGAKRLIRNLTITGKRKIPNQNKYVSIEPEIIHQSQILES
                     TKLTLEQLVDVGILIGTDFNPGGLPGIGPKTALKLIREKGRLEEIEKIKDNLKDVPYQ
                     QIREIFLNPENISIGNIEFDNPNDKEIIGFLCDTMDFSKERVESSLEKVKKSQEKRSQ
                     SLERWFK"
BASE COUNT          505 a          225 c          211 g          637 t
ORIGIN      
        1 gatttcaaag attgtatgta taaatgtaat gaggtatttc aaatccttgt caatgacgat
       61 tatccagaag aagcgcaata tgtagtcaat tttgcctata aatatccatt ttttatgaaa
      121 ttaaatttac gagaagctac gcatatgatt gaattgagaa ctttatcaca gggacatcct
      181 gattatcgtt atgtatgtca agaaattttt aaaaaaataa ggaatattca cccaatctta
      241 tctgaaggaa taagatttgt tgatcttaag gattatagtc tagaaaggct atcaagtgaa
      301 aaaaatatag aaaagaaaaa gagaaatttg atagacaatt aaatatcatt ttttacattt
      361 attttttgaa aatttgtgac tataaattgt atatatgtat atttttatta atattattta
      421 aaccaccgct ctaaagattg gcttcttttc tcttgacttt tttttacttt ttctagtgat
      481 gattctactc gttcctttga aaaatccatt gtatcacata gaaaacctat aatttcctta
      541 tcatttggat tatcaaattc tatattacct atagaaatat tttctggatt aagaaatatt
      601 tctcttatct gttgatatgg aacatctttt aaattatctt ttattttttc tatttcttcc
      661 aatctaccct tctctcttat tagctttagt gcagttttag gacctatacc tggaaggcca
      721 ccaggattaa aatctgttcc tattaggata cctacatcta ctaattgttc aagcgtcaat
      781 tttgtagatt ccaaaatctg tgattgatga ataatttccg gttctatact tacatatttg
      841 ttttgattag gaattttgcg ttttccggtt attgttagat tacgaataag tcttttcgct
      901 ccaaaaagta gagaatcata atcctgactt gcacaagcat atacagttcc atctttagtt
      961 aaaattgatg ctgttgcttc tccctctgat ggtgcgtgaa taacaggaat ccctaacatt
     1021 tttaatattt tcttggattg ctcaataatt tcatccgtta aaattactgt gccttgacta
     1081 tattttttag catcttcaaa tctaccctcc tttaatgctt cttgatattt ttctatagct
     1141 tcttgtttag attcctttct tcgttttatc tcattaaatt ttaatgaatg aggttttcca
     1201 tcaaaaatat ataataattt catgttctct gttaagaaat taatatttct ataaaataaa
     1261 ccacttaagt gacttgttat ttctcctttg ttattagtaa gagaatctcc agtaggacca
     1321 cgaatcgttg ctaaaaattg ataaatcgta ttatatgcat ctactgcaat tattttatct
     1381 gataaatcag atggttttat tggacaagta gttaaaattg gttttagatc tattcccatt
     1441 tgttaagtat atatgtattt aatgtacctt ttattttttc atattatatt attaaaataa
     1501 tagaatgtga ttgttgtcat atcaaaataa tcacgacatg aggattagta ttatagatct
     1561 gtataatagt gagaatat
//
LOCUS       DATCMF010000385         1629 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_579384, whole genome shotgun sequence.
ACCESSION   DATCMF010000385 DATCMF010000000
VERSION     DATCMF010000385.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1629)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1629)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1629
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_579384"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..370
                     /locus_tag="VIL14_04895"
     CDS             <1..370
                     /locus_tag="VIL14_04895"
                     /inference="COORDINATES: protein motif:HMM:TIGR00269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TIGR00269 family protein"
                     /protein_id="HEY8523079.1"
                     /translation="IGWIYPEPIYYGKNEIKKIKPFIEIYEREIVFYALQQNIPFQSE
                     QCPYQDESIRSEIREFFNSLEETRSGIKYNTYNSLLKISKILKKSDSSVKNKCTICGL
                     DSTQSVCSVCKNIKILKNGL"
     gene            405..721
                     /gene="ffs"
                     /locus_tag="VIL14_04900"
     ncRNA           405..721
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="VIL14_04900"
                     /product="signal recognition particle sRNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF01857"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="archaeal-type; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /db_xref="RFAM:RF01857"
     gene            complement(787..>1629)
                     /locus_tag="VIL14_04905"
     CDS             complement(787..>1629)
                     /locus_tag="VIL14_04905"
                     /EC_number="2.5.1.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0090560 -
                     2-(3-amino-3-carboxypropyl)histidine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0017183 - protein histidyl modification to
                     diphthamide [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-(3-amino-3-carboxypropyl)histidine synthase
                     subunit 1/2"
                     /protein_id="HEY8523080.1"
                     /translation="CWGSCDVNTHAADMLGADLLFNIGHTISMETIDKKVIMINAYDD
                     VKFDIVVEKFAKDTPNKEYKTLGIVTDSQHLNQLQPSKKILENHGFKIIIGDGKGQLN
                     DGQVFGCEFYPASDIQKRIDAYIFLGQSMFHSVSIAMSTQKPTFMLDPYFNEFQQVND
                     KARIMEKKTILSIYKAQEATKIGIIIGLKEGQFSKIKALKLKKSLEVLGKDIQLIALT
                     EITEERLRNFKGIDAYIQVACPRIAIDNHFTKPLLSVPQAEALIKILKKEPIEDFLKL
                     RHWL"
BASE COUNT          537 a          256 c          265 g          571 t
ORIGIN      
        1 aataggatgg atatatccag aaccgattta ttatggtaaa aatgagataa aaaaaattaa
       61 accattcata gaaatttatg aacgagaaat agttttttat gcacttcaac aaaatattcc
      121 atttcaatcc gagcagtgtc catatcaaga tgaaagtatt aggagtgaaa taagggaatt
      181 ttttaattct ttagaagaaa cccgatctgg cattaagtat aatacctata attcactttt
      241 gaaaatatcc aaaatattaa aaaaatctga tagttcagtg aaaaataaat gtacgatatg
      301 tggacttgat tctactcaat ctgtttgttc agtttgtaaa aatatcaaaa ttttaaaaaa
      361 tggcttataa acaaatataa cttaaaatag ttgaataaag attgcggagg cagggaggat
      421 tggggtgcca gccgtaccct tctctggaaa tcggctttat gccaggatca gtaactatta
      481 gataaatcct tggataggaa tttcctgcgt atcaagttaa aatgaaatca cgccgaactg
      541 gacggatatg agcagcaaac catgcgaagg tatggtattg actgttaatt ctcgaaatgg
      601 gtgaggtccg ggagggagca accctaaggt gacataaccg tgctggttcg tctacgtggt
      661 ggatcatacg agatgcgaga ttgggatttt tatcaaaggt ggtactaata ggctgccttc
      721 gcatatagaa ccataatctc aaataacact tctacattat tttgcaaaat taattttttt
      781 atattgttat aaccaatgac gtaactttaa aaaatcttca ataggctcct tttttaaaat
      841 cttaattaaa gcctcagctt gggggacaga aagtaatggt ttagtaaaat gattgtctat
      901 agctattcta ggacaagcta cttgaatata agcatctatt cctttaaaat ttcttaatct
      961 ttcttcagta atttctgtta aagcaattaa ttggatatcc tttcctaaga cttccaaaga
     1021 tttttttaat tttaatgctt ttatctttga gaattggcct tcttttagtc ctattattat
     1081 tccaattttg gttgcttctt gtgctttata aatagataaa atcgttttct tttccataat
     1141 tctagccttg tcatttactt gttgaaattc attaaagtat ggatccaaca tgaaagtagg
     1201 tttttgggtt gacattgcaa tacttacaga atgaaacata ctttggccta agaaaatata
     1261 agcatctatt ctcttttgta tatcagacgc tggataaaat tcacagccaa aaacttgacc
     1321 atcatttaac tgtcctttac catcacctat tattatttta aatccatgat tttctaatat
     1381 ttttttcgaa ggttgtaatt gatttaagtg ttggctatcg gtaactatac ctaatgtttt
     1441 atattcttta tttggcgtat ctttagcaaa tttttctact actatatcga atttcacatc
     1501 atcgtatgca ttgatcataa ttactttttt atcaatagtt tccatagaaa ttgtatgtcc
     1561 aatattaaac aacagatctg ctcctagcat atctgcggca tgtgtgttga cgtcacaaga
     1621 gccccaaca
//
LOCUS       DATCMF010000386         1802 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_314437, whole genome shotgun sequence.
ACCESSION   DATCMF010000386 DATCMF010000000
VERSION     DATCMF010000386.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1802)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1802)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1802
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_314437"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..384
                     /locus_tag="VIL14_04910"
     CDS             <1..384
                     /locus_tag="VIL14_04910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylaminoadipate kinase"
                     /protein_id="HEY8523081.1"
                     /translation="NTLLIRNLIEGNFVPVVSPIALSEENEFLNIDGDRAAAYIAGGL
                     SADKVIFITNVNGLILNDELVKEITYDKAKESLPNIGHGMEKKVMACIESLDMGVKET
                     IIASGDVENPISSAIFHTNCTVIRK"
     gene            381..1559
                     /locus_tag="VIL14_04915"
     CDS             381..1559
                     /locus_tag="VIL14_04915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HEY8523082.1"
                     /translation="MSEDNYLGNLYQRFPINISKGKGAIVWDVSGNEYIDCMGGYGVA
                     LIGHCNDRVVNAIKNQSEKLITCHMSIYNNVRLEFLEKMSKISPKKLSKIFFSNSGAE
                     STEAALKFSRKFTGKSGIIAMSGGYHGKTFGALSVTHNEKYRKSFQPLLEGVKFVPYS
                     NPSKIEESLDDSIGTVIIEPIQGETGIIVPSDGVLQQIRKICDQNNLVLIFDEIQTGL
                     GRTGRMWAGEHWSTTPDIMCLAKGIAGGLPMGLTLCKPEILDAMKVGEHSSTFAGNPL
                     SCSAGIATIESIIEENLVENAAKVGNIFKNGLFQLKENHRIVRDVRGLGLMLALELRF
                     DIKDILFDGIKEGLLMLYSGRNIIRLLPPLVLDEVKVAKTLSIMDKLLTKEEERKDVK
                     "
     gene            1549..>1802
                     /locus_tag="VIL14_04920"
     CDS             1549..>1802
                     /locus_tag="VIL14_04920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AsnC family transcriptional regulator"
                     /protein_id="HEY8523083.1"
                     /translation="MLNNIDSFDEKIIKILHNDARKPFVEIANTIGLSESAVRRRIKN
                     LTDNNVIKKFTIEINNRGKTCAITLISVASSSDSSTVTSK"
BASE COUNT          662 a          237 c          349 g          554 t
ORIGIN      
        1 aatacactat taattagaaa tttaatagaa gggaattttg taccagttgt ttctccaata
       61 gctttaagcg aagaaaatga atttttaaat attgacggcg atagggctgc tgcctatatt
      121 gcagggggac tatccgcgga taaagtaatt tttattacta atgtcaatgg tttaattcta
      181 aatgatgagc tggtaaaaga aataacgtat gataaagcaa aggaatcttt accaaacatt
      241 ggtcatggaa tggagaaaaa agtaatggca tgtatagaat ctttagatat gggtgttaag
      301 gaaacaatta tagcttcagg tgatgttgaa aatccaatct cttctgcaat atttcatact
      361 aattgtacgg tgataagaaa gtgagtgaag ataattatct tggaaatctt tatcagagat
      421 ttccaataaa tatttcaaaa ggaaaaggag ctatcgtttg ggatgtttcg ggaaacgaat
      481 acattgattg tatgggtggt tatggtgtcg cattaattgg ccattgtaac gatcgtgtag
      541 taaatgcaat taaaaatcaa tctgagaaac ttataacatg tcatatgtct atctataaca
      601 atgttcgatt agaattccta gaaaaaatgt ccaaaatctc accaaaaaaa ctatcgaaga
      661 ttttctttag caatagcggt gctgaatcta ctgaagctgc tttaaagttt tctcgtaaat
      721 tcacaggtaa aagtggaata atagccatga gtgggggata tcatggaaaa acttttggtg
      781 cattatctgt aacacacaat gagaaatata gaaaatcatt tcaaccattg ttagaaggag
      841 taaaatttgt accttacagt aatccatcaa agattgaaga atcattggat gactctattg
      901 ggacagttat tattgaacca attcaaggtg aaacaggaat aattgttcca tcagatggag
      961 ttctacaaca aataagaaag atttgtgacc agaataattt agtattaatt tttgatgaaa
     1021 tacaaactgg attaggacga acgggtagaa tgtgggcagg tgaacattgg tcaacaactc
     1081 ccgatattat gtgtctagct aaaggtatag ctggaggatt accaatgggt ttaactctat
     1141 gtaaacctga gatcctagat gctatgaaag taggagaaca ttcttcaact tttgcaggaa
     1201 atccactttc ttgttctgca ggtatagcta ctatagaatc tataatagaa gaaaatctcg
     1261 tcgagaatgc tgccaaagtt gggaatattt tcaaaaatgg attgttccaa cttaaagaga
     1321 accatagaat tgtaagagat gtacgaggat taggtttaat gttagctctt gaattacgtt
     1381 ttgatattaa ggatatatta tttgatggaa ttaaagaagg tctccttatg ttatactcag
     1441 ggagaaatat aattcgatta ttgccaccat tagtacttga tgaggttaag gtagcaaaaa
     1501 ccttaagcat tatggataaa ttattaacta aagaagagga aagaaaagat gttaaataat
     1561 attgattcat tcgatgaaaa aataataaag attcttcaca atgatgctag aaaaccattt
     1621 gtagaaatag ctaatactat tggcttatct gaatcagcag taaggagaag gattaaaaat
     1681 ttaactgata ataacgttat taaaaagttc acgattgaaa tcaataatag aggaaaaact
     1741 tgcgcaataa ctcttatttc cgttgcttcc agctctgatt catccacagt aacctctaaa
     1801 tt
//
LOCUS       DATCMF010000387         2400 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_579442, whole genome shotgun sequence.
ACCESSION   DATCMF010000387 DATCMF010000000
VERSION     DATCMF010000387.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2400)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2400)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2400
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_579442"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(188..1651)
                     /locus_tag="VIL14_04925"
     CDS             complement(188..1651)
                     /locus_tag="VIL14_04925"
                     /inference="COORDINATES: protein motif:HMM:NF014411.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase"
                     /protein_id="HEY8523084.1"
                     /translation="MRTTNIEKIEISKQNLPININSTLLRDIFNTAKLENSPILSVVI
                     GTKPDFYKQAPLVVEAKREKLPVFVIDTGQHFDDILGFGIKEFKLEESVGCDLQIRGD
                     LMEKASELILKFGSFGRFCKEEFGSTSKLLPVVHGDTLVAGIAPLAWVFGMGQKVAQN
                     EAGLRSMSPEIMKKLKITQEPTLDLIEKYIQEQFDGKWFIAREEPFPEQIDTWICSAG
                     TQYFFAPTQLNKDNLVKEGYPDEFVHVVGNSVVDAIYLKRKQKVSQSIFELYPELEKG
                     KWIRMDIHRRENLTEHRFKSIIHGLVNIVKYSDHKVVLVMLNATKSALKFYGLEEKVR
                     LLAEEFPQKFLITPLWKEYGQVIEFLDSGRCWAEMTDSGSMQEELLYFKNVLSLTIRL
                     NTDRPETIFDAKSNLLIPPINSEWITSMVNHLYDKFEDFGIKSKNKKEIYGEPGQVSK
                     TIAKIIKKQFEDKNTSFYPWFHQRINLWKEDNDLQYM"
     gene            complement(1652..2071)
                     /locus_tag="VIL14_04930"
     CDS             complement(1652..2071)
                     /locus_tag="VIL14_04930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523085.1"
                     /translation="MSIASLGLAIMFVLLVLSFYNFLIGSEGKGPERFVDVRGVVIKT
                     LSISGAPSIILALISFGLSKNYGNRLSGMLLSFTGIVLIIGMVVSLSLTSKVNSEFFH
                     PLLLIVPYTFILGGIAILIIGSIVYLKTNKGIKNREI"
     gene            complement(2107..>2400)
                     /locus_tag="VIL14_04935"
     CDS             complement(2107..>2400)
                     /locus_tag="VIL14_04935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-1-phosphate uridylyltransferase"
                     /protein_id="HEY8523086.1"
                     /translation="KISQKEIFDLAMILRSTLGGMSQVLNNPSFNLIFQLSPEKKNSR
                     QFHWHIEIYPHINDLTGLEKGFGVFVNSILPETAAMKLGAAARKEIAKIVGVE"
BASE COUNT          794 a          429 c          329 g          848 t
ORIGIN      
        1 aatagttaaa attaatcttg tttctaatat tgaaaattag acaattaaat ttaagaaaaa
       61 tgaataagtt aacgaggtaa aaaaattata ataaatttta tctaatcaat tataagttct
      121 aatgtgatta tgtaagcaaa gaagaagata tctgaaaata aatccattat ttaatgtaat
      181 gcagtatcta catatattgg agatcattat cttctttcca taaatttatc ctttgatgaa
      241 accaaggata gaaacttgta ttcttatctt caaattgttt cttaattatt ttggcaattg
      301 ttttagatac ctgccctggt tcaccataaa tttccttttt attctttgac tttattccaa
      361 aatcttcaaa tttatcatat aaatgattca ccattgaggt tatccattca gaatttattg
      421 gaggaatcag taagttactt ttagcatcaa aaatagtttc aggtctgtcg gtgtttaacc
      481 ttatagtaag agacaataca tttttgaaat ataataattc ctcttgcata gaaccggaat
      541 ctgtcatctc cgcccaacat cttccactat ctaagaactc tattacttgc ccatattctt
      601 tccataaagg agtaattaag aatttttgag gaaattcttc tgctagtaat ctaacctttt
      661 cttctagacc ataaaatttc aatgcagact ttgtagcgtt gagcataact aatacaacct
      721 tgtgatctga atattttaca atattaacta gtccatggat tattgactta aaccgatgtt
      781 cagtgagatt ttcccttcta tgtatatcca ttcttatcca ttttcctttt tctaactcag
      841 gatataattc aaaaatactt tgagatactt tttgtttcct ttttaaatat atcgcatcta
      901 caactgaatt acccacaacg tgtacaaatt catcagggta accttcttta acgagattat
      961 ctttattcaa ttgagtagga gcaaaaaaat actgtgttcc tgcagagcag atccaagtat
     1021 ctatttgttc tggaaatggt tcttctcgtg cgataaacca ctttccatca aattgttctt
     1081 gaatatattt ttctatgaga tctaatgtgg gttcttgtgt aatttttaat tttttcataa
     1141 tttcagggct cattgatctt aatcctgcct cgttttgagc taccttctgg cccattccaa
     1201 aaacccaagc caagggagct attcctgcaa ctaaggtgtc gccatgaacg actggaagca
     1261 attttgaggt agaaccaaat tcttctttac aaaatctccc aaaagaacca aacttaagga
     1321 tcaattcact ggctttttcc ataagatctc ctcttatctg caagtcacaa ccaaccgatt
     1381 cctctaattt aaattcctta attccaaaac ctaaaatatc atcaaaatgc tgaccagtat
     1441 ctataacaaa tacgggaagt ttttctcttt ttgcctcaac aactaaggga gcttgtttat
     1501 agaaatctgg cttagtaccg ataactaccg acagtattgg actgttttct aattttgctg
     1561 tattaaaaat atctcttaat aatgtactgt ttatgttgat aggtaaattt tgtttcgata
     1621 tctcaatctt ttcgatattt gtagtcctca attaaatctc cctgttttta attcctttgt
     1681 tagtttttaa ataaacaata gatccaataa taagtattgc tattcctcca agtataaaag
     1741 tataaggaac gatgagaaga agaggatgaa aaaattcact atttacttta gacgtaagcg
     1801 aaagagaaac taccattcct atgattaaaa caattccagt aaaagacaag agcattccac
     1861 tcaatctatt accatagttt tttgataaac caaaggatat cagggctaag attatggaag
     1921 gagcaccaga aatagaaagt gttttaataa ccactcctcg aacatcgaca aacctctctg
     1981 gtccttttcc ttcactaccg attaaaaaat tataaaaaga aagaactaac aaaacaaaca
     2041 ttattgctaa tcctagcgat gctattgaca accaactctc gaggcccaat ctatttgtaa
     2101 atatatctat tcaactccga ctatttttgc aatttctttt cgtgctgctg cacccaattt
     2161 catggcggct gtttctggta gaatactatt tacgaaaaca ccaaatcctt tttctaatcc
     2221 agtaagatca ttgatatgtg gataaatttc aatatgccaa tgaaattgtc tgctattctt
     2281 cttttctggt gaaagctgaa aaattagatt aaaagatgga ttgtttaata cttgggacat
     2341 tcctcctaga gtagatctta aaatcatggc gaggtcaaat atttctttct gagatatttt
//
LOCUS       DATCMF010000388         3306 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_314467, whole genome shotgun sequence.
ACCESSION   DATCMF010000388 DATCMF010000000
VERSION     DATCMF010000388.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3306)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3306)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3306
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_314467"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..388)
                     /locus_tag="VIL14_04940"
     CDS             complement(<1..388)
                     /locus_tag="VIL14_04940"
                     /inference="COORDINATES: protein motif:HMM:NF014035.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TSUP family transporter"
                     /protein_id="HEY8523087.1"
                     /translation="MNDLLLIVLAPIFFVVSFFYSSVGFAGGSSYIAILVIVGVNLYT
                     VPPISLALNIIVSSAAFFNYLKAGHLSLRLSFPLLISIPFAFIGGSIILPEKMLTLIF
                     VISLFSASAALLLSGRKRITFQREKIR"
     gene            complement(384..1334)
                     /gene="moaCB"
                     /locus_tag="VIL14_04945"
     CDS             complement(384..1334)
                     /gene="moaCB"
                     /locus_tag="VIL14_04945"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: protein motif:HMM:NF002947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional molybdenum cofactor biosynthesis
                     protein MoaC/MoaB"
                     /protein_id="HEY8523088.1"
                     /translation="MNEETNSYKGMFDVSIKGDTLRIATAQAIIKVSPDSIDLIKNKR
                     TPKGDIIEAAKISAALGAKKTWELIPYCHSIPIDHISTQILLQESLIQIKVSVKSVWK
                     TGVEMEALTGCCTAALTIYDMLKPIDNHLIIESIKLLDKTGGKRDFIEYLDKKITVAI
                     FVISDSTFNGTRIDKSGKMIVNRLENVDITKNIEIVGYEILPDSVDKITTYLIKYSDE
                     KKVDLIITSGGTGFSKRDVTPEATKMVIDKEANGISEAIRSYGQRRTPLSMLSRGMSG
                     TRGDTLIVNLPGSTKAVSESLDLLLPSIFHVFNMLGGKGH"
     gene            complement(1327..1746)
                     /locus_tag="VIL14_04950"
     CDS             complement(1327..1746)
                     /locus_tag="VIL14_04950"
                     /inference="COORDINATES: protein motif:HMM:NF014448.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein MoaE"
                     /protein_id="HEY8523089.1"
                     /translation="MISTTKNTINQTKIFDQVKDDSCGAIISFTGLVRDHNSKGKVEG
                     IFYEAYDEMVEEILKNIEKEVFKKWNIKKFIAVHRTGDLQVGEISVIVAVSSEHRKDA
                     FEACSYGIENIKKRCPIWKKEKTQFGNEWIEGVKISE"
     gene            complement(1762..2028)
                     /locus_tag="VIL14_04955"
     CDS             complement(1762..2028)
                     /locus_tag="VIL14_04955"
                     /inference="COORDINATES: protein motif:HMM:NF014636.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoaD/ThiS family protein"
                     /protein_id="HEY8523090.1"
                     /translation="MNLLEYAILKIRLFGILREKMDSDDLIISIHDTSISLKKLRKYL
                     EELYPSLGLNEINFVFAVNKVICNEDINVKSSDEIAIIPPISGG"
     gene            complement(2034..3059)
                     /gene="moaA"
                     /locus_tag="VIL14_04960"
     CDS             complement(2034..3059)
                     /gene="moaA"
                     /locus_tag="VIL14_04960"
                     /EC_number="4.1.99.22"
                     /inference="COORDINATES: protein motif:HMM:TIGR02666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HEY8523091.1"
                     /translation="MTQNNSSKILKDSFNRVARKLRISVTDKCNMKCIYCMPNGNIKW
                     FDNKEILNFQEIVRITSIFTQLGITKVRITGGEPLLRPSLENLIRDLTKIQNIKTISM
                     TTNGILLEDKINQLKSAGLNTLNISLDTFREERFRTLNGISNLNKVLRGIQKANELGF
                     KIKINTVIIRDWNDDEIINFVKFARDTKLSVRFIEFMPLDGSGIWNHNLVVTKQEIIK
                     KIKSKFHNVISFDENNNSSFQSDPATVYNFNDGKGKIGFISSITEPFCSNCDRVRLTS
                     DGRFLTCLFEKEGYDLKKMIRNAKTDQEIMDYILSCHTKKPEGIVELIRINGLRPTLN
                     LMHTIGG"
     gene            complement(3069..>3306)
                     /locus_tag="VIL14_04965"
     CDS             complement(3069..>3306)
                     /locus_tag="VIL14_04965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523092.1"
                     /translation="IYFKVVKKGKIGTTHDSLHLIKKDNNDVPIENIVEIVTKDKNNK
                     LLVEKVVKVQDLPSCCKHYFLEKLSHLNKIKNCT"
BASE COUNT         1053 a          570 c          407 g         1276 t
ORIGIN      
        1 ttcttatctt ttcgcgttga aatgttattc tttttcttcc agacaatagc aatgcggctg
       61 aagcagaaaa aagagatatg acaaaaatca atgttaacat tttttctggt agaattatag
      121 aacctccaat aaatgcaaaa ggtattgaaa ttaataatgg aaatgataat cttaatgata
      181 gatgacctgc ttttagataa ttaaaaaagg ctgcagaaga tacaataatg tttaatgcta
      241 aagagattgg tggaactgta tacaaattga caccaacaat aactaagata gctatatagc
      301 tacttccccc agcaaatcct acagaagaat aaaaaaaact tactacaaag aagataggag
      361 caagtactat tagtaaaagg tcattaatga cctttccctc ctaacatatt aaatacatgg
      421 aatatgctag gcaaaagaag atctaatgat tctgatacag ccttagtgct tcctggtaaa
      481 tttacaatta aggtatctcc tctagttcca gacattcccc ttgaaagcat tgataatggt
      541 gttctccttt gaccatatga tcttatggct tcagaaattc catttgcctc tttatcaata
      601 accattttag ttgcttctgg agttacatct cttttactaa acccagtacc tcctgaagtt
      661 attattagat ctactttttt ttcatcagaa tatttaataa gatatgtcgt aattttgtct
      721 acactatcag gtaatatttc ataaccaaca atttcaatat tcttagtgat atcaacattt
      781 tccaatctat taacgatcat ttttcccgac ttgtcaattc ttgttccatt gaaagtagaa
      841 tcacttataa caaatatagc aacggtaatt tttttatcaa gatattctat aaaatctctc
      901 ttaccaccgg ttttatctaa caattttatt gattctatta ttagatgatt gtctattggt
      961 ttgagcatat cgtatatggt tagtgccgct gtacaacatc cagttaatgc ttccatttca
     1021 actcctgttt tccagacact tttaacacta actttaattt gtattaatga ttcttgtaac
     1081 aatatttgtg tagaaatgtg atctattgga atagaatggc aataagggat taattcccat
     1141 gttttttttg ctccaagagc agctgaaatt tttgctgctt ctataatatc tccctttggt
     1201 gttcttttat ttttaatcag atctatacta tcaggagata ctttgattat tgcttgtgca
     1261 gtagcaattc ttaatgtgtc tccttttatg gatacgtcaa acataccttt gtaggaattc
     1321 gtttcttcat tcacttatct taacaccttc tatccattca ttgccaaatt gagttttttc
     1381 ttttttccag ataggacacc tttttttaat attctcaatt ccataactac atgcttcaaa
     1441 tgcatctttt ctatgttctg aagaaactgc aactataacg cttatttctc caacctgaag
     1501 atctccagtt ctatgtactg caataaattt tttaatattc cactttttga aaacctcctt
     1561 ttcgatgttt tttaatattt cttcaaccat ttcatcatag gcctcataaa aaataccttc
     1621 gactttcccc ttagaattat ggtctctaac aagtccggta aaagaaatta ttgccccaca
     1681 agaatcatcc ttaacttgat caaatatttt tgtttgatta attgtatttt ttgttgttga
     1741 aatcaaataa gttctccacc attatccccc acttattggt ggtataatag caatttcatc
     1801 ggatgatttt acattgatat cttcgttgca tattacttta ttaacagcaa atacaaaatt
     1861 tatctcattc aaacccagag aagggtatag ctcttcaaga tattttctta gttttttcaa
     1921 tgaaattgac gtatcatgta tagaaataat caaatcatcg ctatccattt tctctctcaa
     1981 aattccaaat aatcttatct ttaaaattgc atactccaat aagttcattg ttatcaacca
     2041 cctattgtat gcataagatt taaggttggt ctaagtccat taattctaat taattctact
     2101 attccctctg gtttttttgt atgacaactt aaaatataat ccataatttc ctgatcagtc
     2161 tttgcatttc gaatcatctt ctttaagtca taaccctctt tttcgaaaag acaagtcagg
     2221 aatctaccat cagaagtcaa tctcacccta tcacaatttg aacaaaaagg ttctgtaatt
     2281 gatgaaatga atccaatttt tccttttcca tcattgaaat tatagaccgt ggctggatca
     2341 gattgaaaag aagaattatt attttcatca aaagagataa cattatgaaa tttagatttt
     2401 atctttttta ttatttcttg cttggtaaca acaagattat gattccaaat acccgatcca
     2461 tcaagaggca taaattcaat aaaacgaaca cttaatttag tatctctggc aaatttgacg
     2521 aaattaatta tttcatcatc attccaatct ctaattatta cagtattaat ttttattttg
     2581 aatcctaact cgtttgcttt ttgaataccc ctgagaactt tgtttaaatt agaaatacca
     2641 tttaaggttc taaatcgttc ttctctaaag gtatcaagac taatatttag agtattcaat
     2701 cctgctgatt ttaattgatt tattttatct tctaataaaa tcccattagt agtcatactg
     2761 atagttttga tattttgtat ctttgttaaa tccctaatca gattctctaa cgaaggtcta
     2821 agtaatggct ctccaccagt aattcgaact tttgttattc ctaattgagt aaaaatagat
     2881 gttattctaa ctatttcttg aaaattgagg atttctttat tatcgaacca tttaatgttt
     2941 ccattaggca tacaataaat acatttcata ttacacttat cagttacaga aattcttaat
     3001 tttcttgcta ctctattaaa actatctttc aaaattttag aagaattatt ttgagtcaat
     3061 tcttttcatt atgtacaatt ttttatttta tttagatgtg aaagtttttc aagaaaataa
     3121 tgtttacagc atgatggtaa gtcttgaact ttaactactt tttccacaag taatttattg
     3181 tttttatctt ttgtaacaat ttctactata ttttctattg gaacgtcgtt attgtctttt
     3241 ttaatgagat ggagagaatc atgtgtcgtc cctattttac ccttctttac aactttaaag
     3301 taaatt
//
LOCUS       DATCMF010000389         2190 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_446827, whole genome shotgun sequence.
ACCESSION   DATCMF010000389 DATCMF010000000
VERSION     DATCMF010000389.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2190)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2190)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2190
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_446827"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            122..640
                     /locus_tag="VIL14_04970"
     CDS             122..640
                     /locus_tag="VIL14_04970"
                     /inference="COORDINATES: protein motif:HMM:NF015378.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY domain-containing protein"
                     /protein_id="HEY8523093.1"
                     /translation="MNNNNHNNSIGNAFAQMDPEDSAMMEDMEMNEDMMTMSNQSDGM
                     KMMNWTGTIDVKSTIGEAFKSKVTVNIIDAINVAQTNVGANSFVKKAELTPAHGYLVY
                     KIMVVDENMKKYKVIVDPGNGQVLMKKEVTGYDDDEEHKMKYGEEQYSKYNHDYDYDQ
                     KKMMKMTKDEKY"
     gene            1202..1657
                     /locus_tag="VIL14_04975"
     CDS             1202..1657
                     /locus_tag="VIL14_04975"
                     /inference="COORDINATES: protein motif:HMM:TIGR03618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PPOX class F420-dependent oxidoreductase"
                     /protein_id="HEY8523094.1"
                     /translation="MTEMSKAEIGRFLMKETFTGKLATVKEDGSSHVVPIWFVLEKKK
                     SRDRIGNIIFTTGSTSVKANNIRRDNRISICIDDQIPLFSFVTIFGTAKIYPYKQKEV
                     LKWATEIAERYMGKSNAEAYGRRNSEEGLVLVRIKPTRIIAEKNIASWE"
BASE COUNT          841 a          260 c          342 g          747 t
ORIGIN      
        1 gtgcttctta ataaaaattg tccctaattg ttatgaatta tgataaacca ccatttttga
       61 tgaagagatc tttacaactt caaccttctt aatcgctctt ctagcaatag gtcttatagg
      121 tatgaacaat aacaatcaca acaacagtat tggtaatgca tttgctcaaa tggatccaga
      181 agattctgca atgatggagg atatggaaat gaatgaagat atgatgacaa tgtcaaatca
      241 atcagatggc atgaaaatga tgaattggac tggaacaatt gatgtaaaat ctactattgg
      301 tgaggctttc aaatctaaag ttactgttaa cataatagat gcaataaatg tagcacaaac
      361 aaatgttgga gcaaattctt tcgtcaagaa agcagagtta actcctgcac atggatatct
      421 agtatacaag ataatggtag ttgatgaaaa tatgaaaaaa tataaagtca ttgtagatcc
      481 aggaaatgga caagttttga tgaaaaagga agttaccggg tatgatgatg atgaggaaca
      541 taaaatgaaa tatggtgaag aacaatatag caaatacaat cacgattatg actatgatca
      601 aaagaaaatg atgaaaatga cgaaagatga gaaatactaa ataaaagtat ccttaactaa
      661 tccaacaaat tattaacata ctcaatcttt tttttatttt tcacaatctc aatacacgca
      721 ttttatctat ttttgctagt tcaaaggtaa cagtttgaat atgtaatata ttttttcttt
      781 ctaaagaagg accgaaatag tcacatttgt atcaaatccc agtctcccct tgatctctgg
      841 ttttcaactc tatttttaga gttcaagaag caatagttat aggaactaag aattaatctt
      901 acttttccaa tcatttattt acaaaatcaa taaaacaaat aaaatttgaa atctacaaac
      961 tattaataat gttttgaaaa gactaggatt ctgtgaattt gaaccttttt ataaagtaag
     1021 agcaattgtt tttgaaattt attagaattt ccaagactat ttagcaatac aatgagttac
     1081 attttataat aatttaatat ctaaatatat cgataatata aaatcttaat ctgcatagta
     1141 aaatcgttag ataaagaaga acacatctta tattgaaaga atactgtaag taataacaac
     1201 aatgacagaa atgtccaaag ccgaaatagg aagatttctt atgaaagaaa cctttacagg
     1261 aaaacttgct acagttaagg aagatggaag ttctcatgtt gttccaattt ggtttgtatt
     1321 agagaagaag aaaagtagag acagaatagg aaatattatt tttacaactg gtagcacatc
     1381 agtcaaagca aacaatattc ggcgagataa tagaataagt atttgtatag atgatcagat
     1441 accactattt tcctttgtaa caatatttgg cacagcaaaa atatatcctt ataaacaaaa
     1501 ggaggtttta aaatgggcta ctgaaatagc agaacgctat atgggtaaaa gtaatgcaga
     1561 agcgtatggt agaagaaata gtgaggaagg tttagttctt gtacgaataa aacctacaag
     1621 aataattgca gaaaaaaata tagctagttg ggaataatga tgatgtttat tattacagcg
     1681 taggcatgtt taagttcatt tatttctaat cgtagaaatc aatttgttgt atgttgatat
     1741 atatatgtat atttatcatt tctcatatta tttatcttat gatgaaatca tattcctttt
     1801 atgtcgcaat ctgtttttga gcttttatgg atattgttga ttataccaat ttgtatagta
     1861 aaatttttag atctttgagt gtaagatatt tgtcataagc tgaaattatt ttatgccaaa
     1921 agatggtaat atttttttat aattttaaat tattttcttt tcatctatca accttagata
     1981 ttttttcaat tatctcttac tatgaagttc taataagttc aaatgaatat gtggaaatat
     2041 tgggatacaa tctttttaga attttaacca atccaataat ggataaaaac aatttattat
     2101 taaggaattt aatttttgaa tttaaacttt gagaatttaa aattctataa atattattag
     2161 tagattaact tgtattatgt ggaagtggta
//
LOCUS       DATCMF010000390         3021 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_514578, whole genome shotgun sequence.
ACCESSION   DATCMF010000390 DATCMF010000000
VERSION     DATCMF010000390.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3021)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3021)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3021
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_514578"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(129..1109)
                     /locus_tag="VIL14_04980"
     CDS             complement(129..1109)
                     /locus_tag="VIL14_04980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEY8523095.1"
                     /translation="MNQLSNNHDIHIVGFERMKEEEHDAVCAWATSKNVMVNYTKKCS
                     LDFDNYILHDGKNMSVDLGESKHIDIGLKGMVSYDKLKLIQDMIKGTEIKYGKAPKKE
                     NLEADFDLIIDSTGFHRNYLPKLDYEMWIPCVQYKVKYDNNNIPYDDFYLKGFPSMSG
                     YFWYFPLGNGYAHIGAGDFTRKNHNLYVENFLKKYKCEIIKKNGRPVRISPPSKSEPF
                     YDGKKSIGVGESIGTVYPLLGEGIIPSTICADLFINNLNNFKKYREQVLKHFSIYPLV
                     FKFILMKITGTFNLVKNSFDLLRIYHHMKNNQDRYGMEVKIAELMKVSTL"
     gene            1115..1432
                     /locus_tag="VIL14_04985"
     CDS             1115..1432
                     /locus_tag="VIL14_04985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523096.1"
                     /translation="MLLQPQFPPQQFSLIQYYYPKIKIYCEKIEQVPLVKKKKEMPGS
                     ARAGIAILVLGAMLLGVGYYQDRGALSLYGLIMSICGFSLYMISSIYISRKNNKAKGS
                     YSK"
     gene            complement(1420..>3021)
                     /locus_tag="VIL14_04990"
     CDS             complement(1420..>3021)
                     /locus_tag="VIL14_04990"
                     /inference="COORDINATES: protein motif:HMM:NF019869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HEY8523097.1"
                     /translation="KVHNYIDELSIIPEDLRQEFHNVVDWLKERACARKSGLGTKLPW
                     DHEWIIESLSDSVIYMAYYIISKFINEQKYSMKKSLNNIDESFFDYILLGIGNVQDVA
                     KNCNLSISLIQEIRNEFIYFYPVDSRHSGRDLVPNHLSFFLFNHIAIFEKKFWPHQIV
                     VNGSVLMEGKKMSKSLGNIIPLRTAIQEYGADTIRLAILISSELLQDADFSFDTARSI
                     RIKLLEFYTLSQQILNSNFYNKVSNPNLSLDELLYLDISQNGYSLELEDRWLISKLQR
                     LINNVTRSMETLRIREALHNILYVFDQHIQWYKKRIKAKKRSNDNVVNIILSLCFSIR
                     IKLLSPFAPFISEEIWNNLGSRSSIISSKWPTVFNEKIDPLSEESDEFIKRLTLDISN
                     IIKVTKKLPRTIYIYCSSSGKQKIYQKILKIITLTNERNFGNIMKKLIQDPETSYAKK
                     DPSFVKKTVEDILSESVESRNNRLNWNSLDEISIIKDSENLISNEIEFENIRIIVYSE
                     EEKEKFDPKSKSRFSRPYKPAIYLE"
BASE COUNT         1024 a          458 c          392 g         1147 t
ORIGIN      
        1 ccctttgttc aattgctgat ttattcgtat tagctttatt gctcatctgt attgaattat
       61 tttaaatcca tttataactg tgactcaaaa ggaaaaagat aaaaatatta gaatttttca
      121 gaggatagct aaagagtaga aactttcatc aattcagcga tctttacctc cattccatat
      181 cgatcttgat tatttttcat atgatgatat attctaagta aatcaaaaga gttttttaca
      241 agattaaagg tacctgtaat tttcattaaa ataaacttga aaactaatgg atatatacta
      301 aaatgtttaa gaacttgttc tctatatttt ttaaaattat tcaaattatt tataaagaga
      361 tccgcacaaa ttgttgaagg gattatgcct tcaccaagta atggataaac tgtaccaatc
      421 gattctccaa ctcctataga ctttttacca tcgtaaaatg gttctgattt cgatggtgga
      481 ctaattctta caggtctccc atttttttta attatttcac atttgtattt ctttagaaag
      541 ttttcaacat aaagattgtg attttttctt gtaaaatcac cagcacctat atgtgcatat
      601 ccatttccta atggaaaata ccagaaatag ccagacattg aaggaaatcc tttaagataa
      661 aaatcatcat atggaatatt attattatca tatttgactt tatattgaac acaaggtatc
      721 cacatttcgt aatcaagttt agggagataa ttccggtgaa aaccagtaga atctataatt
      781 agatcaaagt cagcttctaa attttctttt tttggtgctt ttccatattt aatttccgtt
      841 ccttttatca tatcttgaat aagttttaat ttatcataac taaccatacc ttttaatccg
      901 atatcaatat gcttgctttc accaaggtct acgctcatat ttttaccatc atgtaagata
      961 tagttatcaa aatctaggct acattttttt gtatagttta ccataacatt tttgctggtt
     1021 gcccaagcgc aaactgcatc atgttcttct tctttcattc tttcaaatcc aactatatga
     1081 atatcatgat tattactaag ttgattcatt aaatatgctc ctgcaacccc aattcccacc
     1141 acagcaattt tcattgatac aatattacta tccaaaaata aaaatatatt gcgaaaaaat
     1201 tgaacaagta ccactagtga aaaagaaaaa agaaatgcca ggttctgcaa gggcaggtat
     1261 agctattttg gtattagggg cgatgcttct cggtgtagga tactatcaag atagaggagc
     1321 actttcttta tatggattaa taatgtcaat ctgtgggttt agcttgtata tgatttcatc
     1381 aatttatatt tcaagaaaaa ataataaagc aaaaggatct tattctaaat agatagcagg
     1441 tttataaggt cttgaaaatc tagactttga ttttggatca aatttttcct tttcttcttc
     1501 tgagtaaaca attattcgaa tattttcaaa ttcgatttca ttagatatta gattctctga
     1561 atcttttatt atagaaattt catctaatga gttccaattt aatctattat ttcttgattc
     1621 aacagattca gaaagaatat cttctacagt ttttttaaca aaagaaggat ccttttttgc
     1681 ataagaagtt tcaggatctt gtattaattt tttcattata tttccaaaat tcctttcatt
     1741 agttaaagta attattttaa gaattttctg ataaattttt tgtttaccag aagaagaaca
     1801 atagatatat atagtacgtg gtaatttttt cgttacttta ataatattag atatatctaa
     1861 cgttaatctt tttatgaatt catctgattc ctctgataat ggatcgatct tttcattgaa
     1921 aacagtgggc cattttgaag aaatgattga agatcgacta cctaaattat tccaaatttc
     1981 ttcagatata aatggagcaa atggagataa taattttatt ctaatagaaa aacaaagact
     2041 tagtattata ttcaccacat tatcattact tcgtttttta gccttaattc tttttttata
     2101 ccactgaata tgttgatcga aaacgtacag gatattatga agagcttcac gtatacgtaa
     2161 tgtttccatt gatcttgtaa cattatttat tagcctttgt aatttactta ttaaccatct
     2221 atcttctaat tccaaagaat atccattttg agatatatct aggtaaagta attcatctaa
     2281 tgataaattt ggatttgata ctttattgta aaaattagaa ttcaaaatct gttgtgaaag
     2341 agtgtagaat tctaataatt ttattctaat agatcttgca gtatcaaagg aaaaatctgc
     2401 atcctgaaga agctccgatg aaatcaatat tgctagtcta attgtatctg ctccatattc
     2461 ttgtattgct gttcttaaag gtattatatt tcctaacgat tttgacatct tttttccttc
     2521 cattaaaaca gaaccattga cgactatttg gtgtggccaa aacttctttt caaaaatagc
     2581 tatatgatta aaaagaaaga aagaaagatg attcggaacc aaatctcgtc cagaatgtcg
     2641 agaatcaacg ggataaaaat aaataaattc atttctaatt tcttgtatca acgatatgga
     2701 aagattacag ttttttgcta catcctgaac atttccaatt cctaatagta tatagtcaaa
     2761 aaaagactca tcaatattat ttagactttt tttcatcgag tatttttgtt cattaatgaa
     2821 ctttgatatt atataataag ccatgtaaat aactgaatca gataaacttt ctattatcca
     2881 ttcatgatcc catggaagtt ttgttccaag acctgatttt cttgcacaag ctctttcttt
     2941 taaccagtca actacattgt gaaattcttg tctaagatcc tcaggaataa tacttaattc
     3001 atctatgtaa ttatgtactt t
//
LOCUS       DATCMF010000391         2992 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_446856, whole genome shotgun sequence.
ACCESSION   DATCMF010000391 DATCMF010000000
VERSION     DATCMF010000391.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2992)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2992)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2992
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_446856"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..594
                     /locus_tag="VIL14_04995"
     CDS             <1..594
                     /locus_tag="VIL14_04995"
                     /inference="COORDINATES: protein motif:HMM:TIGR02928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division control protein Cdc6"
                     /protein_id="HEY8523098.1"
                     /translation="LSEEEIVFNPYKIHQLQKILSERVKLAFHDDVVTEGTINLCAAI
                     AGKDNGDARKAIDLLRVAAEIAEIDKDTKVYEKYIRLAQHKIEKDTNFEIIKNSTTHT
                     KIVLLAIAKSKNGNTGEVYEIYSSFCKHIDNESLTQRRITQIINELDQLGLISTNIVN
                     QGRYGRSQKIKITIPISTLKEALLDDHLLSTITTTID"
     gene            complement(584..2197)
                     /locus_tag="VIL14_05000"
     CDS             complement(584..2197)
                     /locus_tag="VIL14_05000"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:NF003118.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed DNA polymerase II small subunit"
                     /protein_id="HEY8523099.1"
                     /translation="MSFQKEISNALSYLTAHGYQIHPEAFKILKNLDSNIMEIIQKVV
                     RFKKNQNDTNIILIEDIRNFCTINIPNEVDISNELDNLTVSDSKLQDNNTIKTINEEI
                     QEFEIISRQEITINKPNYRESFKIIYDSTDYIDPEEGINGYISLFKSRFHQSLKILST
                     RPESKRINKISSIKRKIKQKNNNYLENNLSAVNGNTSIIAGLVMSKRSKKNNIELAID
                     DLTGIINTIALNEDTIKLVSKLTLDQMVMLEIENKGINYVIKNVVSPDIPDHIPNKGK
                     SDAYVVLISDLHIGSKYFKENEFLKFLNWLNSSDNEIVSKINFLCIGGDLIDGVGIFP
                     NQEKELNDSTIYQQMSHLTNLLEQIPKKIHVFVIPGNHDLGRRALPQPAIPKKDAGIL
                     YSWKNFTMLGNPSYIELNGVKILMYHGQGLDDIIATIPGLSYSNPAEAMKTLLKARHL
                     SPIYGQRTPIAPEKDDMMVITEIPDIFHSGHVHVMDVQNYRGTLIVNSGTWQDQTPFQ
                     QTMGIMPTAGIAIAVNLSTLRPFQIDFSQ"
     gene            2294..2809
                     /locus_tag="VIL14_05005"
     CDS             2294..2809
                     /locus_tag="VIL14_05005"
                     /inference="COORDINATES: protein motif:HMM:NF014052.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stage II sporulation protein M"
                     /protein_id="HEY8523100.1"
                     /translation="MKKRLYYLAVGMLVFLISYSIGAKINIEKEQSSLIKEQFETKIQ
                     GIDEVGIFQNNVLIALSMFIPGIGVGIGIFSGFGTGLVFNAMALENTALQNISPLAIL
                     ITPFGIMEIFSYGLAISRSGMLIYDLFKKKSWKLLLKPTIIEIVIVVSILIVAAFIEW
                     NIIKQIMEIPK"
BASE COUNT         1072 a          396 c          405 g         1119 t
ORIGIN      
        1 ttaagtgaag aagagattgt atttaatcca tataaaatcc atcaattaca aaagatatta
       61 tctgaacgag ttaagttagc ctttcatgat gatgttgtca ccgaaggaac aataaattta
      121 tgtgcagcaa ttgcaggaaa agataatggt gacgctagaa aagcaattga tttgcttcgc
      181 gtagcagctg aaatagctga aatagataag gatacaaaag tatatgaaaa atatattcgt
      241 ctagcacaac ataaaataga aaaagatacc aattttgaaa taattaaaaa ttctactact
      301 cataccaaaa ttgttttact ggcaatagca aaatcaaaaa acggaaatac tggggaagtt
      361 tatgaaattt attcctcatt ttgtaaacat atagataatg aatcacttac acaacgtaga
      421 ataactcaaa ttataaatga acttgatcaa ctcggtttaa tttcaactaa tattgttaat
      481 caaggtagat atggtcgttc tcaaaaaatc aagattacta ttcccatatc tacacttaaa
      541 gaagccttat tggatgatca tctactatct acaataacaa caactattga ctaaaatcaa
      601 tttgaaatgg acgtaatgtg gaaagattaa cagctattgc gattcctgct gtaggcatta
      661 ttcccatagt ttgttgaaat ggagtttgat cttgccatgt tccagaattt acaatcaatg
      721 ttccacgata attttgtaca tccattacat gtacgtgtcc agaatgaaat atatccggaa
      781 tttcagtaat taccatcata tcgtcttttt ctggagctat tggtgtcctt tgaccgtata
      841 tgggagataa atgtcttgct tttagtaatg ttttcattgc ttcagcagga ttagagtaac
      901 ttaatcctgg tatggtagca ataatatcat caagtccttg accatgatac ataagaattt
      961 taacaccatt taactcaata tagctaggat tacctaacat agtaaaattt ttccaactgt
     1021 ataatattcc tgcatccttt ttaggtatag caggttgagg taaagctctt cttccaagat
     1081 cgtgatttcc tggaataaca aatacatgaa tcttttttgg aatctgttct aatagattag
     1141 ttaaatgaga catttgttga tatatggtac tatcatttag ttctttttct tgatttggaa
     1201 atattccaac tccatcaatt aaatctcctc ctatacagag aaagtttatt tttgaaacaa
     1261 tttcattatc tgatgaattt aaccaattta agaattttaa aaattcattt tctttaaaat
     1321 atttactacc tatatgtaaa tcagaaatta gaaccacata tgcatctgat tttcccttat
     1381 taggtatatg atcaggaata tcaggagaaa caacattttt aataacataa tttattcctt
     1441 tattttcaat ttctagcatt accatttgat ccaatgttaa ttttgataca agttttattg
     1501 tgtcttcatt taaagcgatt gtatttatta tgcctgttaa atcgtctata gctaattcaa
     1561 tattattttt tttagatcgt ttagacatta caagaccagc aattatggaa gtatttccat
     1621 ttaccgccga aagattattt tctaaataat tattattttt ttgtttaatt tttcttttta
     1681 tggaagatat tttattgata cgtttacttt ctggtcttgt agataaaatt tttaaagact
     1741 gatgaaatcg acttttaaat aaagaaatat agccattaat tccttcctct gggtcaatat
     1801 aatcggtaga atcgtaaata attttaaatg attccctgta atttggttta ttaattgtaa
     1861 tttcttgtct agatataatt tcgaattctt gaatttcttc atttattgtt tttatagtat
     1921 tattatcttg taactttgaa tctgaaacag ttaaattatc aagttcattt gaaatatcaa
     1981 cttcattagg aatatttatt gtacaaaaat ttcgaatatc ttctataaga ataatattag
     2041 tgtcattttg gtttttctta aatctaacaa ccttctgaat tatttccatt atatttgaat
     2101 caaggttttt taaaatttta aatgcttcag gatgtatttg atatccgtgt gcagtaagat
     2161 aagacaatgc atttgatatc tctttctgaa aggacaacta caaactatta cgatagaatc
     2221 atcttattta attacattgc tattataagt tcaatacaaa aatattataa agttaaataa
     2281 tatactcata aaattgaaga aacgtcttta ttatttagct gttggtatgt tagtttttct
     2341 tatttcttat agtattggtg ctaaaataaa tattgaaaag gagcaatcat cattaataaa
     2401 agaacaattt gaaacaaaaa ttcaaggaat agatgaagtt ggcatttttc agaataatgt
     2461 tctaattgcc ttatctatgt ttattccagg tattggtgta ggaattggta tattttctgg
     2521 ctttggtaca ggattagttt ttaatgcaat ggctttagaa aatacagcat tgcaaaatat
     2581 ttctccacta gcaattctta ttactccatt tggtataatg gaaatttttt cttatggtct
     2641 tgcaatctca agaagcggaa tgcttatcta tgatcttttt aaaaaaaaat cttggaaatt
     2701 acttcttaaa cccactataa tagaaattgt aatagtagta tcaattttaa tagttgcagc
     2761 attcattgaa tggaatatta taaaacaaat tatggaaatt cctaaataat ttattattat
     2821 ttttataata tataaataaa aagtaatatg ataaaagatt taaggatatc caatagactg
     2881 acttgatatt attaagatca caaaaagcat atttataaat tcaaaataaa attaatataa
     2941 tataaataga attgttagga gtaaaaattc attataaacc aaaatttgac aa
//
LOCUS       DATCMF010000392         2503 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_514845, whole genome shotgun sequence.
ACCESSION   DATCMF010000392 DATCMF010000000
VERSION     DATCMF010000392.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2503)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2503)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2503
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_514845"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            53..532
                     /locus_tag="VIL14_05010"
     CDS             53..532
                     /locus_tag="VIL14_05010"
                     /inference="COORDINATES: protein motif:HMM:NF014678.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF192 domain-containing protein"
                     /protein_id="HEY8523101.1"
                     /translation="MAVLIPAALVTFFIGIASLIFVPDEIKNKPLDFDRGTIKIGDSV
                     INVEIAESDAERQRWLMFRNEEFTLNSAMILVYPKSDLYALWLLNIQYNLDILWFNEK
                     GKLVYYIEDAKPCENPLDPQNCTFKTTIPAKYIVVSTEGFIKGNTITNSSILTIISI"
     gene            626..919
                     /locus_tag="VIL14_05015"
     CDS             626..919
                     /locus_tag="VIL14_05015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HEY8523102.1"
                     /translation="MPVAILPDISEQHCIGCALCVEICTALGPDVLRVKPVEGWKRGK
                     AFVFYPERCISDGACIGVCPTKAIFWMRPMDYTPGQPIPLKKSALFSKGWEEG"
     gene            1019..>2503
                     /locus_tag="VIL14_05020"
     CDS             1019..>2503
                     /locus_tag="VIL14_05020"
                     /EC_number="2.1.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_function: GO:0050797 - thymidylate synthase (FAD)
                     activity [Evidence IEA];
                     GO_process: GO:0006231 - dTMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent thymidylate synthase"
                     /protein_id="HEY8523103.1"
                     /translation="MQSFTEEPFSEKEREILLSHFTNSDKPIFAIITPKQVDRGALMS
                     RYSRSDKSMRRIFLEEFANNPNRGDEFYKRVLLEYGDDSVAELGEAQVAIEYVSNIAA
                     KKIEDQRIGLSYLEKSSRYVSFDKKNNGQYKYLKEKKIMNSKYADIYIEACDYAFDLY
                     SKNIEAMQRFIIEREPIDNFQFYDSISKKDVKFNNLKESNDIKSAQKIYKSTIKAKSL
                     DLLRGLLPASTLTNLGITGNGRAFEYLLTRLYASNITEMNALADQLYEELNLIIPSFV
                     YRAKNQHGMSMQNYLRNTNDVILKMAKEHLSHIKINPNLECVNLIFNEDNTEAEVKIA
                     SSILFEQAAGHTLTKIIEYVRSLPIEDRHKIIKTYTSLRTNRRQRPGRAYEMTEYTFE
                     MLTNFGMFRDLHRHRILTLERQLLSTRHGYDVPKEISDLGILDDFKDCMYKCNEVFQI
                     LVNDDYPEEAQYVVNFAYKYPFFMKLNLREATHMIELRTLSQGHP"
BASE COUNT          943 a          338 c          415 g          807 t
ORIGIN      
        1 aaagtaaaat tcaaatcaca gatttcattt attacttaag ttggttcgca agatggctgt
       61 cttaattcca gctgctcttg tcactttttt tattgggata gcaagtctaa tttttgtccc
      121 ggatgaaatt aaaaataaac cattggattt tgacagagga acgatcaaga taggtgattc
      181 agtaataaat gtagaaatag cagaatcaga tgctgaaaga caaagatggc taatgttcag
      241 aaatgaggaa tttacactaa actctgctat gattttagtt tacccaaaat ctgatctata
      301 tgcattatgg ctattaaata ttcaatataa ccttgatatt ttgtggttca atgaaaaagg
      361 aaaactagtt tattatatag aagatgctaa accctgtgag aatccattag atcctcagaa
      421 ttgtaccttt aaaacaacta tacctgcaaa atatattgta gtatccacag aaggatttat
      481 caaagggaat actattacca attcatcaat tttaactata atatcaatct aatccaagat
      541 ttattaggtt taatatatcg gtgttataaa tttgacatag ggtttaaata gtttcagaaa
      601 gaatcggaaa ctagtgaatt aaaaaatgcc agttgcaata cttccagata ttagtgaaca
      661 acattgtatt gggtgtgcac tttgtgtaga aatttgtact gctcttggtc cagatgtcct
      721 cagagtaaag ccagttgaag ggtggaaaag aggtaaagcc tttgtatttt atccagaaag
      781 atgtatctct gatggtgcat gtattggtgt ctgtccaaca aaggcaattt tctggatgag
      841 accaatggat tatacaccag gacaaccaat tccattaaag aaaagcgcat tattttcaaa
      901 aggttgggaa gaaggttaga atcaaccaaa ctctattatt ttattttttt ttagtattat
      961 aaatattagt tattttaatt atataaatat agaataatat tattatctct tattgataat
     1021 gcagtccttc actgaagaac cattttctga aaaagaaaga gagatacttt tgtcgcattt
     1081 tactaatagt gataaaccaa tttttgcaat aattactccg aaacaagttg atcggggggc
     1141 actaatgtca agatattcac gatccgacaa aagtatgcgt agaatatttt tagaagaatt
     1201 tgcaaataat cctaatcgtg gagatgaatt ttataaaaga gtattattag aatatggtga
     1261 tgattctgtt gcagaattag gagaagcaca ggtagcaata gaatatgtat ccaatatcgc
     1321 agctaaaaaa atagaagatc aaagaatagg tttatcttat ctagaaaaat catcaagata
     1381 cgtttcattc gataagaaaa ataatggtca gtataaatat ttaaaagaaa aaaaaataat
     1441 gaattctaag tatgcagata tatatatcga agcatgtgac tatgcttttg acctttattc
     1501 taagaacata gaagctatgc aaagattcat tatagaaaga gaacctatag ataactttca
     1561 attttatgat tctatttcta aaaaagatgt aaaatttaat aacttaaaag aatccaatga
     1621 tataaaatca gctcaaaaaa tatataagag tactataaaa gctaaatcat tagatctttt
     1681 acgggggctt ttacccgcgt ctactcttac taatttaggt attactggta atgggagagc
     1741 ttttgaatat cttttaacaa gattgtatgc atcgaatata acagagatga atgccttagc
     1801 tgatcaattg tatgaagagc ttaatctaat tattccgtct tttgtttata gggcaaaaaa
     1861 tcagcatgga atgtctatgc aaaattattt aagaaataca aatgatgtta ttctcaaaat
     1921 ggctaaagaa catctttcac acatcaaaat caacccaaat ctagaatgtg tgaatttaat
     1981 atttaatgaa gataatactg aagcagaagt aaaaattgca tcatctattt tatttgaaca
     2041 agcagcagga catacactta caaagattat agaatatgtt cgatctttac caatagaaga
     2101 tagacacaaa ataattaaga catatacaag tttacgaacc aatagaagac aacgtccagg
     2161 tagagcttat gaaatgactg aatatacatt tgaaatgctt actaattttg gaatgttccg
     2221 tgatctacat cgacatagaa tattaactct ggaaagacaa ttactttcta ctagacatgg
     2281 atatgatgtg cctaaggaaa tttctgatct tggaattttg gatgatttca aagattgtat
     2341 gtataaatgt aatgaagtat ttcaaatcct tgtcaatgac gattatccag aagaagcgca
     2401 atatgtagtc aattttgcat ataaatatcc attttttatg aaattgaatt tacgagaagc
     2461 tacgcatatg attgaattga gaactttatc acagggacat cct
//
LOCUS       DATCMF010000393         1943 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_381927, whole genome shotgun sequence.
ACCESSION   DATCMF010000393 DATCMF010000000
VERSION     DATCMF010000393.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1943)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1943)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1943
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_381927"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            82..975
                     /locus_tag="VIL14_05025"
     CDS             82..975
                     /locus_tag="VIL14_05025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prenyltransferase"
                     /protein_id="HEY8523104.1"
                     /translation="MIVSVWLRIIRIKFLLASIIAITNGLLYTYLSYNYFNVIDALLT
                     YIGIIFLHASVDIFNDYWDYKRGIDTTTKRTSFSGGTGVLPEKKLDPTIVYKAGLVCL
                     GIGLSIGGYFVLHSGLIIAVILAVATLSIYFYSTTIVNIGLGETLVAVKGAMIVIGTC
                     YVQAGMVDLSIVLLGIISGTLSSIVLYIASFPDFDADKEKGRKTLIILLGKDKGFKIF
                     PFLIGFIYSLITIGIIVQFLPIYTIITFSSLPFAIQSVKLLKNYHKLEDLVKAISNTI
                     RFSRILGICLIISYLIAIINK"
     gene            1055..1267
                     /locus_tag="VIL14_05030"
     CDS             1055..1267
                     /locus_tag="VIL14_05030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523105.1"
                     /translation="MYDSCYCFTVFNEKSDGLREIPHLLHLPLERRILSFIDFRFIIL
                     LIVLPQLPHTTSKQGYDIIHINSIVE"
     gene            1698..1811
                     /locus_tag="VIL14_05035"
     CDS             1698..1811
                     /locus_tag="VIL14_05035"
                     /inference="COORDINATES: protein motif:HMM:NF019990.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YHS domain-containing protein"
                     /protein_id="HEY8523106.1"
                     /translation="MDEGLAISFEYDNKKYYFCCEGCKGIFKRKPKKYNHN"
BASE COUNT          712 a          241 c          284 g          706 t
ORIGIN      
        1 atgtaattcc tgctcgagct taagacgatt cttagaataa aaatataaac aattaattga
       61 aaattaatgt aagtttttag gttgatagtt tcagtctggc ttagaataat aagaattaaa
      121 tttcttttgg cttcaattat agctattact aatgggttat tatatactta cctcagttac
      181 aattatttca atgtaattga tgcactattg acctatatag gaataatttt tttacatgcc
      241 agcgttgata tttttaatga ctactgggat tataaaagag gaattgatac cactactaag
      301 aggactagct ttagtggagg aacaggagta ttacctgaaa aaaaactcga tccaactata
      361 gtatacaaag caggattagt ttgtctgggg ataggattat ctataggagg ctactttgtt
      421 ctgcacagtg gtttaataat tgcggttatt ttagcagtcg ctactctatc aatttatttt
      481 tattctacta ctattgtaaa tattgggtta ggagaaaccc ttgttgcagt caaaggtgca
      541 atgattgtga ttggtacgtg ttacgtgcag gctggtatgg tagacttgtc aattgttctt
      601 ctaggaataa taagcggaac attatcttct attgttttat atatcgcatc ctttcccgat
      661 tttgacgcgg ataaagaaaa aggaagaaaa accttaatta ttttattagg aaaagataaa
      721 ggattcaaaa tatttccatt tcttattgga tttatatatt ctttaataac tattggaatc
      781 atagtacagt ttttaccaat ctacacaatt attactttta gttccttacc ttttgctatc
      841 caatctgtaa aattactgaa aaattatcac aaacttgaag atttggttaa agcaatttct
      901 aatacaatta gattctcaag aatattaggt atttgtctta taataagtta cttaattgca
      961 ataatcaata aataatagac ttatatgttc taacaaaaag taatatataa aaaagagatt
     1021 tttgaaattt ctctaataaa ataaattaat tagtttgtat gattcatgtt attgttttac
     1081 agtattcaac gaaaaatctg atggattaag agaaattcca cacttattgc accttccact
     1141 agaaaggcga atactatctt ttattgattt taggtttatc attctattaa ttgtgcttcc
     1201 gcaattacca catacaactt ctaaacaagg atacgacatt attcatatca attcaatagt
     1261 agaataatat atttcttgta aaaggttatt aaccatttgc acaaaataaa tgttttagta
     1321 gagtaagaat atgttaactc aaaatacgga aaaagtaagt aggattataa attttttctt
     1381 cattcaattt aacattttac atgttcttag cttcaaaaaa gataatattc tctttaatgt
     1441 taaaaagaag attctctaat taaatctaga aaactttaaa tttttcatat aataaacttt
     1501 tcaaatttca tttataactt tcttacagta acataagctt tgacaatact tattatagag
     1561 aatattggat taggaaacaa tagaatttta atattataga attgcgaaaa cctcgtggat
     1621 atacatcgaa atatataaat aattagaaaa aataattgtg ttcaaatatg ccagttgatc
     1681 ctgtttgtgg aatagaaatg gatgaaggat tagcaatttc ttttgagtat gataacaaaa
     1741 aatattattt ttgttgtgaa ggatgtaaag gtatttttaa aagaaagcca aaaaaataca
     1801 accataatta atatacttta tattcttact ataaataata tttctgtgaa atctgtaaaa
     1861 atcgtatctc aaggagtgat tcaagtttac gagcaagacg ataccatgct gaactttaaa
     1921 tcagaagggg atattcttgt aaa
//
LOCUS       DATCMF010000394         1533 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_514921, whole genome shotgun sequence.
ACCESSION   DATCMF010000394 DATCMF010000000
VERSION     DATCMF010000394.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1533)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1533)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1533
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_514921"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..271)
                     /locus_tag="VIL14_05040"
     CDS             complement(<1..271)
                     /locus_tag="VIL14_05040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523107.1"
                     /translation="MKTPRYICSKCRQPFTRRWNAYRHSNNKHFGSIENIISFTEYTS
                     NRPDSSIPLNGFYEDKNSNHHPTNVKNQLFCDKPISFNNNLFDTLL"
     gene            complement(781..1215)
                     /locus_tag="VIL14_05045"
     CDS             complement(781..1215)
                     /locus_tag="VIL14_05045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523108.1"
                     /translation="MAKQQLLNQESPVSEVLNRYKKELTKNIERQIRVPTFSIISEES
                     KQEASISQIIRTYGKHFTQVRKRYTDGLGGRCVMGLIMSYYGWDGKCITNAERKLYAA
                     LVALRRAGISKELLIELNDSGATFDDIADYLDKNCGLARNNR"
BASE COUNT          486 a          251 c          254 g          542 t
ORIGIN      
        1 ctaataatgt atcgaaaaga ttgttattga aggaaatggg tttatcacaa aataattggt
       61 tttttacatt tgttggatga tgattactat tcttatcttc ataaaagccg tttaaaggaa
      121 tagaagaatc tggtcggtta ctggtatact cggtaaaaga gataatgttt tctattgaac
      181 caaaatgttt attgttggaa tgacgatatg cattccatct tcttgtaaaa ggctgtctac
      241 atttagagca gatgtatcta ggtgttttca ttgctgtcta tatattgacc ataaaaaaat
      301 tagtttaata actttgctaa agagtaactc agagttactc tctttgagcg atgtataaat
      361 aatttttatt attctgtaga atgcgaaatg taaaaatttt aaaaaattct tgatataaaa
      421 ttaatttaac aaagagatgg tattaaaaga taaagaaata ttcataatta acggactaga
      481 aggccttaac ttgtaaagat aaatgcctct tagacaggtc ctgtacattt gagagcaacc
      541 accttcatat atctacttat tttgctagca aatcctctct ttcaagaaag taaacttaac
      601 gaaaatttcg ctatgcaaga atggactggg ggggatttgc acggtcgatt agacagacta
      661 ttgattctgt cattgtatgt tgtaatcgaa gatatattta gctttttcta gaatttggat
      721 ttgatggaat cgtctgaaaa ttcacactca tccaagaccg cctttggatg agttcgacga
      781 ttacctgttg ttccttgcca atccacaatt tttgtccagg taatcagcta tatcgtcgaa
      841 tgtcgcacca gaatcattca actctatcag taattcttta cttataccgg ctcgtcgcaa
      901 tgcgactaat gcagcatata attttctttc agcattagtg atacatttgc catcccaccc
      961 ataataagac atgatgagac ccataacaca tcttccgcca agtccgtcgg tatatcgctt
     1021 tctaacctgt gtaaaatgtt ttccatacgt ccgtattatt tgagaaatgg atgcttcttg
     1081 ttttgactct tcactaataa tactaaaagt tggaacgcgg atttgtcgct ctatgttctt
     1141 tgttaattcc tttttatatc tatttagaac ttccgaaaca ggtgattctt gatttaatag
     1201 ttgttgctta gccatatttc caataaataa tcacaaacaa actatttaga agctatgcgt
     1261 attgggtttc tactgaaagg gtatttggtc gtactttaga cgttgtggag aaactatatt
     1321 tcggtggaat gctttagaaa tttcaataca attctagttg ttatttaatt tcaaatagag
     1381 aaactcattt tacatagctt ttcttgtttg ttcatgtgaa gtagcatttg ctaccttgaa
     1441 agaatttaat aaacataatc aatacttcac aataagatca ttagtagtaa tcagaaagtc
     1501 aaagccctca actacttctg cttctaaacc ttc
//
LOCUS       DATCMF010000395         2211 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_314820, whole genome shotgun sequence.
ACCESSION   DATCMF010000395 DATCMF010000000
VERSION     DATCMF010000395.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2211)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2211)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2211
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_314820"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(175..1350)
                     /locus_tag="VIL14_05050"
     CDS             complement(175..1350)
                     /locus_tag="VIL14_05050"
                     /inference="COORDINATES: protein motif:HMM:NF013862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HEY8523109.1"
                     /translation="MASNEIENVLILQGGGSLGAFACGVFKALVKNDIKIDIVAGTSI
                     GGANASIIASSKEDNPEDALEQFWLELAEGDINSNSYPFMNWSLYGLTNSLTSVADYT
                     KNIHGSEIKSISSFYKSAFFGNKKVFIPRWNPQYALSDPEYFNPNKWTYLYDHSPLIK
                     TLEKYVDFNKLKPNGNPNSRLIITAVNVLTAEPLAFDSSKQQITPKHLLAATAYPKYY
                     FQWVEVEEGVYAWDGSLLSNTPLREVIDASPIKNKRIFLVENYPKNIDNLPANLFEVE
                     HRTRDILFSDKTMHNIKMSKAFTVYLKLINDLYNMLENNFNSQNKEDIRNLERIRKRY
                     KRISENHGAEIKKTYYITREEKDSNLYENAEFSVEVIKNSIKDGELQTNKVINQMYK"
     gene            complement(1849..>2211)
                     /locus_tag="VIL14_05055"
     CDS             complement(1849..>2211)
                     /locus_tag="VIL14_05055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523110.1"
                     /translation="NLKIQSEQQIYSKIMEARLKLENTEEFTKMASESSVFIERFDLV
                     DSPSEYYSIVSFLDLFEYVFHLNKMQMLDETVWKRWEALTETIMTIPKFRSIWIKTKE
                     SHPDKEFGEFINSLLVQK"
BASE COUNT          744 a          336 c          282 g          849 t
ORIGIN      
        1 agaaatttat ttttgattca atgaaatatt aaatgaatat ataaactgta aaagattatc
       61 ttttcatatc gttattgaga tttagacaaa ttacaatatt tagctatgtc tataataata
      121 tataaaatta ataaatataa ataattggac aacaacatga tacttttgtc attattattt
      181 atacatttga ttaattactt tattcgtttg tagttctcca tcttttattg aattctttat
      241 gacctctact gaaaattcag cattttcata aagattagaa tctttttctt ctcttgttat
      301 ataatacgtt ttcttaattt ctgcaccatg gttttctgat attcttttat atcttttacg
      361 aattctttca agattcctta tatcttcttt gttttgcgaa ttaaaattat tttcaagcat
      421 attataaaga tcatttatta gcttcaaata aactgtaaaa gcttttgaca tttttatatt
      481 atgcattgtt ttgtcactaa acaaaatgtc acgtgttcta tgttctacct caaataaatt
      541 ggcaggtaaa ttatcaatat tttttggata attttcaact agaaagatcc gtttattctt
      601 tattggagaa gcatcaatga cttctcttaa gggggtatta ctaagcaaac tgccatccca
      661 tgcatacacc ccttcctcta cttctaccca ttgaaaatag tatttaggat aagcagttgc
      721 agcaagtaga tgttttggag ttatttgttg cttagaacta tcaaatgcta atggttctgc
      781 tgtcaagaca tttactgcag ttattattaa acggctatta ggattaccat tgggttttag
      841 tttgttaaaa tcaacatatt tttctaatgt ttttatcagt ggagaatgat catatagata
      901 tgtccattta ttaggattaa aatattctgg atcgcttaaa gcatactgag gattccagcg
      961 tgggataaag acctttttat ttccaaaaaa tgctgattta taaaatgatg atatagattt
     1021 aatctctgaa ccatgaatat tttttgtata atctgctact gaagttaatg aatttgttaa
     1081 tccatataat gaccaattca taaaaggata cgaattagag tttatatcac cttctgctaa
     1141 ttctaaccag aattgttcta atgcatcctc cggattatct tctttactgc tagctattat
     1201 tgaagcattt gctccgccaa ttgatgtacc agcaactata tctattttta tatcattctt
     1261 gacaagtgct ttaaaaacac cgcatgcgaa agcacctaaa gaaccaccac cctgaagtat
     1321 tagaacattt tcaatctcat ttgatgccat aataaaaata atattcgtta taataattta
     1381 tagataattg aatatgcact ttatataacc acgtttattg caacaaatgt agagactaat
     1441 aagacatttc atactagaaa agtccctgaa ttcatgtgaa aggtgttgtt agaaggtgga
     1501 ttagttgaat actacaaaaa tataaaaatt tccatggatc caaagttaaa acttttacat
     1561 tcttgatggc gttacctatc gattctatat ttgtcgattt gaatattaat catctttgaa
     1621 taatatggta atagatctcc attttaaaat tttgaaattg atataagttg atacccaaaa
     1681 ttatcaatag aaaaatcaac gccttatcta ctatagagaa atagaaagaa aaatgtgtaa
     1741 ttatattcta tattatgaaa tagacaaata atgtacacat atataatcat cttgaacaaa
     1801 tagaaatttt ttaaattaac acagccatct attatttttt tgatttctct atttttgaac
     1861 taataatgaa ttaataaact ctccaaactc cttatctgga tgtgattcct ttgtcttgat
     1921 ccaaatgctt ctaaacttcg gtattgtcat tattgtttca gtaagagcct cccaacgttt
     1981 ccatactgtc tcatctaaca tttgcatctt gttaaggtgg aatacatatt caaacaagtc
     2041 aagaaatgat actatactat aatattctga tggactatcg acgagatcaa atcgttctat
     2101 aaatacagaa ctttcacttg ccatttttgt aaactcttct gtattttcca gtttaagtct
     2161 agcttccatt atcttggaat aaatctgctg ttcactttgt atttttaaat t
//
LOCUS       DATCMF010000396         1515 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_117323, whole genome shotgun sequence.
ACCESSION   DATCMF010000396 DATCMF010000000
VERSION     DATCMF010000396.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1515)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1515)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1515
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_117323"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(347..1249)
                     /locus_tag="VIL14_05060"
     CDS             complement(347..1249)
                     /locus_tag="VIL14_05060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523111.1"
                     /translation="MTSAPVTSEQVYQILSDRTSVKMLKTAYSGLKFSSNDLGGNLSK
                     KRFYTKLKRLCRAGLVEKNRNSVYKTTTFGSLVYNGQVKMLDESLASYWPLKTIDVLK
                     ARQDFPPEQSESIINQVIQGCNLKNYVNSTHLSGFSIVKDFNSLVVEVIKLLYNAEKE
                     IFFASRYHDPHASSKMIEKFNQGLTLHILDGNPEPISIENRINAILRTPPNNETLQLV
                     KRMIRSPRFEIRKAAVPASFLVVDGHQVIYESINFNSPEQFTIAIANYDDAYLGQQFI
                     KYFQLLSKESKSVQFCESIKTSSG"
BASE COUNT          453 a          284 c          267 g          511 t
ORIGIN      
        1 agtccattct caatcaagct aagggagtta taaacaactt cgcccaaggc agttagggaa
       61 tatctgccat ttaccttatt taccaaatct gctccgacca acttcgacat tcttgaatag
      121 tattgctttc gtgtgagttt ggtcttcatc ttgagctctt cactgttccc attttctgcg
      181 gctatcgttc taaaaataat tagagcgtct ttgggagaaa tacaatctag aacttgttct
      241 aatgatacca actaacattt atctccatat tatatttcga tatgaacctt tagtgtctcg
      301 ggatggagaa tttcccttgt atatatctga taagagatac aatatattat ccgctacttg
      361 ttttaatact ttcacagaat tgaactgact tagattcttt tgatagtaat tgaaagtatt
      421 ttataaattg ctgtcccaaa taagcgtcat cataattagc aatcgcaatt gtaaattgtt
      481 ctgggctgtt aaagtttatg gattcataaa ttacttggtg accatcgacc accaagaaac
      541 tagctggtac ggcagctttt cttatttcaa aacgtggaga ccttatcatc cttttgacta
      601 actgcaaagt ctcgttatta ggtggggttc tcaaaattgc gttaattcta ttttcaatgc
      661 ttataggttc tggattcccg tctaaaatat gcaaagtaag accctggtta aacttttcaa
      721 tcatcttcga tgaagcatgg gggtcatgat atcgtgaagc aaagaaaatt tctttttctg
      781 cattatataa aagtttgatt acctctacaa caagactgtt gaaatccttt acaatactaa
      841 aacctgataa atgagtggaa tttacgtaat tctttaaatt gcagccttga atgacttgat
      901 ttatgataga ttcactttgc tcgggtggaa aatcttgtct cgcctttaag acatcaatag
      961 tcttcaatgg ccagtaacta gccaatgatt catcaagcat tttgacctgt ccgttataca
     1021 ccaaggaacc aaacgtagtt gtcttgtata cagagttcct atttttttcc actaggccag
     1081 ctctgcagag acgtttgagc ttggtataga aacgtttctt gctcaaattg cctcctaggt
     1141 cgttcgagga aaacttaagg cccgaataag ctgtcttaag cattttaaca gatgttcgat
     1201 cagacaaaat ctggtaaact tgctcagaag tcactggggc agaagtcatt tagatagcaa
     1261 ctgaaacaac aagatccacg gctatttaaa agttcccaat tttggaaact tttttacgaa
     1321 agtttgtcac aacagtagtt ttttagcggt ttattcggtt gtgtactgat agtcatttta
     1381 gttctgttta ggaatagttg ttcattcctt gtttaattct tccaacgatt taccaagagt
     1441 acgagatcca tatagcaaca ccaaaatcgt tgctacaaaa gcaaacgatg ccattgttac
     1501 catagtatag aggaa
//
LOCUS       DATCMF010000397         1977 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_117387, whole genome shotgun sequence.
ACCESSION   DATCMF010000397 DATCMF010000000
VERSION     DATCMF010000397.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1977)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1977)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1977
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_117387"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(545..670)
                     /locus_tag="VIL14_05065"
     CDS             complement(545..670)
                     /locus_tag="VIL14_05065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523112.1"
                     /translation="MCFTNEIPEKEEVLKPKKLEKEKQQENKSQHEEKPIMVNAA"
     gene            complement(894..>1977)
                     /locus_tag="VIL14_05070"
     CDS             complement(894..>1977)
                     /locus_tag="VIL14_05070"
                     /inference="COORDINATES: protein motif:HMM:NF012348.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glutamine synthetase"
                     /protein_id="HEY8523113.1"
                     /translation="LTTSSVEEAVEGNPLKKNLQSVDGNQDPTNVSIFSSEQVGNGKY
                     PIRPKSGYDITPFQDSLIDFRFEIARILKKYYSIEVTNLNHEVASNGQIEINFMHDIL
                     TKTADNVQLYKDVVRNVAKKYNKIANFMPKPIFDESDPAKGDNGSGMHVSVSFWKKST
                     STTNNSNIFYDSDDAYSELSQIGRYFIGGLLDHAPSLSSLVTPTVNSYYRIIPGFEAP
                     VYVAWARGNRSAVVRIPVNAKGNDSSKRIEFRAPDPSANSYLAFSAIVAAGLDGIKNK
                     IDPGNPINENIYKMSDHKRKSFGINMLPSSLYEALMFLKSDSKYLNLCFERQLIEVYI
                     TLKLQEIAEIGTDKSKLKQFLYYYDI"
BASE COUNT          606 a          313 c          287 g          771 t
ORIGIN      
        1 aagatccaat aagttgatcc tttcttactg attgtttatt atatccaaat acgggtttta
       61 ttcttaattt tagctagtct gtatcttcag attccacaat ttctatcacg atgtgctgca
      121 gtatctgtct cgcacacttt ctcgttacat ggctaatggc gaagagaaat agtcttcctc
      181 tatccatacc tcataaactc cttctttgtc atcttttttg cattttttaa gcatagtgtt
      241 aattttcaca gaagtttttt tattctgtca cactacttct tgacacagtt ccaaatgttt
      301 agttttaact gtagctttta caagataaat gtcataataa ttctatatta acgtcaattt
      361 aattagtata ggctcaattt atttaattta ggtagcataa atagaggaca tagtatatca
      421 tttgagggta ttatttaaat gcagataaat tctgctatca tcaactagtt tttgcaatgc
      481 attaagttta tttctaataa tcaacttatt tttgttaaaa aagaaaagaa taaattaaga
      541 ttttttatgc agcatttacc ataattggtt tttcttcgtg ctgagattta ttttcttgtt
      601 gcttttcttt ttccagtttt ttaggcttga gtacttcttc tttttcaggt atttcattcg
      661 taaagcacat agtactaaat ataggatttc atttattata agtattccag ttaaatcctc
      721 tattcaaagg tatatcttta tactagagtg gtaaatgttg agcttgaggt tgctaaaagt
      781 tcaatttaat tattaaatat atgaaaatag ttgaatttat tgtaaaaaag ttaagttgta
      841 ccttactctc atagctaatc attataataa ttatttttct aatataggtg attttaaata
      901 tcataataat atagaaattg ttttaatttt gatttatcag tacctatttc cgctatttct
      961 tgtaatttta aagtaatata tacttctatt agttgtcttt caaaacatag attcaaatat
     1021 ttagaatcgc ttttcaggaa cattaaagct tcataaagac tggatggaag catgtttatt
     1081 ccaaaacttt tacgtttatg atctgacatt ttgtatatat tttcattaat aggattgcca
     1141 ggatcaattt tgttcttaat tccatccaat ccagcagcaa ctattgctga aaatgcaaga
     1201 tatgaattcg ctgaaggatc gggagctcta aattcgattc tctttgatga atcattacct
     1261 ttagcattta ctggtattcg caccaccgca gatctattac ctctagccca tgctacatat
     1321 actggcgctt cgaatccggg gataatccta taataggaat taactgttgg tgtaactaag
     1381 gatgaaagag agggagcatg gtcaagcaag cctcctataa aatatctacc tatttgactt
     1441 aattcagaat aagcatcatc tgaatcatag aaaatatttg aattgtttgt tgtggaagta
     1501 gattttttcc aaaagctcac actaacatgc ataccggaac cattatctcc tttagccgga
     1561 tcactctcat cgaagatagg tttgggcata aagtttgcaa tcttgttgta tttttttgcc
     1621 acatttctca caacatcttt gtataactgt acattatcag cagtttttgt aagaatatca
     1681 tgcataaaat ttatttcgat ttgaccatta ctcgctactt catgatttaa attagttacc
     1741 tctatagagt aatatttttt taatattctt gctatttcaa atctaaaatc tattaatgaa
     1801 tcctgaaaag gggttatatc ataaccagat tttggacgta taggatattt tccgtttccg
     1861 acttgttcgg atgagaagat agaaacatta gttggatcct gatttccatc tacactttgc
     1921 agattttttt ttaatggatt accttccaca gcctcctcaa cagaagatgt tgttagg
//
LOCUS       DATCMF010000398         2326 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_382463, whole genome shotgun sequence.
ACCESSION   DATCMF010000398 DATCMF010000000
VERSION     DATCMF010000398.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2326)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2326)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2326
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_382463"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            85..765
                     /locus_tag="VIL14_05075"
     CDS             85..765
                     /locus_tag="VIL14_05075"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: protein motif:HMM:NF013366.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit D"
                     /protein_id="HEY8523114.1"
                     /translation="MDKKLELLLDLSINILEKTDEKIILKVNNIPRQYLNAVRRIAIS
                     EVPTLAIDDVVILENSSVMHDEAIAHRLGLIPLRTELNRFVFSNQCDCNNTLGCSKCR
                     ILLILDAESSEKTRLVLSGDLVSEDEYVKPVSKSIPIITLAPGQKLKFEAYARLGTGK
                     DHAKWQPTSSAVVKDGNDKDETILIIETTGSLTAEETIKTALKIINSKINNFGDVIKS
                     LEIPSKTR"
     gene            772..1161
                     /locus_tag="VIL14_05080"
     CDS             772..1161
                     /locus_tag="VIL14_05080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18e"
                     /protein_id="HEY8523115.1"
                     /translation="MGIVNMENDEVKTMFAHTLNDNIKWTLRIAYKKNKTPLWKTLEK
                     KIESSRSNKSEINIGKLENLTKDGETIIIPGKVLGNGVLTHKLNVASFSISLPAIKKI
                     LDAGGKVITINDFVNQYPDGKGVRIIG"
     gene            1154..1633
                     /locus_tag="VIL14_05085"
     CDS             1154..1633
                     /locus_tag="VIL14_05085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HEY8523116.1"
                     /translation="MDRSNNNSNTVSNINKQIIVDASNCIAGRICSNVSKLLIQGNRV
                     VIINSERAMLSGNRYKTIEDYKKHLEVGSVTNPIHGPYHPRRPDRILTKMVRGMISRR
                     KPSGIMAFKRLRVYIGMPTEFQSSKEIKIFDNAKITKSESYYITIGDVAKQIGWKGE"
     gene            1640..2092
                     /gene="rpsI"
                     /locus_tag="VIL14_05090"
     CDS             1640..2092
                     /gene="rpsI"
                     /locus_tag="VIL14_05090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HEY8523117.1"
                     /translation="MTKTTTIDLYPGQRKTSRAVATISKGNGKVRINNIPAEIIQPDI
                     SKELILTPMNIIGDIRDKIDITVKVEGGGFMGQAFASAVAISRALSGEAKGGRDPKDH
                     PLSKSIRQEIRKKITEFDRHLLAGDPRQAESKKFGGPGARRKKQKSYR"
     gene            2181..>2326
                     /locus_tag="VIL14_05095"
     CDS             2181..>2326
                     /locus_tag="VIL14_05095"
                     /inference="COORDINATES: protein motif:HMM:NF013349.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome assembly factor SBDS"
                     /protein_id="HEY8523118.1"
                     /translation="MTDNKSSIVRLILNADKFEILVKPDPALDYKLGKKVDISNILVS
                     DEIYS"
BASE COUNT          917 a          306 c          399 g          704 t
ORIGIN      
        1 tttaattaat tctgatgtta gagcctattg atatcttaac cctctcttat atttagtagt
       61 agtcggtaga tttttaagag tgcattggac aaaaaacttg aattactatt ggacttgtct
      121 ataaatattt tggaaaagac agatgaaaaa ataatactaa aagttaataa tattccaaga
      181 cagtatttga atgctgtcag aaggattgca atcagcgaag ttccaacatt agcaattgat
      241 gatgtagtta ttctagaaaa ttcatcagtt atgcatgatg aggcaatagc tcatagattg
      301 ggattaattc ctttaagaac ggaattaaat agatttgtct tttcaaatca atgtgattgt
      361 aacaatacat tgggttgttc taaatgtcgt atattgttga ttttagatgc ggaatcatca
      421 gaaaaaacac gacttgtatt gtctggcgat ttggtatcag aagatgaata tgtgaaacca
      481 gtaagtaaaa gtataccaat aattactctt gcccctggac aaaaattaaa atttgaagcg
      541 tatgcaagat taggcacagg aaaagatcat gcaaagtggc aacctacttc ttcagctgtt
      601 gttaaagatg gtaatgacaa agacgaaaca atccttataa ttgaaactac cggttcatta
      661 actgcagaag aaactataaa aacagcacta aagattataa attctaaaat aaataatttt
      721 ggtgatgtaa taaaatcatt agaaatacca tctaaaacta ggtagattta tttggggatt
      781 gttaatatgg aaaatgatga ggttaaaacc atgtttgctc atactttaaa tgataatatt
      841 aaatggactt tgcgtattgc atacaaaaaa aataaaactc ctttatggaa aacactagaa
      901 aaaaagatcg aaagttctcg atctaataaa tctgaaatta atattggtaa attagaaaac
      961 cttactaaag atggagaaac tattataatt ccaggaaagg tcttaggtaa tggggttctt
     1021 acacataaat taaatgtagc ttctttctcc atttcacttc ctgcaattaa gaaaatactt
     1081 gatgcaggag gaaaagttat taccatcaat gattttgtaa atcaatatcc agatggaaaa
     1141 ggtgtaagaa taattggata gatctaacaa taatagtaat actgtttcaa atatcaataa
     1201 acaaataata gttgatgctt ccaattgtat tgccggtcga atatgttcta atgtatcaaa
     1261 acttttaatt caaggaaata gagtagtaat aatcaattct gaaagagcaa tgttatcagg
     1321 aaatagatat aaaacaattg aagattataa aaaacatctc gaagtaggtt ctgttaccaa
     1381 ccctatccat ggaccttatc atccaagaag accagataga atattgacta aaatggttag
     1441 aggaatgatt tcaaggagaa agccaagcgg cataatggcc tttaaacgtt taagagtata
     1501 tataggaatg ccaacagaat ttcaaagttc aaaggaaata aaaatttttg ataatgctaa
     1561 aataacaaaa tctgaatcat attacattac aattggagat gttgcaaaac aaataggttg
     1621 gaaaggagaa taataagaga tgactaaaac tactactata gatctgtatc caggtcagag
     1681 aaaaacgtca agagcagttg ctaccatttc caaaggaaat ggtaaagttc gaattaataa
     1741 tattccagca gaaattatac aacctgatat ttcaaaagaa ttgatattga ctcctatgaa
     1801 tataattgga gatataagag ataaaattga tatcacagta aaagttgaag gtggtggatt
     1861 tatgggacaa gcttttgcaa gtgcagtagc aatatcacgg gctttatcag gagaagctaa
     1921 aggaggacgt gatccaaagg atcatccatt gtcaaaaagt ataagacaag aaattcgcaa
     1981 aaaaataact gaatttgata gacatttgct cgcaggagat cccagacagg ctgaatccaa
     2041 gaaatttggt gggccaggtg ctcgaagaaa aaaacagaag tcataccgtt agttattatt
     2101 attattttta ttttacattg aaaattttca atgataaatc tctatgcata tatattacaa
     2161 aatctcattt ttaatattct atgactgata ataaatcctc aatagtccga ttaatactta
     2221 atgcagataa atttgaaatt ttagttaaac ctgacccagc actagattat aagctaggaa
     2281 aaaaagtaga tatttctaat attttagttt cagatgaaat ttattc
//
LOCUS       DATCMF010000399         2238 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_580328, whole genome shotgun sequence.
ACCESSION   DATCMF010000399 DATCMF010000000
VERSION     DATCMF010000399.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2238)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2238)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2238
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_580328"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            705..974
                     /locus_tag="VIL14_05100"
     CDS             705..974
                     /locus_tag="VIL14_05100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523119.1"
                     /translation="MIVLLLLIGIVLVIPLQQVFAQIGAAEQMMSHMRFTHTQLANNI
                     DQIKQLIKSNNTSEALNLLDGMELKINHMNTMFNDLVWELSNKGH"
     gene            complement(1819..2091)
                     /locus_tag="VIL14_05105"
     CDS             complement(1819..2091)
                     /locus_tag="VIL14_05105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523120.1"
                     /translation="MNQSVIAIPFVITFVYALSLNNEYNNVMGDNNNDSYISQGIFLA
                     NTIPITAVQQDRESYENEPITDLPLIDTPCKSPCPPSAEMCIYMCK"
BASE COUNT          831 a          284 c          288 g          835 t
ORIGIN      
        1 tatcagctag atttctataa ctatatgcag gaaaaagatt catctgagaa tcatcagtaa
       61 acaacctaaa atattattga tttaactaat tttagaatat gggtgttgga gaaatttttc
      121 ttttctttat tactttagtt atagtattac tttctagaat attatcaatt atttttgctt
      181 cattgtatta gtaattctga tcattttttt aaattcttat gatatcatca atgatgtaca
      241 tagcatatct tagcttaata gtttaccaac tgaaagcaaa cattttttat catactctat
      301 tgtaatatct ctccaccaaa acgtttgtaa ccaatttcaa tgggtgttga gttttcttga
      361 cacccattta ctaccaactt aaaatcaata actaaaagaa ggaaaatcta atagaaccta
      421 gagttgtatt attattgttt gaattaatta aatagaaaat tattaattct aataaaatta
      481 tagatttctt tcgcagttta taaataattc tttaaataat gttggattgg attaatattt
      541 ggtaatggtt aaactaaatg aatatacaaa ataatgtttt atctccatac aagttaatac
      601 ataattaaat tcgattaaaa tgagaaaaag aatactaaag aaataagcct attcttctaa
      661 atgtttaaaa gattaaattg tataataata ctatgaagac aattatgatt gtacttctgt
      721 tactgattgg aattgttttg gttattccac tacagcaggt attcgcccaa ataggtgctg
      781 cagaacaaat gatgagtcat atgagattta cccataccca actagcaaat aatatcgatc
      841 agattaaaca attgatcaaa tctaataata cctcagaggc ccttaatcta cttgacggta
      901 tggaattaaa gattaaccat atgaatacaa tgtttaatga tcttgtatgg gaattgtcca
      961 ataaaggtca ttaatacttt gacttcaaaa tactatctca attttattta tgagaaaaga
     1021 aatttttctg ttctttatca tggtattact accagccact aactttaata aattctatga
     1081 gtaatgtaaa aattctttta cgataatttt tgtatttgta aaataaaaaa tgattggata
     1141 attctaaatt tctatctaaa ttacttatcg tgctgttaat gtattgagat tacccaaatc
     1201 cttgatcact ttacattacg agctttgtaa tcgccttaag tcttcactgg aaacaaatat
     1261 gatattaatc tccaatttgt ctcagtatat gtctaataac aatttttcat cactttaata
     1321 tgataagtca agatacacga tatatcatag tctagcattt taccaatttg gctcaatttg
     1381 gatagactat gacaatttta aatgatattg attaacttgg ttcacatatt tatatatatt
     1441 ttataatgta ataaagaata ctcaaaccat ttaggcatac attagtagtc atagccggta
     1501 gtccccactc catgatgata gtcttctgcc agctatggct attaattgat aataagaata
     1561 ttttaaattt ttaaatatat aatagtaata agatatacta tcataataaa tcaaaaatcc
     1621 gaattgtaga aggagataat gagtttttca ataactttaa agtttgtatt aaaatatcat
     1681 agaatggaat tagttattga ggataggtta attcaaagat attaaaatag ataaccattg
     1741 cttgtgagtt taataacata caatgatttc aaaatactga tatataattc acaataaaaa
     1801 taaaaatatt atttaatttt atttacacat gtagatgcac atttctgcag aaggtggaca
     1861 aggggattta cagggagtat caatgagtgg taaatctgta attggttcat tttcatatga
     1921 ttctctatct tgttgtactg ctgttattgg aatagtattg gctagaaaaa ttccctgaga
     1981 tatgtaactg tcattgttgt tatctcccat aacattattg tattcattat ttaaactaag
     2041 tgcataaacg aatgttatta caaaaggaat tgcaataact gattggttca tactactatt
     2101 tcactataat aaatatatca ttcaatgaat aaaaagattt taatataaaa ttagtcaata
     2161 ctatctataa catttttagc tattataagt tgtagagaaa atgctattaa tttagtaaga
     2221 aaaaattcta tgactttt
//
LOCUS       DATCMF010000400         1547 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_580399, whole genome shotgun sequence.
ACCESSION   DATCMF010000400 DATCMF010000000
VERSION     DATCMF010000400.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1547)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1547)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1547
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_580399"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(115..867)
                     /locus_tag="VIL14_05110"
     CDS             complement(115..867)
                     /locus_tag="VIL14_05110"
                     /inference="COORDINATES: protein motif:HMM:NF013866.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEY8523121.1"
                     /translation="MYSTIIIVILLENGSLVRIPIDKESREEKIEGNLTIPKSSKSLV
                     IFAHGSGSSRFSTRNQYVASVLNKDGVSTLLIDLLTEREEKKDVITKEYRFNIPLLGE
                     RLIAVTDWIGNQNNQFNSFPNTLGYFGSSTGSAAALIAADKRYENISAIVSRGGRVDL
                     ASKYSSLRQIKCPTLFLVGEYDYSVIEWNQDMIDKQLINVEKKKIVIIPQSSHLFEEP
                     GKLEEVAKYASGWFRCYFQIKEKNDNNNRNNP"
     gene            1342..>1547
                     /locus_tag="VIL14_05115"
     CDS             1342..>1547
                     /locus_tag="VIL14_05115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523122.1"
                     /translation="MKDTDDNKSQDSKIGKDNEYNLQNPNTQNQIRQSEQAVERTLED
                     TRNNINKLTNEARREVSKSTEKMK"
BASE COUNT          567 a          228 c          175 g          577 t
ORIGIN      
        1 aaaagtactt cttaagttat ttattattat ttatttaatg tgcaagaaaa taattttaaa
       61 attccagaat ttatataaaa attaataaat aatatttata aaattttttc caaattaagg
      121 attatttcta ttattattat catttttctc ttttatttga aaataacatc taaaccatcc
      181 acttgcatat tttgctacct cttccaattt acctggttct tcaaataaat gacttgattg
      241 aggaataata actatttttt tcttttctac atttattaat tgtttatcta tcatatcttg
      301 attccattca ataacagaat aatcatattc tccaactaga aacaaagttg ggcatttgat
      361 ttgcctcaat gaggaatatt ttgaagccag gtctactcta cctcctcttg atactatagc
      421 acttatgttt tcatatcttt tgtctgcagc aattaaagct gctgctgatc ctgtactgga
      481 cccaaaataa cccaatgtat tagggaagga attaaattga ttattttgat ttccaatcca
      541 atctgtgaca gcaattaatc tctcacccaa aagtggaata ttaaacctat attcttttgt
      601 aataacatct tttttttctt ctctttctgt taaaagatct attaatagag ttgaaacacc
      661 atctttattt aaaacgctag ctacatattg attcctagta ctaaatctgc tactaccact
      721 tccatgagca aagattacca aactttttga agatttagga atagttaaat ttccttctat
      781 tttttcctct ctagattctt tatctatcgg tattcttact aaacttccat tttccaacag
      841 aattactatt ataatagtac tatacaataa taaatgtcat tttctcgttt acgaatcgaa
      901 gtaaatgtgt taattggaaa atcttcattt tcatcaataa ttattaatcg caactaaaat
      961 aacaagaagt ataacgctta ataaagcgta atcttagatt taatttaaaa gattgatact
     1021 gatactacga tttatagaat aaaatattgt tgttatcgta ttctacaact agttgaccat
     1081 tgatttttat aataatgtaa atacagccct cattggaatt aaggaaatta ccttaacata
     1141 tcaacgatta ttatattatc gtttattgta attgttatta tagaataata taatgttttt
     1201 attggttaat taataagatc taaagattct ttgcacaaag acatgaatat atgtccttaa
     1261 ttctcctttt tattaaccta ataagatatt ttttgataat ttatttataa caattatata
     1321 taatattgta tactatgtta tatgaaggat acggacgata ataaaagtca agatagtaag
     1381 attggaaaag ataatgagta taatctccag aatccaaaca cccaaaatca aataagacaa
     1441 tcagaacagg ctgtagagag gacattagaa gatacacgca ataatataaa taaacttaca
     1501 aacgaagcac gaagagaagt atcaaaatct actgaaaaaa tgaagga
//
LOCUS       DATCMF010000401         1608 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_117953, whole genome shotgun sequence.
ACCESSION   DATCMF010000401 DATCMF010000000
VERSION     DATCMF010000401.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1608)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1608)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1608
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_117953"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..265)
                     /locus_tag="VIL14_05120"
     CDS             complement(<1..265)
                     /locus_tag="VIL14_05120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523123.1"
                     /translation="MIHFEENYSYRSFTIGTTLPYYMFDIEDSIRSHYKLKGIEDIKS
                     SFNFKIRNKFKSLSKKKLNIINPDIKINLFISDNNDYSIQVLSR"
     gene            complement(452..>1608)
                     /locus_tag="VIL14_05125"
     CDS             complement(452..>1608)
                     /locus_tag="VIL14_05125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020150.1"
                     /note="with 7S RNA and Srp19 binds to the signal sequence
                     of presecretory protein; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="signal recognition particle protein Srp19"
                     /protein_id="HEY8523124.1"
                     /translation="DHIITILYNEISSLLGYTGNQIIHIDKTPSLQEDSFHFQPGKKN
                     IILMLGIQGSGKTTCTVKIARWLSRHGYKVAIIGADTWRPGALTQLKMNSIKIKVEVY
                     GEEENKDPISIVKNGLEYYKSQDYDVIVIDTAGRHKEESGLLEEMNEIHKVTNPDLVL
                     LVIDGTIGQQAYSQAKAFHDSAPIGGIVITKLDGTAKGGGAMAASAVTGAKIFFIGTG
                     ERIDDLELFSPTRFVGRLLGMGDIKALLDMAKKLEIEADETQAKRLLGGKMTIEDFYS
                     QMENVNKMGFRNVIENLPGLSGMVKDDQLDVLQGKIEKWRFIIQSMTKEEKKDPNIIN
                     DARRKRISRGSGITEHEVKDMIKQYNNSKTMMKQAKGRQMHGMLRRFGFG"
BASE COUNT          487 a          298 c          201 g          622 t
ORIGIN      
        1 aacgagataa aacttgaata gaataatcat tgttatcaga aataaataaa ttaattttaa
       61 tatcaggatt gatgatgttt agtttctttt tggatagaga tttaaatttg ttcctaattt
      121 taaaattaaa agatgatttt atatcttcta taccttttaa tttgtaatgt gacctaatcg
      181 agtcttctat atcaaacata taatatggta gtgtagttcc tattgtaaat gagcgatagc
      241 tataattttc ttcaaaatga atcatttcga acattttatg tacaatttca ttaatcttac
      301 taaaaatgcc tttgcatata aagcaattta tattatttat tttaaaataa tgtttgaaag
      361 taggaaaatt tcttttcaga cacatataac ataattgata gtcaaaactc aataagtttg
      421 aataaatcat atatttcgat ttacccacta tttaaccaaa accaaatctt ctcaacatgc
      481 catgcatttg tcttcctttt gcttgtttca tcatggtttt tgaattatta tattgtttaa
      541 tcatatcttt tacttcatgt tctgtaattc cagaacctcg agaaattctc tttcttctag
      601 catcattgat aatattggga tcttttttct cctcttttgt cattgactga attataaacc
      661 tccatttttc aatttttcct tgtaatacat ctaattgatc gtcttttacc attccagata
      721 atccaggtag attttctata acgtttctaa atcccatttt attaacattt tccatctgag
      781 aataaaaatc ctctattgtc atttttcccc ctaaaagcct cttagcttga gtttcatctg
      841 cttcaatctc aagtttctta gccatatcta agagggcctt gatgtcaccc atccccagca
      901 atcgtccaac aaaccgagtt ggtgagaata attctaaatc gtcgatacgc tcgccagtac
      961 ctataaaaaa gatttttgct cctgtaactg cggatgcagc catagcacct ccacccttgg
     1021 ctgttccatc tagttttgtt ataactattc ctcctatagg ggctgaatca tgaaaagctt
     1081 ttgcctgact ataagcttgc tgtccaattg ttccatctat aactaaaaga accaagtccg
     1141 gattagtaac cttgtgtatt tcattcatct cttccagtaa tccagattct tctttatgtc
     1201 tccctgccgt atcaataaca attacatcat aatcttgaga tttataatat tctaatccat
     1261 tttttactat tgaaattggg tctttatttt cttcttcccc atatacttca actttaattt
     1321 ttatactatt catttttaac tgtgtaagag cgcctggtct ccaagtatcc gcaccgatta
     1381 ttgctacctt ataaccatgt cgtgaaagcc atctggcaat tttgacagta catgtagttt
     1441 taccactccc ctgaattcct aacatcaata ttatattttt tttacctggt tgaaaatgaa
     1501 aagaatcttc ttgcagggat ggagttttgt ctatatggat aatctggttt ccggtataac
     1561 ccaaaagaga agaaatttca ttatataaaa ttgtaattat atgatctt
//
LOCUS       DATCMF010000402         1528 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_580542, whole genome shotgun sequence.
ACCESSION   DATCMF010000402 DATCMF010000000
VERSION     DATCMF010000402.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1528)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1528)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1528
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_580542"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(55..1368)
                     /locus_tag="VIL14_05130"
     CDS             complement(55..1368)
                     /locus_tag="VIL14_05130"
                     /inference="COORDINATES: protein motif:HMM:NF012296.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA];
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HEY8523125.1"
                     /translation="MEIYPPVEQRFSPFDFYSSMRKNNPIVFDEENERWGVYRYNDIE
                     KILRDHSRFSSKFGPLDLPLGIPPEYEENIHRPSLINSDPPYHRKLRSIVDTLFVPIE
                     ISKLAPRIENIVNEIIDKIIEKNNKYTTSTMDLISDFAYPLPATVIAELLGVPFEDRD
                     TYHQWADVIVGLEENSNIDYIKKVSKTFDDMDVYFSKLIEERKKSSSSTKDSDDNDTL
                     IGRIIRAKVDGHSLSESEILTFSHLLLNAGHITTVNLIGNSIFSLLENPQELKRLQEN
                     KNSLIKPAIEETLRYRSPVQLVIRIANEDVTLSEEKEGGVEGREIEKQEIKIKKGQKI
                     ILFLGSANHDESVFTDPERFDITRKNLRHMAFGTGIHFCLGAPLARLEGQIALKIILE
                     RFENLQFNFDNSDREDLYTKVTPLKSSLFLGLSHLPIRFQTKNRQ"
BASE COUNT          499 a          244 c          206 g          579 t
ORIGIN      
        1 accttcctta ttacaaagat ataaaaagtg aaaagattta ctaatctaat tttattattg
       61 tctattctta gtttggaaac gtattggcaa gtgtgataat ccaaggaaaa gagaactttt
      121 gagtggagta acttttgtat atagatcttc tctatcacta ttatcaaaat taaattgaag
      181 attctcaaat ctttcaagaa ttatttttaa tgctatttgt ccttcaagtc tcgccaaagg
      241 agctcctaaa caaaaatgaa ttccagttcc aaaagccata tggcgtaagt ttttacgagt
      301 aatatcaaat ctttcaggat ctgtaaatac tgattcatca tggttggcag aacccaaaaa
      361 taatattatc ttttgacctt tcttgatctt tatttcttgt ttctctattt ctcttccttc
      421 aacacctcct tctttttctt cagataaagt tacatcctca tttgcaatac gaattactaa
      481 ttgtactggt gatcgatatc ttaaagtctc ttctattgca ggtttgatta atgaattttt
      541 attctcttgt aatcttttta attcttgagg attctcaagt aacgagaaaa tcgaatttcc
      601 tattaggtta actgttgtaa tatgtccagc atttaaaaga agatgggaaa aagtaagtat
      661 ttcgctttca gataaagaat gtccatctac tttagctcta atgatacgac cgataagagt
      721 atcgttatca tcactatctt ttgttgaaga agaacttttc tttctctctt ctattaattt
      781 gctaaaataa acatccatgt catcaaaagt tttggatact tttttaatgt aatcaatatt
      841 gctattttct tcaagaccta ctattacatc tgcccattga tgataagtat ctcgatcttc
      901 aaatggtact ccaagaagtt ctgcaattac agttgcaggt aatggataag caaaatctga
      961 tatcaagtcc attgtactag tagtatattt attatttttt tcaatgatct tatcaattat
     1021 ttcatttaca atattctcaa tacgtggtgc taattttgat atttctattg gaacaaataa
     1081 tgtatcaaca atactacgca actttctatg ataaggagga tctgaattta taaggcttgg
     1141 acgatgaata ttttcttcat actctggagg tattcctaga ggtaaatcaa gtggaccaaa
     1201 tttactggaa aaccttgaat gatcccttaa tatcttttca atatcattat aacgatatac
     1261 tccccatcgt tcattttctt catcaaaaac aataggatta ttttttctca ttgatgaata
     1321 aaaatcaaaa ggcgaaaacc tttgttctac tggaggatat atctccatat attttctaat
     1381 tgcaaagatt atttatgtat ttattatttt gacaattttg agctaacctt tttaattgtc
     1441 tataggaaat atgattccaa ggtaaactga atatggtttt atttataaat tgcagcaata
     1501 tatctgtaaa aaaccaacta aagcaact
//
LOCUS       DATCMF010000403         1811 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_448025, whole genome shotgun sequence.
ACCESSION   DATCMF010000403 DATCMF010000000
VERSION     DATCMF010000403.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1811)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1811)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1811
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_448025"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            482..1441
                     /gene="tfb"
                     /locus_tag="VIL14_05135"
     CDS             482..1441
                     /gene="tfb"
                     /locus_tag="VIL14_05135"
                     /inference="COORDINATES: protein motif:HMM:NF012600.4"
                     /note="stabilizes TBP binding to an archaeal box-A
                     promoter; responsible for recruiting RNA polymerase II to
                     the pre-initiation complex; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription initiation factor IIB"
                     /protein_id="HEY8523126.1"
                     /translation="MEKSGEQQKSEKINPKSPSYCDQCQKESIIFDNSANEFVCSSCG
                     CVINNELLNNENMQGYIVQSDYNDRARTGMPESLAVHHKGLSTLIGMGDIDARGKALQ
                     PKQKMEIQRLRTWNSRSQLNDSVSRNLEKALKYLNNFGDKLSVNHAVIESAAYIYRKA
                     AIKKLAKGRSTIGLVGASLYAACREASTPKTILDISEICNISSKELMAHYKLILNELE
                     LNIPATKGPDYVTIICNRLKLSEKTKREALQIFSKVEQKGISIGKNPRAIAGAVIYLA
                     SQVCDEFIRQVEICQVADISTVSLRKRCKEIKALTEMDNLVNI"
     gene            complement(1513..1689)
                     /locus_tag="VIL14_05140"
     CDS             complement(1513..1689)
                     /locus_tag="VIL14_05140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-oxalocrotonate tautomerase family protein"
                     /protein_id="HEY8523127.1"
                     /translation="MPLITVSLYPGRSDEQKKIFVEKITESAVEILKTKPEHVIVVFE
                     ENPKENWYLAGKKL"
BASE COUNT          699 a          240 c          272 g          600 t
ORIGIN      
        1 aacaaatgta tttttgtcaa gaaaataagt taaggtttac tatttcaaga acaagcttct
       61 gaaatagtga atctcggtat tcctcataaa ggcaagaaaa atcatcgtaa aattattatt
      121 tttaattaaa gaaataaata gatatgagta ttgtatatgt gtactttctt gagacatcta
      181 ataaatttga tatcaacttt gtctatattc gcaaaaaatt tactccacta ggcttatata
      241 ctgagtaatt gtgctataag aaatttgtat aagaaacatc aaatgtaatt atatagaaaa
      301 tgtacaaaat acattattct ttaataaagt tagatttctt tacaatataa cataatgaaa
      361 ttagaaaata gtgtttataa aatattatct tctaatattt ctttttaata agggtttttt
      421 atagaatttt ccaatttcta gaaaacatat aaataaaata actgctacct atcaaatttc
      481 aatggaaaag agcggagaac aacaaaaatc tgaaaaaata aacccaaaga gcccttcata
      541 ttgcgatcaa tgtcagaagg aatccatcat ttttgataac tctgctaacg agtttgtttg
      601 ttcttcttgt ggatgtgtaa ttaataatga attactaaat aatgaaaata tgcaaggtta
      661 tatcgttcaa tcagattata atgatagggc tagaacagga atgcctgaat ctttagccgt
      721 tcatcacaaa ggtttatcga cattaatagg aatgggcgat atcgatgcac gaggtaaagc
      781 tttgcaacca aaacaaaaaa tggaaatcca acgactaagg acttggaata gtcgatctca
      841 actgaatgac tctgtatcac gaaatctaga aaaagcttta aaatatttaa ataattttgg
      901 agataagctc tccgtaaatc acgctgttat tgaaagtgct gcatatattt atagaaaagc
      961 tgcaataaaa aaattagcta aagggagatc aacgatagga ttagtaggag cctcactata
     1021 tgctgcctgt cgcgaagcat caactcccaa aactatttta gatatttctg aaatttgtaa
     1081 tatatcaagt aaagagttaa tggctcacta taaactcata ttaaacgagt tagagcttaa
     1141 tattcctgct accaaaggcc ctgattatgt tactattatt tgtaataggc taaaattaag
     1201 tgaaaagact aaaagagaag cattacaaat attttcaaag gtcgaacaga aaggtatttc
     1261 aattggtaaa aaccccagag caatagcagg ggcagtaata tatttagcat ctcaagtttg
     1321 tgatgaattt atcagacaag tagaaatttg tcaagtggca gatatttcaa cggtttcttt
     1381 aagaaaaaga tgcaaagaaa ttaaggcttt aactgaaatg gataatcttg ttaacatata
     1441 aaaattgact actactatct attaaataaa gaaaaaaaag aaatgaagtc attggaaatg
     1501 atggaaaatt atttatagtt ttttccctgc caaataccaa ttctcctttg gattttcttc
     1561 aaatacaaca attacatgtt ctggttttgt ttttagaatt tctactgcgg attcagttat
     1621 tttttctaca aatatttttt tttgttcatc cgatctgcct ggataaaggg atacagtaat
     1681 cagaggcatt taatattttt aatagaactc ttaaataaat tcatttaatt ggtagggatt
     1741 tactattaat aatattaatg aaagaaattt ttcaaaaaat tatagtatca attaataccc
     1801 attttatcat t
//
LOCUS       DATCMF010000404         1598 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_383111, whole genome shotgun sequence.
ACCESSION   DATCMF010000404 DATCMF010000000
VERSION     DATCMF010000404.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1598)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1598)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1598
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_383111"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            133..774
                     /locus_tag="VIL14_05145"
     CDS             133..774
                     /locus_tag="VIL14_05145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEY8523128.1"
                     /translation="MYQEYSDSTILDSVDSSPPSYFFSKSLKILIAEDETDIGNLYKT
                     ALEMRNHQATVTTNGEDCLKVYHEVCQSNRFATEQQLYSQPSYSIKVVNSRLFDVVLL
                     DCNLPYINGIEVAKEILAVNPHQRIIFASAYVKDTVIDTIRNLKHLKESIQKPFGMQK
                     LIDLIEDKKIYEELQRLNVDLEVIKAINPSHEQIVDLLNRLHNVQINNLNGKE"
BASE COUNT          541 a          287 c          276 g          494 t
ORIGIN      
        1 cttaatatta cttgaattat tctgatcgac gtaacaacta caccttctgt attttttatc
       61 aatcacaagc aaacgtagaa caaccattgt cactacgacc acagttctta ttgttgatag
      121 gaaggcgtaa ttatgtatca agagtattct gattctacca ttcttgattc tgttgatagc
      181 tctcctccct cctatttttt ttccaaatcc ctaaaaatat tgatagcaga agacgaaacc
      241 gatatcggga acttgtacaa aacagcctta gagatgagaa accaccaagc cacagtaact
      301 accaacggtg aagattgtct caaagtctat catgaagttt gtcagagtaa cagatttgct
      361 acggagcagc aattgtattc acaaccatca tactctatta aagtagtaaa tagccgttta
      421 tttgatgtcg ttcttcttga ttgcaatttg ccatacatca atggtatcga ggttgccaaa
      481 gaaattttag cagtaaatcc acatcagaga ataatatttg cttcagcata tgtaaaggat
      541 acagttattg atacgataag gaatttaaag catcttaaag aatctattca aaagccattt
      601 ggaatgcaaa aactcatcga tctaatagaa gataaaaaga tttacgaaga attacaaagg
      661 ctcaatgtgg atttagaggt catcaaagcc ataaatccta gtcacgagca aattgtagat
      721 ttactaaata gattacacaa tgtccaaatt aataacttga atgggaaaga ataatcatat
      781 tagtttattc ttgaactctc tgggtctgat aggtagttaa acagatggaa tctctgctaa
      841 gatagtatta acagctctct tgagatgaat attatgattt ttgagcttca ttcaatacaa
      901 ttgtatacac tattttcact tcttccaagt gatgtaagac agtcatggaa cctagatagt
      961 tgtaacgaac tcttgtttat tatgtgatga agaaaaagga ggaaaaaaga ttaactaccc
     1021 tgtaagttac tacggctatg ccgttcacat ctccaaccat atgtgataga tgtgatgaca
     1081 agatactaaa ttacaggtgc tgttttattt tttcttcata gtttgcttca agtcctcttt
     1141 ttcaatcttg atagaagact ctgatgaaaa cacatgctgg tgctactaat actagtaaca
     1201 tgacaacatt cgaagaaaat attacgagtg caggaaatgc aacatctgga gtaaattgga
     1261 ccaaatagtc caaacccaaa gcttatcttc tgacatagcg gcttgtttcc atcgatacag
     1321 tatactggca tagaatcaac atgcgaaaaa ggatcataat gtcgtcagga atctgtgcca
     1381 ggtcgtctga taattatcac aattagttcg gctaaatatc tctgacagta tagattcttt
     1441 gatggctttc attctcacca cgctatagtc gctaaaagaa atctcccaca tctcaagcct
     1501 tagtaaatag actgaatggt ggatgatggg gaactagtta gatcacatca aatccattca
     1561 tttttggcat gttggctatg aagtgcatca ttagctat
//
LOCUS       DATCMF010000405         2294 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_383344, whole genome shotgun sequence.
ACCESSION   DATCMF010000405 DATCMF010000000
VERSION     DATCMF010000405.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2294)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2294)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2294
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_383344"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..332
                     /locus_tag="VIL14_05150"
     CDS             <1..332
                     /locus_tag="VIL14_05150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523129.1"
                     /translation="KWLEDEGFNLTLINDPSLAKLNFKSDNYDLILIGFKMSVINGFN
                     LYNKINEISKKVEHTPKEFRVCFMTSSVINYKVLAEIHPEIGEECYVSKEVPKEVFIE
                     HVYSLIS"
     gene            519..1949
                     /locus_tag="VIL14_05155"
     CDS             519..1949
                     /locus_tag="VIL14_05155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HEY8523130.1"
                     /translation="MQKYDLIVIGAGSGLDIANAAAQKGLTVALIEKDRMGGTCLNRG
                     CIPSKLLIHSADVIQTINKASLFGIKIDGISIDYQKIVNRVNRITDADSEEIKNGLQQ
                     AKNPILFTEKCTFVGHKTIAIGKIEEKSNNDGNGVQIITAEKIVIAAGTRPRIPKIKG
                     LANSGFITSDDALRLQKQPCILTFIGGGYIACELAHFFGSLGTTINIIERNDFLIPNE
                     DEEISHKFTEVFAKKYNLYLGFETELVLSNNSSNNDSNSNDKRFHIIAKNKGGRKIEL
                     ESDQLLVSVGRIPNTDLLNLEKTGVKKNEKGFVDVNEYLETTAKGIFALGDIVGRYQF
                     KHNANLEAQYAYNNIIYPNRKQSVNYTAMPHAIFSSPQVAGVGFTEQELKKKNMPYTK
                     STYPYISTGMGKALEDKDGFVKFIVDKNNRKILGCHIIGTDASILIHEVLVAMRIGDG
                     TIDSITKTIHIHPALSEVIIRAAEEI"
BASE COUNT          885 a          318 c          363 g          728 t
ORIGIN      
        1 aaaaatggct ggaagatgaa ggatttaatt taacactgat aaatgatcct tcattagcaa
       61 aattaaactt taaatctgat aattatgatc ttattcttat tggttttaaa atgtctgtaa
      121 ttaatggatt taatctttat aataaaataa atgaaatctc aaaaaaagta gaacatacac
      181 caaaagaatt tagggtgtgt tttatgactt catctgtaat aaattataaa gtgttagccg
      241 aaatccatcc tgaaatagga gaagagtgtt atgtttcaaa agaagttcct aaagaagttt
      301 ttatagaaca tgtctattca ttaatttctt aatttcctac cttttactta ttaaatagat
      361 ctaatacagt gaactgatca taataattta gccttttcat aatgcaatag aatgatcgcc
      421 ttatatttcc tccactataa gtacgacaaa tgtaatgtct tgtttgtaca taaattttac
      481 tgaaacttta taaaaactaa tacgatatca aacatccatt gcaaaaatat gatcttatag
      541 tcatcggagc aggctcagga ttagacattg ctaatgcagc tgctcaaaaa ggacttacag
      601 tagcacttat tgaaaaagac agaatgggcg ggacctgctt aaatagaggc tgtataccat
      661 ctaaattact tatacacagc gctgatgtaa ttcaaacaat caacaaggct agtctctttg
      721 gcataaagat tgatggaatc tctatagact atcaaaaaat tgtaaataga gtaaatagaa
      781 tcactgatgc tgactctgaa gaaataaaga atgggttaca acaagcaaaa aatccaatac
      841 tctttacaga aaaatgtaca tttgttggac ataaaacaat tgcaattgga aaaatagaag
      901 aaaagagtaa taatgatggt aatggtgtcc aaattataac tgcagaaaaa attgtgattg
      961 cagcaggaac taggcctcgt attccaaaga taaaaggact tgccaactcc gggtttatca
     1021 caagtgatga cgctcttcgt cttcagaaac agccatgcat acttacattt attggtggag
     1081 gatatatagc atgcgaactt gcacattttt ttggcagctt aggtactact atcaatataa
     1141 tagaacgtaa tgattttttg attcctaatg aagatgaaga aatatctcat aaattcacag
     1201 aggtttttgc taaaaaatat aatttgtatc taggatttga gacagagtta gtattatcaa
     1261 ataatagtag taataatgat agtaatagta acgataagag atttcatatt atagccaaaa
     1321 ataaaggtgg aagaaagata gaactagaat cagaccaatt acttgtttct gtaggtagaa
     1381 ttcctaatac agatttactt aacctagaga aaacaggagt aaagaaaaat gaaaaaggtt
     1441 ttgtagatgt caacgaatac cttgaaacaa ctgcaaaagg aatttttgca ttaggagata
     1501 ttgtaggtcg atatcaattc aaacataatg caaatcttga agcacaatac gcatataata
     1561 atattatata ccccaataga aaacaatctg ttaattatac tgctatgcca catgcaattt
     1621 ttagttcacc acaagttgca ggtgttggtt tcacagaaca ggaattaaaa aagaagaata
     1681 tgccatatac aaaatcaaca tatccatata ttagtacagg aatgggaaaa gcattagaag
     1741 ataaagatgg ttttgtaaaa tttatagttg ataaaaataa tagaaagatc cttggatgtc
     1801 atattattgg cacagatgct tctatattaa ttcatgaagt gttggtggca atgcgaatcg
     1861 gcgatggtac aatagatagc atcactaaaa ctatacacat acatcctgca ctttcagaag
     1921 tgattattag agcagcagag gaaatttgac caaatgagag ttgaataaat tcgtatggaa
     1981 aatatttaca acaatagact atgtattata cttaaaaata atacctttga taaatttttt
     2041 actaataaaa tatatagata tattgttaat aatatagtta ttaagatgct tgtttttgcc
     2101 actttcctca tatctatcct ttacatatta caaattggat cttccagctg ttaagttcct
     2161 tctgttacta ttcttcgaaa acaatttgat tcaattttct ttttttcaat aagttctaat
     2221 gatgaattca attgtgcact aaataatact gaaaatggct gataccatat caaaacatat
     2281 ttgtatttat taaa
//
LOCUS       DATCMF010000406         3023 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_316241, whole genome shotgun sequence.
ACCESSION   DATCMF010000406 DATCMF010000000
VERSION     DATCMF010000406.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3023)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3023)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3023
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_316241"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            601..1149
                     /locus_tag="VIL14_05160"
     CDS             601..1149
                     /locus_tag="VIL14_05160"
                     /inference="COORDINATES: protein motif:HMM:NF019095.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHRD domain-containing protein"
                     /protein_id="HEY8523131.1"
                     /translation="MSKNNNISSILTITVLIAVTITMVSATTFSNHIVLAQSQKQFNA
                     KLSGQQEVPPVQTTTASGMAWFKPMQDKVWFKLNVTDMQGVTQAHIHTGKQGENGPVV
                     VTLYKSATPQPINGKLAYGNITANLLEGPMKGKQISDLATAMSNGGTYVNVHTEKYPN
                     GEIRGQIMMANSTSDKIMKMDK"
     gene            complement(1573..1923)
                     /locus_tag="VIL14_05165"
     CDS             complement(1573..1923)
                     /locus_tag="VIL14_05165"
                     /inference="COORDINATES: protein motif:HMM:NF012355.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="plastocyanin/azurin family copper-binding
                     protein"
                     /protein_id="HEY8523132.1"
                     /translation="MTSIILAIGIFSNPTLIAFSQQSVSITPGAPDEGNLEPFAPNAI
                     NVVPGSTVSWINEDITEHTVTANDEGSGAAPPLFDSGPIPPGMAWDNIFDSPGTFGYH
                     CVIHPWMTGRVTVG"
     gene            2509..>3023
                     /locus_tag="VIL14_05170"
     CDS             2509..>3023
                     /locus_tag="VIL14_05170"
                     /inference="COORDINATES: protein motif:HMM:NF012573.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523133.1"
                     /translation="MFSVLGLIFLLNLEGDIFEKDEYNNNKNNNIINIAWANEINGTD
                     NSDNITGTQSKDIIKGLNGNDTITGKEAGDDISGGSGDDTILGNGGRDVLKGKAGNDR
                     IEGETGNDRLYGDRGNDILIGGPGNDTFTGGLGKDVFICSTGNDTITDFNVTQEDTTP
                     QQYDCEKMRYG"
BASE COUNT         1107 a          416 c          470 g         1030 t
ORIGIN      
        1 tctcatcctc tgtcattgcc ataaatttct caaaacctat tgatgattcg ctacttagta
       61 gtggaaaagg ctcatttatc tcagtattta tgaataaagg tgaaatagta taaatgccaa
      121 taggagttac tattgctgca atgataatgc ctattattat ttttgtttta tctttcaatt
      181 aagatttcca tcgttatact ataatataaa aacaacttat tttgaaaatt acaattgaac
      241 aaataaattt acatgttcct ataactactc ttcatttctg agtctataga ttaaaaataa
      301 ttagttaaac atgatgttaa cagtgatcaa tggccttttg tgaccattct ctcaaattgg
      361 taccaaaact ggccctatta ctatcagatc agattgcaaa tgttaatttt agaatatatg
      421 aagcgaatta ttaactaact ctttttgtaa aagaattata aaatttgtgt aattattatt
      481 ctttcagttt gatattaaat gattttttat agattatatt tgcaattaca ttagtcaagc
      541 tgtctcattg gggaaaaatt tgatccatct attaaataca atgtagtgca aacatagcta
      601 atgagtaaga acaacaatat atcctcaatt ttaacaatta ctgttcttat tgctgtgaca
      661 ataactatgg ttagtgcaac cacattttca aatcacatag tattggcaca aagccaaaaa
      721 caatttaatg ccaaactttc aggtcagcaa gaagttccac ctgtccaaac tactactgca
      781 tcgggtatgg catggtttaa accaatgcaa gataaggtat ggtttaaact taatgtaact
      841 gatatgcaag gagtcacaca ggctcacata catactggaa aacaaggtga aaatggtcct
      901 gttgttgtaa cattatataa atctgctact ccacaaccaa taaatggtaa attagcctac
      961 ggaaatatta ctgcaaatct gttagaagga ccaatgaaag gtaaacaaat atctgaccta
     1021 gctactgcaa tgtcaaacgg aggtacatat gtaaatgtcc ataccgagaa atatcctaat
     1081 ggtgaaattc gtggacaaat aatgatggca aattcaacta gtgataaaat tatgaagatg
     1141 gacaaataat aagcaaatag gtatttttat tttttttaat ttacctttaa tttgaatttg
     1201 ctagttatat ttcatatctg taaacaacat tgaaaatgat tatatttttt agttttctaa
     1261 acgtttaata ttcaattgtg ggaataaaaa attctgtttt ctacttaatc aactaatgaa
     1321 taaaactttg aacacagcat agaagttgaa atatatttat aaattataaa taaaattact
     1381 agctgaaata cagaataatt ttaattttac aaaagatgag caaaatagaa tttttaagta
     1441 ttaggttgta atgttacaac gattcctcta ggacattgtt tattgtttat acttggtttg
     1501 cttatatata tataatgaaa tgtagtgcgt ttaattcatt ctaattgtta aaaaagagat
     1561 tgttttttta aattagccaa ctgtgaccct acctgtcatc cacggatgga ttacacaatg
     1621 ataaccaaat gttcctggag aatcaaatat gttatcccat gccattcctg gaggtattgg
     1681 acctgaatca aaaagaggtg gtgcagcacc acttccttcg tcattagcag ttaccgtgtg
     1741 ttctgtaata tcctcattta tccatgaaac tgtacttcct ggcacaacat taattgcatt
     1801 tggagcaaat ggttcaagat tgccttcatc tggcgctcca ggtgtaatac ttactgattg
     1861 ttgagaaaat gcaatgagtg ttgggttaga gaaaattcca atagctagta tgatgcttgt
     1921 cattattagt aaatttgaga tcaaaacttt cacagtatgc gctagagagg tttgatatat
     1981 aaaaaactat atctaattaa tttaactttt aatttaaaat catttcaatt tcaacaacta
     2041 ccatttttaa tatctacatc tcaacaataa actagaaagt aatcgtcgac aaatacgtgt
     2101 tgtattattc agggtcttct tcttcaagtt acaatacaat tttctgcttt tatatgcatc
     2161 tgaataaaaa gtctatggaa aaatagaata ccacttaact ttcttctatg ttatagaaat
     2221 attatcttag agtttggaaa agtagatttt taattactca ttattcaact tactgttctt
     2281 tattattaag aatcagacaa taaattaatt atttaaaaag tattccttat tattataggg
     2341 cattattcta ttcaaaacgt ttgttgaatt ttctatctaa aatttaagta aaaatattgc
     2401 aatagttctt ttaattgctt tgtagttgtt ttctacacta agaaaatgat agaatttaat
     2461 aaaaaaatta tatttgtaaa attaaatttt atttatacat gtttttatat gttctctgtt
     2521 ttaggtctta tatttttact aaatttagaa ggtgatattt tcgaaaagga tgaatataac
     2581 aacaacaaaa ataataatat cataaatata gcgtgggcaa atgagatcaa tggaactgat
     2641 aattcagata acattacagg tacccaaagt aaggatatta ttaaaggact gaatggcaat
     2701 gatacaataa caggaaaaga agctggagat gatattagcg gaggaagtgg agatgatact
     2761 attttgggta atggaggaag agatgtttta aagggaaaag caggtaatga tcgaatagaa
     2821 ggtgaaacag gaaatgacag attatatggt gatagaggca atgacatact aataggaggt
     2881 ccaggaaatg atacatttac tggaggactt ggcaaagatg tattcatatg cagtacagga
     2941 aacgacacaa taacagattt caatgtaact caagaagaca caactcctca gcaatatgat
     3001 tgtgaaaaaa tgcgatatgg caa
//
LOCUS       DATCMF010000407         2147 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_448469, whole genome shotgun sequence.
ACCESSION   DATCMF010000407 DATCMF010000000
VERSION     DATCMF010000407.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2147)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2147)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2147
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_448469"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1186
                     /locus_tag="VIL14_05175"
     CDS             <1..1186
                     /locus_tag="VIL14_05175"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEY8523134.1"
                     /translation="EDDFYNSWRRFIEEIINLDKDEKPDIIMHSGDFFDTPSGTDPSP
                     PPEFARKVAAEAFKKLYENNIPIVIIDGNHGRYMQYRISPLTEYTILFDNVYLFTYFD
                     IRDSIRNQQPLFKDFPTLNLRIHAHPSLESNDLPQLLLKYEDWVYIQNNNINPSMINV
                     FLAHGMIENHTLNSNFLMGDYDYIGLGDNHKMQQINDNTWYAGSTELWSFNEESYQKG
                     YLVIDIDDSSSSSKSKIKVSQKLLPQQRKIVSDHVEIYSDDNNSKIIDRIKKIFEKNG
                     LNTSYNYQTAARVKITIQGNRSYGSFYNIHEISSYLNKITLNSNEYNIVEFILEIPKY
                     YDDTSIKQIKQDDRFIEYLIEDPEKEFKKYLTSTRKEDLKKNNLDSNMLAKLFFESLK
                     NQ"
     gene            1194..>2147
                     /locus_tag="VIL14_05180"
     CDS             1194..>2147
                     /locus_tag="VIL14_05180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006302 - double-strand break repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY8523135.1"
                     /translation="MKILKIESKNFKPFDNISIPYEGYLGEGFFIIKGKNSMGKTSII
                     ESVLWGLLGEHLMAEKDRKSIIKTGESKCEVAITFEISDILYRVIRTIEVIRKRKSLQ
                     DPQNDLVKSSALLFKKEKNEERFIQLCRGPNIVNQEIESLLGVYPEVIEKTVYIRQKE
                     VDKLALADPSELRELIKNLFGLNDFDDHIKKYLKNQINSINEEIKDLKIQIGSLLTEQ
                     NEFEKEKQILKEKKEKLELKFQEIKNDKNALISYPSQEKLNKIKVSMENIEKYKKDVD
                     YKEKLYNYKKENVLVQENRIQDFQDKIFLQNSKILNLSKELQ"
BASE COUNT          944 a          245 c          314 g          644 t
ORIGIN      
        1 agaagatgat ttttataact cttggagaag atttatagag gaaataataa atctcgataa
       61 agatgaaaaa cctgatatca taatgcatag cggagatttt tttgatactc cgtcaggaac
      121 tgatccttcg ccgcccccag aatttgcaag aaaagtggct gcagaggcat tcaaaaaatt
      181 atatgaaaat aatattccca ttgttataat tgatggaaat catggtcgtt atatgcaata
      241 tagaatttca ccattaactg aatacacaat tttgtttgat aatgtatatc tttttacgta
      301 ttttgatata agagatagta taagaaatca acaaccttta ttcaaagact tcccaacttt
      361 gaatttaaga attcatgcac atccatcatt agaatccaat gacttaccac aattattatt
      421 aaaatatgaa gactgggtct acatacaaaa caataatatt aatccgagta tgataaatgt
      481 atttttagct catggaatga tagaaaatca tacattaaac agcaattttt tgatgggaga
      541 ttatgattat attggacttg gagataatca taagatgcaa caaatcaatg ataatacatg
      601 gtatgctgga tcgacagaat tgtggagctt taatgaagaa agttatcaaa aaggttattt
      661 ggttatagat attgatgatt cttcttcttc ttctaaatct aaaattaaag tgagtcaaaa
      721 acttttacct caacagagaa aaatagtaag tgatcatgta gaaatttatt ctgatgataa
      781 taattctaaa attatcgatc gtattaaaaa gatatttgag aaaaatggac ttaatacatc
      841 ttataattat caaaccgctg ctagagttaa aataactata caaggtaata gaagttatgg
      901 ttcattttat aatatccatg aaatatcatc ttatctaaat aaaattacat taaatagcaa
      961 tgaatataac atagtagaat ttattctaga aatacccaaa tattatgatg atactagtat
     1021 caaacaaatt aaacaagatg atagatttat agaatattta atagaagatc cagagaaaga
     1081 atttaaaaaa tatcttacat ctactagaaa agaagatcta aaaaaaaata atttagattc
     1141 taacatgctt gcgaaacttt tctttgaatc attgaagaat cagtagtgat attatgaaaa
     1201 ttttgaaaat agaatcaaaa aatttcaaac catttgataa tatttccata ccatatgaag
     1261 ggtaccttgg agaagggttc tttattataa aaggaaaaaa ttcaatgggt aaaacaagta
     1321 taatagaatc tgttctatgg ggcctacttg gtgaacatct gatggcagaa aaagatagaa
     1381 aatctataat taaaacggga gaatctaaat gtgaagtagc tataacattt gaaataagtg
     1441 acatcctata tagagtaata agaacaatag aagttattag aaaaagaaag tcattgcagg
     1501 accctcaaaa tgatttagtg aaatcttctg cattgctatt taaaaaagaa aaaaatgaag
     1561 agagattcat tcagctttgt agaggtccaa atatcgttaa tcaagaaata gaatcactgt
     1621 taggagtata tccagaagta attgaaaaaa ctgtatatat tagacaaaaa gaagtagata
     1681 aacttgcact cgcagatcca agtgaattaa gagaactaat caagaactta tttggattaa
     1741 atgattttga tgaccatata aaaaaatact taaagaatca aattaatagt attaatgaag
     1801 aaatcaaaga tttaaaaata caaattggaa gtttattaac agaacaaaat gaatttgaaa
     1861 aggaaaaaca aattttaaaa gaaaaaaaag aaaaacttga actaaaattt caagaaataa
     1921 aaaatgataa aaatgcttta attagttatc cctctcaaga gaaattaaat aaaattaagg
     1981 taagtatgga aaatatagag aaatataaaa aagatgtaga ttataaagaa aaactgtata
     2041 attataaaaa agaaaacgta ctagtacaag aaaacagaat acaagatttt caagataaaa
     2101 tatttctcca aaactcaaaa attttaaatc tttcaaaaga actacaa
//
LOCUS       DATCMF010000408         1905 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_517041, whole genome shotgun sequence.
ACCESSION   DATCMF010000408 DATCMF010000000
VERSION     DATCMF010000408.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1905)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1905)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1905
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_517041"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..544
                     /locus_tag="VIL14_05185"
     CDS             <1..544
                     /locus_tag="VIL14_05185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523136.1"
                     /translation="DIKFLKEQAAQIAHIAEISCNTGLGTVIAEFYGGLEIRTSFGAP
                     GIGKVTKIELNNYKAIILCIGPLSTKQILSNYSNNANILGQKMVERLLLSKDVNSFLR
                     MSHEFADFLGLTKGLCAKPIEELNNFGVECSIGMFGETIFTLVSPNDIYPVTSMLKKF
                     PGTLIVSDIDNQGALIENFD"
     gene            537..1298
                     /locus_tag="VIL14_05190"
     CDS             537..1298
                     /locus_tag="VIL14_05190"
                     /EC_number="6.3.2.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-phosphopantoate--beta-alanine ligase"
                     /protein_id="HEY8523137.1"
                     /translation="MIETNHIPSNHPRAKSLAIRQLLANGFKSGMVVSEGLIAHGRGE
                     AFDYLIGEKTSNFAFDAIKAASSLLLLAKRPVISVNGNTAALCPRDIVDLADETKSTI
                     EVNLFYRDKKRENLIAETLKKNGANIVLGVGEKEFLQIPELTSNRRHVDPEGIFLADV
                     VFVPLEDGDRTKALINMQKKVITVDLNPLSRTAQNATISIIDNIVRAIPELVKTSKQL
                     KQKSQNSLLKILNNFNNKYNIDNSLNIIRRWKCEQ"
     gene            1298..>1905
                     /locus_tag="VIL14_05195"
     CDS             1298..>1905
                     /locus_tag="VIL14_05195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HEY8523138.1"
                     /translation="MTKTNNDNNNNNNNKNQKTVVKKLVVNDIVSMKNNEKISVITSY
                     DYWSAKICDKTGIDIILVGDSGGMVMLGYDSTVPVSMKEMLIFSKAVYVGTKRSLIVS
                     DMPFGSYQIGIKHAVKNAIRFIKSGSDAVKLEGGIEIIDRIKAIIEVGIPVMGHIGLK
                     PQTTKLWEGYKVQGNTAVRGSQLLREAIELEKAGVFAIVLEMV"
BASE COUNT          705 a          261 c          360 g          579 t
ORIGIN      
        1 tgatataaaa ttcctaaagg aacaagccgc tcaaattgca cacatagcag aaatttcatg
       61 caatacaggt ttaggcactg tgattgcaga attttatggt ggactagaaa ttaggactag
      121 ttttggcgct cctggaatag gtaaagtaac taaaatagaa ttaaataatt ataaagcgat
      181 tattctttgt attggtccgc tatctacaaa acaaattctt tctaattatt caaataatgc
      241 taatattctt ggtcaaaaga tggtcgaacg attattatta tcaaaagatg ttaattcctt
      301 tttaaggatg tctcatgagt tcgcagattt cttaggattg acaaaaggat tgtgtgcaaa
      361 accaatagaa gaattaaaca atttcggtgt agagtgtagt ataggtatgt ttggagaaac
      421 aatttttacc ttagtttctc ctaacgacat ttatcctgtt acctcaatgt tgaagaagtt
      481 tcctggcact ttgatagttt cagatattga taatcaagga gcgttgatag aaaattttga
      541 ttgaaacaaa tcatataccg tccaatcatc caagagcaaa atctcttgct ataagacaat
      601 tacttgctaa tggtttcaaa tctggtatgg tcgttagtga agggctaata gctcatggta
      661 ggggagaagc attcgattat cttattggtg aaaaaacttc taattttgct tttgatgcaa
      721 tcaaagcagc atcaagttta ttgttacttg ctaagagacc tgtaatatct gtaaatggaa
      781 atacagcagc attatgtcct agagacatcg ttgatctagc cgatgaaact aaatcaacaa
      841 tagaagttaa tctattctac agagataaaa aacgagaaaa tttaatcgca gaaactctaa
      901 aaaaaaatgg tgcgaacatt gttcttggag tgggtgaaaa agaatttcta caaataccag
      961 agctaactag taataggcga catgttgatc cggaaggaat atttctcgct gatgtcgttt
     1021 ttgtaccatt agaagacggt gaccgtacaa aggcattaat taatatgcaa aaaaaagtaa
     1081 ttacagtcga tctgaatcct ctttcacgaa cggcacagaa cgccacaata agtataatag
     1141 acaatattgt aagggctatt cccgaattgg ttaaaacttc aaaacaattg aaacaaaaga
     1201 gtcagaactc tctattaaaa atattgaata attttaataa taaatataat attgataatt
     1261 cattaaatat aatacgtaga tggaaatgtg agcaataatg actaagacta ataatgataa
     1321 caataacaac aacaacaata aaaatcaaaa aactgtagta aagaaattgg ttgttaacga
     1381 tattgtatcc atgaaaaata atgaaaaaat ttctgtcatt acatcttatg attattggag
     1441 tgcaaaaata tgtgataaaa caggtattga tattatattg gtcggtgaca gtggaggaat
     1501 ggttatgtta ggttatgatt ctactgtacc tgtatctatg aaagaaatgc taattttttc
     1561 aaaagcagta tacgtaggta ctaagagatc tcttatagta tctgatatgc cttttgggtc
     1621 atatcaaatt ggcataaaac atgcagttaa gaatgctatt cgattcataa aatcaggaag
     1681 tgatgcagtt aaacttgaag gtggaattga aattattgat agaattaagg caattattga
     1741 ggttggaatt cctgtaatgg gtcacatagg attaaaaccc caaactacta aactgtggga
     1801 gggatataaa gtacaaggca acacggctgt taggggctct caattactaa gagaagcaat
     1861 agaactagaa aaggccggag tttttgcaat tgtattggag atggt
//
LOCUS       DATCMF010000409         2253 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_517258, whole genome shotgun sequence.
ACCESSION   DATCMF010000409 DATCMF010000000
VERSION     DATCMF010000409.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2253)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2253)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2253
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_517258"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1135
                     /locus_tag="VIL14_05200"
     CDS             <1..1135
                     /locus_tag="VIL14_05200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="2-oxoglutarate ferredoxin oxidoreductase subunit
                     alpha"
                     /protein_id="HEY8523139.1"
                     /translation="DSEFLETNQVIEQIDGKKGSVLVIQTEDEISAITMAIGGALTGT
                     RTATATSGPGFSLMAEALGWAGINEVPLVVSLYQRAGPSTGLPTRHEQGDLLFAINAG
                     HGEFPRIVFASGDIEESFYDTLKVFNFAEIFQLPVIHLLDKAIASSVMTCKNFDPNKI
                     TIDRGYLIKKIENKAQDQEKLKHFKRFELKENAAISPRPSLGTENGIFWNTGDEHDEE
                     GHISEDPMVRIKMMDKRMSKLDLILQEIQDEDKALSYNGNSDIVITSWGSTKGAILDT
                     LDELNKEGIKIKFVQVKLLNPFPQQLLEKMLNSAKTIINIEMNYSSQLAKLIKQNLHR
                     DIDYEIVKYNGRPISCDELHRIIKEIVNNNNTDKRRIVLDYGT"
     gene            1125..2093
                     /locus_tag="VIL14_05205"
     CDS             1125..2093
                     /locus_tag="VIL14_05205"
                     /EC_number="1.2.7.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018491 - 2-oxobutyrate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0019164 - pyruvate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0047553 - 2-oxoglutarate synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:ferredoxin oxidoreductase subunit
                     beta"
                     /protein_id="HEY8523140.1"
                     /translation="MALKPADYKTEVHNDWCPGCGDFGILNAIQMSLAELAIPTHKAA
                     IFSGIGCSGKTPHFIHTYGIHTLHGRVLPFAQGAKLCNPELEVIAVGGDGDGLGIGVG
                     HFVNSGRRNIDLTYIIYNNGVYGLTKGQASPTLKLGMKTKSLTQPNVNDSINPIALAF
                     ISGFTFIARGYAYDIRHLKDLIVKAVQHKGLAFLDILQPCPTYNDINTKEWFQGLDNT
                     DQENRKATPRIYKLDSSGYNGELKNPDQYYEIASRVIEKSNEWGDRIPIGIFYQNENV
                     ASYDERIGMKIDNYLKYPPAKQEIILDKNKTNSNINELLKSFKVNA"
BASE COUNT          875 a          305 c          404 g          669 t
ORIGIN      
        1 agatagtgaa tttttagaga caaatcaagt aatagaacaa atagatggaa agaaggggtc
       61 agtattggta atacagacag aagatgaaat ttctgcaata actatggcca ttggtggtgc
      121 tttgactgga actagaactg caactgcaac ctctggacct ggtttttcac taatggcaga
      181 agccttggga tgggcaggta tcaatgaagt tcccttagta gtatcactat atcaaagagc
      241 aggtccatca acaggtcttc ctactagaca tgagcaagga gatttattat ttgcaattaa
      301 cgcaggtcat ggagaatttc ctaggatagt tttcgcatcg ggggatattg aagaaagttt
      361 ttatgatacg ttaaaagtat ttaattttgc agagattttt caattaccgg taattcattt
      421 actagataaa gcaatagcaa gtagcgtaat gacctgtaaa aattttgatc caaataaaat
      481 cactattgat agaggatatc ttattaagaa aattgagaat aaagcacaag accaggaaaa
      541 attaaaacat tttaaaagat ttgaattgaa agaaaatgca gcaatttctc ctcgaccatc
      601 acttggtaca gagaatggaa ttttttggaa tacgggtgat gagcatgatg aagaaggaca
      661 catttcagaa gatcctatgg ttagaataaa aatgatggat aaacgtatga gcaaactaga
      721 tttgatttta caggaaatac aagacgaaga caaagcttta tcatataatg gaaattctga
      781 tattgtaatt actagttggg gatccacaaa gggagctatt ctggacacct tagatgagtt
      841 aaacaaagaa ggaataaaaa taaaatttgt ccaggttaaa ttattaaatc cttttcctca
      901 acaattatta gaaaagatgt taaattcagc taaaacaatt attaacatag aaatgaatta
      961 ttcatctcaa ttagcaaagc ttatcaaaca gaatttgcat cgagatatag attatgaaat
     1021 agtaaaatat aatggtaggc ctatttcatg tgatgagtta catagaataa taaaggagat
     1081 agttaataat aataatactg ataagaggag aattgtttta gattatggca cttaaaccgg
     1141 cagattataa aacagaagta cataatgatt ggtgtccagg ctgtggggat tttggaatat
     1201 taaatgccat acaaatgtca ttagctgaac tggcaatccc tacacataag gctgctattt
     1261 tttcaggtat tggatgttca ggaaaaacac ctcattttat tcacacatat ggaatccata
     1321 cattacatgg tagagtcctt ccatttgctc aaggagctaa actgtgtaac cctgaacttg
     1381 aagtaattgc cgttggtgga gatggagatg gcctaggaat aggtgtagga cactttgtta
     1441 attccggaag aagaaacata gatttgacat atattattta taataatggg gtatatggat
     1501 taacaaaggg acaggcttcc cccacattga aactaggtat gaagacaaaa tcattgactc
     1561 aacctaacgt taatgattct attaatccaa tagcacttgc ttttatttct ggttttacat
     1621 ttatcgcaag aggttatgca tacgatataa gacatcttaa agatctgata gtaaaggctg
     1681 tacaacataa agggttagcc tttttagata ttctacaacc ttgcccaact tataatgata
     1741 taaatactaa ggagtggttc caaggactgg acaatactga tcaagaaaat agaaaagcca
     1801 cacctcgtat atataaatta gacagttccg gttataatgg agaattaaag aacccagatc
     1861 aatattatga aattgcttca agagttatag aaaaatcaaa tgaatgggga gatagaatac
     1921 ctattggaat attttatcaa aatgaaaatg ttgcatcata tgacgaaaga attggtatga
     1981 aaatagataa ctatttaaag tatcctcctg caaaacaaga aattatttta gataaaaata
     2041 aaacaaattc taatataaat gaattattaa aatcattcaa agttaacgca taaatcaata
     2101 cagataataa tcatacatca aaccacatta ttatattaaa atcaaatatt aattaatcaa
     2161 attttctaat caaacaaaca attataaaat ttttttcttt attgggcaga ttaaaatttt
     2221 ttcaaaaaaa ttaaaatgaa aaatgaggga tgt
//
LOCUS       DATCMF010000410         2093 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_581320, whole genome shotgun sequence.
ACCESSION   DATCMF010000410 DATCMF010000000
VERSION     DATCMF010000410.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2093)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2093)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2093
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_581320"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            73..573
                     /locus_tag="VIL14_05210"
     CDS             73..573
                     /locus_tag="VIL14_05210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CopD family protein"
                     /protein_id="HEY8523141.1"
                     /translation="MSIIDGFVIWIHLLSASIWVGGSIFIGIILAPMLKHIGNSMEER
                     VIIMIKIGRRFNNIAFPSFIILMSTGLYNSRFFFEYPYNFIETDYGILLLMKIVLVII
                     TFVSYIIHIKSFGKGTEAKIIENRGSEYINIIRSKIINYGRLTVILSIVILLLAAFLD
                     AGIKFS"
     gene            complement(566..1963)
                     /locus_tag="VIL14_05215"
     CDS             complement(566..1963)
                     /locus_tag="VIL14_05215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004421 - hydroxymethylglutaryl-CoA
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006084 - acetyl-CoA metabolic process
                     [Evidence IEA];
                     GO_process: GO:0010142 - farnesyl diphosphate biosynthetic
                     process, mevalonate pathway [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA synthase"
                     /protein_id="HEY8523142.1"
                     /translation="MPVGIDDMAIYVPKLYIDSKDFAIARGIDPHKLEIGIGIYKMAM
                     VDTNQDPACMAANACLKLMQKNDLKPQDIGRMYVATESALDESKAMNSFVIGMLEQIY
                     GDGSFEHAGGIECKFACVSGSYALYDNANWIRAEENNDRAAIVIVSDIAKYDLGSAGE
                     YTQGAGAIAMLVKENPRLVVFDPKVTSTIIKNEYDFYRPFGRETPLVNGSYSNYLYLI
                     QVKKAFDSYREKAIKTKLIQLQEDESITDKIDYISVHLPYRKMGEKALAYLLRHEWRC
                     LPRWKQIIEEVGMDEPTPKDPRGTIESILADKDFMKADDQFRKAFMRTSIFKQVFEQK
                     MASSLEASAIIGNLYTASMYMGLRSLLEFEYKKNIDLENKRIGFGSYGSGSSAMVFSG
                     VIQSTYKEIVKDMNLEKEIGNRSKLDMQEYIRLHSNEGKMNEPISNSNNEFVLVKIGG
                     NTADKAGLREYVFSN"
BASE COUNT          684 a          356 c          282 g          771 t
ORIGIN      
        1 tatcatatag cactataaca ctattaagat acattaaagt gattagatgg cttaaactaa
       61 cactgttgaa ctatgagtat aattgatggc tttgttatat ggattcactt attatctgca
      121 agcatttggg ttgggggatc aatatttata ggaataattc ttgctcccat gttaaagcat
      181 ataggaaatt caatggaaga aagagttatt attatgatta aaattggtag aagatttaac
      241 aatattgcat ttccttcatt tattattttg atgtcaacag gattatataa ttcaagattt
      301 ttttttgaat atccgtataa ctttattgaa acagattatg gaattttatt gttgatgaag
      361 attgtattag taattattac ttttgtgagc tatattatcc atatcaaaag tttcggaaaa
      421 gggaccgaag caaaaattat tgaaaataga ggatcagaat atattaatat aatacgttca
      481 aaaatcatta actatggaag attaactgtg attctctcta tagtaatctt attacttgcg
      541 gctttcttgg atgcaggtat aaaatttagt tagaaaaaac atattctctt aacccagcct
      601 tatcggctgt attaccacct atttttacta aaacaaattc attattagaa tttgaaattg
      661 gttcattcat tttcccttca tttgaatgaa gacgaatata ttcctgcata tccaatttag
      721 aacgattacc tatttctttt tctaaattca tatctttaac aatttccttg tatgtagatt
      781 gtataacacc actaaagacc atagcgctac ttccacttcc gtatgagcca aatcctattc
      841 ttttattttc caagtcaata tttttcttat attcgaactc taataaactt cttaatccca
      901 tatacatgga tgcggtgtaa agattaccta ttatagctga agcttcaaga gagctagcca
      961 ttttttgttc aaaaacttgt ttgaagattg aagtacgcat aaacgctttc ctgaactggt
     1021 cgtctgcttt cataaaatcc ttatcagcta aaatggattc aatggttcca cgaggatcct
     1081 taggagtagg ttcatccatt cctacttctt ctattatttg tttccatctg ggtagacatc
     1141 tccattcatg tcgtagaaga tatgctaatg ctttttcacc catttttcga taaggtaaat
     1201 gtacactaat ataatcaatt ttatcggtta ttgattcatc ttcttgcaat tgaattaatt
     1261 tagttttaat tgctttttct ctataactat caaaagcttt tttgacttga ataagataca
     1321 aataattaga ataacttcca ttaactaaag gagtttcacg tccaaaaggt ctataaaaat
     1381 catactcatt tttaattatt gtagaagtaa ctttaggatc aaaaacaact aatctgggat
     1441 tttcctttac taacatagcg attgcaccag ctccctgtgt atattctccc gctgatccta
     1501 aatcatattt tgcaatatca cttacaataa caatagcagc tctatcatta ttttcttcag
     1561 ctctgatcca attagcattg tcatataatg catatgagcc acttacacag gcaaacttac
     1621 attctattcc tccagcatgt tcaaaggatc catcaccata aatctgctca agcattccaa
     1681 ttacaaaaga attcatagct tttgattcgt ctaatgctga ctcagttgca acatacattc
     1741 taccaatatc ctgtggttta agatcatttt tttgcattaa ttttaaacaa gcattcgctg
     1801 ccatacaagc aggatcctga ttagtatcaa ccatagccat tttatatatt cctattccaa
     1861 tttccagttt atgaggatct atacctctag ctatcgcaaa atcctttgaa tcgatgtata
     1921 acttgggaac ataaattgcc atatcatcaa taccaacagg catataaaat tcaatttgct
     1981 aaaagacatt taaacgtact tgtgattact atcgagtttt tttactaaaa agtagtagtc
     2041 tatgttttat aaagttctat tacattatat gttaatctat gagattatgt att
//
LOCUS       DATCMF010000411         1956 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_581369, whole genome shotgun sequence.
ACCESSION   DATCMF010000411 DATCMF010000000
VERSION     DATCMF010000411.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1956)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1956)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1956
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_581369"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..187
                     /locus_tag="VIL14_05220"
     CDS             <1..187
                     /locus_tag="VIL14_05220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523143.1"
                     /translation="QSGLSLIFNGDSPFKDGQLETLDGIPEGGPIPNLPEAPQEFSPG
                     LDQELKSKFQNLMKNKI"
     gene            complement(555..1283)
                     /locus_tag="VIL14_05225"
     CDS             complement(555..1283)
                     /locus_tag="VIL14_05225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CbtA family protein"
                     /protein_id="HEY8523144.1"
                     /translation="MDSLSFLVVTLISGAIAGTIFGFINLVIVEPYLDKAIEIEVQNR
                     INANEKVNSEEHNNYRFWQKSGEVAAGAILGMAFGSLLGIVFAFGRKTLPGSNNLKKA
                     IILSGIIWLVIFMIPAIKYPANPPTVGDPDTISYRQYLFISFILISGTSALALSIIYK
                     KMKINPSLKLIIVSIIYTIIMIGAFVVVPPNPDEITAPKDLVNGFRIASMFTMGIFWI
                     ILGITFGLIWDKIRPHDPTQYKTV"
     gene            complement(1311..1526)
                     /locus_tag="VIL14_05230"
     CDS             complement(1311..1526)
                     /locus_tag="VIL14_05230"
                     /inference="COORDINATES: protein motif:HMM:NF021038.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CbtB domain-containing protein"
                     /protein_id="HEY8523145.1"
                     /translation="MSFLKQIQISEPNVPKAAVGLLIFILAFGLFIVGYDQGQLFSLV
                     QGEQAYNDLWVHEFSHDMRHAAGFPCH"
     gene            1663..>1956
                     /locus_tag="VIL14_05235"
     CDS             1663..>1956
                     /locus_tag="VIL14_05235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523146.1"
                     /translation="MLQKVYHQNITSRQLSFGIGHIFKALQLAKLNGHISRDLLKKEL
                     SLGQGSIKTLVKHLKTTNMIMTSNAGTILTDTGEKLISQILLYIPKETIIPKSS"
BASE COUNT          709 a          308 c          274 g          665 t
ORIGIN      
        1 acagtctggc ttatctttaa tatttaatgg agattctcct tttaaagatg gtcaactcga
       61 aacattggat ggaattcctg aaggaggacc aataccaaat ctaccagagg caccacaaga
      121 attttctcca ggattggatc aagaactaaa atcaaaattt caaaatctga tgaagaataa
      181 gatataaaaa atattatttt cttcatcttt tgattttgtt cttctttcat aatattttta
      241 atttcattat tgtggttagg gcctaatttt taaattcaaa aattgatgat gaaatgatct
      301 tataaatcta atatttttta atgacctatc aattaaatct tgctttaact gtagaagtga
      361 tggcataata tgtatctaca ttatagacta cattagagaa tttcttatag tatatatttg
      421 aaaattaatt gatatcaagt caaattagta atttaagatt aatttataat tggctatata
      481 tcatctaatc gttattttat ttttctagaa tttttttgct actacagctc ttaaagaaat
      541 aaaatgaaga tagattaaac agtcttgtat tgagtcggat catgtggtct tattttatcc
      601 catatcaatc cgaatgtgat tcccaaaata atccaaaaga tgcccattgt aaacatgcta
      661 gctattctaa atccatttac cagatccttt ggggctgtta tctcatctgg atttggagga
      721 acaactacaa aggcgcctat cattattatt gtataaataa tagaaactat aattagtttt
      781 aatgacggat ttatcttcat cttcttataa attattgaca atgctaacgc acttgtacct
      841 gatattaaaa taaacgagat aaacaaatat tgtctatagg atatagtatc aggatctcct
      901 actgtcggag gattggcagg gtatttgatg gccggaatca taaaaataac taaccatata
      961 attcctgata atattattgc ctttttaaga ttatttgaac caggtagagt ttttctacca
     1021 aaagcaaata ctattcctaa taaagatcca aatgccattc ctaatatagc accagctgct
     1081 acttctccac ttttttgcca gaaacgatag ttattatgtt cctcagaatt tactttctcg
     1141 ttagcattta ttctattttg tacttctatt tctattgcct tatctaaata aggttctact
     1201 attactaggt taataaatcc aaaaattgtt ccggcgattg caccggagat aagagtaacg
     1261 acgagaaaag ataagctatc cataatgatc acaaaagaag gaggaggaat ctaatgacat
     1321 ggaaatcctg cggcatgtct catatcatga gagaattcat gaacccaaag atcgttgtat
     1381 gcttgttctc cttgaacaag actaaaaagc tgaccttgat catatcctac aataaataaa
     1441 ccaaatgcta atatgaatat taataatccg acagcagctt tgggaacgtt aggctctgag
     1501 atttgtatct gttttaaaaa agacatatta ttgaatctta tgaaatcact aatatataac
     1561 agttgtctaa aatatccaac ccaattagtt aaactatgaa tacatttaca tacatcatac
     1621 tttattatta aaataaatta actgatgaag acttatttta aattgttaca aaaagtttat
     1681 catcagaata ttacctctag acaactctca tttggtatag ggcatatttt caaagcctta
     1741 caacttgcaa aacttaatgg acatattagc agagatttac ttaaaaaaga actttcacta
     1801 ggacaagggt ccattaaaac attagtcaaa catttgaaga ctacaaatat gataatgaca
     1861 agtaatgctg gtacaatttt aacagatacc ggagaaaaat taatttcaca aatactatta
     1921 tatatcccaa aggagacaat tattccaaaa agctct
//
LOCUS       DATCMF010000412         1574 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_119127, whole genome shotgun sequence.
ACCESSION   DATCMF010000412 DATCMF010000000
VERSION     DATCMF010000412.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1574)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1574)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1574
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_119127"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            324..491
                     /locus_tag="VIL14_05240"
     CDS             324..491
                     /locus_tag="VIL14_05240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523147.1"
                     /translation="MTNDENIIQIVMNTEEIGKNKCIPLSDKDYDKIKDYGDVRITII
                     RNNTKVPLGIP"
     gene            complement(849..1361)
                     /locus_tag="VIL14_05245"
     CDS             complement(849..1361)
                     /locus_tag="VIL14_05245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HEY8523148.1"
                     /translation="MTNRPKFCSNCGESLDQESTICSKCGIDLQQQQQQQQVGSTIQN
                     RPIVDPLPYKSPGTAALIAFIGGIFALLGLGHIFVGKIGKGFGILVSGIIIYVLFVIM
                     AISLPGMLLLGLVESSTGDAGSGGIIFIVMFILGIAYLVLWIWQIFNAKKLAKKFNEL
                     VRTNGGKEPW"
BASE COUNT          585 a          233 c          218 g          538 t
ORIGIN      
        1 tagatcaata gaatatctat tataattgct tataattcag atttattata tagtaattac
       61 ctaccaatct ctcaagtctg gaaaagtaaa agtgaaatga ccaaaattcc ttttactttc
      121 tctggaaaaa aatattagag aaactttgat ttatttattt aatgtgcttt gtgaatgtgc
      181 tcgtttagtt cttcttcttc ttcttcttat atatactata aaacgactat tataatgaaa
      241 ttcaaataaa aaataagact gttacaaaga agaaaacata aacattagta aataataata
      301 acttgttttt ttatggttat tcaatgacta atgacgagaa tataatacaa attgttatga
      361 atacagaaga gattggcaaa aataaatgta tacctctatc tgataaggac tacgataaga
      421 taaaagatta tggcgatgtg cggattacaa taattaggaa taatactaaa gtaccattag
      481 gtatacctta acctatgact aataaataga atataaaggg aaatagtgga gatattggag
      541 acaatctgtc tgtttaatta attgaatact ttattatgag atagtagaac ccacatttga
      601 tagataaagg ttcaaatccc ctcccctcca tgctggttat gcttaattct accatttcaa
      661 actcaaaaat aaaaaaacat tttttatttt atcgatttaa gccatgccaa aaaattaaac
      721 aaactaataa ttaagatgat aaaataacat ataatactac ttcctcctac ccattaaatt
      781 cataatatat tgtaattttt aagttgttag attaggaata acgaatagaa aagttttggt
      841 ttagattttc accatggttc ttttccacca tttgttcgta ctagttcatt aaatttcttc
      901 gctagttttt tagcattaaa tatttgccat atccaaagta ctaaatatgc aatacctaag
      961 ataaacataa caataaatat tatcccacca ctgcctgcat ctccagtaga tgattctacg
     1021 aggcctaaca ataacatacc tgggagagag attgccataa tgacaaacag aacataaatg
     1081 atgataccag aaactaatat tccaaatcct ttcccaatct ttccaacaaa tatatggcct
     1141 aggcctagta gagcaaatat tccgccgata aatgcaatga gtgctgctgt ccctggactt
     1201 ttgtagggca gtgggtctac aattggtcta ttttgtatag tagatcctac ttgttgttgt
     1261 tgttgttgtt gttgaagatc aattccacac tttgagcata ttgtactttc ttgatctaat
     1321 gactcaccac aattgctgca gaattttggt ctatttgtca ttcttatagg atgaaatata
     1381 gatttaaaga ttaataaaga ctcaaaaagg gaaaaaggaa taatactata gaatattctt
     1441 cattttctaa ctgttagata taaacaaaga agttagatat aaacaaagaa aattagataa
     1501 taagaaataa aaatttaatt cttttgtaaa gtgattcttg ttatttgttg ttcttctttc
     1561 caccacgtat acaa
//
LOCUS       DATCMF010000413         1915 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_449197, whole genome shotgun sequence.
ACCESSION   DATCMF010000413 DATCMF010000000
VERSION     DATCMF010000413.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1915)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1915)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1915
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_449197"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            299..1477
                     /gene="dinB"
                     /locus_tag="VIL14_05250"
     CDS             299..1477
                     /gene="dinB"
                     /locus_tag="VIL14_05250"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:NF002677.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003684 - damaged DNA binding [Evidence
                     IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase IV"
                     /protein_id="HEY8523149.1"
                     /translation="MANKKQWRGKAILHVDINSFYSSCEEIKNPSLKGKPHAVIMTPQ
                     DSNNITKGAVTTCSYEAKKLGIKSAMPLYKALELCPNLILHGVDKKFYEKISNEVMEI
                     LEDYADIFEQASIDEAYLDCTNKISTTEVMIEEYAKDIKKSIKEKCGGLLTSIGIAPT
                     KSVAKIASDYQKPDGLTIIHFNELKNFLNPLDVETISGIGIKTQKILKEQMNIKTIGQ
                     LSNTDVQLLIERFGKKIGTWMWQVANGLDNEPVLPRRNHISLSNESTLEFITYDKEII
                     KQSLYELIDELYERIKNNKYQFRTVGIKIMRTDFSVETREKSYIKYQSERKSIESLIE
                     EVLDKFDLEDNNLVIPSRKITRTFLPIRKVGLKVSNLVAIEKSNKDNEYKQKTLLDYC
                     "
BASE COUNT          779 a          245 c          272 g          619 t
ORIGIN      
        1 ctgtagtaat cagaatgtta tcactccaat ttttttactc tttaatggat atttttttgg
       61 gttcctcaaa aatttatact aaaataaaat ttgataatat aataaaatgg aaagatctaa
      121 tcaaattcta ttttattatc aacacataat tattgtgaat caatcaatta ttacaattcc
      181 atttttgata acttccatat atgcaataac tatacctttt aaacaaaaat tttatatgcc
      241 taaatgaaag tttaatctaa tctaatacca atcatttgag taatagaaag gtgtttatat
      301 ggctaataaa aaacagtgga gaggcaaagc aattttgcat gtcgatatta attcatttta
      361 ctcttcttgt gaagagatta aaaacccatc attaaaagga aaacctcatg cagttattat
      421 gacacctcag gacagtaata acattacaaa aggtgcagta acaacatgtt cttatgaggc
      481 taaaaaactt gggataaaat cagcaatgcc attatataaa gcattagaat tatgtcctaa
      541 tttaatatta catggagtag acaaaaaatt ctatgaaaag atatcaaacg aggttatgga
      601 aatattagaa gattatgcag atatttttga acaagcaagt atagatgaag catatttaga
      661 ctgtacaaat aaaatttcta ctacggaggt aatgatagaa gaatatgcta aagacattaa
      721 aaaatctata aaagaaaaat gtggcggctt actaacgtct ataggtatag caccaacaaa
      781 atcagttgca aaaattgcct ctgattatca aaaacctgac ggtcttacta taatacattt
      841 taatgaatta aaaaattttc tcaatccatt agatgttgaa acaatttcag gaataggaat
      901 caaaacacaa aaaattctaa aagaacaaat gaatatcaaa actataggtc aactatcaaa
      961 tacagatgtt caacttctta tagaaagatt tggaaagaag ataggaacat ggatgtggca
     1021 agttgcaaat ggtttagaca atgagccagt tcttccacgc agaaatcaca tatctttaag
     1081 caatgaatct acattagaat ttataacata tgataaagag ataataaagc aatccttata
     1141 cgagttgatt gatgaacttt atgaaaggat aaagaacaac aaatatcaat ttagaaccgt
     1201 tggaataaaa ataatgagaa ctgattttag tgttgaaact agagaaaaat cttatatcaa
     1261 atatcaaagc gaaagaaaaa gtatcgaatc cctgatagaa gaggttttag ataaatttga
     1321 tttagaagac aataatttgg tcattccttc gagaaaaatt actagaacat ttttacccat
     1381 aagaaaagta ggattgaaag tatcaaattt ggtagcaata gaaaaaagta ataaagacaa
     1441 tgaatacaaa caaaagacat tattagatta ttgttagaca ttataaccaa actaacacta
     1501 atagtttaaa taattcagtt attgttttgt tcaataatat tatacatatt gtataagata
     1561 ttactccatt gtagatagtt atagtatgcc tctgatattt aatatataat gttaaaaaat
     1621 agtatcagta agatttgaac tcgtccataa atgggaattc agttattcgt atttgtttat
     1681 ttttgttgga tattgttcta tttattatca tcataattgt tataagaatc atccttatcc
     1741 actttcttga gccattgcat ttgtaaagtt attcatgtta gcaaacgaca ctacattatc
     1801 aaggagccca ttaaaataga ctgctaatgg ggttattgct gacctatata tgtcattttt
     1861 aaacaattaa gatataattg aaactggtag aatacatttg ctaaaatatt acttc
//
LOCUS       DATCMF010000414         3310 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_384603, whole genome shotgun sequence.
ACCESSION   DATCMF010000414 DATCMF010000000
VERSION     DATCMF010000414.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3310)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3310)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3310
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_384603"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..604
                     /gene="rfc"
                     /locus_tag="VIL14_05255"
     CDS             <1..604
                     /gene="rfc"
                     /locus_tag="VIL14_05255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018214.1"
                     /note="Part of the RFC clamp loader complex which loads
                     the PCNA sliding clamp onto DNA; in Methanosarcina and
                     Methanococcoides the RFC clamp loader is made up of 2
                     similar small subunits and one large subunit; the proteins
                     in this cluster are small subunit 1 which is necessary for
                     clamp loading activity; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="replication factor C small subunit"
                     /protein_id="HEY8523150.1"
                     /translation="LRRIIEDSSKTTRFIIICNYLSQIIEPIQSRCAIFHFTRLEEND
                     VGEYLRMICNQEKVDFQEEALSKIYRYTEGDLRHSINILQTASGYGQVSIKNVTSAIG
                     LSGKSKVGEIIRLALLGKFNDARIRLLELLYAYGLSDTDFFKYAYQEIKDLDIKNIDE
                     VMSIMAEYDYRLSVGAHSEIQLTAFLAQLCKIGSDIKLKK"
     gene            668..1408
                     /locus_tag="VIL14_05260"
     CDS             668..1408
                     /locus_tag="VIL14_05260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase"
                     /protein_id="HEY8523151.1"
                     /translation="MKFKTKKNKIISFSTAAVCIVSGGIDSVCTAAYLKKQNFDLYII
                     TFRYGQRANLEIEYAKKFAKYLDSKEHKIVDISFMKDIYGETNILTDDKQKIPKNFKY
                     SIIAPIRNAIFITIATAWAMNIGAKIIAYGAHTGDNNYPDCRPEFTKSISKTLNLGDI
                     DGISSGLRKKISIWSPAIDGFDKSKIIRIGYEILGHKIFETWSCYSNGIDTKDGKKIH
                     CGICESCINRRRAFRKVSIDDKTEYANK"
     gene            1380..2126
                     /locus_tag="VIL14_05265"
     CDS             1380..2126
                     /locus_tag="VIL14_05265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HEY8523152.1"
                     /translation="MTKQNMPISEKKIQLSEIFTSIEGEGILFGTKTMFVRMAGCHLK
                     CYWCDTSYALAMNSGNTYPINEVKKMIKDHLQNNTYKINFTGGEPLIQYEAVKDLAKF
                     IKEELGLRTYIESSCYDVDRFNKIISYIDICKIEFKTMDSQAVDIKHYRYLLNNEIEC
                     LKTAIDNKKITFIKIVVSNSTSIKEFRELIEVIFNTIKCDDLAGFIIQPTSTINEPTV
                     NKLLQFYDLVYPIYNEVRIIPQLHKIIGAR"
     gene            2134..2727
                     /gene="folE"
                     /locus_tag="VIL14_05270"
     CDS             2134..2727
                     /gene="folE"
                     /locus_tag="VIL14_05270"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003934 - GTP cyclohydrolase I activity
                     [Evidence IEA];
                     GO_process: GO:0042559 - pteridine-containing compound
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0046654 - tetrahydrofolate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HEY8523153.1"
                     /translation="MTNSRVQKTGTINKNKIEKLIRQLLVELGENPNREGLIGTPKRI
                     AEMYEEIFSGYKMNSELDVSFSEETNAIIARDIQFYSMCEHHMLPFYGRIHIAYVPNG
                     KVFGLSKLVRLAEKYSRRMQIQERLTTEIADEVSKRGVSGVIVIAEGEHLCMKMRGVR
                     NNNSIMTIAYRGVFEEKGIRENILNLIYTRQNNIINL"
     gene            2850..3119
                     /locus_tag="VIL14_05275"
     CDS             2850..3119
                     /locus_tag="VIL14_05275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523154.1"
                     /translation="MADANFRVQSHKFTQDNIQATLVCSKCDEIFSKEFLLDLEGQTI
                     EFKCPVCGVSGEADLPYKTAEEREEFDDDLDEVEEDTFDEFEEDY"
BASE COUNT         1355 a          346 c          567 g         1042 t
ORIGIN      
        1 tttaagaaga ataattgaag atagttctaa gactactcgc tttattatta tatgtaatta
       61 tctttctcag attatagagc ccatccaaag tagatgcgca atatttcact tcacaagact
      121 ggaagagaat gatgtaggag aatatttaag aatgatttgt aatcaggaaa aggtagattt
      181 tcaggaagaa gcattatcaa aaatttacag atatacagaa ggggatttga gacattcaat
      241 aaacattctt caaacagctt caggatatgg acaagtttca attaaaaatg taacatctgc
      301 aattggactt tctggtaaat caaaagtagg agaaataata cgattagcat tattaggtaa
      361 atttaatgat gcacgtataa gacttttaga attattatat gcatatgggt tatctgatac
      421 tgactttttc aaatatgctt atcaagaaat taaagatttg gatataaaga atattgatga
      481 agttatgtca ataatggctg aatatgatta taggctttcg gttggggcac attccgagat
      541 tcaattaact gcatttcttg cacaattatg taaaattgga tctgatatta aactaaaaaa
      601 atgacccaaa cttagaaaga agaaattcta tcatttttct gtaaataaaa aaggattatt
      661 attgataatg aaatttaaaa cgaaaaaaaa taaaataatt tcattttcta ctgcagcagt
      721 atgcattgtt agtggtggaa ttgattctgt ctgtactgca gcttatttga aaaagcaaaa
      781 ttttgatcta tacatcatta cttttagata tggtcaaaga gcaaatttag agattgaata
      841 tgcaaagaaa tttgctaaat atttagattc aaaagaacac aaaatagtag atatatcatt
      901 tatgaaagac atttacggcg aaactaatat tcttaccgat gacaaacaaa aaattcctaa
      961 aaattttaag tatagtataa tagctcctat aagaaatgca attttcatta ctatagctac
     1021 agcttgggca atgaatatag gagcaaaaat aattgcctac ggagcacaca caggagataa
     1081 taattatcct gattgtagac cagaatttac aaaatcaata agtaaaactt tgaatcttgg
     1141 agatattgat ggaataagtt caggtttgag aaaaaagatt agcatatggt caccggctat
     1201 agatggattt gataaatcaa aaataataag aataggttat gaaatcttag gacataaaat
     1261 ttttgaaaca tggagctgct attcaaatgg tatagataca aaagatggta aaaaaataca
     1321 ttgtggaatt tgtgaatcgt gtataaatag aagaagagct tttagaaagg ttagcataga
     1381 tgacaaaaca gaatatgcca ataagtgaaa agaaaataca attaagtgaa atatttacaa
     1441 gtatagaagg agaagggata ttatttggaa ctaagacaat gtttgttaga atggcaggat
     1501 gtcatttaaa gtgttattgg tgtgatacta gttatgcttt ggcgatgaat agtggaaata
     1561 catatccaat caatgaagta aaaaaaatga taaaagatca tttgcaaaat aatacatata
     1621 aaattaattt tactggtgga gagccattaa ttcaatacga ggcagtaaag gatttagcaa
     1681 aattcattaa ggaagaatta ggtttaagaa catatattga atcttcttgt tatgatgttg
     1741 atagattcaa taaaattatt tcttacattg atatctgcaa gatagaattt aagacaatgg
     1801 actcccaagc tgttgatatt aaacattata gatatctatt aaataatgaa atagaatgtt
     1861 taaaaactgc aatagacaat aaaaaaatca cttttataaa aattgtagta tctaattcca
     1921 catctattaa agaatttaga gaattgatag aagttatttt taatactata aaatgtgatg
     1981 acttagcagg atttataata cagccaactt ctacgataaa tgaaccaact gtgaataaat
     2041 tattgcagtt ttatgacctt gtttatccaa tatataacga agttcgtata attcctcagt
     2101 tgcacaaaat aataggagca agataactaa aagatgacaa atagcagagt acaaaaaact
     2161 ggaacaataa ataaaaataa aattgagaaa ttaattagac agcttttggt cgaattagga
     2221 gagaatccca atagagaagg attaatagga acaccaaaac gtattgctga aatgtacgaa
     2281 gaaattttct ctggatataa aatgaattca gaattagatg ttagttttag tgaagaaact
     2341 aatgcgataa tagctagaga tatacaattt tatagcatgt gtgaacacca tatgcttcct
     2401 ttctatggaa gaattcatat tgcttatgtt ccaaatggca aagtatttgg actgtcaaaa
     2461 ttagttagat tagctgagaa atattcaaga agaatgcaaa ttcaggaacg attaacaact
     2521 gaaatagcag atgaagtatc taaaagagga gttagtggag taattgttat agctgaagga
     2581 gaacatctgt gcatgaagat gagaggagtt agaaataata attcaataat gactatagca
     2641 tatagaggag tatttgaaga aaaagggata agagaaaata ttcttaattt aatttatact
     2701 agacaaaata atataattaa tttataaaat aacgaattac ttaaaatatt aatcacataa
     2761 aaatacaaag tttgtttttt atttaaattt acataatatt tttataatga aaggcttata
     2821 atgaagtaaa ttttctatag gtaagaagaa tggctgacgc gaactttagg gtccagtctc
     2881 ataaatttac tcaagacaac attcaagcta cattagtttg ttcaaaatgt gatgagatat
     2941 tttccaagga atttttattg gatctggaag ggcaaaccat agaatttaaa tgtcctgttt
     3001 gtggagtttc aggtgaagct gatttacctt ataaaacagc agaagaaaga gaagaatttg
     3061 atgatgattt agatgaggta gaagaagata catttgatga atttgaggaa gattattaaa
     3121 tgatctaata attgcaatat ttagtacata tgttattttt caatttaatt attaagatag
     3181 gcaaatttgc taaaagtgta aaattgtcag gttatattta ttaggttttc tcaatcaatt
     3241 agtaataaat gtatattcat taataaaaaa attatggaaa gaaaagaaat aacaaatgaa
     3301 attagtttaa
//
LOCUS       DATCMF010000415         1688 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_582505, whole genome shotgun sequence.
ACCESSION   DATCMF010000415 DATCMF010000000
VERSION     DATCMF010000415.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1688)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1688)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1688
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_582505"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..664
                     /gene="tfb"
                     /locus_tag="VIL14_05280"
     CDS             <1..664
                     /gene="tfb"
                     /locus_tag="VIL14_05280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018852.1"
                     /note="stabilizes TBP binding to an archaeal box-A
                     promoter; responsible for recruiting RNA polymerase II to
                     the pre-initiation complex; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transcription initiation factor IIB"
                     /protein_id="HEY8523155.1"
                     /translation="KDASGKPLSSSMKSTIERLRTWDSRSQVHEPVDRNFRQAFSELD
                     RLKDKLAVGDAVIEKAAYIYRKALEKGLVRGRSISALVAAALYAACRDTETPRTLKDI
                     ANASNIKKKDVARCYRLLIRELDLRMPVVDPVKCVARIASKAGLSEKTKRKALEILKK
                     AEEGKISAGKDPMGLAAAALYVACVMNGENKTQKDVAEAAGVTEVTIRNRYKGLKTHL
                     KL"
     gene            739..>1688
                     /locus_tag="VIL14_05285"
     CDS             739..>1688
                     /locus_tag="VIL14_05285"
                     /inference="COORDINATES: protein motif:HMM:NF012706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEY8523156.1"
                     /translation="MSRFTNFFCIILISFFFFLVFQVSFVFSTQEESKKQNYSNIENV
                     RFIHYLDENVAIEEIRSKNLDTYFFRIPLDLVSDIKNDISIKLFDKIGGSFGILLNPS
                     PSSNNDTINPFEFRDIRFAINFLINRNFISNEVLHGYGIPMADPFGLFSPDYPVVMDT
                     VESFGFHYDPDYAFKQINKTLLAHGAQLKNDKWYFNDKPIRLKILIRSDDLQRKILGE
                     LVSSELEQLGFTIIKDYSDLNKAVTLTQGSDPQKFLWHVYTEAFAGSTSFIKYNDAVL
                     AQMYSPWYANMPGNQNPGFWQYQNSTLDKITQKLVFSNFSS"
BASE COUNT          595 a          257 c          299 g          537 t
ORIGIN      
        1 caaagatgct tctggtaaac cactttcctc ttccatgaaa agcactatcg aaaggcttag
       61 aacatgggat agcaggagtc aggttcatga accagttgat cgtaatttta gacaagcttt
      121 tagtgaatta gataggttaa aagacaaact ggcagttgga gacgccgtaa tagaaaaagc
      181 tgcgtatatt tatagaaaag cgttagaaaa aggattagta agaggcagat ctatttctgc
      241 tctcgttgca gctgcattat atgctgcctg tagggataca gaaacaccaa gaacgctaaa
      301 agatatagca aatgcaagta atatcaagaa aaaggatgtt gcacgttgtt atagactttt
      361 aattagagag cttgatctaa gaatgccagt tgtagatcca gtaaaatgtg ttgcaagaat
      421 tgcgagcaaa gcaggattgt ctgaaaaaac taaacgcaaa gccctagaaa ttcttaaaaa
      481 agcagaggaa ggtaaaattt cagcagggaa agatccaatg ggtctagcag cagctgcatt
      541 atatgttgca tgcgttatga atggagaaaa taagacacaa aaggatgtag cagaggcagc
      601 aggagttacc gaggtaacta ttaggaatcg ctataaagga ttaaaaactc atctcaaact
      661 ttaactaatt ttttaatcag aatataaaga ataatttttg ttattgtaag taaacccatt
      721 ttataatgaa gattaattat gagtagattt actaatttct tctgtatcat tctgatctcc
      781 ttttttttct tcctggtctt tcaggtatct tttgtatttt cgactcaaga agaatcaaaa
      841 aaacaaaact attctaatat tgagaatgta agatttatcc attacttgga tgaaaatgtt
      901 gctattgagg aaataagatc taaaaatttg gatacatatt tttttcgtat tcctcttgac
      961 ttggtttcag atataaaaaa cgatattagt atcaaactat ttgataaaat tggaggttca
     1021 tttggaattt tgttaaatcc ttctccatca tcaaataatg ataccataaa tcccttcgaa
     1081 tttcgtgata ttagatttgc tataaatttt ttaataaacc gaaattttat ttcaaatgag
     1141 gtattacatg gttatggaat tccaatggct gatccttttg gtcttttctc tcctgattat
     1201 cctgtggtaa tggacactgt tgaatcattt ggcttccatt acgatccaga ttatgcattc
     1261 aaacaaatta ataaaacttt gctagcacat ggtgctcaat taaaaaacga caaatggtat
     1321 tttaatgaca aacctattag attaaaaatt ttaataagaa gcgatgatct tcaaaggaaa
     1381 attctaggag aattagtttc ttcagaactt gaacaattgg gttttacaat tataaaggat
     1441 tatagcgacc taaataaagc tgttaccctt acccaaggat cggatccaca aaaattttta
     1501 tggcatgtat atacggaagc atttgctgga tccacgtctt ttattaagta taatgatgca
     1561 gtccttgctc aaatgtattc cccatggtat gctaacatgc caggaaatca aaatcctgga
     1621 ttttggcaat atcagaattc tacattggat aaaataactc aaaaattagt cttctcaaac
     1681 tttagctc
//
LOCUS       DATCMF010000416         2190 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_120230, whole genome shotgun sequence.
ACCESSION   DATCMF010000416 DATCMF010000000
VERSION     DATCMF010000416.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2190)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2190)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2190
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_120230"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..352
                     /gene="pfdA"
                     /locus_tag="VIL14_05290"
     CDS             <1..352
                     /gene="pfdA"
                     /locus_tag="VIL14_05290"
                     /inference="COORDINATES: protein motif:HMM:TIGR00293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="prefoldin subunit alpha"
                     /protein_id="HEY8523157.1"
                     /translation="EVLERESTVTKLIEEARLASYALQNIPLDKENEALMPIGVGVYL
                     KTNIPSIDKLLVNIGAGVTIEKTHQDTLHYIESRMKEFEIGLNQLREQKKQITSQLEQ
                     IQHQVNSMLQQQTS"
     gene            424..1983
                     /gene="ftsY"
                     /locus_tag="VIL14_05295"
     CDS             424..1983
                     /gene="ftsY"
                     /locus_tag="VIL14_05295"
                     /inference="COORDINATES: protein motif:HMM:TIGR00064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005047 - signal recognition particle
                     binding [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HEY8523158.1"
                     /translation="MFDKLKKAFSNIISDISKKEISEKDLENTLFDLEIALLESDVAQ
                     EVIDDISANLKNKLLGLSVEKDKTPEELIQFHVQKSIYEILTKSGTLDLVKEINSKKE
                     NKGSPFIIVFLGINGTGKTTTVAKVANLLHKNGLSVVLAASDTHRAGAIEQLGEHARR
                     LSLKMIHQRYGADPSAVARDAVEYGKKHRVDAILIDTAGRMQTAKNLMDEISKIVQVV
                     KPDLKIFIGDSLAGNDAIHQAKEFFAYTKFDASILTKTDADAKGGAIISITYLTSKPI
                     IYLGVGQNYDDIIPFDLKTFIESLFGSQISQEITNNYSSNIINESRNNEKLPDIKSKN
                     ISNNEPIHNIEELYQNKPPPPPPSSSNLDPIISNNINNDDSAISKVEVKEVEKKVDDL
                     RNSNIINLENEPKFDKSEKVTEKKEDSKIPLSSEKHFVTKEVAENKDEKKKGFFSSLF
                     GKRKSQVNSDKVSSTADEKNKQNNQDKPNSDKNQDNTINKNEMSEKNKNKDKNEVKYL
                     SDDDLDELLKE"
     gene            1964..>2190
                     /locus_tag="VIL14_05300"
     CDS             1964..>2190
                     /locus_tag="VIL14_05300"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019894.1"
                     /note="catalyzes the formation of L-citrulline from
                     carbamoyl phosphate and L-ornithine in arginine
                     biosynthesis and degradation; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HEY8523159.1"
                     /translation="MNSLKNKHILSLQDLDLNEIISILDFATNLKKETNNRSSRKLLE
                     GRTLGMIFQKPSTRTRVSFETGMFQLGGHAI"
BASE COUNT          906 a          308 c          335 g          641 t
ORIGIN      
        1 tgaagtatta gaaagagaat ctacagttac aaaattaatt gaagaagctc gtcttgcctc
       61 atatgctctc caaaatattc ctctagataa agaaaatgaa gcattaatgc cgattggagt
      121 aggagtatat ttaaaaacaa atattccttc aattgataaa ttattggtta atattggtgc
      181 tggagttaca atagaaaaaa cacatcaaga tactctacac tatatagagt caagaatgaa
      241 ggaatttgag attggcttaa atcaattaag agaacagaag aaacaaatta cttctcaact
      301 tgaacagatc caacatcaag tgaattctat gttgcaacaa caaacttcat aatatattta
      361 ataaatgcaa aaaagaaaac ataatacact gcaatttaaa ttattttttg tgtatgagta
      421 tatatgtttg ataaattaaa aaaagctttt tcaaatatta tttctgatat cagtaaaaaa
      481 gaaatttctg aaaaagacct tgaaaatact ctatttgatc ttgaaattgc attgctagaa
      541 agtgatgtag ctcaggaagt tatagatgat atctctgcta atttgaaaaa taaattattg
      601 ggtctctctg ttgaaaaaga taaaacacca gaagaattaa ttcaatttca tgtccaaaaa
      661 tctatttatg aaattcttac taaatcaggg actctggact tagttaagga aattaattcc
      721 aaaaaagaaa ataaaggaag cccatttata atagtttttc taggaattaa tggaactgga
      781 aaaactacta ctgtagccaa agttgctaat cttctacata aaaatgggtt gtccgttgta
      841 ttagcagcaa gtgatactca tagagcaggt gctatagaac aactaggtga gcatgctaga
      901 agattatcac tgaaaatgat tcatcaaaga tatggagcgg atccatctgc agttgcaaga
      961 gatgcagttg aatatggaaa aaaacacaga gtagatgcaa ttctaattga tactgctgga
     1021 agaatgcaaa ctgcaaaaaa tctcatggat gaaattagta aaattgttca ggttgttaaa
     1081 cctgatttga aaatttttat aggagattct ttggcaggaa atgatgcaat acatcaagca
     1141 aaagaattct ttgcctatac taaatttgat gcgtcaattt taacaaaaac agatgctgat
     1201 gcaaaaggag gggctattat ttcaattaca tatctcactt ctaaacctat tatttatctt
     1261 ggagtaggcc aaaactatga tgatataatt ccatttgatc ttaaaacttt catagaatca
     1321 ttgtttggtt ctcaaatttc acaagaaatt acaaataact atagttctaa tattataaat
     1381 gaaagtcgaa ataatgaaaa gttaccagat atcaaatcca aaaatatctc taataacgaa
     1441 cctattcata atattgaaga attatatcaa aataaacctc ctcctcctcc tccttcttct
     1501 tccaatttag atcctattat tagtaataac ataaataatg atgatagtgc aatatctaaa
     1561 gttgaagtaa aagaagtaga gaaaaaagtt gatgacctaa gaaatagtaa tattattaac
     1621 ttagaaaatg aaccaaaatt tgataaatct gaaaaagtga ctgaaaaaaa ggaagattct
     1681 aaaattcctc ttagtagtga gaaacatttt gttaccaaag aagtagcaga aaacaaagat
     1741 gaaaagaaaa aaggtttctt ttcttcatta tttggtaaac gaaaatccca agtaaatagc
     1801 gataaagttt catcaacagc tgatgaaaaa aataaacaaa ataatcaaga caaacccaac
     1861 tcagacaaga accaagacaa tactataaac aagaacgaaa tgtccgaaaa aaacaaaaat
     1921 aaagacaaaa acgaagttaa gtatctttca gacgatgatt tagatgaact ccttaaagaa
     1981 taaacatatc cttagcttac aagacttgga tctaaacgaa attatctcga tattggattt
     2041 tgcaactaat cttaaaaaag aaacgaacaa tcgatcatct agaaaattac ttgaaggtag
     2101 aacattggga atgatttttc aaaaaccgtc aacacgtact agagttagtt ttgaaacagg
     2161 tatgtttcaa ctaggcggtc atgctatctt
//
LOCUS       DATCMF010000417         3608 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_385012, whole genome shotgun sequence.
ACCESSION   DATCMF010000417 DATCMF010000000
VERSION     DATCMF010000417.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3608)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3608)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3608
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_385012"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1513
                     /locus_tag="VIL14_05305"
     CDS             <1..1513
                     /locus_tag="VIL14_05305"
                     /inference="COORDINATES: protein motif:HMM:NF013077.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SagB/ThcOx family dehydrogenase"
                     /protein_id="HEY8523160.1"
                     /translation="DWENKPFPFKIYLNKPKIDLPSTFPYPIEDSIECLKKQINLNPS
                     EQKQIDLKILSQILFFSAGITRKMNLNDTVYYMRAASATGALYPIEIYLVCQKIQNLD
                     AGVYHFCPANFTLTQLRKGDFRSILFTATGNNNKIIQAPITLIFTSIAWRNSWKYQAR
                     SYRHWFWDAGVILANFLALCNNNLFSSEIILGYQDELINNLLGVQNQKEAAIALATIE
                     SYYNYTNHEQSSSTTQLTPINCETKPLSKYEETVYPDIWKIHNSSNLNSHIEITNWTS
                     MKNNEYINLNKIRKMSHGKINTINKYNIGNVILQRGSTRRFSKKPITLMQLQNILYLS
                     SISIPFDFITHEQSMIDIYFIANSVTNLHSGIYYYNKLENNIQEIEKGDFREKSGHLC
                     LDQKLFSDASVVFFLLANMDTILKYLGNRGYRAVQLEGGICAGKIYLASYSHGLGASG
                     STFYDDEVTETFLPHSNQKSTIIAIGIGIPAYVAKSGKIYTNVLNKENYSKKI"
     gene            1548..2522
                     /locus_tag="VIL14_05310"
     CDS             1548..2522
                     /locus_tag="VIL14_05310"
                     /inference="COORDINATES: protein motif:HMM:NF012517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0070967 - coenzyme F420 binding [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03560 family F420-dependent LLM class
                     oxidoreductase"
                     /protein_id="HEY8523161.1"
                     /translation="MTKLKFGLTIPQGWWSDLPTNDPIKQYEFSKKISRSADRLNFYG
                     LYAYDHFIPHHEYNINNSFFECFTLLSSISSITKKIRLGQIVTCNSYRNPALLAKVLS
                     TLDVISKGRVELGIGAGWYQNEYYSYGYNFPSNVERIKQLDESISIIKAMWQDERASF
                     HGSYFSINEAICRPNPIQKPHPPIIVGGTGEKYLLKIVAKHADTYNNPFGSPADIRKK
                     LAALKEHCHDLRKSYNDIELSVLLPCIIKESEKDVIVEINKWKKKNENISAFLERKSG
                     GYTIGTPEKILAGIQQYINLGITHFILNFIGLEEDTLHLFDSRVIKKL"
     gene            2702..3265
                     /locus_tag="VIL14_05315"
     CDS             2702..3265
                     /locus_tag="VIL14_05315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methane monooxygenase/ammonia monooxygenase
                     subunit C"
                     /protein_id="HEY8523162.1"
                     /translation="MAQMPALIPKEVEIQRLKKIYIMVIMLGSIAASVEVDNFVDGSL
                     HQTAIRDSAFTPAHWWLYSHFIALPLGWGFVAMYDRRVPVLRGPNNSMNTGLKITIIG
                     YLATMFTIGINEMWHFWFVEEIFSVPNHWMFNMGVVVAFMGALAYVVRVYARLVELGA
                     ETPGKNPYVAEMYKLALEGKLYSRSIP"
BASE COUNT         1372 a          519 c          536 g         1181 t
ORIGIN      
        1 agattgggaa aataaaccgt ttccatttaa aatatattta aataaaccaa aaatagattt
       61 accatctact tttccctatc ctattgaaga ttcgattgaa tgtttgaaaa aacaaataaa
      121 tttgaatcca tctgagcaga aacaaataga tctaaaaatt ttatctcaga tactcttttt
      181 ttctgcagga attacacgga aaatgaactt aaatgatact gtatactata tgcgggcagc
      241 ctcagccact ggtgctttat acccaattga aatttattta gtttgtcaaa agatacaaaa
      301 tctcgatgca ggcgtatatc acttttgtcc agcaaatttt acattaactc agttaagaaa
      361 aggagatttt agatcaatac tatttacagc taccggaaat aataataaaa taattcaagc
      421 tccaattacg ttaattttta cttccatagc ttggagaaat tcatggaaat atcaagcacg
      481 ttcatatcgg cactggtttt gggacgcagg tgtaattctc gccaactttt tagctctatg
      541 taacaataat cttttctctt ccgaaattat tctaggttat caagatgaac tcattaataa
      601 tttactagga gtacagaatc aaaaagaagc tgctatagca ttagctacaa ttgaaagtta
      661 ttataattat actaaccatg aacaatctag ttctactact caacttacac ctataaattg
      721 tgaaactaaa cccctttcaa aatatgaaga aacggtatat cctgatatat ggaaaattca
      781 taactcttct aatctcaata gtcacataga aataacaaac tggacttcaa tgaaaaataa
      841 tgaatatata aatttaaata aaataagaaa aatgtctcat ggtaaaatta atactattaa
      901 caagtacaat attgggaatg taattttaca acgtggatca acaagaagat tttcaaaaaa
      961 gcctataacc ctaatgcaac tacaaaatat tttatatctt tctagtatca gtataccttt
     1021 tgattttatt acccatgaac aaagtatgat tgatatttac tttatagcaa attctgttac
     1081 aaatttacat tctggtatat attattataa taaattagaa aataatatac aagagatcga
     1141 aaaaggtgat tttagagaaa aatctggaca tttgtgtcta gatcaaaagt tatttagtga
     1201 tgcaagtgtg gtattttttc tcttagcaaa tatggatacg atattgaaat atttgggaaa
     1261 tagaggttat cgagctgtcc aactcgaagg tgggatatgt gctggaaaaa tatatcttgc
     1321 ttcatattct catggattgg gagcttctgg ttcaaccttt tatgatgatg aagtaacaga
     1381 aacttttctt cctcattcaa atcaaaaaag tacaataata gctataggta taggtattcc
     1441 ggcatatgta gctaaatctg gaaagatcta tactaacgta ttaaacaaag aaaactattc
     1501 taaaaaaatt taattattaa caatagtaat aaaaaagaat aacaataatg acgaagttaa
     1561 aatttggatt gacaatccca caaggctggt ggtcagatct accgacaaat gatcctataa
     1621 aacaatatga attttccaaa aaaatttcaa gatcagcaga tagactaaat ttctatggtt
     1681 tatacgccta tgatcatttt attccacatc atgaatataa tataaataat agtttttttg
     1741 aatgttttac actattatct tcaatttctt ctatcaccaa aaaaattaga ttggggcaaa
     1801 ttgttacttg caattcttac cgtaatcctg cattattagc aaaggtcctt tcaaccctag
     1861 atgttatttc taaaggacgg gttgaattag gaataggagc aggatggtat caaaatgaat
     1921 attactcata tggatataac tttccttcta acgtagaaag aattaaacaa ttagatgaat
     1981 ccatatccat aataaaggca atgtggcaag atgaaagagc ttcatttcat ggtagttatt
     2041 tttcaattaa tgaagctatt tgcaggccga atcctataca aaaacctcat cctccaatca
     2101 ttgtaggtgg aacaggagaa aaataccttt taaaaatagt agcaaagcat gctgacacat
     2161 ataataatcc atttggtagt ccagcagata taagaaaaaa acttgcagct ttaaaagaac
     2221 attgtcatga tttgagaaaa agttataatg atatagagct ttctgtatta cttccatgta
     2281 ttattaaaga atcagaaaaa gacgttattg tagaaataaa taaatggaag aaaaagaatg
     2341 aaaatatttc tgcttttttg gaaagaaaaa gcggaggtta tacaattgga acgcctgaaa
     2401 agattttggc aggaattcaa caatatatta atctagggat aacacacttt attctaaatt
     2461 ttataggttt agaagaagac acacttcatc tatttgattc tcgagttatt aagaaacttt
     2521 gataatcatc aatgataatc atcaatgatt aattcacatt tgctctaaat ctcctataat
     2581 agtaatgaat attatgtaat attcattaaa tagttatatc ttattataat atttatatgt
     2641 ataacaatac tttttacaag tacatcttta tattctactt tgcagaatta agattacaga
     2701 tatggctcag atgcccgcat taataccaaa agaagtcgaa attcaaagac taaaaaagat
     2761 ctatataatg gtaattatgc taggttctat tgctgcatca gtagaagtcg acaactttgt
     2821 tgatggatca ttgcatcaaa cagctatacg tgattctgca tttacaccag ctcattggtg
     2881 gttatacagt cacttcattg cactaccatt aggatgggga tttgttgcaa tgtatgacag
     2941 aagagttcca gttctaagag gtccaaataa ctctatgaat accggcttaa agataaccat
     3001 tattggttac ctagccacaa tgttcacaat aggtattaac gagatgtggc acttttggtt
     3061 cgtagaagaa atcttctcag ttcctaacca ctggatgttt aacatgggtg tagttgtagc
     3121 tttcatgggt gctcttgcat atgtagtaag agtctatgca cgtttagttg aacttggagc
     3181 tgaaacacca ggaaagaatc catacgttgc agaaatgtac aagctagcat tagaaggaaa
     3241 attatacagc agatctatcc cataaaagaa aagaaaagaa aagaaaagaa gaatttcaaa
     3301 cattatttat tttatttttt tttttgtttt aaacaaaatt ttgctatttt ttgatctata
     3361 agtaatttta taagattact attaataata aaatattatt tttcctttac gaaattgttt
     3421 aaaaaaatct cgagtaaaaa aacgaaagca ttagttaata acaaatcgct taataacaat
     3481 atagaattat tacgaattat tacgaatatc gaataatttt aaatatatta gatgaataaa
     3541 atatagagat tgcttaactt tacaagtgta tataatcata gaaaggaata aattcacttc
     3601 gtttacat
//
LOCUS       DATCMF010000418         1591 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_121094, whole genome shotgun sequence.
ACCESSION   DATCMF010000418 DATCMF010000000
VERSION     DATCMF010000418.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1591)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1591)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1591
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_121094"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..367)
                     /locus_tag="VIL14_05320"
     CDS             complement(<1..367)
                     /locus_tag="VIL14_05320"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR03666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0070967 - coenzyme F420 binding [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PPOX class F420-dependent oxidoreductase"
                     /protein_id="HEY8523163.1"
                     /translation="MNNNYNNYHQSLETGKYINLLTYKKNGEPVSTPVWFIFKDNKIF
                     IRTSNKSGKFKRIKNNKNVKFALCNIRGKIKGEWHNGFAKLEPNNRWVFSKINKKYGI
                     FAYLMNFLYKIKKMDIIILS"
     gene            616..1524
                     /locus_tag="VIL14_05325"
     CDS             616..1524
                     /locus_tag="VIL14_05325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523164.1"
                     /translation="MKLTIVSNIVKDKIILENNQITYSLGGPPCYCGLIAKQFGAKVR
                     LVTKFGQDLSDKELLFFKNSNFEVNNNSLSQSPTTKFILKINGLNRDLYLLDKCDPIL
                     IPDIEQINTDGWIISPVFDEVPYFVLEYLINNHNSDFLMLDPQGYTRTIDTNSKVILY
                     KSLDPIFFKNIDAIKLDPQELFCFSGGNDINALRKLKLNNTIKYALYSENQRIHMLNQ
                     DKHYWLEINKVNTPDSTGAGDILASAFTCAFIKERDPLWAFSFGVGAVMASLKTKKNG
                     IEKIPQIKFIEENASYNYNLIKYESF"
BASE COUNT          591 a          200 c          211 g          589 t
ORIGIN      
        1 tagataaaat aataatatcc atttttttga ttttgtataa gaagttcata agataagcaa
       61 aaatgccata ttttttattt attttggaaa aaacccatct attattaggc tctaattttg
      121 caaatccatt atgccattcg ccttttattt ttccacgaat attgcataag gcaaacttaa
      181 catttttgtt attttttatt cgtttaaatt ttccagattt attactagta cgaatgaaaa
      241 ttttattatc tttaaaaata aaccaaactg gagtcgatac tggctctcca ttttttttgt
      301 atgttagaag attaatatat tttccagtct cgagtgattg atgataatta ttataattat
      361 tattcaacga ctatctctat attgtcactt ttattattat aatttactaa tataatagag
      421 gtagcattgt taaactttat gatgaaatca gatgacttct caaacttatc atcaaaaagt
      481 tgttataaac ccaataaatc acaacttcta tagattttta ttgaatatag taccaactga
      541 gattttttta aatctacaat gttaaactaa tagatttaca atagttaata ttataaaaat
      601 taaagataaa ggtaaatgaa actaactatt gtttcaaata tagtaaagga taaaataatt
      661 cttgaaaata accaaattac ttacagttta ggaggtcctc cttgttattg cggtcttata
      721 gctaaacagt ttggagctaa agttaggcta gttactaaat ttggacaaga tttgagtgat
      781 aaagaattac tattttttaa aaattccaat tttgaagtta ataataattc actttcacag
      841 tctcccacaa caaaatttat tttgaaaatt aatgggttaa atagagacct atatttatta
      901 gataaatgtg atcctatttt gattcctgat atagaacaaa ttaatactga tggttggatt
      961 attagtccag ttttcgatga agttccatat ttcgtgcttg aatatttgat aaataatcat
     1021 aatagcgatt ttttgatgtt agatccacag ggatatacta gaactataga cacaaacagt
     1081 aaagttattc tgtacaaaag tttagatcca atatttttta aaaatattga tgcaataaag
     1141 ttggatcctc aagaactgtt ttgtttttct ggaggtaacg atataaatgc tcttagaaaa
     1201 ttaaaattaa ataatactat aaaatatgct ctttattcag aaaatcagag aatccatatg
     1261 ttaaatcaag ataaacatta ttggcttgaa attaataaag tgaatactcc tgattctaca
     1321 ggtgcaggag atattcttgc atctgccttt acttgtgcct tcataaagga acgggatccc
     1381 ttgtgggctt ttagctttgg tgtgggagca gtaatggctt cattaaaaac aaaaaaaaat
     1441 ggaatagaaa aaattcctca aataaaattt atagaggaaa atgcttccta taactataat
     1501 ttaataaaat atgaaagttt ctaattcttt gatctaccaa tttatctcag tgaaaaaata
     1561 acataactat tttaaaatag aagctaattt t
//
LOCUS       DATCMF010000419         1867 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_386029, whole genome shotgun sequence.
ACCESSION   DATCMF010000419 DATCMF010000000
VERSION     DATCMF010000419.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1867)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1867)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1867
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_386029"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            561..1772
                     /locus_tag="VIL14_05330"
     CDS             561..1772
                     /locus_tag="VIL14_05330"
                     /inference="COORDINATES: protein motif:HMM:NF012318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HEY8523165.1"
                     /translation="MTLLFSNNNNTNYALGQISDNLLEQNNSTELKIQDLFSQTSKSV
                     VQITVIDPLSNAQQALGSGFLYDKDGHIITNNHVVTFNQGNNNYLVTFSNGNSYQAKL
                     IGHDPYSDLAVLKLDPIDIVLSPIPLGNSSSLRVGDTVAAIGNPFGLSGSLTVGIVSG
                     LGRLLPSTEGSTSPFSQFAMNFNIPDIIQTDAAINPGNSGGPLLNLKGEVIGINSAIF
                     SNTGVNAGIGFAVPSNTVKKVVQSIISSGKYLHPYLGVVGMDITPQLAKIFGLKESKG
                     FLITDITPGSPAAKSGKLQKGTITYNQRGEIIDSDGDIIVAIDDKEVRKIDDILTYLE
                     REKEVGDTVTLKILRNDKLENVEIVLAPRVSEEESAVLQQYDKKPVPKQDDFLAQCYQ
                     FLPKSLCDLLR"
BASE COUNT          696 a          273 c          282 g          616 t
ORIGIN      
        1 gaaccattct cactctccat attaaacaaa caacaatcga aatatgtaaa atcagcacag
       61 tcagtcattg aatcgcatcc ttaatatagt tagatttcat tatattgcaa tagaaaagtc
      121 aattattact tacagtattg caatccattt acctattaca ataaatcaac aggaggaatg
      181 agttatagaa atatttatag atatggttaa atactattac attgaaaaaa ataatttcct
      241 atcctatatt atctatatgc aaagacacat atacactgaa tatgcacaga cttcaatata
      301 gcagatgcat tacattaaaa taccatatca ataagcaaga tacgaagaaa tacattaatt
      361 tatcaattga tgcggtacgg acgttctaaa acaaataaac tttagcatca agagcagtaa
      421 aacatcaagt cgaattatga caatatagat tttctaatag aatagtgtga gattgattaa
      481 attaatatta cactttatta attaaatagt aaatgttaat taaaacttct gttattttat
      541 atttatcatc ttttatatta ttgacattac tgttttctaa taacaacaat actaattatg
      601 cattaggtca aatatcagat aacttactag aacaaaataa ttctactgaa ttaaaaattc
      661 aagatttgtt ttcacaaaca tctaaatctg tagttcaaat aactgttatt gatcctcttt
      721 ctaatgcaca gcaagcttta ggttcgggct ttctttatga taaggatggt catatcatta
      781 caaataatca tgtggttact tttaaccaag gaaataataa ttacctagta actttctcaa
      841 atggaaattc atatcaggct aaattaattg gtcatgatcc ttacagtgat ttagctgttc
      901 tcaaacttga tccaatagat atagttctta gtccaattcc tttaggtaat tcttcatctc
      961 ttcgggttgg ggatactgtg gcagctattg gtaatccttt tggcttatca ggatctttaa
     1021 cagtagggat agtcagtggt ctaggaagat tgctaccatc aactgagggt agcacttctc
     1081 cattttctca gttcgctatg aattttaata ttccagatat tatacagaca gatgctgcaa
     1141 ttaatcctgg caattctggt ggcccattat taaatttgaa aggtgaagta ataggaatca
     1201 attctgcaat attttctaac acaggtgtta atgcaggaat agggtttgct gtaccctcta
     1261 atacagtaaa gaaggttgtt caatcaatta tatcatcagg aaaatatctt catccatatc
     1321 ttggtgtagt tggaatggat ataactcctc aattggctaa aatttttgga ttgaaggaat
     1381 caaaaggctt tttaattact gatattactc caggtagtcc agccgcaaaa tcaggcaaat
     1441 tacaaaaggg aactataaca tacaaccaaa ggggagaaat aatagattct gatggtgata
     1501 taatagtagc aatagatgat aaagaggtaa gaaaaataga tgatattcta acgtatctag
     1561 agagagaaaa agaagtagga gatactgtta cattgaaaat tttaaggaat gataaattag
     1621 agaatgttga gatagtatta gctcctagag tctcagaaga agaatctgca gtattacaac
     1681 aatacgataa aaaacctgta cccaaacaag atgattttct tgcacaatgt tatcaattct
     1741 tacctaaatc tctatgtgac ttgctaagat aatcttttat tttttagatt tgatcatcaa
     1801 caacagatac ttataaaaga taaaatatta ttaaaatggt aaaatttact atagtagagt
     1861 atttaat
//
LOCUS       DATCMF010000420         1705 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_386509, whole genome shotgun sequence.
ACCESSION   DATCMF010000420 DATCMF010000000
VERSION     DATCMF010000420.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1705)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1705)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1705
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_386509"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1023)
                     /gene="fen"
                     /locus_tag="VIL14_05335"
     CDS             complement(<1..1023)
                     /gene="fen"
                     /locus_tag="VIL14_05335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flap endonuclease-1"
                     /protein_id="HEY8523166.1"
                     /translation="MGLDLKPLVKSSPIMISELSGKVIAVDAYNTIYQFLATIRGATG
                     ELLTNNSGEVTSHLSGLFYRNVNLLAENIKLIYIFDGKPSPLKSKEIERRRQVKQDAF
                     KKYQEAITAGRFEDARKYGQATSVLTDMMVEESKMILTLLGIPYIQAPSEGEAAAAQL
                     TQSNIAFACASQDYDSLLFGAKRLIRNLTISGKRKVPNRNVYVDIEPEIIQQQQLLNE
                     TGLNLEQLVDVGIMIGTDFNPGGIPRIGPKTALKLVQEYNKLEKIEKIEDSVVNIPYE
                     EIREIFLKQETPKIDNIEFNEINYNALINFLCVEKNFSETRVNTSLDKLKKSITNRNQ
                     SLERWFK"
     gene            complement(1107..1364)
                     /locus_tag="VIL14_05340"
     CDS             complement(1107..1364)
                     /locus_tag="VIL14_05340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEY8523167.1"
                     /translation="MKYRSRTDITVLILEAANGGATKTKIMYKSFLSYAQLKEYLTML
                     LENELLEYEETRQTFRTTEKGLHLLQLYNRIDSLMPNIRTA"
     gene            complement(1534..1652)
                     /locus_tag="VIL14_05345"
     tRNA            complement(join(1534..1579,1599..1614,1631..1652))
                     /locus_tag="VIL14_05345"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1600..1602),aa:Ser,seq:cga)
BASE COUNT          471 a          314 c          295 g          625 t
ORIGIN      
        1 cttaaaccac ctctctaatg attgatttct atttgtaatt gattttttca atttgtccaa
       61 gcttgtattt actctggttt cagaaaaatt tttttctaca cataaaaaat taatgagagc
      121 attgtaattg atctcattaa attcaatgtt atcaatcttc ggtgtctctt gttttaagaa
      181 tatctctcgt atttcttcat aaggtatatt taccacagag tcctcaattt tttctatttt
      241 ctctagttta ttgtattcct gaactaattt caaggcagtt ttgggtccaa tacgtgggat
      301 accgcctgga ttaaaatcag tccctatcat aattccaaca tctactaatt gctccaaatt
      361 caaaccagtt tcatttagaa gttgctgttg ttgaataatt tctggctcta tatcaacata
      421 tacatttcta ttaggaacct ttctctttcc actaatagta aggttgcgga ttagtctttt
      481 agcaccaaag agcagcgaat catagtcttg gcttgcacaa gcgaaggcta tattagattg
      541 tgtcagttgt gcagcagcag cctctccttc agaaggagct tgaatatagg gaattccaag
      601 aagagtaaga atcatttttg attcctctac catcatatct gtcaaaacag atgtagcctg
      661 accatattta cgcgcatcct caaatctgcc ggctgttatt gcttcctgat attttttaaa
      721 tgcgtcctgt tttacttgcc ttcttctctc gatctctttt gactttaatg ggctgggttt
      781 accatcaaat atataaatta gtttaatatt ttctgccagc agattgacat tacgatagaa
      841 tagaccgctt agatgactcg tcacttcacc actgttattt gtaagtaatt cacccgttgc
      901 accacgaatt gttgcaagaa actggtatat ggtattgtac gcatcaacag ctatcacctt
      961 cccagatagt tcagatatca taattggtga tgacttgact agtggtttta gatctaatcc
     1021 cattataata taatatttag attttagaat gattttactc tttcttaaac ctcttaataa
     1081 tgaaaaaaag gagatatggt tttggcttat gctgtgcgaa tattaggcat caggctatcg
     1141 atcctgttgt atagttgcaa taggtgcagt cctttttctg tagttctaaa ggtctgtctt
     1201 gtttcttcat attctaataa ttcattttcc aatagcattg taaggtattc tttcaattgt
     1261 gcataagata ggaatgattt gtacatgatt tttgtctttg tggctcctcc attggctgct
     1321 tctaaaatta atacagttat atccgttcta cttctatatt tcataacaat cctatgaatg
     1381 gaaaagaggt atttatgaag agctgtagta tcgatcatgt tattcgatca tgttattcga
     1441 tcatgttatt cgatcatgtt attcgatcat gttattcgat catgtagtgt tatcaataga
     1501 tgatggtagt atatggctta aatcatatca aggcgccgga ggtgggactc gaacccacga
     1561 gtcccgaagg acatcagctg gcacgtcatt aataagatct cgaggctgac cccttttagg
     1621 gtctacgact tacctagctt gggtaccccg gcatttcttg tagggttatt ggcttatata
     1681 atatgtgaag cactaaagca tgcat
//
LOCUS       DATCMF010000421         2816 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_121505, whole genome shotgun sequence.
ACCESSION   DATCMF010000421 DATCMF010000000
VERSION     DATCMF010000421.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2816)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2816)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2816
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_121505"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..263
                     /locus_tag="VIL14_05350"
     CDS             <1..263
                     /locus_tag="VIL14_05350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523168.1"
                     /translation="VEVDRENIDRIVSMIIIRNDSHNPTIPLEKIMNDRLKIIQISKE
                     KALLLKNEMMPKDTNNFYQFRKEDGRVIGYIMFAFQICGQHY"
     gene            complement(275..946)
                     /locus_tag="VIL14_05355"
     CDS             complement(275..946)
                     /locus_tag="VIL14_05355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HEY8523169.1"
                     /translation="MKLIKKLEIQSKENIINFLNNQAVGRFATIDINGFPQIIPMNFV
                     YVQAEKIDDSHILKQDAIYMHSYRFGEKIDNIKRNSNTGFEVDQHLAFLPSYYFHPSD
                     ASQADTLYKSVVIKGQSHIIEDKEEKTLALNSLMEKYQPEGNYEKLNSKMHSVQEVTV
                     IKLIPNNMKGKYKIGQQWTPSYRLKIAEKILTREKENAKLIFQVMGIEILEDKNLKIK
                     KEPVL"
     gene            complement(1058..1789)
                     /locus_tag="VIL14_05360"
     CDS             complement(1058..1789)
                     /locus_tag="VIL14_05360"
                     /inference="COORDINATES: protein motif:HMM:NF014752.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ERCC4 domain-containing protein"
                     /protein_id="HEY8523170.1"
                     /translation="MSFRIVVDERERNSRVPKFLIEDGAQIDFARLSVGDYIIAPEIA
                     IERKTIRDLINSIYDGRLFIQCSNLTQFYSKPILIIEGNILNLQLENSNENQINEIEI
                     SFEKILQVYDALATIALIFRIPVIHSPSANYTSKFLIILLNKAIKSGITINGPLIKRI
                     KKGNHMQLQQLSILSSLPGVGDKLAIKLLKKFKTPTRAMNASVSELALIPGFGKARAE
                     KVKKILNYEFNEGITKNQQGTLNFE"
     gene            complement(1851..2225)
                     /locus_tag="VIL14_05365"
     CDS             complement(1851..2225)
                     /locus_tag="VIL14_05365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prefoldin subunit beta"
                     /protein_id="HEY8523171.1"
                     /translation="MSQENELPPWLKEQISRLQQLQQNLQAIMMQKQQIELEIVETER
                     ALEELSKTTTSDSIYKAAGPLLIKSDKDTIEKDLTEKKELANTRVMVLGKQELRVKEN
                     LKEVENKINQMLKGTQSTTQNK"
     gene            complement(2525..2764)
                     /locus_tag="VIL14_05370"
     CDS             complement(2525..2764)
                     /locus_tag="VIL14_05370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L37"
                     /protein_id="HEY8523172.1"
                     /translation="MVNRNRKGQTVLKGLGTKFGATVRKRYSKVYRTLKQKRRCPSCG
                     SLKFMRIACGIWNCPKCNFKVAAGAYDINIDKLQS"
BASE COUNT          912 a          398 c          377 g         1129 t
ORIGIN      
        1 tagtagaagt cgatagagaa aatatagata gaatagtttc aatgatcata attcgtaatg
       61 attcccataa tccaacaata ccactagaaa agataatgaa tgacagacta aaaataatac
      121 aaatctctaa agagaaagca ttgttactga aaaatgaaat gatgccaaaa gatacaaaca
      181 atttttatca gtttagaaaa gaagacggta gggttattgg atatattatg ttcgcatttc
      241 agatatgtgg acagcattat taaatttttg aaacttataa taccggttct ttttttattt
      301 ttaaattttt atcttctaaa atttcaatac ccatcacttg aaaaatcaat ttagcatttt
      361 ctttttctct agttagaatt ttttcagcaa ttttcaatct ataggatgga gtccattgtt
      421 gtccaatctt atatttccct ttcatattat tggggattaa ttttattaca gttacttctt
      481 gtactgaatg catttttgag ttaagttttt cataattacc ttcaggttga tatttttcca
      541 ttaatgaatt taatgctagt gttttctctt ccttatcttc aattatatgt gattgtcctt
      601 ttataactac gcttttatat aatgtatcag cttgtgacgc atcagaagga tggaaataat
      661 atgatggcaa aaaagccaaa tgttgatcta cttcaaatcc tgtatttgaa ttccttttga
      721 tattatctat tttctcacca aatcgataag aatgcatgta tatagcatct tgtttaagaa
      781 tatgtgaatc atctattttt tcagcttgaa catacacaaa attcatcggt attatctggg
      841 gaaatccatt gatatctata gttgcaaatc ttccaactgc ttgattattt agaaaattaa
      901 taatattttc tttggattga atttcaagtt tttttatgag tttcatcaga atttatttca
      961 taataacttt ataaagagat ttaaatataa aatgaaggaa gaatttatat tctaaaattt
     1021 tgaaatatat ttcaatacaa taaattcaat attgaattta ttcaaaattt aatgttccct
     1081 gttgattttt tgtaatgccc tcattaaatt cataattaag aattttcttc actttttcag
     1141 ctcttgcctt tccaaaacct ggaatcaaag ctaattctga taccgatgca ttcattgctc
     1201 ttgttggtgt tttgaatttt ttaagcaatt ttatggctaa tttatctcct acaccaggta
     1261 atgatgaaag tatagataat tgttgtaatt gcatatgatt tccttttttt attctcttaa
     1321 tcaagggccc attgattgta ataccagatt ttattgcttt attcaataaa ataattaaaa
     1381 attttgaagt gtaatttgcc gaaggagaat gaataactgg tatcctaaaa attaatgcaa
     1441 tagttgcaag agcatcataa acttgtaaaa ttttctcaaa ggaaatttca atttcattga
     1501 tttggttttc attagaattt tctaattgta gattcaaaat atttccttct attattaaaa
     1561 taggtttaga ataaaactga gtcaaattgg aacattgaat aaaaagtctt ccatcatata
     1621 ttgaattaat taaatcacgt attgtctttc tttcaatagc tatttctggt gctataatat
     1681 aatcacctac tgaaagtcga gcaaagtcta tttgtgcacc atcttcaatt aagaatttag
     1741 gaactctact atttctctct ctttcatcta ctacaatacg aaaagacaca aatagaatta
     1801 aatattcgga ttattgtttc taactaaaaa ttgaatgata aaaaataact ttatttattt
     1861 tgtgttgtag attgtgttcc ttttagcatt tgattaatct tattttcgac ttctttaaga
     1921 ttttctttta cacgtaattc ttgttttcct aataccatca ctcttgtatt tgctaattct
     1981 tttttttcag taagatcctt ttctattgta tctttatcag attttattaa taaaggtcct
     2041 gctgctttat aaatagaatc cgatgttgtt gttttactta attcctccaa tgctctttct
     2101 gtttcaacaa tttctagttc gatttgttgc ttctgcatca taatagcttg caagttttgt
     2161 tgaagctgtt gtaacctaga tatttgttct ttaagccaag gaggtaattc attttcttga
     2221 ctcaattcat tgaatagtta agtaattgaa tataaattca taacgttata caaataacag
     2281 attagttatg cataaatggg tggttttaat aaggcgcaag taggagttaa tagcagacct
     2341 taattctgat atatcagaag tagaaatctc aattattaaa gatgaaatac aatctgtatt
     2401 tgatatacat attttaattt gtggagtgac tagaattttt gtatcaggtt ctaatgcatt
     2461 atataaagat tttaaaattt tttttgattc tgagggtaaa gagagatcaa gagaaatatt
     2521 aattttagct ttgcagttta tcaatattta tgtcatatgc tccagcggct actttaaaat
     2581 tacattttgg gcaattccaa attccacatg caattcgcat aaattttaat gaaccacagg
     2641 aaggacaacg tcttttttgc ttaagagtgc ggtatacttt actatatctt tttcttacag
     2701 tggcaccaaa ttttgttcct agacccttta gtactgtttg accttttctg ttcctattta
     2761 ccacctattt tatcagctcc tttaatttag ttcgtaaagt ctctgcttta actctt
//
LOCUS       DATCMF010000422         2848 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_452073, whole genome shotgun sequence.
ACCESSION   DATCMF010000422 DATCMF010000000
VERSION     DATCMF010000422.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2848)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2848)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2848
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_452073"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..619)
                     /locus_tag="VIL14_05375"
     CDS             complement(<1..619)
                     /locus_tag="VIL14_05375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VTT domain-containing protein"
                     /protein_id="HEY8523173.1"
                     /translation="MDGINDILTFFDFGYEEYGNVGRYFGILIITFFASIIVFIPVPY
                     FPVLFTAGINQNLDPHLVSLFSAVGAVIAKLIIFYVSYYGRNILSSKTKKRMLPLQKL
                     LSKYGWPGAFAAALTPIPDDLVYIPLGLAKYNPAKFAIATLSGKFILNEFIVFGSVIF
                     GRPVVEVLTSENTDPIYLYIGVVISISILILIIFLYLRIDWGKIIG"
     gene            complement(740..2188)
                     /gene="proS"
                     /locus_tag="VIL14_05380"
     CDS             complement(740..2188)
                     /gene="proS"
                     /locus_tag="VIL14_05380"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004827 - proline-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006433 - prolyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HEY8523174.1"
                     /translation="MSELKEIGITTRKEVDFSEWYSQVVTKAGLIDYSPVKGFIVLKP
                     YGYRIWEIITESLDKKLKESGHQNGFLPILIPESLLAKEKDHFNGFTPEVFWVTKAGD
                     TNLTDKLAVRPTSETLAYQIFSKWIMSYRDLPLKMNFWNSALRAEIKSTKPFIRNSEF
                     LWQEGHTVHENEKEAEEEVLLILNYYHYILENFLAIPTIKGSKTDKEKFVGALYTNTL
                     ESLMPDGKALQMATSHNLGQNFSKPFEIRFLGRDSKQYFAWQTSWGISWRVIGALIMI
                     HGDNKGLILPPKIAPIQLVIVPIFKNKERDIVIEESKKLFVELNNVDLRVIVDDREGY
                     TAGWKFNDWEVKGVPLRINIGLRDINNKNLELVRRDTGEKILIQRETCVKSVQGYLHE
                     IQKSLFEKAKNMHDNNIVTISNYAEMKKILNEKGGFILADWCEKEECENSIKNETGAD
                     IRLIPFEKYTSDNKCIYCKAPSKKTVIFAKSY"
     gene            complement(2216..2518)
                     /locus_tag="VIL14_05385"
     CDS             complement(2216..2518)
                     /locus_tag="VIL14_05385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523175.1"
                     /translation="MSEPNSLPDTNTKFIVPIKLSDTATRLSDEVKNELKSIGMMDEK
                     GKLKLKGVSPKMLKRMKMESVDCPVLQKEISFIPCYVCKNFHSRITGQVYCRGEPL"
     gene            2607..>2848
                     /locus_tag="VIL14_05390"
     CDS             2607..>2848
                     /locus_tag="VIL14_05390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523176.1"
                     /translation="MNSEISFSIKDDSISEILERYQSKTTISKDDALALLESTDILSI
                     LKLSASLKTRFKKDVITYSRKIFINITNLCRDFCSY"
BASE COUNT          926 a          507 c          394 g         1021 t
ORIGIN      
        1 gaccaataat ctttccccag tcaattcgaa gatataaaaa aataatcaat atcaaaatgc
       61 taatactaat caccacacct atatacaaat aaatagggtc tgtattttca gaagtcaaca
      121 cttcaacgac aggtcttccg aaaataacgc taccaaatac aataaactca ttaagaataa
      181 actttcctga taacgtagct atggcaaatt ttgctggatt gtattttgct aacccaaggg
      241 gaatataaac aaggtcgtca ggaattggag tcaatgctgc agcaaaggct ccgggccaac
      301 catatttaga caaaagtttt tggaggggaa gcatcctttt tttcgtttta gagcttaata
      361 tattccgtcc atagtagctt acgtaaaata ttattaattt agctatgact gcacccactg
      421 cactaaaaag agaaactaaa tgtggatcaa ggttttggtt tatgcctgca gtaaataata
      481 cagggaaata aggaacaggg ataaatacaa ttatactagc aaaaaacgta atgattaaga
      541 ttccgaaata tcttcctacg tttccatact cttcataacc gaagtcaaaa aaagtgagta
      601 tatcattaat gccatccaaa tattgcgact cctatctgtt tatattttgt gtaatttaag
      661 tcaataattt tcattaaata tccaggaaat ggaattataa tttacaggag tcatgttaga
      721 actttaggaa ctaaattagt taatatgatt tagcaaaaat tacagtcttt ttagaaggcg
      781 ccttacaata tatacatttg ttatctgaag tatatttctc aaatggaatc agacgaatat
      841 cggcacctgt ctcatttttt atgctatttt cacattcttc tttttcacac caatctgcta
      901 aaataaaacc tcccttttca tttaatattt tcttcatctc cgcatagtta gaaattgtta
      961 cgatattatt atcatgcata ttcttagcct tttcaaataa ggatttttgg atttcatgca
     1021 aataaccctg tacagactta acacaggttt ctctttgaat taggattttt tctcctgtat
     1081 ctcttcggac aagctctaaa tttttattat taatgtctct taatccaata ttgattctca
     1141 gtggtactcc tttaacctcc caatcgttaa atttccatcc tgctgtatat ccttctctat
     1201 catcaacgat aacccttaaa tctacattat ttagttcaac aaatagtttt ttagactctt
     1261 caataactat atctcgttct ttattcttaa agattgggac tattaccaat tgaatgggag
     1321 caatttttgg gggtaaaatt aatcctttat tgtcaccatg aatcataatc aatgctccta
     1381 ttactctcca tgaaatcccc catgatgttt gccaagcaaa atactgtttt gaatctctac
     1441 ctaaaaaacg aatttcaaat ggctttgaaa aattctgacc taaattatga gaagtagcca
     1501 tttgcaatgc ttttccatcc ggcattaatg attcgagggt gttagtatag agcgctccga
     1561 caaatttttc tttatctgtt ttgcttcctt taatagttgg aatagccaga aagttttcta
     1621 aaatataatg gtaataatta aggatcaaca aaacttcctc ttcagcttct ttttcatttt
     1681 catggacagt atgtccttct tgccagagaa attctgagtt tctaataaaa ggtttagtag
     1741 atttaatttc agcacgtaat gcggaattcc aaaaattcat tttcaaagga aggtctctat
     1801 aactcattat ccatttagaa aatatttgat aggcaagtgt ttctgaagtg ggtcgtaccg
     1861 ctaatttgtc agttaaatta gtatctcctg ctttcgtgac ccaaaatacc tctggagtaa
     1921 atccattaaa atgatctttt tctttagcta agagactttc tgggataaga atcggtaaga
     1981 acccattttg atgtcctgat tcttttaatt ttttatctaa agattccgtt ataatttccc
     2041 atattctata tccatatggt ttaagtacaa tgaatccttt aacaggcgaa taatcgatta
     2101 acccggcttt ggtcactact tgactatacc attcactaaa atcaacttct tttctagttg
     2161 ttattccaat ctcttttaat tctgacaaaa aaatccctta taatgtatct aatagttata
     2221 atggctcacc acgacaatat acttgtccag ttatcctact atgaaaattc ttacaaacgt
     2281 aacatgggat aaacgatatt tctttttgaa gaacaggaca atccacagac tccattttca
     2341 ttctttttag cattttagga ctaacgcctt ttaatttaag ttttcctttt tcatccatca
     2401 ttccaatact ctttaattca ttttttacct catcgctgag ccgcgtcgct gtatctgata
     2461 gcttaattgg tactataaat tttgtattgg tatcaggtag agaattaggt tcactcatat
     2521 ctttatgtac tattgataga atatatgatg tttcctatat ccggaaaaat taaagataaa
     2581 ttactttact aattgatata atagtgatga attcagaaat ttcattttcg attaaagacg
     2641 actcaatatc tgaaattctg gaaagatatc aaagtaaaac gactatttct aaagatgatg
     2701 ctcttgccct tttagagtct actgacattc tatctatatt gaaactttca gcctctttaa
     2761 aaaccaggtt taaaaaagat gttattactt attctagaaa aatctttatt aatataacta
     2821 atttgtgtag agatttttgt tcatattg
//
LOCUS       DATCMF010000423         1610 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_387568, whole genome shotgun sequence.
ACCESSION   DATCMF010000423 DATCMF010000000
VERSION     DATCMF010000423.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1610)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1610)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1610
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_387568"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            749..>1610
                     /locus_tag="VIL14_05395"
     CDS             749..>1610
                     /locus_tag="VIL14_05395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523177.1"
                     /translation="MFQEELSASMAGRDLSLLIKMSPPVVTTDTLKGGQTPLIQFRLS
                     DTATNETLKHVTYLIEIEKSEKRLLLDTFHSHTGNLGIQMRPSSADHITINGDQDTIL
                     LSYTGDMEHPVSATGPIFAEGGLYHFIVTIETLDFDRTFIPTDSQPVYEGWLSVGYSI
                     DKDLEINGTDYTIDAISYYDALNNFNYDSSANELKFAMPFDWNLDRLKKVNLYVHEEI
                     SIPKPSPLAANGYKGTVNNIDLTNKSLLVDRTNSSKDVVHIMLTKPTVMDIAQKIVEN
                     NSNIQNNQSKT"
BASE COUNT          586 a          243 c          250 g          531 t
ORIGIN      
        1 aaacaaattt gaaaatcatt tgctatctat taaagatgaa catcagaggc gaataagacc
       61 taacttacat ctccctacct ataatgaata taatgaaagg attataaaat taatagattg
      121 gacttggaga actatggaac aacagtcatc aatataaaaa aagaaggtta taggttgtta
      181 tggcgaattt tcaaagcaat tctgcaatct atatgctggt atctgtgatg cttgtaccaa
      241 agaatgtgaa agacatactg atatgatcac tgcaaacaat gtactcaatc atgtagaaaa
      301 tgtgctgatg aatgtagaag aattgctggt actacaacat aggttaaacc ctaccttttt
      361 attcaaaaaa atttagtaaa ataatatcac aactagatta attttactat tgtaatgtta
      421 tactctttta atgattttat ccaaacttta gggtatagaa catggcaaaa gatccatttt
      481 gtggactatt tgttgaagag agacctaatg cattaagata tactgtagat ctaatatgaa
      541 atttgtaaaa taaaacccga cggtttttga cagctttcaa actaataagg actttagaga
      601 aatcctaaaa aaccataaat ttataaaatt ataagtgatc attattattg ttattatgac
      661 atctattagc tttatttcta ttttattttc catttttcct ctgctaattg tcaatacttt
      721 tatatttatt cccatctttg gagatggctt gtttcaggaa gaattatcag catccatggc
      781 tggaagagat ctttcacttt tgataaagat gtcccctcct gtagttacga cagacacctt
      841 aaaaggtggt caaactcctt taattcaatt tcgattatct gatactgcta ccaatgaaac
      901 tctaaaacat gtaacatatc ttatagagat tgaaaaaagt gaaaagcgtt tactactaga
      961 tacttttcat tctcatactg gcaatctagg aatacagatg agaccatcta gtgctgatca
     1021 cattacaata aatggtgacc aagatactat tttactatct tatactggcg atatggaaca
     1081 tcctgtctct gcaacaggac ccatatttgc cgaaggaggt ctttatcact ttattgttac
     1141 tatagaaaca cttgattttg atagaacctt tattccaaca gatagccaac cagtgtatga
     1201 aggttggctt agtgtaggtt attcaataga taaagatctt gagattaatg gaacagatta
     1261 tactatagat gcaatttcgt attatgatgc attaaacaat tttaactatg attcgtcggc
     1321 taatgagtta aaatttgcaa tgccttttga ttggaatctt gatagattga aaaaagtgaa
     1381 tctttatgtc catgaggaaa tatctattcc aaaaccgagt cctctagctg caaatggata
     1441 taaaggtact gtcaataata ttgatttaac aaataaatca ttactggtag atagaacaaa
     1501 ttcctccaaa gatgtagttc atattatgtt aacaaaacct accgttatgg atattgctca
     1561 aaaaatagta gagaataata gtaatattca aaataatcaa agtaaaacaa
//
LOCUS       DATCMF010000424         3760 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_523395, whole genome shotgun sequence.
ACCESSION   DATCMF010000424 DATCMF010000000
VERSION     DATCMF010000424.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3760)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3760)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3760
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_523395"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(50..1687)
                     /gene="rpe"
                     /locus_tag="VIL14_05400"
     CDS             complement(50..1687)
                     /gene="rpe"
                     /locus_tag="VIL14_05400"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: protein motif:HMM:NF012670.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004750 - D-ribulose-phosphate 3-epimerase
                     activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HEY8523178.1"
                     /translation="MIFHMRYLDLKRKIQEIRINAIEGIAEAGSGHPGASFSAAEIMG
                     VLYFRELRHDSSNPSWTKRDYFINSKGHSAPGYYATLAVAGYFPKNEMKDLRKFGSRL
                     QGHPVRYSKLLEHHSVPGVEYSGGSEGIGLSVSIGIALANVIDNKDNNVYVLLGDGET
                     NEGQVWEAAMTAPKFKLDNLVAILDRNKIQQDGFTEDIMPLDPVRDKWVAFNWNVIEI
                     NGHKVEQIMDALNKASEIKDKPTIIIANTVKGNGIKHMANNPQWHGKAPHNMHIPLLI
                     EELEGEYMIAPSIIAGEKENYEEKIKKVERGGADIIHLDVMDGIFVPNITFLADTIKK
                     LRPITNIPFDAHLMIEKPYNHIEEYINAGCDIITIHAETCDNEKFCYIREKVMSAGIS
                     LGIAINPQTEFPEWAFSYLNDIDVIIVMSVNPGFSGQKFIPDITSKISKLNKTLKMKG
                     YKGYIEADGGIDASTVQRVYDAGARIMVAGSAVFSNSDINTAILQLKHKTNVTLERNL
                     LKKADENSIRKDWIIARKHILIPVANELGIEDEINRI"
     gene            1834..3309
                     /locus_tag="VIL14_05405"
     CDS             1834..3309
                     /locus_tag="VIL14_05405"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0019538 - protein metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HEY8523179.1"
                     /translation="MLKIIADETKISEKRTELLVIGCFLNEDYSDLLNKFNEEISIAG
                     KEIISHIHKFGLLNELYTFAKLPARKILFAGLGNKNEFNTEKSRIISGKIIQYAKEFK
                     IKELSILTFNFSKDTIESFIEGIILSSYSFEKFKTSNNNNNTIDKVSILIESNSKGYQ
                     KIINEISVICQAVNLGREISNLPPNECSPEYLAKIALDLKNQGIKSKIISFDSMKDMG
                     LNGIVSVGGGSINTPKLIVLKYEGTKKEENPILLVGKAVTFDSGGISIKPSDKMEEMK
                     FDKCGGVNVIAIMKSLSSLKINHNVIGIIPTVENMPSNSSYRPSDIIKMYNGKSVEVI
                     NTDAEGRLILADALAFGIKQYKPKLIIDMATLTGACIIALGSNIAGIIGNDEKLIKKI
                     LDISKVTDEKMWELPLSEDHHEQIKSKNADIKNIGGRAAGAITAAAFLSNFVENTPWV
                     HLDIAGTAWNQEGSLSKSYNPPGATGFGIRTIIKFIMNESE"
     gene            complement(3344..3462)
                     /gene="rrf"
                     /locus_tag="VIL14_05410"
     rRNA            complement(3344..3462)
                     /gene="rrf"
                     /locus_tag="VIL14_05410"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
BASE COUNT         1328 a          610 c          596 g         1226 t
ORIGIN      
        1 atcaactaga gcattgccat atgcagatcg catatcccct tttcttaatt cagattctgt
       61 taatttcatc ttctattccc agctcattag caacaggtat caaaatatgc ttacgtgcaa
      121 taatccaatc ttttcttata ctattttcat ctgctttttt taataggttt ctttctagtg
      181 tgacattagt tttatgtttt aactgtagaa tggctgtatt tatatctgaa ttagaaaaaa
      241 cggcgctacc tgctaccata attcgtgctc cagcatcata tactcgttga acagtagaag
      301 catcaatgcc tccatctgcc tcaatatatc ctttataccc tttcattttt agagttttat
      361 tcaacttgct aatcttggat gttatatcag gaataaattt ttgtccagag aagccaggat
      421 ttacagacat aactattatg acatcaatat cgttcaaata agaaaacgcc cattctggaa
      481 attcagtttg tggattaata gctataccta aacttattcc tgcagacatt accttctctc
      541 gaatgtagca gaatttctca ttatcacaag tttcagcatg aattgtaata atatcacaac
      601 cagcgttaat atattcttca atatgattat atggtttttc aatcattaga tgcgcatcaa
      661 aaggtatatt ggttattggt cttaattttt taattgtatc tgctaaaaaa gtaatattag
      721 gaacgaatat cccatccatc acatctaaat gtataatgtc tgctccacct ctttcaactt
      781 tttttatttt ttcttcataa ttttcttttt cccctgcgat gatcgagggt gctatcatat
      841 attctccttc tagttcttcg attaataatg gaatatgcat attatgaggt gctttaccat
      901 gccattgtgg attattagcc atatgtttaa taccatttcc ttttacggta tttgcaatta
      961 taatagtagg tttatccttt atttcacttg ctttgttcaa tgcatccatt atttgttcaa
     1021 ctttgtgtcc attaatttct attacattcc agttaaaagc tacccattta tcacgtaccg
     1081 ggtccaaagg cattatatct tcggtaaatc cgtcttgttg aattttgtta cgatccaaaa
     1141 ttgctacaag attatctaat ttaaatttag gagcagtcat agcagcttcc catacttgac
     1201 cttcgtttgt ttcaccatca cctagtaaaa catacacatt gttatcttta ttatcaataa
     1261 catttgccaa agcaattcca attgaaacag aaagacctat accttctgaa cctccagaat
     1321 attctactcc tggtacagaa tgatgttcta aaagttttga ataccttaca ggatgacctt
     1381 gcaatctaga tccaaatttc cttaaatctt tcatttcatt ttttggaaaa tatccagcta
     1441 ctgccaacgt tgcatagtaa cctggagctg aatgtccttt tgaattaata aaataatctc
     1501 tttttgtcca gctgggattt gaagaatcat gacgtaattc cctaaaatat aataccccca
     1561 ttatttcagc agcagaaaaa gaggcgccag ggtgtccgga tcctgcttca gcaattcctt
     1621 cgatagcatt aattctaatc tcttgaattt ttctttttag atctagataa cgcatgtgaa
     1681 atatcatata tcaatacctt caaaccacaa aagtggcata gagaaacaaa atataaagaa
     1741 agataaaaat ctagctggag gaagattaat tttattagag caatggaaat tcaattcaat
     1801 aatttaaaat attattgttg aatttcataa tgtatgttaa aaattatagc agatgaaaca
     1861 aagataagtg aaaagaggac agaacttttg gttattggat gttttctcaa tgaagattat
     1921 tcagatttac ttaataaatt caatgaggaa ataagtattg caggaaaaga aattatttcc
     1981 catattcata aatttggtct attaaatgaa ttatacacct tcgcaaaact cccggctaga
     2041 aaaatattat ttgcaggatt aggtaacaaa aatgaattta atacagagaa atcaagaatt
     2101 atttctggaa aaataattca atatgcaaaa gaatttaaaa taaaagaact ttctattctc
     2161 acatttaatt tctctaaaga tacaattgaa tcgtttatag aaggaattat cctttcatct
     2221 tattcatttg aaaaatttaa aacttccaat aataataata atactatcga taaggtttcg
     2281 atattgatag aatcaaattc aaaaggatat caaaaaataa tcaatgaaat atctgtgata
     2341 tgtcaagctg tgaatttagg cagagaaatc agtaatttac ctcctaatga atgttctcca
     2401 gaatatctgg caaaaatagc gttggattta aaaaatcaag ggattaaatc taagattata
     2461 agttttgatt ctatgaaaga tatgggatta aatggaatag tatctgtagg aggtggtagt
     2521 attaataccc ctaaactaat agtattgaaa tatgaaggga ctaaaaaaga agagaatcca
     2581 attttacttg tagggaaagc agtaacattt gattctggtg gaatatcgat taaaccaagt
     2641 gacaaaatgg aagaaatgaa gtttgataaa tgcggtggtg ttaacgttat tgcaattatg
     2701 aaatcattat cttctttaaa gataaatcat aacgtgattg gaataattcc tacagttgaa
     2761 aatatgcctt ctaattcttc ttatagacct agtgacatta tcaagatgta taatggaaaa
     2821 agcgtagaag ttattaacac agatgcagag ggtagattaa tccttgcaga tgcactcgcc
     2881 tttggaatta agcaatataa gcccaaacta ataattgata tggctacact aacaggggct
     2941 tgcattatag cactaggtag taatatagca ggcataatag gtaatgatga aaaattaatc
     3001 aaaaaaattc ttgacatatc aaaagttact gatgaaaaaa tgtgggaatt accattatca
     3061 gaggatcatc atgagcagat aaaaagcaaa aatgcagata ttaaaaatat cggaggacgc
     3121 gccgctggag cgatcactgc agcagctttt ttgtcaaatt ttgtagaaaa tacaccatgg
     3181 gtacatcttg acattgcggg aacggcatgg aatcaggaag gaagtttgtc aaaatcatac
     3241 aatccacctg gagcaacagg ttttgggata cgaacaataa tcaagtttat tatgaatgaa
     3301 agtgaataaa atataacctc attcaatata atttaaaatt ttaaaacgcc agcactgccc
     3361 tttcccaacc actcacgtag gtcagtacta ggcagcgacg acaggtttga cttccgggtt
     3421 cggtatgagt ccgggtcgcg ccctgccact atgaccggct aaataaaaaa tatcaaaagg
     3481 ttaatttatt cgtttttaaa atttcaaaac atacaattaa caacaatcag aaatgcaacc
     3541 tagcaagaga tataatacat aaatgtaaaa aatataaaca aatgggaaac cctgaatcaa
     3601 cagcgagagt agcagtttta gatgaagaat tatgtaaacc aaaaaaatgt ggattagaat
     3661 gtattattta ttgtccagta aataaaacag ggggtaaatg cattgttcaa agggaagagg
     3721 atgctaaagc agtaatttcc gaagatctat gtactggttg
//
LOCUS       DATCMF010000425         3610 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_452829, whole genome shotgun sequence.
ACCESSION   DATCMF010000425 DATCMF010000000
VERSION     DATCMF010000425.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3610)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3610)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3610
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_452829"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(136..1017)
                     /locus_tag="VIL14_05415"
     CDS             complement(136..1017)
                     /locus_tag="VIL14_05415"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF020227.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEY8523180.1"
                     /translation="MNRKDQQEKVAVVTGSSSGIGFETSLLLSRNGIYTYATMRNLSK
                     SKKLNDIVEKENLPLKVLQLDVTDDKSVKDSISQITDESSRIDVLVNNAGYDVMGAVE
                     DISIDEFKSQFETNLFGVIRVTKEVLPIMRNQRAGNIINISSVGGRIGIPLNSAYISS
                     KFALEGLSESMRYELEQFGIDVILIEPGVVKSNFFENADVVNNKTNNTISPYSQLTQK
                     LYEGFEPMLKSSSSSLPSDVAKIIYQAIESNDREVRYLVGKDAVSIINARQKLSDKEI
                     ENWIKESLFQQKGFIRQ"
     gene            1229..1801
                     /locus_tag="VIL14_05420"
     CDS             1229..1801
                     /locus_tag="VIL14_05420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523181.1"
                     /translation="MYSNNTAAATTIIGESSFSDSLSIADGFSDSKKKILWYIKVMQQ
                     AGLEELSKVLKISRMAVHKHLNILLKKGFIEPIHIREGNVGRPKIFYQLTRNSKTSFP
                     RSYSTIASSAFDYIEKRMGKEGIMDLLGERQAQLFLQYNQRLNSLEFEDKIKELAKIR
                     DEEGYIAESKKINKKDQRNGTYELLVLYYR"
     gene            2100..2705
                     /locus_tag="VIL14_05425"
     CDS             2100..2705
                     /locus_tag="VIL14_05425"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015325.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEY8523182.1"
                     /translation="MISNKRINVLGVASSMRKESTSTRALKLTLDIIKTNYDAEIQIL
                     DLRQTILPFLYYQEHDKKTEISIAEKMVKWADAFILSTPDYHGSMAGSMKNFLDYFWS
                     EFAGKLFGYICSSHEKGLTVMDQMRTAVRQCYGWSMPYGISINGEKDFRTNGNIRNEA
                     LSQRIQMLARDIVIYGKLHRNQFLNDLSSQEINTFASHYRH"
     gene            3135..>3610
                     /locus_tag="VIL14_05430"
     CDS             3135..>3610
                     /locus_tag="VIL14_05430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523183.1"
                     /translation="MIDNKIKQSLLPVTAFAIMFLAIMVNPIQNTAFGQSNSSENSAN
                     QTKAEITGAPETTIINKTTIPAQQTTVEVNETTSPIDKSALEPLQNMNMQDQPIANLS
                     GFENKTIVKPTGEAKTTTVNQTTVPFEKTIVEGSNQTGSQQQQPSQQNNQTGSQQQ"
BASE COUNT         1324 a          527 c          496 g         1263 t
ORIGIN      
        1 gtgtactcag tgaactattt tgctccaaca ttcattaagt ttttaatttc aaaggtaaaa
       61 tactacttta taataccctt atttgagacc ataataatct aaattattat tttattctaa
      121 tttgtaataa ttttattatt ggcgtatgaa acctttttgc tgaaagagac tttcttttat
      181 ccaattctca atttctttat ctgataattt ttgtcgtgca ttgataattg aaactgcatc
      241 ctttccgact aaatatcgta cttctcgatc attggattct attgcttggt aaattatctt
      301 ggctacatct gatggtaatg aagaagaact acttttaagc ataggttcaa aaccttcata
      361 gagtttttga gttaattgtg aatatggtga gattgtatta tttgtcttat tatttactac
      421 atctgcgttt tcaaagaaat tacttttaac cactcctggt tctattaata taacatctat
      481 tccaaattgt tctaattcat atctcattga ttcagataat ccttctaaag caaatttact
      541 actaatatat gcagagttta gaggtattcc tattcttccc ccaacagaac ttatatttat
      601 tatgttaccc gctctttgat ttctcattat cggtagtact tctttagtga ctctaatcac
      661 accaaagaga ttagtctcaa attgtgattt aaattcatca attgatatat cttctactgc
      721 tcccattaca tcatatccag cattattaac taatacatca atccttgaac tttcatctgt
      781 gatttggcta atagaatctt taactgattt atcatctgtt acatctaatt gtaagacttt
      841 taaaggaagg ttttcttttt caacaatatc atttagtttc tttgatttac ttaaatttct
      901 catagttgca taagtataaa tgccatttct tgaaagcaat aaggaagttt caaaacctat
      961 acctgaagaa ctaccagtta ccacagcaac cttttcttgt tgatctttcc tattcataaa
     1021 cggtatttca tatcaagtta tatataataa gtagtttaca aattataaaa attattatta
     1081 ttattattat tattattatg atattttcgt taatactttt tgtaataatt tcaaataaat
     1141 atttatttaa ttcaatttca gattatacta atttgtaaaa tttgtaaacc aaacagtata
     1201 agaaatagca atttaaatat agattaattt gtattctaat aatactgctg ctgctaccac
     1261 tattatagga gaatcttcat tttcagacag tctttcgatt gctgatggat ttagtgattc
     1321 taaaaagaaa atattatggt atattaaagt aatgcaacag gcaggacttg aagaattatc
     1381 taaggtttta aaaatatcaa gaatggcagt tcataaacat ctcaatattt tacttaaaaa
     1441 aggatttatt gaacctattc acattagaga aggaaatgtt ggaagaccta aaatatttta
     1501 tcaattaaca aggaacagta agactagttt tccaagatcg tatagtacta ttgcatcttc
     1561 tgctttcgat tatattgaaa agagaatggg aaaagaaggt atcatggacc tactaggtga
     1621 aagacaagcc cagctctttt tgcaatataa ccaaaggctc aatagtttag aatttgaaga
     1681 taagataaaa gaattagcaa agattcgtga tgaagagggg tatatagcag aatcaaaaaa
     1741 aatcaataaa aaagatcaaa gaaatggaac atatgaacta cttgtcctat attacaggta
     1801 gcagaaaaac attgggaagc atgtgtagta gagacagaac tttttaaaaa gattcttgat
     1861 ggagaaatag aaactagtca tactgccgct aaaggagatg ctatttgtag atttataatt
     1921 aaaccaaaca agcaagaatt tttataatta taaaaataac ttattattaa attataatag
     1981 tatgaacata taaattcaat atagtaatca cttaataaaa tattttttct cttttatatg
     2041 ttatatttta taatttgtaa acctttagac ttataaaata taaaagttaa taaattaatg
     2101 tgatatcaaa taaaagaatt aatgttttag gagttgcttc tagtatgcga aaagaatcca
     2161 ccagtactag agccttgaaa ttaacactag atataataaa gacaaattat gatgcagaaa
     2221 ttcaaatttt agatttaaga caaacgatac tacctttttt gtattatcaa gaacatgata
     2281 aaaaaaccga aatctcaata gctgaaaaaa tggtaaagtg ggctgatgct tttattcttt
     2341 ccacgccgga ttatcatggt tctatggctg gttctatgaa aaattttcta gattactttt
     2401 ggtctgaatt cgcaggaaaa ctttttgggt atatatgttc ttctcatgaa aaaggattga
     2461 cagtaatgga tcagatgcgc acagcagtaa gacaatgtta tggatggagt atgccttatg
     2521 gcatctctat aaatggagaa aaagacttta gaacaaatgg aaatattaga aacgaagcat
     2581 tatcacaaag aatacaaatg ttagctcgag atatcgtaat atacggaaaa ttacatcgaa
     2641 atcaattcct taatgattta agttcccaag aaataaatac atttgcctct cactatagac
     2701 attgatttat ggttatttgt aattagatca gtttactcat agatttcttt gtgtgattgt
     2761 tactgtatct atattgatgt agatactata gactattaat tattgaatca ccatccataa
     2821 ctatttttat tgttccagtt aagtttatct aaattcttta ttgtattgta ataggcaatg
     2881 acaaagtcag agctattgga ctttcctcac gaaaaaatga aacattgtgt taataatacc
     2941 ttgaggatat tatttataac tactgctaat tctttttgat agtttataat atttcttctt
     3001 atctaaacct aaaaaatgat tgagtttaac taatatttct ttcaatacta tacaaatgat
     3061 atagtcagtt aagatttcta gggcttttta taattctttt aggtatttat attatgttgt
     3121 actatctcta tataatgata gataacaaaa ttaaacaaag tcttttaccc gttactgcat
     3181 ttgcaataat gtttttggcc attatggtaa atcctattca aaatactgcc tttggtcaat
     3241 ctaattctag tgaaaattca gcgaatcaaa ctaaggcaga aattactggt gcaccagaaa
     3301 ctacaattat aaataaaaca actatacctg ctcaacaaac caccgtggaa gtaaatgaaa
     3361 ctacatcacc aattgacaag tcagctcttg aaccgttaca aaatatgaat atgcaagatc
     3421 aacctatagc taatctttca gggttcgaaa ataaaacaat agtaaagcca accggagaag
     3481 caaaaacaac tacagtaaac caaacaactg taccttttga aaaaacaatc gtagaaggta
     3541 gtaatcagac aggatcacaa caacaacagc cttcacaaca aaataatcag acaggatcac
     3601 aacaacaaca
//
LOCUS       DATCMF010000426         4235 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_254177, whole genome shotgun sequence.
ACCESSION   DATCMF010000426 DATCMF010000000
VERSION     DATCMF010000426.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4235)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4235)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4235
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_254177"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(304..468)
                     /locus_tag="VIL14_05435"
     CDS             complement(304..468)
                     /locus_tag="VIL14_05435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523184.1"
                     /translation="MGESEKEKRIQKPRIYDDETLEKMKKYYNIDDSTELLRFIRSNG
                     LHNEEHYDNR"
     gene            complement(830..2767)
                     /locus_tag="VIL14_05440"
     CDS             complement(830..2767)
                     /locus_tag="VIL14_05440"
                     /inference="COORDINATES: protein motif:HMM:NF016906.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="right-handed parallel beta-helix
                     repeat-containing protein"
                     /protein_id="HEY8523185.1"
                     /translation="MFSIRNIIILGIVVFPSLLILILVNIIDNSFAVDFHNTLTNNAA
                     EFENKVIKSNNSLKEDDICLRYENITKTIVVCNGTVDILTINDFFKNNSDILEMTGEK
                     EWILKSNILILENGTLNINGMNTRLLKIDSDSSNNIAYSIISRGNLIIDNTNITSWNS
                     TSNEIPQLISPETPRAFIWTFWNSAGKTNITNSFFENLGYKGHSGTTGITFFSGDGSI
                     IQNNTIINNYFGLRFANEVSNVTIKNNNILRSQFDGINLDLNTNNIDILENRIYENNL
                     HAIVCKKNCNNIKIMNNILENNIGIGILFERNSSINYVKSNNIRSNTMGMMVSESPEN
                     DIIMNNFVGNGNGIFLKNTKNNLINSNNITNSNNYGINIYNNSTNNIIQFNNIKKSMN
                     SGVNIADYGTNNNKLINNKIVEGPNYGLKFDKTSNNILENNIIENNQNDDFFIRQSKD
                     NKILNSYFNYTEFLLNDKKSNMIITDTMNKIIDGNNITNTVYKQNNTIILNPNNNFTK
                     LKTLDLFVNPESSYVNITKVNYDLEKNKENKRIDLLYPELGIETNFILGGFNPGSQVL
                     VKVNKEIKDLITIDNNNNTAQFNLKNDQLSYRLEFELTNTPILITIIILFILILISIS
                     TFLILRKKRRNREINKQQTKI"
     gene            2913..4190
                     /locus_tag="VIL14_05445"
     CDS             2913..4190
                     /locus_tag="VIL14_05445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523186.1"
                     /translation="MTLQGGANDNIVKYLVIFFFTLLVSHIVFYTLPLQQIYGANNVN
                     TSSGPPYNGVDMHGFYTRTSQARDTNYDLPKNYFEESFKILSSNGLNHVRFLIFWESF
                     VKNPTEFIAELKTVANAADKYNITVLYDNHQFHTSSYLNPQRGTGFPFSLFEADFAFF
                     YGSGGGTKYPTAKVWWTNWWDRNVRDKDANDGWTLQTEFFKKVLETVDNHTSTVGYEI
                     LSEPQVHDKNQWEKIGKYNTFMADFLRKYTDKTIAYSMNIPVSLQSPIELNPINLAKM
                     APKNVSNLVFKISVYGVPQENEYQESRLSNFVQAAELANVPLYVGEWNNVQRDKIIDE
                     EGEIITFINETFSSINQSEANKLVSVFKDLDVWGSAFWQWRVDSHQVQNFNLINITNG
                     KIETTPFFDIVKTAYQTIYGDTKKTPSNTTTLT"
BASE COUNT         1444 a          568 c          562 g         1661 t
ORIGIN      
        1 tgtaaatgtt ttccttaatg gttatcagct gaaatgagaa atagtaacaa aggtgtattc
       61 acttctctct taccctattc ttaaaagata aaagaatact tatacatcta acataaagga
      121 aatgatattg aggttttgat aaatgtatcg aattctgtat aaaatttcct attatgctgt
      181 tagtatctaa ttatgctgct agtaagtttg caatttatgc ataggaaaat tttttgtatg
      241 tccctatatt ttattatgca gatatatagg caagagaatt ttcaaatggt tagataatat
      301 cttctatctg ttatcataat gttcttcatt atgtagccca ttagatctta tgaatcttaa
      361 taattctgta gaatcatcaa tattataata ttttttcatt ttttccaagg tctcatcatc
      421 ataaatcctt ggtttttgga tccttttctc tttctcgctt tctcccatat tattttttta
      481 catttataat acttaagttt ttataagtga tatataacca taaaagattt tcataatttt
      541 ttaaaatatt cataacaaac atttaccaaa taaaggaaga gagtagacaa tttttcttaa
      601 ggaatcaaat accttttaat tagatagtag aatatagccg gatagcaatc aaaaattttg
      661 tctatctgag ttgttgagtg acttgaggtt gtagtattat ttttacgaca gaagttgatt
      721 ttattatctt tactccgatt cttcgatatg tgaaatatac gatattaaaa tatgagaaat
      781 tgtatagtga aatttagtaa tttttattca tgcgatcatt tttttataat taaattttcg
      841 tttgttgttt gtttatttct ctatttcttc ttttttttct taatatcagg aaagtactga
      901 tagatattaa aattaaaata aataaaatta taatagtaat taatattggt gtattcgtta
      961 attcaaactc caatctatat gataattgat catttttcaa attaaattgt gccgtattgt
     1021 tgttattatc aatagttata agatctttta tttctttgtt cacctttacc aatacttgac
     1081 ttcctgggtt aaatcctcct aaaataaaat ttgtctcaat tcctaattca ggatataata
     1141 aatcaatcct tttattctct ttattttttt ctaaatcata gtttactttg gtaatgttta
     1201 cataggatga ttctgggttt acaaatagat ccagagtttt taattttgta aaattattat
     1261 tcggattaag tattattgta ttattttgtt tatagactgt attagtaata ttattcccgt
     1321 caataatctt attcattgta tcagttatta tcatattact ttttttatca ttcagcaaaa
     1381 attccgtata attaaaataa gaatttaata tcttgttatc cttggattgt cttataaaga
     1441 aatcgtcatt ttggttattt tctattatat tattttctaa tatattatta gatgttttat
     1501 caaattttaa gccatagtta ggcccttcaa caatcttgtt atttatcaat ttattgttat
     1561 ttgttccata atctgcaata ttcactccac tattcatgga tttctttata ttattaaatt
     1621 gaattatatt attagtagaa ttattgtata tgtttatccc ataattatta ctgtttgtta
     1681 tgttatttga attaattaga ttattctttg tattcttcag gaaaattcca ttaccatttc
     1741 ctacaaagtt attcattatt atatcatttt ctggtgattc tgaaaccatc attcccattg
     1801 tgttggatct aatattgttt gatttaacat aatttatgct agaattcctt tcaaatagaa
     1861 ttcctatacc gatattattt tctaagatgt tattcatgat ttttatatta ttacaatttt
     1921 ttttacatac tatggcatgt aaattatttt cgtaaattct gttttctagt atgtcaatat
     1981 tgtttgtatt taagtccaaa ttaataccat caaattgact ccttaaaata ttgttattct
     2041 ttatagtgac attagaaact tcatttgcaa agcgtaatcc aaaataatta ttaattatcg
     2101 tgttgttttg aattatacta ccatcaccag aaaaaaatgt tattcctgtt gtccctgaat
     2161 gacctttata acccagattt tcaaaaaatg aattggtaat attagttttt cctgctgagt
     2221 tccagaaggt ccatataaaa gctctgggag tttcaggact gattaattga ggaatctcat
     2281 tacttgtcga attccaggaa gttatatttg tattgtctat aattaaattg ccccttgaaa
     2341 ttatagaata tgcaatatta tttgaagaat cagaatctat tttaagtaga cgagtattca
     2401 taccattaat atttaatgtt ccattttcaa gtatcaaaat gttagacttc aatatccatt
     2461 ctttttctcc tgtcatttct agaatgtcag aattattctt aaaaaaatca ttaatagtaa
     2521 gaatatctac tgttccatta caaactacaa tagtttttgt aatgttttca tatctcaaac
     2581 aaatatcatc ctcttttaga gagttattac tttttataac cttattttca aattcagcag
     2641 cattattagt taatgtattg tgaaaatcaa ctgcaaatga attatctata atattaacta
     2701 aaattaaaat taataaagag ggaaatacaa caatgcctaa aattataata tttctaatac
     2761 taaacacttg cgttactaca ttaaattaat atgctatata aatgacgaca aaattattaa
     2821 tgcagttatt accttttttt ttttaataac atacttctag taagaaatgg agagacacac
     2881 atttatataa aaataatcaa attatattgt tcatgacatt acagggtgga gctaacgata
     2941 atattgttaa atatcttgtt atattcttct ttactttgct ggtctctcat attgtttttt
     3001 atactttacc tttacaacag atatacggtg ccaataatgt aaacaccagt agcggaccac
     3061 cgtataatgg tgttgatatg catggctttt atactagaac atctcaagct agagatacaa
     3121 attatgatct tccaaaaaat tattttgaag agagctttaa aattctttca tctaatggat
     3181 taaatcacgt tcgattcttg attttctggg aatcttttgt aaaaaatcct acagagttta
     3241 ttgcagaatt aaagactgtt gcgaatgctg ctgataaata taatattaca gttctatatg
     3301 ataaccacca atttcataca tcgtcttatc taaatcctca aagaggtact ggctttccat
     3361 tttcattatt tgaagcggat tttgcatttt tttatggaag tggtggtggt accaaatatc
     3421 ctaccgctaa agtatggtgg acaaattggt gggatagaaa tgttcgtgac aaagatgcaa
     3481 atgatggctg gacgttacaa acagaattct tcaaaaaagt tctcgaaact gttgataacc
     3541 atacaagtac tgtaggctat gaaattttaa gtgaaccaca agtccatgat aagaatcaat
     3601 gggagaaaat aggaaaatac aatacattta tggcagattt tctgagaaaa tatacagata
     3661 aaactattgc atatagtatg aatattcctg tatctttaca aagccctatt gaattaaatc
     3721 caattaatct agcaaaaatg gcaccaaaga atgtgagtaa tcttgtattt aaaataagcg
     3781 tatacggagt cccacaagaa aatgagtatc aagaatcaag gttgagtaat tttgttcaag
     3841 ctgctgaact agcaaatgtt ccactctacg taggagaatg gaataatgtt cagagagata
     3901 agattattga tgaagaagga gaaattatta cctttattaa tgaaacattt agcagtatta
     3961 atcagagtga agccaataaa ttagtatctg tgtttaagga tcttgatgta tggggatctg
     4021 cattttggca atggagagtt gattctcatc aagtgcaaaa ctttaatttg attaatataa
     4081 ctaacggaaa gatagaaact acaccttttt ttgatatagt gaaaactgca tatcagacaa
     4141 tttatggaga tacaaaaaaa actccttcta atactacaac actaacttaa ccatcaatat
     4201 atgtttagta gatgaagggt acaaactcat tatga
//
LOCUS       DATCMF010000427         2377 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_453179, whole genome shotgun sequence.
ACCESSION   DATCMF010000427 DATCMF010000000
VERSION     DATCMF010000427.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2377)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2377)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2377
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_453179"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2377)
                     /locus_tag="VIL14_05450"
     CDS             complement(<1..>2377)
                     /locus_tag="VIL14_05450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HEY8523187.1"
                     /translation="VEADNQLWIVGETRLEQLMNELHIEFYRIKKIIKGKELDGKYYI
                     HPLLDLIPELKKLADSKLIHFVVSEDFVDITTGSGIVHLSPANGEEDFNIAKKKNIPI
                     FVPIDDRVVFTDQAGEFSGYFVRDTDEKIMQIMKDLKASIKIGKTKHQYPTCWRSHHK
                     LVWLARREYFYMIEKLGDKPIKAAKDVEYFFEAPKNRFIEIIKEKVPWCISRERIWGT
                     PIPIWICSNCRHKELLSDKNDLVNRSTNLVRDKNNNLILKLDKDQYNEIVTTVNDDND
                     ISLNDKGHFELHRPWIDQIKISCPKCNSSMTREPYVLDTWHNSGAAPFASFNDNDYKK
                     LIPAFFLTEGIDQTRGWSYSLLMQNVILKNESIAPFKSFLFQGHVLDEKGNKMSKSAG
                     NVIEANLMLEKNAVDLVRFYFVWKSSPIEALNFSLKEMTSRPYQILSTLYYLHIYLKQ
                     NSVLDNFDRSIHDLEWVIKNNLLETPEKWLLSVLQNLIKNINFLFENCRFHEATKAIE
                     EFIINNISQTYIPLTRNYIWNDSVEEINRRLTIFSILDYVLEKIDIVLHPISPFLTEY
                     LYLNCFSKIKNLKQVGSSKDSILLSKWPELETSLIDQDLENIFEKIKTIISLANSARM
                     KAKIKRRWPVTEMAICSILDKETLAQSNNNNRQNYYDHNQLDTELSKNDISEILKNQL
                     NVQSYKVKQIHTSNTVEKVLEMINAHLPVLPLISIIRKNVAPQVKSDIGKVISEFEKI
                     DKEEVLYTLKTAKKFRLLYDKTSSSSSSSSSSSFIDLYEKDLEISFSVKEG"
BASE COUNT          748 a          372 c          347 g          910 t
ORIGIN      
        1 taaccttcct taactgaaaa tgaaatttcc aaatctttct catataaatc aataaaagaa
       61 gaagaagagg aggaggagga ggaggaggaa gtcttatcat aaagtaggcg aaatttttta
      121 gctgttttaa gagtataaag aacctcttct ttgtcaattt tttcaaattc tgatataacc
      181 ttacctatat cagatttaac ttgtggtgct acattttttc gaataatact aattaaaggt
      241 aaaacaggga gatgggcatt gatcatttct agaacttttt ccactgtatt tgatgtatga
      301 atttgtttga ccttgtagga ttgtacgttc aattgatttt tcaaaatttc agatatatca
      361 tttttagaca actcagtatc aagttgatta tgatcgtaat agttttgcct attattatta
      421 ttagattgtg ctaatgtttc tttatctaaa atagaacata tggccatttc ggttacaggc
      481 catcttcgct taatttttgc tttcattctt gcagaatttg ctaaagagat gattgttttt
      541 attttttcaa aaatattctc aagatcttga tcaattaaag atgtttctaa ctcaggccat
      601 ttagagagaa gtatactatc tttagaagaa ccaacctgtt ttagattttt tattttactg
      661 aagcaattca aatagagata ttctgtaaga aatggagata taggatgaag aacaatatca
      721 attttctcaa gcacataatc tagaattgaa aaaattgtaa gccttctgtt tatttcctca
      781 acactatcgt tccaaatata atttcttgta agtggtatgt atgtttgact gatattgttt
      841 ataataaatt cttcaatagc ttttgttgct tcatgaaatc tgcaattttc aaataagaaa
      901 ttaatatttt ttattaaatt ttgtaatact gaaagaagcc atttttcggg agtctctaat
      961 aagttatttt taattaccca ttctaggtca tgaatacttc tatcaaaatt gtcgagaacg
     1021 ctattttgtt ttaaatatat atgcaaataa taaagtgtac tcaggatttg atatggtctt
     1081 gaggtcattt cttttagact gaaattcaat gcttctatag gtgatgattt ccagacaaaa
     1141 tagaacctaa cgagatctac ggcgttcttt tcaagcatta aattggcttc tattacattt
     1201 ccagcacttt tactcatttt attacctttt tcatctaata catgtccttg aaatagaaaa
     1261 gatttgaatg gtgcaataga ttcattcttt aatattacat tttgcattaa tagagaatat
     1321 gaccaacctc tggtttgatc tattccttca gttaaaaaga atgcaggaat caatttttta
     1381 taatcattat cgttaaatga tgcaaaagga gcagcaccac tattatgcca agtgtcaagt
     1441 acatatggtt ctcttgtcat ggatgaatta catttaggac agcttatttt tatttgatct
     1501 atccatggtc tatgtagttc gaaatgccct ttatcgttaa gagaaatatc attatcatca
     1561 ttaactgttg tgacaatttc attatattga tctttgtcaa gttttaaaat taaattgtta
     1621 tttttatctc taacaagatt agtagatcta tttactagat catttttatc tgatagtaat
     1681 tctttatgtc tgcaattgga acagatccaa ataggaatag gagtacccca aatccgctct
     1741 cttgatatac accatggcac tttttctttg attatttcga taaaccggtt tttaggagct
     1801 tcaaaaaaat actctacatc ttttgcagcc ttgataggtt tatcacccaa tttctcaatc
     1861 atgtaaaaat attcccgtct ggccaaccat acaagtttgt ggtgagaacg ccaacatgtt
     1921 ggatactgat gctttgtctt tccaatttta atactagcct ttaaatcttt cattatttgc
     1981 attattttct catcagtatc acgaacaaag tatccactaa attctcctgc ttgatctgta
     2041 aagactactc tatcatcaat cggaacaaaa ataggaatat ttttcttttt tgcgatgttg
     2101 aaatcttctt ccccattagc gggagagaga tgaactattc cactccctgt tgttatatct
     2161 acgaaatctt cagataccac aaaatgaatt aatttggaat ctgctagctt tttaagttct
     2221 ggaattaagt ctaataatgg atgtatgtaa tactttccat ctagttcttt accttttata
     2281 atttttttaa ttctatagaa ttctatatga agctcattca taagctgttc taatctagtt
     2341 tctcctacaa tccagagttg gttatctgcc tctacgt
//
LOCUS       DATCMF010000428         1942 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_453185, whole genome shotgun sequence.
ACCESSION   DATCMF010000428 DATCMF010000000
VERSION     DATCMF010000428.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1942)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1942)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1942
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_453185"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1156)
                     /locus_tag="VIL14_05455"
     CDS             complement(<1..1156)
                     /locus_tag="VIL14_05455"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEY8523188.1"
                     /translation="MESSFEELGVSTPIVKALNEYGYKNPFPIQQESIPIFLKGLDMI
                     GQAHTGTGKTAAYALPILTKIHTRVPIQALILVPTRELALQVTNEINKFSKYVGTRTI
                     SIYGGQNIAIQQEQLRKGVQIVVATPGRLIDHLKRGSIQLDNVKFVVLDEADRMLDMG
                     FIEDIKFILFYVNEERQTCLFSATMPPEIINLAQEYMHNYQEIRLNRDELSLDTIEQS
                     YLIVRENEKFKHLCTLIQNRNKKQQTIIFVSTKQRTEKVFHFLKEDGFKTTMIHGDLS
                     QKQRNSAIYRFRNGSEDILVATDIVARGIDVPAVGHVINYDVPEDPDTYFHRIGRTAR
                     AGGSGIAISLVSNERIDSFTRIMRRTKQNMRKLNDEMGIEIPVIQRAPYRT"
BASE COUNT          615 a          303 c          288 g          736 t
ORIGIN      
        1 atgtacggta gggagctctt tgtatgaccg gtatttctat tcccatttcg tcattaagtt
       61 tacgcatatt ttgtttggtt ctcctcataa ttcttgtaaa ggagtcaatg cgttcattag
      121 ataccagtga aattgctatg ccgcttccgc ctgctctagc tgttctacca attctatgaa
      181 agtatgtatc aggatcttct ggtacatcat aattaatgac atgacctaca gctggaacat
      241 cgattcctct tgctacaata tcagttgcaa caagaatatc ctcacttcca tttctgaatc
      301 tgtatatagc tgagtttctt tgtttttgag atagatctcc atgaatcata gtagttttga
      361 atccatcttc cttcaaaaaa tggaatactt tttctgttct ctgctttgta gagacaaaaa
      421 tgatagtttg ttgttttttg ttcctatttt gtataagtgt acacaaatgt ttgaattttt
      481 cattttctct tacaattaaa taggattgct caatggtatc aaggcttagc tcatctctat
      541 ttagtcttat ttcctgatag ttatgcatat actcttgtgc aagatttata atttcaggtg
      601 gcatagtagc cgaaaataga catgtctgtc gctcttcatt gacatagaac agtataaact
      661 tgatatcctc aataaaaccc atgtctagca ttctatcagc ctcatccaaa actacaaatt
      721 ttacattatc aagctgaatc gatcctcttt taagatgatc tatcagccta cctggtgttg
      781 ccacgactat ttgaactcct ttccttaatt gttcttgctg tattgcaata ttctgtccac
      841 catagataga tattgttcga gttcctacat attttgaaaa tttattaatt tcatttgtaa
      901 cttgtagtgc aagttcgcgt gtgggaacta aaattaatgc ttgaatagga acacgagtat
      961 gtattttagt caatattggg agggcataag ctgctgtttt accagttcct gtatgcgcct
     1021 ggcctatcat gtctaaacct tttagaaaaa ttggtataga ttcttgttgg atagggaaag
     1081 gatttttata tccatattca ttgagtgctt tgacaattgg agtactaact cctaattctt
     1141 caaatgatga ttccatttta ttttttcact ttttaatagc acaaaaggac ggaaaaaatg
     1201 agaagtaatc agtattaact taacaaatct gccgtaattc tcttgttaaa atatatctgt
     1261 taaactgcct tataaggtat actaatctct aaattagatt atacttaaat actatgataa
     1321 ttttatagga aaaatgaaaa tagaattaat aattgttctt agtatatctt agcattatta
     1381 cctttatact aatctttttg tgtataaaat ataagaaaaa atagtattac tgatataagc
     1441 tatgagaata aacgagtaaa gtatgttata ttctctctgt aattaatttt tagatttacc
     1501 aagctctagt gtatagatat gtagataagg aatgaataag atacctaaac gatgtggtat
     1561 ggaattcagt aaattaaatc cagggtattt taccttagtg ctcatgagaa tctggataca
     1621 ataagaatta attttattat tttaataaaa gtcaatttat agttttataa atagaaaaat
     1681 gctctaacat acagattata tattaagtat tttatcctat gcatttaatc aaaatcttca
     1741 gatttatgaa acttgactag aatttgagat tacatatcat taattccaaa agtttgaaaa
     1801 catatattac atttaaattt ctctttacca ggattattag aaataatctc taattgactt
     1861 ttggtcctac atctagggca ctttccatag acagtttttc gggctataag aatttttttt
     1921 tatttaccta tatatatacc at
//
LOCUS       DATCMF010000429         2840 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_388137, whole genome shotgun sequence.
ACCESSION   DATCMF010000429 DATCMF010000000
VERSION     DATCMF010000429.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2840)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2840)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2840
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_388137"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..191)
                     /locus_tag="VIL14_05460"
     CDS             complement(<1..191)
                     /locus_tag="VIL14_05460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523189.1"
                     /translation="MKFRQFTTLNDLISNVHQHGFGIIEYADNKVPCIYVQQHLYDII
                     IEKCRGKKYVVDVLLNIFY"
     gene            complement(254..1867)
                     /locus_tag="VIL14_05465"
     CDS             complement(254..1867)
                     /locus_tag="VIL14_05465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523190.1"
                     /translation="MYPYNLNKNPFPSSPTPNLEDVQVLGGKRHQESRNSILTCIEDL
                     VKQTETNDSREKFRIITIIQDVGSGKTHLTLNIKISGTNEKAIISYLDMAQIYPKNIP
                     SIYQSMISGFEPEYLYNLKKELLYYIKDLIKSDNKIAKKIFKLGFFESISGRGIDNKI
                     LQILENRLQPDLGYIDNVLGDEDFSKNDISTIKIIIQNQFENNESITLMDMINRLSTL
                     SKINLKLFNKISLYQFDEFDNNEETLSFMKALINAHISNTILMLILTPSSYLKIASEN
                     SSIYDRLEKANYKIDLAGSNSFEEISDIVLEYIKFSNLNTTITDGQRKELFSQIKILY
                     EDFDFRNIRSILNIMYSAFEIASNKKMSRISEQILDETLRKTYPGLKIKGSLVDISIS
                     DYIKIKNRIDASRDIKKEIVTSLRGLINYLHQQNIKCKYEYYLPLEEAVNIIYKDHSG
                     STSQITMLLNESTLTNMKSTVFNNIETTVKDFNYPKIKTTNNDSISINLDRTKIIDLL
                     YVYDKINRNLHTMADNNKIFLLAKSINLY"
     gene            complement(1868..2515)
                     /locus_tag="VIL14_05470"
     CDS             complement(1868..2515)
                     /locus_tag="VIL14_05470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523191.1"
                     /translation="MSLEEKIFDKIFSSGVSGLKKTDLTKEFASVNLDNILNTWIKEN
                     KIIVSKKGSTNYCWHKDSYFQYLVDSDPKFKYTLELLKEVQISFQNLSTSIDKHVEKL
                     EGKMIVLMDSILATTTNSHTFENSIPNPQKVINLQSFSEDFDLTICKYSDSIGWVPLV
                     TLRNDLSNKYEISEKEFYDLVEQIVNENRSKYELSTGGNEGIMIRGLVYGYVRCL"
BASE COUNT          946 a          386 c          379 g         1129 t
ORIGIN      
        1 tcataaaaaa tatttagtaa aacatcgact acatattttt ttcctctaca tttctcaata
       61 ataatatcgt acaaatgttg ttgaacatag atacaaggaa ctttattgtc ggcatattca
      121 attattccaa aaccgtgttg atggacattg ctgattaagt cgttaagggt agtaaactgc
      181 ctaaatttca ctttatataa tataatttat agatatttta gtctattcat attaggttta
      241 taaacaaaaa aattcaatac agatttattg attttgctaa taaaaatatt ttattgttat
      301 cagccatagt atgaagatta cgattaatct tatcgtaaac atatagtaaa tcaattattt
      361 ttgttcgatc taaattaata gatatcgaat cgttatttgt agtcttaatc ttaggatagt
      421 taaaatcctt aactgttgtt tcgatattat taaagactgt acttttcata tttgttaaag
      481 ttgattcatt taaaagcatt gtgatttgag atgtggagcc actatgatct ttgtagatta
      541 tattgactgc ctcttctaaa ggtaaataat attcatattt acattttata ttctgttggt
      601 ggagataatt tattaatcct cgcaaggagg taacaatttc tttctttata tccctactgg
      661 cgtcgattcg atttttaatt ttaatataat cagaaattga tatgtccacg aggcttcctt
      721 ttatttttaa gcccggatag gttttgcgta atgtttcatc caaaatttgt tcacttattc
      781 tggacatttt tttgttactt gctatttcaa atgcactgta cataatattc aagatagatc
      841 ttatatttct aaagtcaaaa tcttcatata atatttttat ttgcgagaaa agttcctttc
      901 tttgaccatc agtaatagta gtattaagat tagaaaattt aatatattct aatactatat
      961 cagagatttc ctcaaaagaa tttgatccgg cgagatcgat tttgtaatta gccttctcca
     1021 acctatcata aattgaacta ttttctgagg ctattttaag ataggatgag ggagtaagaa
     1081 ttagcattaa gattgtatta gaaatatggg cattaataag agccttcata aatgaaagtg
     1141 tttcttcatt gttatcaaac tcgtcgaatt gatacaaaga aatcttgtta aataatttta
     1201 aattgatttt tgataaagtc gaaagacgat ttatcatatc cattaaagtg attgattcat
     1261 tattttcaaa ttgattctgt attataattt tgattgtaga tatgtcattt tttgaaaaat
     1321 cttcatctcc aagaacatta tcaatatatc ctaaatcagg ctgcaatcta ttttctaata
     1381 tttgaaggat tttattatca atacctctac ctgatataga ttcaaaaaat cctaatttaa
     1441 atattttttt cgcaattttg ttatcagatt taattagatc ttttatataa taaagtaatt
     1501 ctttttttaa attgtacaaa tactctggtt caaaaccgct aatcatagat tgataaatac
     1561 ttggaatatt tttagggtat atttgtgcca tatcgagata agaaataatt gctttttcat
     1621 ttgttcctga tatttttata ttaagggtga gatgtgtttt tcctgaacct acatcttgaa
     1681 taatagtaat tattctgaat ttttccctac tatcgttagt ttctgtttgt tttacaagat
     1741 cttctataca tgtcaaaatt gaatttctag attcttggtg cctttttcca cctaaaacct
     1801 gaacatcttc taaattaggg gtaggactac ttggaaaagg atttttgttg aggttatatg
     1861 gatacaatta caaacacctt acatacccat ataccaatcc acgaatcata attccttcat
     1921 taccgcctgt agacaattca tatttagacc tattttcgtt aactatttgt tcgacaaggt
     1981 catagaattc tttttctgaa atctcatatt tattagagag atcatttcta agcgtgacta
     2041 atggaaccca tccaattgaa tcagagtatt tgcatatagt taaatcaaaa tcttcgctaa
     2101 agctttgtaa attaataacc ttttggggat taggaatact attttcaaag gtatggctat
     2161 tagtagttgt tgctaagatt gaatccatta aaacaatcat ttttccttct aatttttcta
     2221 catgtttatc aatagaagtc gataagtttt gaaaagaaat ctgaacttct tttaatagtt
     2281 caagagtata tttgaatttt ggatcggaat ccacgagata ttgaaaataa ctatctttgt
     2341 gccaacaata atttgtactc ccttttttag atacaataat tttattttct tttatccacg
     2401 tattcaagat attatccaga ttaactgatg caaattcttt ggttagatca gtttttttca
     2461 gtccagatac acctgaagaa aaaattttgt caaatatttt ttcttctaaa gacatatagt
     2521 acaattttga ctttcttata aaagatactt tgtaagttta tacaatataa ttagctaatt
     2581 tagtttaact tttaatatag aatcatctaa agataaatgg aatgatgaaa tcctattctg
     2641 aaacatgatg aaagcactag ggtatctgac cgaatatagt tgtataaatc acatactaaa
     2701 gtttaagata atccataatt atcatggacc atccatattt agactaatat tagtagtata
     2761 ttgtgaattt tagttttagc ataatttatt atttattaag atttcttggc cattatgagt
     2821 gttcattgta ttatcaatct
//
LOCUS       DATCMF010000430         2071 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_585371, whole genome shotgun sequence.
ACCESSION   DATCMF010000430 DATCMF010000000
VERSION     DATCMF010000430.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2071)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2071)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2071
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_585371"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(96..1496)
                     /gene="sufB"
                     /locus_tag="VIL14_05475"
     CDS             complement(96..1496)
                     /gene="sufB"
                     /locus_tag="VIL14_05475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufB"
                     /protein_id="HEY8523192.1"
                     /translation="MTTEELNMDYSKYDFKDSTDLYVYTSKKGLSRGTIEEISRIKNE
                     PQWMLDFRLRSYDIFMKKPMPVWGGDLSKINFQNIFYYTKASEKQSKSWDDVPDSVRK
                     TFDKLGIPEAEKKFLAGVGAQYESETVYHNLREDLSKQGVIFSDTDTAVKEHPDILKK
                     YFGKVIPPEDNKFAALNSAVWSGGSFIYVPPNVKIELPLQAYFRINAENIGQFERTLI
                     IADEGSEVHYIEGCTAPVYTTESLHSAVVELIAKKDAKIRYTTIQNWSKDVYNLVTKR
                     AYAYENARVEWIDGNIGSKLTMKYPGVYMLGRNAHAEVVSIAFAGSDQHQDAGAKAVH
                     LAPDTTSRITSKSVSKQSGRTTYRGLLHVAKGATGVKSNVRCDALLLDETSRTDTYPY
                     VEVNEDDATISHEASVGKIGEDQIFYLMSRGFSESDALSLIVGGFIEPFTKELPMEYA
                     VELNRLVKLEMEDSVG"
     gene            complement(1591..>2071)
                     /locus_tag="VIL14_05480"
     CDS             complement(1591..>2071)
                     /locus_tag="VIL14_05480"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: protein motif:HMM:NF014641.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004852 - uroporphyrinogen-III synthase
                     activity [Evidence IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HEY8523193.1"
                     /translation="KKHTISVKQIPQDHSSQGIIDLFSKLKYNKYDAKIIIPRSKKAD
                     KYLKEKLVGLGFVVDEFYIYNVLRADVDSVWIEFFDLLRKEKIDSLIFTSPSNVNYFI
                     EILQQQASDLLPLVCKIKMVLSIGPLTSKELVKYNIPFSESKDHSLEGLYERLFIKE"
BASE COUNT          629 a          374 c          308 g          760 t
ORIGIN      
        1 ggttcttcga agttttttat aaaattgcca aaattttttt ctagcaaaga tagttggtac
       61 atgttataat tttcacttta aaaaaagaag tattgttaac cgacagagtc ttccatttcg
      121 agtttgacaa gtcgatttaa ttctactgca tattccattg gtaattcctt tgtaaatggt
      181 tctataaatc cacccactat aagtgacaag gcatcggact ctgagaatcc cctgctcata
      241 agatagaaaa tttgatcttc gccaattttt ccaacactag cttcatgaga aattgttgca
      301 tcatcttcat tcacttctac atatggatat gtatctgttc ttgatgtttc atcaagtaaa
      361 agtgcatcac atcgaacgtt tgacttgaca ccagtagcac cctttgcaac atgcaataga
      421 cctctatatg tagttctacc agattgttta ctaacagact tacttgtaat tctagatgtg
      481 gtatcaggag ctaaatgaac agcttttgct cccgcatctt gatgttgatc cgacccagca
      541 aaggcaatcg atacaacttc tgcatgagca tttcttccaa gcatataaac cccaggatat
      601 ttcatagtca atttacttcc aatatttccg tcaatccatt ctactctagc attttcatag
      661 gcatacgctc tttttgttac taagttataa acgtctttac tccaattttg aatagttgtg
      721 tatcttattt ttgcatcttt ctttgcaatt aattcaacaa cagcagaatg caaggattca
      781 gttgtataaa ctggagcggt acaaccttca atatagtgta cttctgatcc ttcatcagca
      841 ataattaaag tacgttcaaa ttgtccgata ttttcagcat taattctaaa ataagcttgt
      901 aatggaagct cgatttttac attgggtgga acatagataa aagaaccgcc tgaccataca
      961 gcactgttta atgcagcgaa tttgttgtct tctggtggta taaccttgcc aaaatacttc
     1021 tttaagatat ctggatgttc tttaactgct gtatcggtat ctgaaaatat taccccttgt
     1081 tttgataaat cttcacgtaa gttatgatat acagtttctg attcatattg agcacccaca
     1141 ccagctagga attttttttc ggcttctggt attcctagtt tatcaaatgt ttttctaaca
     1201 gagtcaggta catcatccca gcttttactt tgtttttctg atgcttttgt ataataaaat
     1261 atattttgaa aattaatttt tgataaatca ccaccccata caggcatagg ttttttcata
     1321 aaaatgtcat aagatcttaa tcgaaaatcg agcatccact gcggttcatt tttaattcta
     1381 ctgatttctt caatagtccc gcgcgaaaga cccttcttac ttgtatatac atataagtca
     1441 gtagagtcct taaaatcata tttactataa tccatgttaa gttcttctgt tgtcatgtat
     1501 ttcataacgg cgttatgtta tataaatttt acaatccctt atattaaaaa aatgtattat
     1561 tgtaaaagtt ttatatattt tatttaaatt ttattctttt ataaaaagcc tttcataaag
     1621 cccttctaac gaatgatctt tagattcgga aaaggggata ttatatttaa cgagctcttt
     1681 gctggtaagt ggcccaattg ataataccat ttttattttg caaactaaag gcaatagatc
     1741 ggaggcttgt tgctgtaata tctctataaa ataattaaca ttggatggac tcgtgaaaat
     1801 taaagagtca attttttctt ttctcagaag gtcaaagaat tcgatccaga ctgaatcaac
     1861 atctgcccgt agtacattat aaatataaaa ttcatcaact acgaaaccta agcctacgag
     1921 tttctctttt agatatttat ctgctttctt actacgcgga attattatct tagcatcata
     1981 cttgttatat ttcaatttgg aaaagagatc tataattcct tgagaagagt gatcttgagg
     2041 gatctgtttc acgcttattg tatgtttttt t
//
LOCUS       DATCMF010000431         1826 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_453798, whole genome shotgun sequence.
ACCESSION   DATCMF010000431 DATCMF010000000
VERSION     DATCMF010000431.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1826)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1826)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1826
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_453798"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(169..615)
                     /locus_tag="VIL14_05485"
     CDS             complement(169..615)
                     /locus_tag="VIL14_05485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19e"
                     /protein_id="HEY8523194.1"
                     /translation="MVVNLKKKRELVARMLNVGSNRVKFEPDKLDDIADSITREDIRS
                     LIKNGVIWTSKPKGTSRGKAKAKLEIKKKHGTGAGSKKGRKTARTGKKDLYVKKIRAM
                     RYHLKVLKDRNDVNREIYWSLYKKINGGQIRSLTHLRDTVKDRKSQ"
     gene            complement(621..1043)
                     /locus_tag="VIL14_05490"
     CDS             complement(621..1043)
                     /locus_tag="VIL14_05490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32e"
                     /protein_id="HEY8523195.1"
                     /translation="MVINKELLEKRKKVSQHRPKFVRQESWRYDRLAENWRKPKGKDN
                     KMRLQVSGVPQLVKVGYRGPKVARGLHPSGYVDNLVYNTNDLLSLDSKKDAVRIGHIV
                     GKLKKKQILTKAAELGLKVLNPGKDSKLQNKSQIKENE"
     gene            1187..1810
                     /locus_tag="VIL14_05495"
     CDS             1187..1810
                     /locus_tag="VIL14_05495"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004784 - superoxide dismutase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase"
                     /protein_id="HEY8523196.1"
                     /translation="MGKYELPPVPYSYDALEPYIDARTMEIHHTKHHQTYTDKLNAAL
                     EKCSPEIQEKDIVEILSNLDQVPADQKSAINFNGGGFDNHRIFWHNMKANGGGEPSGS
                     IANAINSSFGSFSDFKEKFSSTTTLIQGSGWGWLVYNPSTNKVEYKAMPNQTSPRTEG
                     LIPLLGCYVWEHAYYLKYQNKRPDYISAWWNTINWEDVSQRFDKINK"
BASE COUNT          589 a          325 c          267 g          645 t
ORIGIN      
        1 tacatttccc aatataaagt acttggtaga aggtttaaat gtattacttc aaactaatct
       61 ggatggggaa aagggatctc aggttattag tttaagagaa aagctaatca atagatccag
      121 ttcaataata aatgatttta actaattatt aatttatctt ttgaacactt attgtgactt
      181 tcgatctttt acagtatctc gtaagtgagt taaggatcga atttgaccac cattgatttt
      241 tttatataat gaccaatata tttcccggtt aacatcattt ctatctttta atactttcaa
      301 atggtatctc attgctctta ttttttttac gtacaaatct ttttttcctg ttcttgctgt
      361 tttacgaccc ttcttagaac ctgcacctgt tccatgtttc ttttttattt ccaatttagc
      421 tttagcttta cctcgagaag tccctttggg cttggatgtc catataacac catttttaat
      481 taaggatctt atatcttccc ttgttataga atcagctata tcatcaagct tatcaggctc
      541 gaatttaaca cgattagaac caacattaag cattcgagcg actaattccc gtttcttttt
      601 aagatttaca accatatctt ctactcattc tcctttattt gtgatttatt ttgtaattta
      661 gaatcttttc ctgggttcaa aacttttaat cccaattcag ctgctttagt caaaatttgt
      721 tttttcttta attttccaac tatatgacct attcttacag catctttttt tgaatctaat
      781 gataacagat cattggtatt atagactaaa ttatcaacat atcctgatgg atgaagtccc
      841 ctagcgacct ttgggcctct atatccaact tttaccaatt gaggaacgcc agaaacttgt
      901 agtctcattt tattatcttt ccctttaggc ttcctccagt tttctgcaag cctgtcgtat
      961 ctccagcttt cctgtcttac aaatttaggt cggtgttgag atactttttt ccgtttttct
     1021 agcagttcct tattaataac catgagtaag cagttaaaat agaattttaa atttcaataa
     1081 atatgtttcc ctctgacaac gaagaaagta ggtataaaat caagtcaatg ttaaaaaaat
     1141 atactagata acacaaaggt taataattac aaaaaaaaat atatttatgg gaaaatatga
     1201 attacctcca gtaccttaca gttatgatgc actagaacca tatattgacg caagaactat
     1261 ggaaatacat catacaaaac accatcaaac ttatacagat aaactcaatg cagcacttga
     1321 gaaatgttct cctgaaattc aagaaaaaga tattgtggaa atattatcta atcttgatca
     1381 agttcctgct gatcaaaaaa gtgcaatcaa ttttaacgga ggaggatttg ataaccatcg
     1441 aatattttgg cataacatga aagcaaatgg aggaggtgag ccaagtggat ctattgctaa
     1501 tgcaataaat tcgtcatttg gaagtttttc agactttaaa gagaaattct cttctactac
     1561 tacattgatt caaggaagtg gttggggttg gcttgtctac aacccatcta ccaataaagt
     1621 agaatacaaa gcaatgccaa atcagaccag tccaagaaca gaaggtttaa taccactttt
     1681 aggatgttac gtatgggaac atgcatacta cctcaaatat cagaacaaac gacctgacta
     1741 catttctgct tggtggaata ctataaactg ggaagacgtt tcgcaacgtt ttgataagat
     1801 caataaataa agtttttttt caatta
//
LOCUS       DATCMF010000432         1592 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_454209, whole genome shotgun sequence.
ACCESSION   DATCMF010000432 DATCMF010000000
VERSION     DATCMF010000432.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1592)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1592)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1592
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_454209"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            130..414
                     /locus_tag="VIL14_05500"
     CDS             130..414
                     /locus_tag="VIL14_05500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523197.1"
                     /translation="MKEEEAWNLIRPVCRELDELVNLGKVKFLSGFHSEREGSYKIYL
                     ECSKIHLSSRGIFDKIGDIEYQNNKLRIGFSSNKMPLNLMIDMTNDMTNT"
     gene            complement(433..789)
                     /locus_tag="VIL14_05505"
     CDS             complement(433..789)
                     /locus_tag="VIL14_05505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523198.1"
                     /translation="MISELLECINELTKKINQIENDIQNAIGIVIKEYRTTTEKMDEN
                     QSYFLSGIQYGIPGKSYLLTSKGIEVLGEETIEIDVFITQVINYANNPSRKIEVLKDL
                     VTHLQKFLESMNNSSS"
     gene            complement(866..1354)
                     /locus_tag="VIL14_05510"
     CDS             complement(866..1354)
                     /locus_tag="VIL14_05510"
                     /inference="COORDINATES: protein motif:HMM:NF015513.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HEY8523199.1"
                     /translation="MISHWFSRVNSVIPRGFSRQYILNLLKEKPMSGKEIIDFAIYES
                     EGKWKPSPGLIYPMLGRLLEEGLISETENGKYKVTHKGVGIAEDIQSIQKILQKQLDV
                     MFRFGSIGRFMAMDLIDRVSSIGSTLSSNLDKMTEQERDKYKEFLITELKKIEKQEKE
                     LK"
BASE COUNT          511 a          244 c          207 g          630 t
ORIGIN      
        1 taaactttat tcccataaac ccagaatatg ctgaattcaa atttgttata aaataattga
       61 agttaccttt atctattttt tatataacgc aacatttttt attttgtaat gtttctatac
      121 tttattgatt tgaaagaaga agaagcttgg aatttaataa ggcctgtctg tcgagaattg
      181 gatgaattag ttaatctagg aaaagtaaaa ttcctatctg gctttcatag tgaaagagaa
      241 ggctcatata aaatttacct tgagtgcagt aaaattcatc tttcctcaag agggattttt
      301 gataaaattg gagatattga atatcaaaac aataaactcc gaataggttt tagtagtaat
      361 aaaatgccgt taaatcttat gattgatatg acaaatgata tgacgaatac ttaatcccta
      421 ccgatttgtt atttaggacg agctgttatt catactttcg agaaattttt gtagatgagt
      481 aactaggtct tttaacacct caattttcct acttggatta tttgcataat ttataacctg
      541 agtaatgaat acatcaattt caattgtttc ttctcctaag acctcgattc ctttagatgt
      601 tagtaagtag gattttcctg gtattccata ctgaatacct gataaaaaat agctttgatt
      661 ctcatccatt ttttcggtag tagttctata ttcttttatt actataccga tagcattttg
      721 aatatcgttt tcaatttgat taatcttttt tgttaattca ttaatacact ctaaaagctc
      781 cgaaatcaca gtactctttg atattgcatt tctttaagca tttataattt tccctattct
      841 atctaatcaa aataaaattt taattttact ttaattcctt ttcttgtttt tcgatctttt
      901 ttaattctgt aattaaaaat tctttatact tatcacgttc ctgttcagtc attttatcca
      961 aattagaact taatgtcgaa cctatagatg atactctgtc aattagatcc atagccataa
     1021 accttcctat acttccaaac ctaaacataa catctaattg tttttgtaat atcttttgta
     1081 tcgattgaat atcttctgca attccaacac ctttgtgtgt aactttatat tttccatttt
     1141 ctgtctctga aattagtcct tcttctaata atctgcctag cataggataa ataagacctg
     1201 gggatggttt ccattttcct tcgctttcat aaattgcaaa atctatgatt tctttgccgc
     1261 tcatgggttt ctcttttaac aagtttaaaa tatattgtct agagaaccct ctgggtataa
     1321 cactatttac tcgcgaaaac caatgggaaa tcatatattt ataatatcac tagcgattta
     1381 ttaatatttc tctaaattag tcggctactc atcagaattt ttgaatagta tataataata
     1441 gaataataaa gtattaaaaa aatatatatt gaattttatt aaaggtttat taatgactat
     1501 gaaatgtcct gtgtgcggaa acattatgat atggttaaat gggtctatat gtcatgatcc
     1561 tccagttaaa tattattctt gcagagaatg ta
//
LOCUS       DATCMF010000433         2484 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_255625, whole genome shotgun sequence.
ACCESSION   DATCMF010000433 DATCMF010000000
VERSION     DATCMF010000433.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2484)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2484)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2484
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_255625"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            142..267
                     /locus_tag="VIL14_05515"
     CDS             142..267
                     /locus_tag="VIL14_05515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523200.1"
                     /translation="MTAKAMIIAMATPVVTNNNDFLFIAQVKGAKLTKIRHVSLI"
     gene            440..829
                     /locus_tag="VIL14_05520"
     CDS             440..829
                     /locus_tag="VIL14_05520"
                     /inference="COORDINATES: protein motif:HMM:NF002586.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YnfA family protein"
                     /protein_id="HEY8523201.1"
                     /translation="MLYNGSKSKTILITLLFFFLAGLCEIGGGYLVWLWLRDNMGWYL
                     GLLGGFVLFLYAIVPTFQPSHFHRIYAAYGGIFIIMSVLWGWIFEGIAPDNYDIIGTI
                     IAIIGVAIIYYMPRKDEKEKSLWQSKQ"
     gene            811..1152
                     /locus_tag="VIL14_05525"
     CDS             811..1152
                     /locus_tag="VIL14_05525"
                     /inference="COORDINATES: protein motif:HMM:NF002586.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YnfA family protein"
                     /protein_id="HEY8523202.1"
                     /translation="MAIETVDPVFSVALFFVAAIMEISGGYLVWLWIKEKKTIALALL
                     GAIILFVYGIIPTLQPAHFGRVYAAYGGIFIISSIIWGRIVDKKTPDRYEIIGSVTAV
                     IGAAIIFYAPR"
     gene            complement(1387..1755)
                     /locus_tag="VIL14_05530"
     CDS             complement(1387..1755)
                     /locus_tag="VIL14_05530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523203.1"
                     /translation="MIENQCESNCECVETQSSSGNNNSANECCQMTNKTSNSSCCSDD
                     PIAAAKSLLERSFFTALTEVHVEKLKKQIETEWGSTIDKAVDLTIKTVAKQWQASLSK
                     YAVNKEFYSELEKIFKTTKE"
     gene            1843..2301
                     /locus_tag="VIL14_05535"
     CDS             1843..2301
                     /locus_tag="VIL14_05535"
                     /inference="COORDINATES: protein motif:HMM:NF013777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEY8523204.1"
                     /translation="MTEQKLLDGDDNKNREKSQFIIDGMNCTCCPVFNTLSIIGKKFT
                     LLLLRNMIFLKQKRFNEFLNSIEEINPKTLSIRLKELEKDRLIKREVFNETPVRIEYY
                     LTEKGKALQPILEQMGLFSMKYCCEMVFENPDPSKIDKLTSKSFRKYSTA"
     gene            2326..2454
                     /locus_tag="VIL14_05540"
     CDS             2326..2454
                     /locus_tag="VIL14_05540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523205.1"
                     /translation="MKIRIQIGGILEAYERILNSDVRYRFVIDLKSLTKINNFDDN"
BASE COUNT          808 a          374 c          415 g          887 t
ORIGIN      
        1 tcaatatttt tattatgatt tactccttct tcagtcgtcc tttctgagtg agatggcttt
       61 cctgttataa tctcatctag tacttctgca ctttcatctc catgaccttc aggttctaat
      121 gccgaaagtt tcatctacat attgactgct aaagcaatga ttatagctat ggcaacgcca
      181 gttgtaacca acaataatga ttttcttttc attgctcaag taaaaggagc taaacttact
      241 aaaatccgtc acgtttcctt aatttgagtc tcagagttga gaaatgagaa gtatattagc
      301 catagagtca tgatagggtt tggtattttt cttataatac gatttttctg aattagaaat
      361 actattcata ttgaatctaa aaatatagaa tagtgttagt aaaccatgat taatatttat
      421 cacatcttta atattcatat tgctttacaa tggtagcaaa agcaaaacca ttctaatcac
      481 tttattgttc ttcttccttg ctggtctctg tgagataggt ggaggctact tagtttggtt
      541 atggttacgt gataatatgg gttggtacct cggattgtta ggaggattcg ttttatttct
      601 ttatgcaatt gttccgactt ttcagccatc acattttcac aggatttatg cggcttacgg
      661 aggaatattc ataatcatgt ctgtattatg gggttggatc tttgaaggaa ttgcacctga
      721 taactatgac attattggca ctattatagc gataataggt gttgctataa tttactatat
      781 gcctcgaaaa gatgagaagg aaaaatcatt atggcaatcg aaacagtaga tccggtattt
      841 tcagtagctt tattctttgt agcagccatc atggagataa gtggaggata tttagtttgg
      901 ctttggataa aagaaaagaa aacaattgca ttagccttgc taggtgcaat tattctgttt
      961 gtctatggta taatacctac acttcagcca gctcattttg ggagagtata tgcagcctac
     1021 ggcggaatat tcattatttc atcaataata tggggtagaa tagtagacaa gaaaactcca
     1081 gatagatatg aaataatagg atcggttact gctgtaattg gagctgcgat aatattttat
     1141 gccccacgtt gatcctatat tatggaatca agattacatt ttaaattatt ctagatcttt
     1201 ctatcatttt tgtccgacct aagaatatag tggatggaca caagtctcac ttccgacctc
     1261 gtactcgtgg agtcacatat ttaacaaatt taaggcaaat aatttagtat tagaaataga
     1321 atatattgtt atagaaattt caataaatac ttgcaaagta aaaaaaagtt atggttatac
     1381 tcctacttat tctttagtag ttttaaatat tttttctaat tcactataga actctttgtt
     1441 tacagcatac tttgagagag atgcttgcca ttgttttgct actgtcttaa tagttagatc
     1501 caccgccttg tcaattgtac ttccccattc tgtttcaatt tgttttttca atttctccac
     1561 atgtacttct gtaagtgcag taaagaatga tctttccaaa agtgattttg ctgcagcaat
     1621 agggtcatca ctacaacatg aactattact tgttttattt gtcatttgac aacattcatt
     1681 tgcactatta ttgtttcctg aactgctttg tgtttctaca cattcacaat ttgattcaca
     1741 ttgattttct atcatatata ttacctagtg ttatctacta tagttaggta agtatataaa
     1801 ttagtaagtg aaagtttagt tagtaggtga aagattagta agttgactga acaaaaacta
     1861 ctagatggtg acgacaataa gaatagagaa aaaagtcaat ttattattga tggtatgaat
     1921 tgcacatgtt gtccagtttt taataccctt agtataatcg gaaaaaaatt taccctttta
     1981 ttattacgca atatgatttt cctaaaacaa aaaagattta atgaatttct taattcaata
     2041 gaggaaataa atccaaaaac tctttctata cgtcttaaag aattggagaa agacagattg
     2101 ataaagcgag aagtatttaa cgaaactcct gttaggatag agtactatct tacagaaaag
     2161 ggaaaggcat tacagccaat attagaacaa atgggtttat tctctatgaa atattgttgc
     2221 gaaatggtat ttgaaaatcc tgatccctca aagattgata aacttacttc gaaatctttt
     2281 agaaaatatt caactgcata aatttattca tttaaccatt ttttaatgaa aatacgaatt
     2341 cagattggtg gaattcttga ggcctatgaa cgtatattga atagcgatgt acgatatcga
     2401 tttgtaatag atttaaaatc tctgacaaaa ataaataact ttgatgataa ttaacaaaca
     2461 tcctcatagg tgtcaagtaa ggat
//
LOCUS       DATCMF010000434         1550 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_526363, whole genome shotgun sequence.
ACCESSION   DATCMF010000434 DATCMF010000000
VERSION     DATCMF010000434.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1550)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1550)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1550
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_526363"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..305)
                     /locus_tag="VIL14_05545"
     CDS             complement(<1..305)
                     /locus_tag="VIL14_05545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523206.1"
                     /translation="MSKLVKRMLFVGTWLINKIGSYYKKAMAFINNYKEDDPFIYNKS
                     QLISKLTNNIIDHEKLVTIPFLNKRLAYRWIILGVLSCIATMAMYAETMLIPAIPNL"
     gene            787..981
                     /locus_tag="VIL14_05550"
     CDS             787..981
                     /locus_tag="VIL14_05550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523207.1"
                     /translation="MMSKGKSKSKLASLFNFKEKFSKSKGVDEVMKCKECNMEFNTKE
                     RMNAHKKIAHSGRGDKKKKH"
BASE COUNT          562 a          206 c          208 g          574 t
ORIGIN      
        1 atcaaattgg gaatagcagg tataagcata gtttcagcgt acattgccat agttgcaata
       61 caacttagta cccctaagat aatccaccta tacgctaagc gtttattcaa aaaaggtatg
      121 gttaccaatt tctcatggtc aataatatta ttagtcagtt tcgatattaa ttgggactta
      181 ttgtatatga atggatcatc ttccttatag ttattaataa aagccattgc tttcttatag
      241 tatgagccaa ttttatttat cagccaagtc ccaacaaaca acattcgttt aactagttta
      301 gacaaatata atactcataa tgatgatagt ttccctagag cggatcaata catgaataaa
      361 gtattaataa atactgaaac tattaccagc aatttttttg ttaatgttaa gtttaacatc
      421 tattatgtta aatagtttaa tacgtcattt tttttatacc ataatctaaa tattttcatt
      481 tagtatattc gtatatctct gaatttggaa tttgtaacta caacaaatac gtcatgctta
      541 aaaaaaactt tatcatattc tttgttttca atatgaaaac aataaaatag tgaatcttga
      601 agcaaaatgc tttagcttgg acatgtacag cgcgttctct aaatctatta gatttaaata
      661 tccaacctaa ttgtcaagtg tgttctgctt tttatttaag agatattgat aagctttttg
      721 aattgaatat tattattagt taactaagtt accttataat taaataaggg aactgtctcc
      781 atttttatga tgtctaaagg aaaaagtaaa tcgaaactcg caagtttatt caacttcaaa
      841 gagaaatttt ctaaaagcaa aggagtggat gaagtcatga agtgtaaaga atgtaatatg
      901 gaatttaata ccaaagaacg aatgaatgcc cataaaaaaa ttgcacactc aggaagagga
      961 gataaaaaga aaaaacatta gacatatttt taactataaa gagtaaggtt tttaaattct
     1021 gatttaattg taatatttgc gaaatttact gattctattt ctaatattat aaggatatat
     1081 aatatatctg atacctgtta aaggtaaagg aatatatcct atcgtacatc ttattcagcc
     1141 aataatatcg gtaaataagt tcctttattt agacctttga atttctttat cttttacatt
     1201 tttactctag tcacaatcaa tgttatgaaa attgattata aaatgttctt gtacgtcagg
     1261 tatagatact ttccttagta ttttattcat tatcatactt tcataactat tcttaacagt
     1321 gataggcata ttacacctgt ttcaaataac atttgctggt aatagtgatt atgtttataa
     1381 tattctttca atatagctag agatcacaca tatgtacaat tggttatctt tttattttct
     1441 gacatgattg atcagtgtaa aacaaattat ttattggcta aattagagaa ataatcatat
     1501 cgtaccatat tataaagtat gttataatcg caaaatttgt tgaaatgtat
//
LOCUS       DATCMF010000435         1605 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_526469, whole genome shotgun sequence.
ACCESSION   DATCMF010000435 DATCMF010000000
VERSION     DATCMF010000435.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1605)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1605)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1605
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_526469"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            65..1426
                     /gene="aspS"
                     /locus_tag="VIL14_05555"
     CDS             65..1426
                     /gene="aspS"
                     /locus_tag="VIL14_05555"
                     /EC_number="6.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004815 - aspartate-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006422 - aspartyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA(Asn) ligase"
                     /protein_id="HEY8523208.1"
                     /translation="MNNSSSNILREEELGNWRKSHYSSEINPSLEGKSVIIMGWISSI
                     RDHGNIQFIMLRDKDGDTQIIAKKGQCPDLVYEQVLQLKEHTSLGVSGKVISQKKAPN
                     GIEIIPLELKVFSIPLHAPPFMVQNRNPAGIDTRLDFRAIDLRRKYLQDIFIIRNNIL
                     KYIRNFLSNEKFIEVNTPKIIATASEGGTALFPIFYYEREAFLAQSPQIYKEQLTMAF
                     EKVFEIGPIFRAEPSRTNRHLSEATSIDIESAFVDYNDIMVLLEKMIQFIIKSLSEDD
                     NSKNSPELDIDPKKINDNNKPFPRLKYSELIERFRNIGEKVRWGDDISPQLIKKLDDD
                     RLNNNFYFITDWPTAAKPFYVKENQDDSKICESFDLMYGSLEISSGSTRISNKEILID
                     RMKKKGLNLNSFDYHLRIFSYGVPPHAGCGIGLERLLMTLTKIDNIRDAILYPRDIDR
                     LAP"
BASE COUNT          631 a          193 c          284 g          497 t
ORIGIN      
        1 atattagaaa cgttatggat aaattagtct agtgtaattt tcatatgtta tttaggtatt
       61 aaaattgaat aatagtagta gtaatatatt aagagaagag gaattaggaa attggagaaa
      121 atcccactac tcatcagaga ttaatccatc tctggaaggt aaatcagtta ttataatggg
      181 atggatttcc agtattaggg accatggcaa tattcaattt attatgttaa gagataaaga
      241 tggagacact caaataattg ctaaaaaagg tcaatgtcca gatttagtat atgaacaagt
      301 cttgcagtta aaggaacata catctctagg agtaagtgga aaggttattt ctcaaaaaaa
      361 agcacccaat ggaattgaga taattccact agaactaaag gttttttcaa ttcctctaca
      421 tgctccgccg tttatggtac agaatagaaa tcctgcagga attgatacta gattagattt
      481 tagagcgata gatttgagaa gaaagtattt gcaagatatt tttatcatcc gtaataacat
      541 tttaaaatat attcgcaatt ttctttcaaa tgagaaattt atagaggtta atacacctaa
      601 gataatagct acagcttcag agggaggaac tgcacttttc cctatattct attacgagag
      661 ggaggcattt ttggctcaga gtcctcagat atataaagaa caacttacaa tggcttttga
      721 aaaagtcttc gagataggac caattttcag agctgaacct tctcgtacta atagacactt
      781 atcagaagct acatcgatag atattgaatc tgcttttgtt gactataatg atattatggt
      841 attattagag aaaatgattc aatttattat aaagtcattg tctgaagatg ataatagtaa
      901 aaatagtcct gaattagata ttgatccaaa aaaaattaat gataacaata aaccatttcc
      961 aaggttaaaa tattcagaat taattgaaag atttagaaat attggagaaa aagtaagatg
     1021 gggagatgat atatctccgc agctaattaa aaaacttgat gacgatcggt taaacaataa
     1081 tttttatttt ataacagatt ggccaacagc agctaaacca ttttatgtga aagagaatca
     1141 agatgattca aagatttgtg aatcttttga tttaatgtat ggatcattag aaatatcatc
     1201 tggaagcaca agaattagta ataaagaaat tcttatagat agaatgaaga aaaaaggatt
     1261 aaatttgaat tcatttgact atcatttgag aatatttagt tatggcgtgc ctccacatgc
     1321 tgggtgtgga ataggattgg aacggctatt aatgactctc acaaaaatag ataatattcg
     1381 tgatgctata ttatatccaa gagatatcga tagacttgcg ccatagaaga aacaaagaag
     1441 ggaaagagaa gtggtgataa atcaaacatg attacaaaag atcaactaaa acatttgagt
     1501 aaactttcaa agatagattt aactgaaaat gaatttgaaa cttatactaa acaaattgaa
     1561 aagataataa aatatttgga taaattagat gaaatttcat ttgaa
//
LOCUS       DATCMF010000436         2513 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_255800, whole genome shotgun sequence.
ACCESSION   DATCMF010000436 DATCMF010000000
VERSION     DATCMF010000436.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2513)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2513)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2513
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_255800"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..485
                     /locus_tag="VIL14_05560"
     CDS             <1..485
                     /locus_tag="VIL14_05560"
                     /inference="COORDINATES: protein motif:HMM:NF014841.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEY8523209.1"
                     /translation="NMNIIYNNRHQLPKTIEKKLNAKFVTFDQLLENSDFLSIHTSFN
                     KDNFHLIDSTELKKMKKTSFLINTSRGGIINEISLINALKNKWIAGAALDVFEKEPLP
                     NQNELSKLKNVILLPHLGSATVQTRERMSKVAAINLHNILANKKPLYIVNRELLQNLC
                     "
     gene            complement(508..741)
                     /locus_tag="VIL14_05565"
     CDS             complement(508..741)
                     /locus_tag="VIL14_05565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523210.1"
                     /translation="MPPSYILSVIENEEYLIGVSCLEHLEAIKSKIKKLQQTKSIPNG
                     RLNIDNIKMVSTNCIKGSPEDYQEVYSKRLSEN"
     gene            961..1128
                     /locus_tag="VIL14_05570"
     CDS             961..1128
                     /locus_tag="VIL14_05570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523211.1"
                     /translation="MGSRKRRTIKPQRKTKSVEGRCPKCTTIVRYVSGPVGDEIYECK
                     GCMSKYHIDEL"
     gene            1272..1502
                     /locus_tag="VIL14_05575"
     CDS             1272..1502
                     /locus_tag="VIL14_05575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523212.1"
                     /translation="MYSSGMPLELIDLAKSKLVKEYGVLADDIVLIEVPEGVPMGAVM
                     VTLWPHYLSVSKVKRVRDGSIYAPQLFNIDLD"
     gene            complement(2031..>2513)
                     /locus_tag="VIL14_05580"
     CDS             complement(2031..>2513)
                     /locus_tag="VIL14_05580"
                     /inference="COORDINATES: protein motif:HMM:NF015952.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-dependent dephospho-CoA kinase family
                     protein"
                     /protein_id="HEY8523213.1"
                     /translation="ELIKQEEISKQKINSLVKDSKALITVGDATTEKIISFGLTPDLS
                     IIDCVERRIRRTESKILELKTFFLTTTHYKQYQCKNPKGTITKEAYITIKKILMKGEQ
                     AIIFIDGEEDMLALAVFALAPLDSVVFYGQPLEGVVSVKINAKIKNKSRHLLDSIGVE
                     "
BASE COUNT          869 a          366 c          390 g          888 t
ORIGIN      
        1 tcaatatgaa tattatatat aataatagac accaattacc taaaacaata gaaaagaaat
       61 tgaatgccaa atttgtgacg tttgatcaat tattagaaaa tagtgatttt ctttccattc
      121 atacaagctt taataaggat aattttcatt taatcgatag tacagaacta aagaaaatga
      181 aaaaaacttc atttctaatt aatacttcaa ggggaggtat aataaatgaa atctctttaa
      241 taaatgcact aaaaaataaa tggattgcag gagcagcttt ggatgtattt gaaaaagaac
      301 cattaccaaa tcaaaatgaa ctatcgaaat tgaaaaatgt catcctttta cctcatcttg
      361 gcagtgcaac agtacaaacc cgggagagaa tgtctaaagt ggcagctatt aatttgcaca
      421 acatactcgc aaataaaaaa ccattataca ttgttaatag agaactatta caaaatcttt
      481 gttaagtgcg atgatttcat attcttatta attttcgctt aaacgtttag aataaacctc
      541 ttgataatcc tctggtgatc cctttataca attggtagaa accattttga tattgtctat
      601 atttaatcgt ccatttggaa tggatttagt ttgttgtaac ttttttatct tggattttat
      661 tgcttctaaa tgctcgaggc atgacactcc aatgaggtat tcctcatttt ctataactga
      721 taatatgtag gagggcggca tgtcacattg ggtatcttga gtgaaaaaag aacatttttt
      781 tggtagtgtc aattataaag ataagtattt ggaatcattt atttaattta aactaatctc
      841 ccaagttaat tcaaatacat tcttttaaaa atgtaaaaaa agtaaaaatg taataggatg
      901 aaaattctaa aagttttaag acgcgtttat aaatcagtat atcaattaca ataaaataag
      961 atgggaagta ggaaaagacg cacaattaaa cctcaaagaa agactaaaag tgttgaaggt
     1021 cgatgtccga aatgtactac tatagtaaga tatgtatctg gacctgttgg tgatgaaata
     1081 tatgaatgta aaggatgtat gtcaaagtat catatcgatg aactctaaat atattgtatc
     1141 aaacatttat ttatcataag ttttaattta ctatctaaat tcatattctt ctccttataa
     1201 caatttatta tactttctag ataataatta catacatgaa tcagaaaata gaatactcag
     1261 ggcaggttta cttgtatagt agtggcatgc cgctggaact cattgatcta gctaagtcca
     1321 aattagtcaa ggaatatggc gtattggctg atgatatagt cttaattgag gtccccgaag
     1381 gtgttccaat gggagccgtc atggttacac tttggccaca ttatctttcg gtctcaaaag
     1441 taaaaagagt aagagatgga tcaatatatg ctccgcaatt attcaatatc gatcttgact
     1501 aataattttt atagctatag ttaaaaatta atgtcccttt agtcaatgaa ttctgtgagg
     1561 atttcttatt tctgtagaag agaccgacat tctgattgtc cagtggatct tcctattagt
     1621 gatgtttgtg gtcctaactt tgactgttcc tttgatataa aactaacaaa atgtgaatgt
     1681 tcctgtcata cttaaggaat aaatataaca ttttcatact tcaaacgcca ttttttatag
     1741 taaaatttag taaaaactat atagaaattc ataaacaatc ttttgatgga aaactttagg
     1801 aatgtttgtt cattttgtaa ttcgcctatt tctataggtc aaagtatatg taaagattgt
     1861 atcaacttat atgatattaa gatcagtaat catgagaatg atggatgtgg atgtgactcc
     1921 tgaaactgaa aattgagctt tttcttaatt ataatatagg ggtcagaaaa tggtatcaca
     1981 aatcattaga tatttcttca tacagccacc acttcatcat ccccgcggat ttattccact
     2041 cctatactat ctagcaaatg tcttgatttg ttttttattt tagcatttat ttttacgcta
     2101 actactccct ctagtggttg accataaaaa actaccgaat ctagaggagc aagagcaaaa
     2161 actgctaagg ctagcatatc ttcctcacca tcaataaaaa taatagcttg ttctcctttc
     2221 attaatattt tttttattgt aatatatgct tcttttgtta tagtgccctt tggattttta
     2281 cattggtatt gcttgtagtg agtagtggtc aaaaagaaag ttttgagttc taaaattttc
     2341 gattctgttc ttctaatacg tctctccaca cagtcaatta tggataaatc gggagtgaga
     2401 ccaaatgaaa taattttttc agttgtagca tcacctactg ttatcaaagc tttagaatct
     2461 ttaaccagag aattaatttt ttgtttagat atttcttctt gttttattaa ttc
//
LOCUS       DATCMF010000437         2357 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_527339, whole genome shotgun sequence.
ACCESSION   DATCMF010000437 DATCMF010000000
VERSION     DATCMF010000437.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2357)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2357)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2357
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_527339"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            476..706
                     /locus_tag="VIL14_05585"
     CDS             476..706
                     /locus_tag="VIL14_05585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523214.1"
                     /translation="MSHSNSTTVKLTTSLNTHDGIDHKVFVTNTFLYCNTCGKSIEKN
                     PILCYIFIDYFCSKKCHDKKHKINSEKIDNLD"
     gene            1101..1328
                     /locus_tag="VIL14_05590"
     CDS             1101..1328
                     /locus_tag="VIL14_05590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523215.1"
                     /translation="MSDNDNDDDTSKKVVDYNINENQFAIEYTAIFEDGTSDSYIENK
                     IIKRTAAERLPIWVEYIKKKEEKSKKEKSNK"
     gene            complement(1837..2040)
                     /locus_tag="VIL14_05595"
     CDS             complement(1837..2040)
                     /locus_tag="VIL14_05595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523216.1"
                     /translation="MDIKCSECHKELTDTGKCVGCSLSPEVCTCHTTSEYDTTGKFVE
                     ANVTRTINKVEYDTTGTNEEAEP"
BASE COUNT          923 a          281 c          297 g          856 t
ORIGIN      
        1 atgatagcag gtggccctag aaacctgcgg gcccgtctgg aggagtgccc tccatgtaat
       61 aaggttctat catatcgtat ttagctttta ttgttagaaa cttattttaa aatgtttaat
      121 tgcttttgta ttaaagtatt ataatataca aaaacaatat gagatgttat tggacattgt
      181 aaccgaatat aatagtaaag ttacatttct caacattcaa aagaaaaaaa gttgcatcta
      241 taaagtttat aggattatac aaattatcag ttatatctat tattcaaaaa tcagaaaaca
      301 atcttatgga aaactggagg taaaatattc ttatattaat acaactctca attctaataa
      361 aagactaata aaagtattat ttgtaaaaaa gtttcttaga aacttctagt gtataatact
      421 gaaaattagt tttaataaat ttatataatt gataaaaata atatttataa taattatgag
      481 tcattcaaac agtactacag taaaattaac aacatcatta aatacccatg atggaattga
      541 tcataaagta tttgttacta atacattttt atattgtaat acttgtggaa aaagtattga
      601 aaaaaatcca attttatgct atatattcat agactatttt tgtagtaaaa aatgccatga
      661 taaaaaacat aaaataaatt cggaaaagat tgataatcta gattaaaata ttcatttggt
      721 atatatttaa aaagtagtga taaaacaatt aaataatata aaatcaaaaa taatttctta
      781 tggtttttca ttatttccaa ttgtttttgt tgtgctatct attgataagt gcaaaattaa
      841 tcactatttc tctaaataaa ttattttaac acatatttac tgtaaatttt gattctctag
      901 aatatggatg ttgtaaatta gtgttgacga gtggatgtta tgcagaggct acaatatata
      961 acagccactt aactaaactg tatttattat tgacttggac tttgtagcag catttatact
     1021 aatagaataa gtataataaa tcaattgttg atttttggca agaagcgaat ttatttgagt
     1081 aaattgtact tcttctgcag ttgtcagaca atgataatga tgatgatact tcaaaaaaag
     1141 ttgttgatta taacataaat gaaaatcaat ttgcaataga atatactgct atatttgaag
     1201 atggaacttc tgattcttat attgaaaata aaataataaa aagaacagca gcagaaagac
     1261 ttcctatttg ggttgagtat atcaaaaaga aagaagagaa atctaaaaaa gaaaaatcaa
     1321 acaaataata gttattttta tatcaaataa taaaaattgc attttaaact tgatttaaag
     1381 atgaacatca aaaagaatac gacctagact atatcctaca taaatgttta attttgtcat
     1441 aacttgtatc actgttcatt tggatattgt aactatatat aatatatcat ttaacttcat
     1501 tcttaaattg tatttatagc gcaggattaa ccattatcaa atattaattg gagttatcca
     1561 ctttatcatt tctaaatttc tcaaacatgt tgattaatac aatagcatta atatattaaa
     1621 tagtaacttg ctttattaaa tatctttatg ttttggtcac atttacaaca gtaacaatgt
     1681 ctataagaat tataagcatt taactataaa gatatttcca ttattgcttt aataataaga
     1741 tttttactta tttcaaagaa tattgaaaat tcgagtcaga atattcattt aacagtttcg
     1801 gcggatagct actgtttttg acataatatt ctagttctat ggttcggctt cctcatttgt
     1861 accagtagta tcatattcca ctttattaat ggtacgagta acatttgctt ccacgaattt
     1921 accagtcgta tcatattccg aagtagtatg acatgtacaa acttcaggag ataaactaca
     1981 tccaacacat ttaccagtat cagttaactc tttatgacat tcagagcatt taatatccat
     2041 ctaaaaagta gatattgatt taatgtataa aaagattttt tatttaattg taagaattaa
     2101 attaatagta cctaaaatgc tctataattt aattttcccc cagaatattc ttcataagaa
     2161 tcctatggaa atttgttcta catggtagaa tagaagggaa taaattcgtt ttagaaggaa
     2221 tttcatctta tatattacaa agtctagaag cctataatga taaaacgatt atagtaacat
     2281 ttgaaatgcc tgtacaacca aatgataaaa attaataatt atattctaat caattgatta
     2341 agcaattagt ttttgaa
//
LOCUS       DATCMF010000438         2015 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_527373, whole genome shotgun sequence.
ACCESSION   DATCMF010000438 DATCMF010000000
VERSION     DATCMF010000438.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2015)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2015)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2015
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_527373"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(203..1030)
                     /locus_tag="VIL14_05600"
     CDS             complement(203..1030)
                     /locus_tag="VIL14_05600"
                     /inference="COORDINATES: protein motif:HMM:NF016906.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NosD domain-containing protein"
                     /protein_id="HEY8523217.1"
                     /translation="MAYMLAAIISFSAVAAITMQPISLSAQTQPAQQQQPTAQQQQPS
                     SQPLAISPSCGQVITQNVILTSNLNCAESDGLIVGASDIVVDLNGHTISGPDVDSDTK
                     TSSKVGIMIPNMNNVVVQDGTIEGFQAGILMTGSQNVEVKGIVAKNNQIGLFSTGASI
                     LNAHLSIIMNNQIGIAGHSTQQSTIENNILFQNTLAGVTLVNSDNSVITLNSITESGN
                     GLYIDNQSNQNNVNFNNVLLNTIDVNNANGLPVNTNGNTYDQNNCMTANPSGICIGK"
     gene            1367..>2015
                     /locus_tag="VIL14_05605"
     CDS             1367..>2015
                     /locus_tag="VIL14_05605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523218.1"
                     /translation="MKIAIAGAGVAGSYLGFMLQKLGHDVTIFESSKEKTHWAVCAWG
                     ASRNILEKFSRDVGLNFNDYIFHVGKKLRMELPNNKEEYLELIGLVTYNKQKWEYDLL
                     KELPVNYDFKCSSSFPFMDYDYVLDCTGLHRSLLPKSTTDFIIPAYEYLIENPATTSS
                     DNEFYVIGYKGARGYFWYFPIDKGRAFVGAGDIDRKYYGIKEFFHNNPSAKIIKKI"
BASE COUNT          652 a          279 c          337 g          747 t
ORIGIN      
        1 aataataaag gaaaaggttc attgaggctg atgtataata tgctctctag ttcgtttttc
       61 agtccaaaga acttcagaca gtatccttat tttagaacaa cattattaaa ataagttaag
      121 acaagttttt atttacttac ttttttgctc tttataatca aaacaaaaat aaaaaaatta
      181 gataaaattc ttttttgtct agttacttac caatacatat accgcttgga ttagcagtca
      241 tacaattgtt ttgatcatat gtattgccgt tggtgtttac tggtaacccg ttagcattgt
      301 ttacgtcgat tgtattcaaa agaacattgt taaagttaac attgttttgg ttactttgat
      361 tgtctatata aagaccattt ccagattcag taatagaatt caaagtgata acagagttat
      421 ctgagttaac taatgttact cctgccaagg tattttggaa aagtatgtta ttttctatag
      481 tgctttgctg tgtagaatgt cctgcaatac caatttggtt attcataatt atggacagat
      541 gtgcattgag tatgctagca ccagtactga ataatcctat ttggttattt ttagcaacta
      601 ttccttttac ttcaacattt tgagatcctg tcattaatat gccggcttgg aatccttcaa
      661 tagtaccatc ttgtactact acattgttca tatttggtat catgattcct actttacttg
      721 aagtctttgt atcgctatct acatctggac cagatattgt atgtccgtta agatctacaa
      781 caatatcgct cgcaccaact ataagaccat cactttctgc acaattcaag tttgaagtta
      841 atataacatt ttgtgtgata acttgaccgc atgatggact tatggctaat ggttgtgatg
      901 atggttgttg ttgttgtgct gttggttgtt gttgttgtgc tggttgggtt tgggcactta
      961 aagatatggg ttgcattgtt attgctgcaa cggcagagaa tgagataatc gctgccaaca
     1021 tatatgccat tagtgttcta ttcatttagt agatggtttg gtactgacat atttatgtta
     1081 atctattatt tttattataa ctaagtatag acgattttta ttgtaactat ttattagtac
     1141 acttgatact ttaattttaa aaaatgcttt actattttaa aaaatttaat accttattct
     1201 acaaaaatta aaatatttaa ttattttaca attatacata tagaagagac agtcaattct
     1261 ttttgatatt ttagataata aattttctat cttcataaaa ttataaagac tattaaacta
     1321 gttttaataa acaagaatta taaggaaaat ttaagatcgt tttaatatga aaattgctat
     1381 tgctggagct ggagttgcgg gaagttattt aggattcatg ttacaaaaac taggacatga
     1441 tgttacaatt tttgaatctt ccaaggagaa aacccattgg gcagtttgtg cttggggtgc
     1501 ttcaagaaat atacttgaaa aattttctag agatgtagga ttaaatttta acgactatat
     1561 ttttcatgtt ggaaaaaagt tacgaatgga attgccaaac aataaagaag aatatttaga
     1621 acttattggg ctagtcactt acaacaaaca aaaatgggaa tatgatctct taaaagagtt
     1681 gccggttaat tatgatttta aatgttctag tagttttcct tttatggact atgattatgt
     1741 tcttgactgt acaggccttc atcgttccct acttccaaaa tcaacaactg attttatcat
     1801 ccctgcttat gaatatctca tagaaaatcc tgctactacc agtagtgata atgagttcta
     1861 tgtgataggt tacaaaggag caaggggata tttttggtac tttccaattg ataaagggag
     1921 agcctttgta ggtgctggag atattgatag gaaatattac ggaattaaag aattttttca
     1981 taataaccca tcagcaaaaa tcataaaaaa aatag
//
LOCUS       DATCMF010000439         1745 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_527412, whole genome shotgun sequence.
ACCESSION   DATCMF010000439 DATCMF010000000
VERSION     DATCMF010000439.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1745)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1745)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1745
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_527412"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            245..1030
                     /locus_tag="VIL14_05610"
     CDS             245..1030
                     /locus_tag="VIL14_05610"
                     /EC_number="7.6.2.7"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEY8523219.1"
                     /translation="MMQFKNQYPPQKVSLSLKNVSKKYAQRNSETTTVLENINIQILD
                     GEIITILGKSGCGKSTLLNLIAGFENSYGGEILLNGKPVKDISPERIMMFQESALFPW
                     LTAFQNVEIALKMTKVPKNQREKVVKHYLEIVGLSDYSNSYIHQLSGGMKQRVSLARA
                     LSLNPKILLMDEPFAALDITIKKSLYKELLDLHKKTRKTILFVTHNINEAVLLGDRVI
                     VMSPKLYGIKKEYIIDIPKDQRIDNSSIKNIINEITVDLYDNP"
     gene            1192..>1745
                     /locus_tag="VIL14_05615"
     CDS             1192..>1745
                     /locus_tag="VIL14_05615"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HEY8523220.1"
                     /translation="MSEILPKLSLPSPLAVGQTIIELLFDFTLVKGTAFTLWRLFLGF
                     ILSLAIGLIIGLLMIKFQQFGKTMSSFAVGLQSFPSIAWIPFAILLIGFNDFGILFVV
                     VMSSVFSVMLSTYSGLRNVPPIYIRAAKNMGAKGFSLFRYVLIPAATPTLIMGMRQAW
                     SFAWHALIGAEMLITTLVGLGYILS"
BASE COUNT          610 a          256 c          279 g          600 t
ORIGIN      
        1 ctatttttga tatattaatt tttctaattt atattacttc tataatataa aaattaatga
       61 acatatcagt accttaaaat tgttcaagtt gaattatatt ggaagcactc ccgcatttag
      121 aagtatacaa tcacaaacaa aaagtttgtt acaattctca atttgtatgc catttttact
      181 catattaaca gtattaagca tatttaagac caattaaata taataaaatt cctaataaag
      241 ggatatgatg caatttaaaa atcaatatcc cccgcagaaa gtatctttga gtttaaagaa
      301 tgtatccaaa aaatatgcac aaagaaattc tgaaacaact acagtcttag aaaatatcaa
      361 tattcaaatt ttagatggtg agattattac aattcttgga aaatcaggat gtggtaaatc
      421 cacccttctt aatttaattg caggatttga aaattcttat ggtggagaaa ttttacttaa
      481 tggaaaacct gtaaaagata taagccctga acgaataatg atgtttcaag aatctgctct
      541 ttttccatgg cttacagctt ttcaaaatgt tgaaattgca ttaaaaatga caaaagttcc
      601 caaaaatcaa cgagaaaaag tagtcaaaca ttatctagag attgtcggtt tatctgatta
      661 ttctaattct tatattcatc agctatcagg aggaatgaaa caaagagtat ctctcgcccg
      721 ggccttatca ttaaatccga aaattttact tatggatgaa ccctttgcag ctttagatat
      781 tactattaaa aaatccttat acaaagaact tttggatctt cataaaaaaa ctagaaagac
      841 tatactattt gttactcata atataaatga ggctgtatta ctaggagata gagttattgt
      901 aatgtctcca aaactgtatg gtataaagaa agaatacatt attgacatcc ctaaggatca
      961 gagaattgat aatagctcaa taaagaatat aattaacgag attacagttg atctttacga
     1021 taatccttaa tatatgaata gtaaggtctg aaaagtttgg agacacatat aaaaagcagt
     1081 aagaataaag taagcttaag caaaaaaata gtaaataaga taataaacaa ggatacatta
     1141 agtttattta tttttatcag tgtattctta gcattatggc agttagttta catgtcggaa
     1201 atattgccaa agttatctct tccttcgccc cttgccgtag gccaaacaat tatcgaatta
     1261 ttatttgatt ttaccttagt taaaggtaca gctttcactt tatggcgatt gtttttaggc
     1321 tttattctgt ctcttgctat tggattgatt ataggattgc tcatgattaa atttcaacaa
     1381 tttggaaaaa ccatgagttc gtttgctgta ggactacaat cctttccgag cattgcatgg
     1441 attccatttg caatattatt gataggattc aatgattttg ggatactttt tgtggttgtg
     1501 atgagttctg ttttttcggt aatgctttca acttatagtg gacttaggaa tgttccacca
     1561 atctatattc gagcagctaa aaatatgggt gcaaaaggct tttccctctt cagatatgta
     1621 ttgattcctg ctgcaactcc tacattaata atgggaatga ggcaggcgtg gtcgtttgct
     1681 tggcatgctc taataggagc tgaaatgtta attacgaccc ttgtagggtt aggttacata
     1741 ctttc
//
LOCUS       DATCMF010000440         1993 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_527427, whole genome shotgun sequence.
ACCESSION   DATCMF010000440 DATCMF010000000
VERSION     DATCMF010000440.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1993)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1993)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1993
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_527427"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(262..1239)
                     /locus_tag="VIL14_05620"
     CDS             complement(262..1239)
                     /locus_tag="VIL14_05620"
                     /inference="COORDINATES: protein motif:HMM:NF017773.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEY8523221.1"
                     /translation="MKNWSVYKDLLARHRRHPPFTSDLLNILNKKLTIVSTRNHFNLE
                     TGQLNLSHNIEDYDSHNVPGLNGNPYPDNNELAIYIHGVWTGQIAVKEQIDRTNLSLI
                     SNEYNIPVVGFSWDSTTAINPSGWTIAKSIANQNGPKLAKFLSDFRTNCPNHNIRIIA
                     HSLGAQVVESALISLNNNERWKNNSEYNITSIHLIGAAISDRATSKNSQFGTAIDNTV
                     TNFYNLYNPKDNLLRSAYIKTEKENPLGLFGLNKAEPFPSNYTERNVMLEIPPLKKAS
                     GIYKPFVDNTVSEWGNNHSGYIGFRGVNGKLKNDGAINVIVADWKTKNR"
BASE COUNT          647 a          285 c          289 g          772 t
ORIGIN      
        1 ggactgagtg gtgaatgaaa tttaatttct ttagaacatt atttgttact agtaataata
       61 acttaatatc tagttccggt ggaatactgt agaaatttca ataccatttt ctattttact
      121 agttattgtt aatattataa ttattatttt tcatttctgg aatctttcct tttaagatat
      181 taatgcaatt tagttaattt atcttttcaa taagcatttg ctatttcatc ttttgttttt
      241 tttttgcttg tttggcctta tctatctatt cttagtcttc caatctgcta caattacgtt
      301 aatagctcca tcattcttta acttaccatt aacacctcta aacccaatat atccagaatg
      361 gttatttccc cattcagata ctgtgttatc aacaaatggt ttgtatattc cacttgcctt
      421 cttcaagggt ggaatttcta gcataacatt ccgttcagta taatttgaag gaaatggttc
      481 tgctttgttt aacccaaata agcccaacgg attttccttt tctgtcttta tgtatgcact
      541 tcgaagcaga ttgtctttag gattataaag attataaaag ttggttactg tattgtcaat
      601 ggcagttcca aactggctgt tttttgatgt tgctctatcg ctaatggctg ctcctataag
      661 atgtatagaa gtaatattat actctgaatt gttcttccat ctttcgttat tatttaaact
      721 tatcaaggca ctttcaacta cttgtgcacc taaagaatga gcaattattc taatattatg
      781 atttggacaa ttggttctaa aatcagacag aaattttgct agcttcggtc cattctggtt
      841 tgctatagat ttagcaatag tccatcctga aggatttata gcagtagttg aatcccagct
      901 aaatcctact actggaatat tatattcatt tgaaatcaat gataagttgg ttctatctat
      961 ctgttcttta actgcaatct gtcctgtcca tactccatga atatatattg ctaattcatt
     1021 attgtcaggg taaggatttc catttaatcc tggaacatta tgagagtcat aatcttctat
     1081 attatgagac aaattcagtt ggcctgtctc aaggttaaaa tgattgcgag tcgatactat
     1141 tgttaatttc ttattcaata tattcaaaag atcagatgta aaaggtggat gacgacgatg
     1201 tcttgctaat aagtccttat aaacagacca atttttcata cgttgtaatt tgcaatattc
     1261 attaaatacc tttctacaat tataaagcaa aacataattt agttttgtcc tttaaaacta
     1321 actttgattg aacttgtgga gaaaatggtt tgcttaataa aaaattagta gttgttgcat
     1381 ataatatttt gatatatgaa tatgaaatga atgactattt atattatgct agaaattcgg
     1441 gcattacaat agttatacaa caaatacaac tttagaattt accaaaaatt gttaaagata
     1501 ctttggaata agtattatag caaatttcaa ctagcaaggt tgttttagcc ttagttcctt
     1561 taacaaattg gttcattcat atagacagaa agatggttgg aagtagattt ctccatgtag
     1621 tagggttcta ttacattgta tttagctttt attattagaa cttattttta gtaagagcta
     1681 aagttaagga ttataaatat atggaatcag tgaactttga atatttgcca ataatgaacg
     1741 tcaacgtttt gttatgtaat aataagataa ccaataaaat gattcctcta tcttttcaaa
     1801 cttatttgac aaaattagtt tgacaaaatt agttaattta agagagcgtt caaagattga
     1861 ttcaaaaatg atagtcaatc ttacgagtta ggagatattt aaatattttt atgaagttca
     1921 ttctccttac aaactagatg atgctttata ttttataaaa aatagctata aaagttaagt
     1981 cacataaaaa taa
//
LOCUS       DATCMF010000441         1760 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_587307, whole genome shotgun sequence.
ACCESSION   DATCMF010000441 DATCMF010000000
VERSION     DATCMF010000441.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1760)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1760)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1760
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_587307"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1760)
                     /locus_tag="VIL14_05625"
     CDS             complement(<1..>1760)
                     /locus_tag="VIL14_05625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="helicase-related protein"
                     /protein_id="HEY8523222.1"
                     /translation="KEIDIDVHHGSLSREIREDTESKLRTGVAGIVVCTSSLELGLDI
                     GAVDLVIHYGSPRQVSKLMQRIGRSRHQKRRSAKGLIVTNIPDDEFEAYALVNRMKNR
                     SVEDQPMHSHSLDVLAHHLVGLSLQSREDVEVSKALSIVNKAYPFKDVSLIDINACLD
                     LLDKNYIIRYDPAEQTFKRRIKSYKYYFENLSMIPFVLKFQVIDIISKKRIGTLDQKF
                     VGDYGEKGNVFVLKGAQWRIVSVDETKAEVNVEPLYGTKINVPYWVGELIPVDYNTSK
                     EVGIIRNLAVNKKFDLVNNVINKFEKTFNVIPDSKNIVVESSHLQNQIVIHSTLGTKV
                     NNTLASLFSTMISSKVGHVVETRSDPYRILLTSSVRMTRYHIESVLEGSFDVDAILIA
                     SFGNTYHLNWKVWMVAKRFGMISKEALYDKKIARMIYDKYSKTPISAESIRELIHDKY
                     DTSLTKEILNQFKNKEIKLHWFQVDDFSELAKPVVDHSTKFSATPMSIETGIMELVKE
                     RLVKTKQKLICIRCGKWERTFEVKDLPENIICPSCKSRLVTSTFWYDTDLRKIITKKL
                     ERKKLPPEEDHKFDRAWKVS"
BASE COUNT          537 a          330 c          242 g          651 t
ORIGIN      
        1 tgaaactttc catgctcgat caaatttatg atcctcttcc ggtggtaact tttttctttc
       61 taattttttg gttataattt ttcgcagatc agtatcatac caaaaggtag aagtaacaag
      121 tcttgattta caagaaggac aaataatatt ttcaggaaga tcctttactt caaatgtcct
      181 ttcccatttt ccacatctta tgcatattag tttttgtttg gtttttacca atctttcttt
      241 tacaagttcc attattccag tctctatcga catgggagta gcagaaaact tggtagaatg
      301 atcaactact ggctttgcca gctctgaaaa gtcatcaact tgaaaccaat gcagtttaat
      361 ttctttattt ttgaattgat ttaaaatttc ttttgttaaa gatgtatcat atttatcgtg
      421 aattaattct cgaattgatt ctgcgcttat tggcgttttg gagtacttgt cataaatcat
      481 acgtgcaatt tttttatcat agagggcttc tttacttatc ataccaaacc tttttgctac
      541 catccaaacc ttccaattaa gatgatatgt attcccaaat gaggctatga gaatagcgtc
      601 tacatcaaat gaaccctcta aaactgattc tatatgatat cgtgtcattc taacagaaga
      661 tgttaaaagt attctatagg gatcacttcg tgtttctaca acatgaccaa ccttggaaga
      721 aatcattgta gaaaaaagtg aggcaagagt attgtttacc ttggtaccca aggtagaatg
      781 aataacaatc tgattttgta aatgagagct ttctacaaca atattttttg aatccggaat
      841 aacattgaaa gttttttcaa acttatttat aacattatta acaagatcaa actttttatt
      901 tactgctaaa ttccttatta ttccaacttc tttggaagta ttataatcga ctggaattaa
      961 ttctcctacc caatatggaa catttatttt tgttccatac aatggttcga cattaacctc
     1021 tgcttttgtt tcatctacag acacaattct ccattgcgcc ccttttaaca caaaaacatt
     1081 ccctttttcc ccataatctc caacaaattt ttgatctaag gttccaattc ttttcttact
     1141 aataatatct attacttgaa actttaacac aaagggtatc atggagagat tttcaaaata
     1201 atatttgtaa gattttattc ttcttttaaa agtctgttca gctggatcat atcgtataat
     1261 gtaattttta tctaaaaggt ctaaacatgc attgatatca atcagggaga catctttaaa
     1321 tggatatgct ttattgacta ttgaaagagc ttttgaaacc tctacatctt ctcttgattg
     1381 aagtgagaga ccaactaaat gatgagcgag aacatcaagt gaatgagaat gcattggttg
     1441 atcttctact gacctattct tcattctatt taccagtgca tatgcttcaa attcatcatc
     1501 tggaatattc gtaactatta acccctttgc agatcttctt ttttgatgtc tgcttcgccc
     1561 aattctttgc atcaattttg atacttgtct tggcgaacca taatgtatta caagatccac
     1621 tgcaccaata tctaatccca attccaatga tgaagtgcac acaacaatac ctgctactcc
     1681 agtccttaac tttgattctg tatcttcccg tatttctcgt gataaagacc catgatgaac
     1741 gtcaatatca atctcttttt
//
LOCUS       DATCMF010000442         2513 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_587359, whole genome shotgun sequence.
ACCESSION   DATCMF010000442 DATCMF010000000
VERSION     DATCMF010000442.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2513)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2513)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2513
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_587359"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            317..1174
                     /locus_tag="VIL14_05630"
     CDS             317..1174
                     /locus_tag="VIL14_05630"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase"
                     /protein_id="HEY8523223.1"
                     /translation="MSTMGYAHPEVLVDTQWVEDHVKDSQVRIAEVDYDPKANYELGH
                     VQGAILFDWKQDINDPVSRNVLTKQACEDLLQRAGVNGDTTLVLYGDFNNWFAAFAFW
                     VFKYYGIKDVRIMNGGRKKWLEEDRVVSKDISNYSKGNFRASEPDKNIRVFLNEVKQA
                     LVAKDRIKMVDVRSPKEFTGEILAPPEYPTEHAQRGGHIPAAENIPWAQAVNDKDGTF
                     KSADELRQLYESKGITRDKEIIAYCRIGERSSHTWFVLKYLLGYPNVKNYDGSWTEWG
                     NMIANPIEK"
     gene            1917..>2513
                     /locus_tag="VIL14_05635"
     CDS             1917..>2513
                     /locus_tag="VIL14_05635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OB-fold nucleic acid binding domain-containing
                     protein"
                     /protein_id="HEY8523224.1"
                     /translation="MKLSDPVLQEEDIGKLRRTHYSNEINSNFDDSEVVIMGWVSSIR
                     DHGNMQFVTITDRYGDIQVVAKRKECTEKLFLHIQQLKEHASVAIRGKVRSQEKAPSG
                     SEVIPLELRVFSMAKKAAPFMIQSKISVGIDTRLDLRAIDLRRNFLKSIFHIRNTALN
                     AIREFLTDHGFIEVNTPKMIATATEGGAALFPIFYYDRE"
BASE COUNT          880 a          412 c          507 g          714 t
ORIGIN      
        1 aaaaagaaat ttcataaaaa caaatcgggt tagatgttac aagggtttgc agataggcta
       61 gcaaaaatag ctgcatcgta aataaactat ggagttaaag ggttttgagt gcaagaaaaa
      121 tgcaaaaaca atggatatcg caaagtgtaa ctatgaggct gctataatag tggcatctat
      181 tgggtaggct atatagggag agaatactgc attaacgcac aattatcctt gtcttttcct
      241 tattgtatag atatacctca tttattgcca ttgtctaaaa tctaatatac atcttgtatt
      301 atatctctca gatgatatga gtacaatggg ttatgcacat cctgaagttt tggtggacac
      361 gcaatgggta gaagaccacg taaaggattc acaggtaaga atagcagaag tagattatga
      421 tccaaaagca aattatgaat taggacatgt tcaaggtgcc atattgtttg actggaaaca
      481 agatatcaat gatccagtta gcagaaacgt gctaaccaaa caagcgtgtg aagatctact
      541 acaaagagct ggggttaatg gtgatacaac actcgtactg tacggtgact ttaacaactg
      601 gtttgcggca tttgcatttt gggttttcaa atactatgga atcaaagacg ttaggataat
      661 gaacggggga agaaagaaat ggttagaaga agatagggta gttagcaagg acatctctaa
      721 ctattctaaa ggcaatttca gggcttcgga accggataaa aacattcggg tatttctaaa
      781 cgaagtaaaa caagctttag ttgctaagga tagaattaag atggtcgacg tgagaagtcc
      841 gaaggagttc acaggagaaa tcttagcgcc accggaatat ccaacagagc atgctcaaag
      901 aggaggacat ataccggcag cagagaatat tccctgggct caagctgtca acgacaaaga
      961 tggcacgttt aagtctgcag atgagctgag gcaattgtat gaatcaaaag ggataacccg
     1021 cgataaggag ataatcgcat attgtaggat aggtgagaga tcttcacata cttggtttgt
     1081 ccttaaatat ttacttggat atcccaatgt aaaaaattat gatggctcat ggacggaatg
     1141 gggcaacatg attgcgaatc ctattgaaaa ataatagttc taattccatt tattttcctt
     1201 taaatggatt tgtttatagc ataggatgct gaaccaagag tttagttata aaacaaattt
     1261 ttaatttttc tgatataaag tgcaatatga cccgacaaaa aaggaaggct cgcagtgtat
     1321 agacaaccat ttttatcaca ttatgagacc tcttatctcc cctcccatag ttggtagcat
     1381 aatatcacaa tatctctagg agcattttta gcaatctctg cagtctcgtc agaagcattt
     1441 tgtactattg acgtaattcc tatcttctct gcactttctt aacacctgca atgaaagtat
     1501 cctatactag acctaatata tctagaaaaa atatgattac taatactatc accaaaatat
     1561 caatagaact cccatagctg actacaataa agggagtctt ttttttcctt taagactttt
     1621 tgaagtctag ataataatct aagatagacg cataacttta tctctgatcc tatgaaagat
     1681 ttttcattga ttctctaata ctattgaaat cttgtctata agcattttct gcacagaaat
     1741 cttgagtcgc atgaaggcag aaatgggcta aaaataattc tgacagaaaa ggaggtactt
     1801 ctaggtattg ttgagtgtta tgcagatttc gtatacatca agaacaaatc aagaacaata
     1861 aaagcaaaca taataattaa tgtagtggta ccacagcata atcactatta aggtctttga
     1921 aattgagcga tccagtacta caagaggaag atatagggaa actgaggaga acgcattatt
     1981 caaatgaaat taactcgaac tttgatgata gtgaagtagt aattatggga tgggtttcaa
     2041 gcatccgtga ccatggtaat atgcaatttg tcaccataac agacagatat ggagatatac
     2101 aagttgttgc aaagagaaaa gaatgtaccg agaaattgtt tctccatata cagcagttaa
     2161 aagaacacgc ctcagtcgcg atccgtggaa aagttagatc acaagaaaaa gcgcctagcg
     2221 gttcagaggt tataccatta gaattgagag tattttctat ggctaaaaaa gcggctccat
     2281 ttatgattca gagcaaaatc tctgttggta ttgatacgag actggattta agggccatag
     2341 acctacgcag aaactttctc aagagcattt tccatattcg taacactgct ctaaatgcta
     2401 ttagagaatt tttgacagac cacggattta tcgaagtgaa tacacccaaa atgattgcaa
     2461 ctgctactga aggaggagct gccttatttc caatatttta ctacgacaga gaa
//
LOCUS       DATCMF010000443         2362 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_256548, whole genome shotgun sequence.
ACCESSION   DATCMF010000443 DATCMF010000000
VERSION     DATCMF010000443.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2362)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2362)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2362
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_256548"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..515)
                     /locus_tag="VIL14_05640"
     CDS             complement(<1..515)
                     /locus_tag="VIL14_05640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523225.1"
                     /translation="MQSNLNKLFFIYVAKNEEWKKLQEEDWDYVSSMVKFFHWWTKRN
                     FALNFSIDADILPVITGRLFDRMSLAYLLRDHQGRGKSVYHFYLSFFKPFWTDCNVSG
                     YATNNFGMVQWKRPEYIESKEQISKFFADYNCARVSHILLHEILRLKGKSKKEYFDQV
                     HDLWDEHEHKNL"
     gene            853..1725
                     /locus_tag="VIL14_05645"
     CDS             853..1725
                     /locus_tag="VIL14_05645"
                     /inference="COORDINATES: protein motif:HMM:NF024762.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase-like domain-containing protein"
                     /protein_id="HEY8523226.1"
                     /translation="MLDDIDLKINNWIVNTVNSLIKPNKLDKIAECALELSKIIYYND
                     MNMEKYLNEINIMQKELNTKRERSTINFNRPTQIIELINEYMFKEKEFKANIYDYQNP
                     LNNFLNIVIEKRIGIPITLSIIYITLAQSINFKLYPVNFPRHFLVKYVLDDVDNNEII
                     IDPFNQGRIMDDYALKNLMDSFFPNQNIPLTKKLVEKANLSQVMIRILNNVKDSFFEI
                     QEFDKLNIANEMILAIDPKNTFAIRDKGIILHEKDPEKSLEFLNRYLELEPEANDVDI
                     VLKIIKSIREKNNR"
     gene            complement(1797..1961)
                     /locus_tag="VIL14_05650"
     CDS             complement(1797..1961)
                     /locus_tag="VIL14_05650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523227.1"
                     /translation="MTKDKYELSLNEQELQTILDSLSNTIFNEEIKEDARKNAKDLFI
                     KLQKDFPILK"
     gene            complement(2101..>2362)
                     /locus_tag="VIL14_05655"
     CDS             complement(2101..>2362)
                     /locus_tag="VIL14_05655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008251 - tRNA-specific adenosine
                     deaminase activity [Evidence IEA];
                     GO_process: GO:0002100 - tRNA wobble adenosine to inosine
                     editing [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="deaminase"
                     /protein_id="HEY8523228.1"
                     /translation="CLCTHAEANAIMQCALFGNGSSTKGTTLYSTFAPCLECSKMCIT
                     VGIERIVVLHDYPEDGNILLQEADIKLDKLKREDFLPWCKFI"
BASE COUNT          935 a          300 c          298 g          829 t
ORIGIN      
        1 aggtttttgt gttcatgttc atcccataaa tcgtgaactt gatcaaaata ttcctttttg
       61 ctttttcctt taagtcttaa gatctcatgt aataaaatat gtgaaactct tgcacaatta
      121 taatctgcaa aaaattttga aatttgttct ttggattcta tatattcagg tcttttccat
      181 tgaaccatac caaagttatt tgtagcatat ccagatacat tacaatcagt ccaaaagggt
      241 ttgaaaaatg agagataaaa gtgatatact gattttcctc tgccttgatg atctcttaat
      301 aaataagcta atgacattcg atcaaataat cttccagtga ttacaggaag aatgtcagca
      361 tcaatactaa aatttaaagc aaaatttctt tttgtccacc aatgaaagaa tttaaccatg
      421 gaagatacat aatcccaatc ttcttcttgt agttttttcc attcttcatt ttttgcaaca
      481 tatatgaaaa aaagtttatt taaattggat tgcatagtct tatgaaaaat ttatcctaat
      541 tgttattaga acaactataa cgaccactgc aattgtaata atagattata caattacaat
      601 gatgtatact attatttttg aaaagagatg tgatatgagg tttaatcacg tatttcctca
      661 gtagataatt atagccaaaa gattctctat cactaataat attgcaattg ataggtatct
      721 ggaattcatc catatacata ttcctatgta aaaatacaat aaaaaaccta tcgaataata
      781 tcgttaacct aataaagaat aataaaaaat aggaagttaa tcaagaatat attagactgc
      841 ataatatatt aattgttgga cgatattgat ttaaaaatca ataactggat tgtaaataca
      901 gttaattctc taataaaacc taacaagctt gataaaattg cagaatgtgc tttagaactt
      961 tcaaaaataa tttactataa tgatatgaat atggaaaaat atttaaatga aataaatata
     1021 atgcaaaagg aacttaatac aaaaagagaa agatctacta tcaattttaa tagaccgact
     1081 caaataatag agttaataaa tgagtatatg tttaaagaaa aagaattcaa agctaatata
     1141 tatgactacc aaaatccact aaataatttt ttaaatattg taatcgaaaa gagaatagga
     1201 atccctataa cattatcaat aatatatatc actcttgcac aatcaatcaa ctttaagttg
     1261 tatccagtta attttccacg acattttcta gttaaatatg tattagatga tgttgataat
     1321 aatgagataa taattgatcc atttaatcaa ggtagaataa tggatgatta tgctttaaaa
     1381 aacttaatgg atagtttttt cccaaaccaa aatattccat taacaaaaaa attagttgaa
     1441 aaagctaatt tatctcaagt tatgatacga attctaaata atgtcaaaga tagttttttt
     1501 gaaattcaag aatttgataa attaaatata gcaaatgaaa tgattttggc tatagatcct
     1561 aaaaatacat ttgcaatcag ggacaaagga ataatattac atgaaaaaga tccagaaaaa
     1621 tccttagaat tcttgaatag atatttagag ctcgaaccag aagcaaacga tgttgatatt
     1681 gttttaaaga taattaaaag cataagagaa aaaaataata gataagagtg tatagtagaa
     1741 ggttttatat tagacacatt attatttagt ttataaatgg taaaaaaaga ataaacttat
     1801 tttaatattg gaaaatcttt ttgcaatttt ataaataaat ctttagcatt ttttcttgca
     1861 tcttctttaa tttcttcgtt aaatatagta ttgctaagag aatccaatat agtttgtagt
     1921 tcttgttcgt ttagagaaag ctcatattta tctttagtca tatttttcat aattcagtat
     1981 aaagtaatat aaaattctat tcattatgaa atattattat gagatgtaat aaaaaataaa
     2041 taaatattta caccattgag caagatgtaa aaaatagtaa ttattattat agacaattta
     2101 ttaaatgaat ttgcaccacg gaagaaaatc ttctctcttt aatttatcca gttttatatc
     2161 tgcttcttgt aataatatgt taccatcttc aggataatca tgtagaacaa caattctttc
     2221 aatacctaca gttatgcaca ttttactaca ttctaagcaa ggtgcaaatg tactatacaa
     2281 ggtggtgcct tttgtgcttg aaccatttcc aaataatgca cattgcatga ttgcattagc
     2341 ttcagcgtga gtgcataaac at
//
LOCUS       DATCMF010000444         1979 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_390492, whole genome shotgun sequence.
ACCESSION   DATCMF010000444 DATCMF010000000
VERSION     DATCMF010000444.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1979)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1979)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1979
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_390492"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1097
                     /locus_tag="VIL14_05660"
     CDS             <1..1097
                     /locus_tag="VIL14_05660"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY8523229.1"
                     /translation="VIEHFGWRTTFYSVIPIAVMLIIIILRYVQVKEPTEKISTQQDQ
                     KELLNEESKGIDKYPGKQQRQHKLIPNSGTSKVDIKGAILLAITITSFLSALSFVQSS
                     DNNDLLKPFYVSWRILWLSLVGFGSLTAFIFVERRSTSPLIDLKLIARKPILISNIIV
                     IIWGICTFAIFQTIPILVQSPVLTGGFGGNAIDAANIQLPFSVTSLVFGPTTGIIISR
                     IGSSKVTLIGAVITTISLSGTLIFHANAIQLAINLAIVGVGLALLNVGQLNINTTSVS
                     PRNMGVSLGINTLLRYIGSAIGPAVAGMLMQANQNVIKTADGISSAFPSRESYNFIFL
                     FILIAAAITILLSIKIANTKIDQTNVEKQH"
     gene            complement(1070..1324)
                     /locus_tag="VIL14_05665"
     CDS             complement(1070..1324)
                     /locus_tag="VIL14_05665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523230.1"
                     /translation="MGDGTSYLNEVLVRELDVSPEYIEEKTRQMEDIRGRVTLYHGDS
                     VSKDYDINNNKTVGYFWLNKFTDTMMLRQAPYQCCFSTFV"
     gene            complement(1333..1548)
                     /locus_tag="VIL14_05670"
     CDS             complement(1333..1548)
                     /locus_tag="VIL14_05670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523231.1"
                     /translation="MRDRITTANILDDALKNIIKKEEERKNSIVLGIPRGGTIIAGII
                     GKKVSYPVSLILLFQEIFVPRTTKKLQ"
BASE COUNT          611 a          377 c          332 g          659 t
ORIGIN      
        1 acgtaattga acattttggt tggaggacga cattctactc tgtcatccca atagccgtga
       61 tgctaatcat aataatcctg cgatatgttc aggttaaaga accaacagaa aaaatatcga
      121 ctcagcaaga tcagaaggaa ttattaaatg aggagagtaa aggtattgat aaatacccag
      181 ggaagcaaca gagacagcac aaattaattc ccaattcagg tacatctaag gtagatatta
      241 aaggagcaat acttcttgct ataaccatta catcttttct atctgccttg tcattcgtac
      301 aatcatcaga taataatgac ttactaaaac cattctacgt ctcgtggagg atattatggc
      361 ttagccttgt gggttttggt tcacttactg cgtttatatt tgtcgaaaga agatctacat
      421 caccgcttat tgatctcaaa ctaatagctc gtaaacccat attgatatct aatattatag
      481 taattatttg gggtatctgt acatttgcaa tttttcagac aatacctatt cttgtgcaaa
      541 gtcctgtact aactggtggt tttggtggaa atgcgataga tgcagcaaat atacaattgc
      601 cattttctgt tacctctctt gtatttgggc ctacgactgg cattataata tcaagaatcg
      661 gttcatctaa ggtaacactt atcggagctg taataacaac cataagtctt agtggaactt
      721 taatttttca tgctaatgca atacaattag caataaacct agcaatagtc ggagttggtt
      781 tagcgctcct aaatgtaggc caacttaata taaatactac ttctgtttcg ccaagaaata
      841 tgggagtatc tctgggtata aacaccctgt taagatatat aggatcggcc atagggcctg
      901 ctgtagctgg aatgcttatg caagctaacc aaaatgtaat taagacagca gacggtattt
      961 ctagcgcttt tccttctaga gaatcatata attttatttt tctatttatc ctaatagcgg
     1021 ctgcaattac tatattatta tctataaaga tagccaacac aaaaatagat caaacgaacg
     1081 tggagaaaca gcattgatac ggagcttgcc tcagcatcat agtatccgtg aatttattta
     1141 accaaaaata gcctactgtt ttgttattat taatatcata atcttttgat accgagtcac
     1201 catggtataa ggtgactcta cctcttatat cttccatttg tcgcgttttt tcttcaatat
     1261 attctgggga cacatcaagt tctctaacca gaacctcatt gagatagctg gtaccgtctc
     1321 ccattattgc acctattgca acttcttcgt tgtgcgggga acgaagattt cttggaataa
     1381 taatatcaaa ctcacaggat aacttacttt cttgccaata atacctgcta ttattgttcc
     1441 tcctctagga atgcctaaga caattgagtt tttcctttcc tcttctttct taattatatt
     1501 ctttagcgcg tcatctaaga tgtttgctgt ggttattcta tctctcaacc tcagttagaa
     1561 cctatcatgt aggttgtcaa ataacatttt gcatttatgt aatgatgaag tggaagaaat
     1621 atcttctcat ccttggggct atgttaaaaa tatcaacatt tgaagaaagt atagttatga
     1681 aatcccttgt aggtttggca aagatcccca tacatcttat tcagaaatac agttcctctc
     1741 acctacccta cgaggttttc tgtgcgctag taggcatatt tcgtaggtct taccctactt
     1801 cgtatgcttt tcgcacacag agaataatac ttgtgtagaa cagactatat taaacttgta
     1861 gagaatactt acgttaatgg cttatgatac ccagcctctg aatactatat gcacttgtaa
     1921 tacttgtgat cataataata catctgattg tgtcaatgat ataataactt ctacaacac
//
LOCUS       DATCMF010000445         2450 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_125993, whole genome shotgun sequence.
ACCESSION   DATCMF010000445 DATCMF010000000
VERSION     DATCMF010000445.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2450)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2450)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2450
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_125993"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(167..454)
                     /locus_tag="VIL14_05675"
     CDS             complement(167..454)
                     /locus_tag="VIL14_05675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S26e"
                     /protein_id="HEY8523232.1"
                     /translation="MPKKRTSRGRTKGGKGSSGTVHCSQCGAMVPRDKAKKITGRITL
                     VEPTLAKELRAQGAYISPATDVKFYCVSCAVHRGIVKVRSEVERRVNTRLR"
     gene            660..1664
                     /locus_tag="VIL14_05680"
     CDS             660..1664
                     /locus_tag="VIL14_05680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003951 - NAD+ kinase activity [Evidence
                     IEA];
                     GO_process: GO:0006741 - NADP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+)/NADH kinase"
                     /protein_id="HEY8523233.1"
                     /translation="MKIALVGAHPQNTLLISKIKKILDNSFIQTIIMTENNFNLANQV
                     DLVFVIGGDRAILDYFHKVVDESAPVIGIYESESTGFLAQIDVRDLETIIPRLKRNDY
                     RIEEVVRLSVNVDGKEMEPVLNDVAVFPSKSATLMEHILRIDKNDVWHDNSDGVIIST
                     PTGSTAYSMSAGGPMILQNSKVFVAVSVNSVDNTRRPLIFPDNCILEISDILSRYHCE
                     VVLDGGRRLGIKKFLSCSKHQYPAKLVRLIGDSSVTSLIAKKVKIAEELLNMPPSAKL
                     ILKILEYEGSMSQKDLATKTLLPERTIRLSLGHLVNRGYVKKKTSLRDARHRTYEINF
                     "
     gene            complement(1654..>2450)
                     /locus_tag="VIL14_05685"
     CDS             complement(1654..>2450)
                     /locus_tag="VIL14_05685"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003883 - CTP synthase activity [Evidence
                     IEA];
                     GO_process: GO:0006221 - pyrimidine nucleotide
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006241 - CTP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HEY8523234.1"
                     /translation="FIKWSNWKLIAKSFSEYNKEVYIAIVGKYVSLPDSYVSVYQSLS
                     HAAAKLGNKLEVAWIDSEKFDTTPKEKISLLKKFDGILIPGGFGKRGSEGIINVANFA
                     REANVPFLGICFGFQLSIVSFARNVCGINNANSTEIDPNTCDPIVEFMPEQKTINNMG
                     GTMRLGSHKILINSNTIASKIYSKNCIIRRHRHRFEFNKNYLSVLRKNGMILSGYSDN
                     EKRTEILEIPNHKFYFAVQYHAEFDSRPGKPEQAFEAFIKNASLKN"
BASE COUNT          859 a          375 c          380 g          836 t
ORIGIN      
        1 aagaggagta ggatttggag aaagagctga aagaatattg tttctagcta taatgggatt
       61 gcttcctttt tcccattcat tagaatatgg tgttataata gttataggaa tttctattat
      121 tacgattata caaagaatat ataagacatt aaaaatacta gattaattat ctaagtctag
      181 tatttactct tctttctact tcagatctaa cctttactat tcctctatga acagcacaag
      241 aaacacaata aaattttaca tcagttgctg gagaaatata tgctccttga gctcttaact
      301 ccttagctaa agtaggttcg actaaagtta tcctgcctgt aatctttttt gctttatctc
      361 taggaaccat agctccacac tgactacaat gaacagttcc tgaactaccc tttcctcctt
      421 tagtacggcc gcgacttgta cgtttctttg gcatataatt atgattctga atccatactt
      481 taaaggttct ggtaaaatta actcttataa ataaaaatga attaatcata tttcaatttc
      541 tgacctactt cagaaattag agataaaagt aggagataac acataaaata ctaaatttaa
      601 ataataataa caaaaaaatt taactttaaa tgagagatta gataactata aagaaaataa
      661 tgaaaattgc actagttggt gctcatcctc agaatacatt attaatctca aaaattaaaa
      721 aaattcttga taattcgttt attcaaacta ttatcatgac tgaaaataac tttaatctag
      781 caaatcaggt agatttagtg tttgtcatcg gtggagatcg agctatttta gattattttc
      841 ataaagtagt ggatgaatct gctccagtca taggaatata tgagtctgaa tctactggat
      901 ttttagctca aatagatgta cgcgatttgg aaacaatcat tccaagatta aaaagaaatg
      961 attatagaat tgaggaggtg gtgagattaa gcgtaaatgt agatggaaag gaaatggaac
     1021 ctgtattaaa tgatgttgca gtatttccca gtaaaagtgc tacattaatg gaacatatac
     1081 ttcgtattga caaaaatgac gtttggcatg acaatagcga tggagtaatt atatccactc
     1141 ctactggatc tacagcctat tcaatgtccg caggaggtcc tatgattcta cagaattcaa
     1201 aagtttttgt agcagtatct gtgaattctg tagataatac tagaagacca ttaatttttc
     1261 cggataattg catattggaa atatctgata ttttaagtag atatcattgt gaagtagttt
     1321 tagatggtgg aagaagatta ggcattaaaa aatttctaag ctgtagtaaa caccaatatc
     1381 cagcgaaact agtgagattg ataggtgata gttctgttac ttcgttaatt gctaaaaaag
     1441 ttaaaattgc tgaagaatta ttgaatatgc cccccagtgc aaaacttata ttaaaaatat
     1501 tagaatatga agggtctatg agccagaagg atttagctac taaaacgtta ttacctgaaa
     1561 gaacaatcag attatcttta ggtcatcttg ttaatagagg atatgtaaaa aagaaaacat
     1621 cattacgtga tgccaggcat agaacttatg agatcaattt ttgagagaag catttttaat
     1681 aaacgcctca aatgcctgtt ctggttttcc tggcctgcta tcaaattctg catgatattg
     1741 aacggcaaaa tagaatttat gattaggaat ttctaatatc tctgttcttt tttcattgtc
     1801 tgaatatcct gataaaatca ttccgttttt tcttaaaaca gacaagtaat ttttgttaaa
     1861 ttcaaatcta tgcctatgtc ttctaataat acaattcttt gagtatattt ttgaagctat
     1921 tgtattcgag tttattagta ttttatgact acctaatctc atcgttccgc ccatattatt
     1981 tattgtcttt tgttcaggca taaattctac tataggatca catgtatttg gatctatttc
     2041 agtagaatta gcattattaa taccacatac atttctagca aatgaaacaa tagacaattg
     2101 aaatccaaaa catattccaa gaaaaggaac atttgcctct cgtgcaaaat tagccacatt
     2161 aattataccc tcagaaccac gttttccaaa tcctcctgga ataagaatac catcaaattt
     2221 tttaagtaag gaaatttttt ctttaggagt agtatcaaat ttttcagaat cgatccatgc
     2281 tacttccaat ttatttccta gcttagccgc tgcatgagaa agagactgat acacacttac
     2341 ataactatca ggaagagata catatttacc aactattgca atatatactt ctttattata
     2401 ttcggaaaag gattttgcta ttagtttcca gttagaccat tttataaata
//
LOCUS       DATCMF010000446         1632 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_588125, whole genome shotgun sequence.
ACCESSION   DATCMF010000446 DATCMF010000000
VERSION     DATCMF010000446.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1632)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1632)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1632
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_588125"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..520)
                     /locus_tag="VIL14_05690"
     CDS             complement(<1..520)
                     /locus_tag="VIL14_05690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HEY8523235.1"
                     /translation="MNAAKNVMSSNYKNMELDEYLKETLRETGYGGVDIQKTPIGTRI
                     TLYVTRPGLVIGRKGSGIKDLTSKLEQKFGLNNPQISVMEIEVPELNPQIMANRIAQL
                     VERGTAFRRASMWTINTVMGAGAMGVEITIAGKLRSERAHFEKHSSGVIPKSGNAADK
                     IVKLGITDVLTKM"
     gene            complement(517..993)
                     /locus_tag="VIL14_05695"
     CDS             complement(517..993)
                     /locus_tag="VIL14_05695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HEY8523236.1"
                     /translation="MPNYSYAYQNFDKSRQVRSALREKDISHKHAREIALAITNLSIE
                     KARDYLESVLRKEIAVPFRRYNNEVAHRSNIRDGFSAGRFPSKATHEFLKLLDNLESN
                     AEYKGMDLDRLKIINIVVHKGTRLKRFTPRAMGRASPKFDTLVHVEMVAQEGVVTE"
     gene            complement(1001..1408)
                     /locus_tag="VIL14_05700"
     CDS             complement(1001..1408)
                     /locus_tag="VIL14_05700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HEY8523237.1"
                     /translation="MVREFKFRGYNQDQLKSISIESLLPLLNARQRRSLNKRVGKYMN
                     DQKRTLREEIKLARDGKLKNKLKTHVRDMIILPDMIGLSISVHNGKEFFDVTIKSEMV
                     GHYLGEYAITNKRVQHGSPGVGSSRSSLYVPLK"
BASE COUNT          443 a          335 c          239 g          615 t
ORIGIN      
        1 ccatttttgt taatacgtca gtgataccca atttgactat tttatcagct gcatttccgc
       61 tcttgggtat aacacctgat gagtgttttt caaaatgtgc tctttcactt cgtaactttc
      121 cagctatagt tatctctaca cccatagctc cagctcccat tactgtatta attgtccaca
      181 tagaggctct tctaaatgca gtacctctct ccacaagctg ggctattcta ttggccataa
      241 tttgggggtt taactctgga acttctattt ccatgacgga aatttgagga ttattcaacc
      301 caaatttttg ctctagttta gaggtaagat cttttattcc tgagcctttt cgtcctatca
      361 ctaatccagg acgggttacg tataatgtta ttcttgttcc aataggagtc ttttgaatat
      421 ccactcctcc atagcctgtt tctcgaagag tttcttttag atattcgtct agctccatat
      481 tcttatagtt actagacatt acgtttttgg ctgcattcat tctgttacta cgccttcttg
      541 tgcgaccatt tcaacatgta caagtgtatc aaatttggga cttgctcgac ccatagcacg
      601 tggtgtaaat ctttttaatc gtgtcccttt atgaacaaca atattaatga tttttaacct
      661 atccaggtcc atgcctttgt attctgcatt actttctaga ttatctaaaa gtttcaaaaa
      721 ttcatgagtt gcctttgatg gaaagcgacc agcgctgaat ccatctcgaa tatttgacct
      781 gtgagcaacc tcgttattgt atcgtcgaaa tggtaccgct atttccttac gtaatactga
      841 ttctagataa tctctagctt tttcaatcga aagatttgta attgctaatg caatctcacg
      901 tgcatgttta tgagaaatat ccttttcgcg aagagcagac cttacttgtc tacttttatc
      961 aaaattttga tatgcataag aatagtttgg cataaatcac tcactttaaa ggaacataca
     1021 aactagatct tgatgaaccc acaccaggtg agccatgttg aactctctta tttgtaatag
     1081 catattctcc taaataatgt cctaccattt ctgatttaat tgtaacatca aaaaattctt
     1141 taccattatg tacactaata gatagaccta tcatatcagg taatattatc atatccctaa
     1201 catgagtttt caacttattc tttaactttc catcacgtgc caatttaatc tcttctcgca
     1261 aggttcgttt ttgatcattc atatactttc ctaccctttt gttcaaggat ctgcgttgtc
     1321 ttgcatttaa taatggtaag agtgactcta ttgatatgga ttttaattga tcttgattgt
     1381 aacctctaaa cttaaattcc ctaaccaatc tgatattata cctctagtgg cttattttta
     1441 aatctaccga gaaaataaaa aatatatctt ttcatattct taaaccaatc cgagctttgt
     1501 tgccaggtct cgagcagaat ctaaatcctt gaacttggca aaggcttttt ttccatctat
     1561 ggttcttgct gtgttaactt caattatttc agcttcatat agatcatgta attcctgttt
     1621 tattgatttt tt
//
LOCUS       DATCMF010000447         1605 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_391015, whole genome shotgun sequence.
ACCESSION   DATCMF010000447 DATCMF010000000
VERSION     DATCMF010000447.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1605)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1605)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1605
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_391015"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1124
                     /locus_tag="VIL14_05705"
     CDS             <1..1124
                     /locus_tag="VIL14_05705"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEY8523238.1"
                     /translation="VGLAAVPVAFSILRDVFPVEKLSIAIGVFSSAYSAGSVLGLLFG
                     ASIIQSFGWHATFFLISPVAAIVTTIIATFVPSRKSPQQSVKSIDTIDKEQKNNKVDI
                     KGGIFLSITITTFLIGLTLLETGGISNSALVLSSFGISSLSLGIFIAIEKKTNFPLID
                     LTMIKHKIILPSYILLILTGITMFLIYPTIVQLVRTPQPIGFGGDAIAAGNVQLPFMI
                     TFLVFATISSFIINRFGNVKPAIIGGIFVIIGTSSLFIFHSTEIEVSANLALMAVGLS
                     LTNIVGWNILVSSSPKEYTGISVGVGALLFFLGMAIGPALSGIYIQMNQSIIEGIDGL
                     FPSKESFNMIFLTAGILSIGLMVNLFILKKRMTYKKVNY"
BASE COUNT          548 a          212 c          254 g          591 t
ORIGIN      
        1 gtgttgggtt agcagctgtt cctgtagcat tcagtatctt acgagatgtc tttcctgtag
       61 aaaaactttc aattgcaata ggagtattta gttcagcata ttcagctggt tcagtcttag
      121 gtttattatt tggtgctagc attatacaat cttttggttg gcatgctaca ttctttttga
      181 tatcacctgt agcagcaata gtaacaacaa taatagcaac gtttgttcct tcaagaaaat
      241 caccacaaca atcagtaaaa agtattgata ctatagataa agaacagaaa aataacaaag
      301 tagacataaa aggaggcata tttctttcta taacgattac aacattcttg ataggattga
      361 ctttattgga aacaggaggt atctcaaatt ctgcattagt tctatcatcg tttggtatat
      421 cctctttatc tttgggaata tttattgcaa tagagaaaaa gacaaatttt ccgttaattg
      481 atttgacaat gattaaacat aaaataattc ttccttccta tattctattg attcttacag
      541 gaattacaat gtttttgata tatccaacaa tagtacaatt agtaagaaca cctcaaccaa
      601 tagggtttgg cggtgatgcc atagctgcag gaaatgtaca attgccgttt atgataacct
      661 tcttagtatt tgctacaata agctcattta ttatcaatag atttggaaat gtaaaacctg
      721 caatcatagg aggcattttt gtgataatcg gcacatctag tctatttatt tttcattcta
      781 cagaaataga agtgtctgct aatctggcac taatggctgt aggtttatca ttaactaata
      841 ttgttggatg gaatattttg gtatcttctt caccaaaaga atatacaggt atatcagtag
      901 gagtaggagc tttattattt ttcttaggta tggcaatcgg ccccgcatta tctggaatct
      961 atattcaaat gaatcaatct attatagaag gtattgatgg tttatttcca tcaaaggagt
     1021 catttaatat gatatttttg actgctggaa tattatcgat aggattaatg gttaatttat
     1081 tcatattaaa gaagagaatg acttataaaa aagttaatta ttaattgaat ggaaaaagaa
     1141 aattaaaaat aacaaattca tttttttaaa aatgttcaaa atctctttat cttatttgtt
     1201 taaggcatac aattttaaat aaaagtagaa atgaggttat tctagtctga tatctaatag
     1261 gatgatataa taaagtttta attttaatgt ataattgaaa taatatctat ctacttaatt
     1321 taaagagatt atactaattt gaaatataac taatagcaaa cttcgatagt aattgttata
     1381 aaaatgatac atttttacat ttataaaaag tattagaggt atgagatcat gctatcctta
     1441 actttccaag acttctgaaa aagttcttga aaattttctt tttgctattt gaagggcttt
     1501 ttttcctttt ggtgtaagat tatatattat agttttacct tctttttgtt catctagaaa
     1561 accagaatgt ttgagacctc caagggctgg ataaattgtt cctgg
//
LOCUS       DATCMF010000448         1750 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_528757, whole genome shotgun sequence.
ACCESSION   DATCMF010000448 DATCMF010000000
VERSION     DATCMF010000448.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1750)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1750)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1750
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_528757"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..192
                     /locus_tag="VIL14_05710"
     CDS             <1..192
                     /locus_tag="VIL14_05710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523239.1"
                     /translation="EEEKEEEEYFEDVSLEELFDDNNDDNNREGKDNNVREEEKEEDE
                     KEEENEVPFILPFNAVPFP"
     gene            292..409
                     /locus_tag="VIL14_05715"
     tRNA            join(292..317,334..347,365..409)
                     /locus_tag="VIL14_05715"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:344..346,aa:Leu,seq:taa)
     gene            complement(421..1047)
                     /gene="pdxT"
                     /locus_tag="VIL14_05720"
     CDS             complement(421..1047)
                     /gene="pdxT"
                     /locus_tag="VIL14_05720"
                     /EC_number="3.5.1.2"
                     /EC_number="4.3.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA];
                     GO_process: GO:0042823 - pyridoxal phosphate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal 5'-phosphate synthase glutaminase
                     subunit PdxT"
                     /protein_id="HEY8523240.1"
                     /translation="MSNIKVGVLGIQGDIEENILSTEEALKKLNLRGTVESVRYSESV
                     AELDGLILPGGESTVIGSLLSIQGKVFQTIEKKIKEGMPVLGTCAGLIMLSKRTYDKV
                     VGETKQKLFGILDVVIERNAFGRQHESFEVDLEIPVLGKEPFRGIFIRSPIVNNVGES
                     VTILTKLNDKIVAVKQNNIIGTSFHPELSADIRLHELFIKDILEFRKD"
     gene            complement(1044..>1750)
                     /locus_tag="VIL14_05725"
     CDS             complement(1044..>1750)
                     /locus_tag="VIL14_05725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="pyridoxal 5'-phosphate synthase lyase subunit
                     PdxS"
                     /protein_id="HEY8523241.1"
                     /translation="IEEIMDEITIPLMAKCRIGHISEAKILEVIGVDMIDESEVLTPA
                     DEENHIWKWDYTTPFVNGAKNLGEALRRIEEGSSMIRTKGEPGTGNIAEAVRHIKQVN
                     NDIRKLRSFYFDKDEQELIKFSRELKISYSLIKETAKLARLPVVNFAAGGISTPADAA
                     LVMNLGCDGVFVGSGIFKAEDPEQRAKSIVLATTYYDDPTIVMEAQKLVDEKKSLLGL
                     DTKSLELRMQERGPMI"
BASE COUNT          550 a          323 c          269 g          608 t
ORIGIN      
        1 gaggaagaaa aggaagagga agagtatttt gaagatgttt cgctagaaga actgtttgac
       61 gataataatg atgataataa tagagaaggt aaggataata atgtaagaga ggaagaaaag
      121 gaagaagacg aaaaggaaga ggagaacgaa gtgccattta tacttccatt taatgcagta
      181 ccatttccat aattgttgtc aaattgaatt agctattata agatgcaaag aagttatgta
      241 taaaatcact ttgtaaagtt taatatcagg gtcattagtc ttgcattatg ggcgggggtc
      301 gtagagcccg gccaaataac aaaaaatttg gagacgcggg acttaagatc tataaaaatg
      361 ggtgatcccg tcctttagag gttcgtgggt tcaaatccca ccccccgcat gttagataaa
      421 ttaatctttt ctaaattcta aaatatcttt tataaataat tcatgtaatc ttatatctgc
      481 tgaaagttca ggatgaaatg aagttccaat aatgttattt tgttttacag ctacaatttt
      541 atcattgagt ttagttagga tagttacact ctcgccaaca ttatttacta taggcgatct
      601 tatgaaaatt cctctaaaag gttccttacc taaaactgga atttcaagat ctacttcgaa
      661 agattcatgt tgtcttccga atgcatttct ttcaattaca acatctaata ttccaaataa
      721 tttttgtttt gtctctccaa caactttatc atatgttcgt tttgataaca tgatcaaacc
      781 agcacacgta cctaatacag gcataccttc tttgattttc ttctctatag tttgaaagac
      841 tttaccttga atagagagta aacttccaat tacagtactt tcaccacctg gtaatattaa
      901 accatctaat tctgctacgg attcagaata gcgaaccgac tctacggttc ctcgtaagtt
      961 tagcttcttt aatgcttcct ctgttgataa aatattttct tctatatccc cttggattcc
     1021 tagtactcct accttaatat tgctcaaatc ataggacctc tttcttgcat acgtaattca
     1081 agacttttag tatctagacc taataatgat tttttctcat ctactaattt ttgagcttcc
     1141 ataactatcg taggatcatc ataatatgtt gtagctaaca ctattgattt agctctttgt
     1201 tctggatctt cagctttaaa aatacctgag ccaacgaaaa caccatcaca tcctaaattc
     1261 ataactaatg ctgcatcagc aggtgttgat atcccacctg cagcaaaatt tactactggt
     1321 aatcgagcta atttagcagt ttccttaatt aatgaataag aaattttgag ttcacgagaa
     1381 aatttaatta attcttgttc gtccttgtca aaataaaaag atcgaagttt tctgatatca
     1441 ttattcactt gtttaatatg tcgtacagct tctgcaatat ttccagttcc tggctcacct
     1501 ttagttctaa tcatagaact tccttcttct attcgtcgta gtgcctcacc gagattcttt
     1561 gcaccgttaa caaaaggagt agtatagtcc catttccata tatggttctc ctcatctgca
     1621 ggtgtaagga cttcactttc atcaatcata tcaacaccta ttacttcaag tatttttgct
     1681 tctgatatat gcccaattct acattttgcc ataagtggta ttgtaatttc atccattatt
     1741 tcttcaataa
//
LOCUS       DATCMF010000449         1670 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_588413, whole genome shotgun sequence.
ACCESSION   DATCMF010000449 DATCMF010000000
VERSION     DATCMF010000449.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1670)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1670)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1670
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_588413"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(350..1483)
                     /locus_tag="VIL14_05730"
     CDS             complement(350..1483)
                     /locus_tag="VIL14_05730"
                     /inference="COORDINATES: protein motif:HMM:NF028479.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-bladed beta-propeller"
                     /protein_id="HEY8523242.1"
                     /translation="MIFLSFITINFIPSIYAQEFEFNAEDYFYSEQNPTNSKDVTTAP
                     DSEDTDKEDCLDNPMDSLSLPNSDMNSDSYTSEFHFIKKFDRDGNLIGSWGTVGSNDG
                     QFLHAHGITIDSQDNVYVSDAENCNIQKFDKDGDFITKWGTKGTGPGKFLQPESMAVD
                     SLNNIYVAEYSGKNIQKFDSDGKFLKMWGKEGEKIGEFKKPWGVALDSKDNVYVSDQA
                     LPRVQKFDSDGNFITMWGKEGSKKGQFVHQHDITVDSNDYVYVTDGRQNSRVAVFDSD
                     GKFLKMWGSEGSKKGQFIEDHGIVVDSEGNIYVVDTRNVRVQKFDSDGNFITMWGSLG
                     CKDDQFLIPHDIAMDSEGYIYVTDSGKSHFRANYDCNQGNNKL"
BASE COUNT          573 a          300 c          204 g          593 t
ORIGIN      
        1 aaaaaactgc attctcacaa atgaaataaa aatagctatc taggattaaa acaggtatta
       61 ctactatgta aataagttca ggaagtaaag aaaaagaatc tcttaaaact ctcaattatg
      121 ttatgtcctt actagagcat tcaaggtttt tgaatacaaa tagaggaagt agatacgtat
      181 ttttaagaca ttattattta tctataaagg aacaaatgac ttacatgtag atttgataac
      241 aaagatcgag ataaaatcat ccataaaata taatactact gtatcaaaca taagtagagg
      301 tcaatgagtt taattaattt aataattata ttttctctat tattaataat tataatttat
      361 tattaccttg attacaatca taatttgctc taaagtgtga ctttccacta tcggtaacat
      421 aaatatagcc ttctgagtcc attgctatat catgtggaat taggaattga tcatctttac
      481 acccaagtga tccccacatt gtaataaagt taccatcgct atcaaatttt tggactctta
      541 cgttccttgt atctactaca tagatattac cctcagaatc aacaactata ccatggtcct
      601 cgataaattg gcctttcttt gagccttcac ttccccacat tttcaagaat tttccatcac
      661 tatcaaatac cgcgactcta gaattttgtc taccatctgt gacatagaca taatcatttg
      721 agtctactgt tatatcatgt tggtgtacaa attggccttt ctttgagcct tctttacccc
      781 acattgttat aaagttacca tcactgtcaa atttttggac tctaggaagt gcttgatcac
      841 taacataaac attatctttt gaatccaaag ccactcccca tggttttttg aattcaccta
      901 tcttttcacc ctctttaccc cacattttca agaattttcc atcactatca aatttttgaa
      961 tatttttccc agaatattcg gcaacataaa tattatttaa agaatctaca gccatactct
     1021 caggttgcaa aaatttacca ggacctgttc cttttgtacc ccattttgta ataaaatctc
     1081 catccttatc aaatttctga atattacaat tctctgcatc actcacgtac acattatctt
     1141 gagaatcaat agttattcca tgagcatgaa gaaactgtcc atcattagat cctaccgtac
     1201 cccaactccc tataagattt ccatccctgt caaatttttt tataaagtga aattctgatg
     1261 tataagaatc tgaattcata tcactatttg gtaacgaaag agagtccatt ggattatcta
     1321 gacagtcttc tttatctgta tcttccgaat cgggtgcagt agttacatct tttgaatttg
     1381 taggattttg ttctgagtaa aaatagtctt ccgcattaaa ttcaaattcc tgtgcataaa
     1441 tagatggtat aaaatttata gtaatgaaac ttaaaaaaat caaactaaat tgtatagata
     1501 gtaatttggt aattatgttc acaatcttta ataatgctat atctaatatt aatattgtat
     1561 tggaaaatta tagctaattt ctctagtaca acgttagaac aaatatcaat catagtagaa
     1621 attaacatat gcatattaag aatagattat tatatatgat ctattctcag
//
LOCUS       DATCMF010000450         2133 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_529747, whole genome shotgun sequence.
ACCESSION   DATCMF010000450 DATCMF010000000
VERSION     DATCMF010000450.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2133)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2133)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2133
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_529747"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            103..1128
                     /locus_tag="VIL14_05735"
     CDS             103..1128
                     /locus_tag="VIL14_05735"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEY8523243.1"
                     /translation="MKYILKNLIVILFILFGIFSLSSILPSMGYAQDSSITNTANTHD
                     SFNIAVASDWGCKGDAEQTANNIQSHDPDLVIAGGDLSYKGSAACWMDIIAPFKDKTT
                     ISMGDHDYDDTTGGKTGAIKDYLKPLGITNTYYSFNLHNVHFVAIDPYVAYGPNSPQY
                     RFVINDLSNAYNDPNIDWIFVIEHIPLYTSPSKHPADSTIRDVFHPLFDKYNVDLVFS
                     GDNHNYQRTYPLIYNPSDSSAPIISKKDHSNYKDDKDGVIYLISGAAGRSHYDITQQA
                     PFVAKQDDTQFGFLNIDIKSDKALVGTFYANERNPNYNPISDTNQRGNIVDQFTISKL
                     TTVGSRS"
     gene            complement(1596..1910)
                     /locus_tag="VIL14_05740"
     CDS             complement(1596..1910)
                     /locus_tag="VIL14_05740"
                     /inference="COORDINATES: protein motif:HMM:NF022829.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2795 domain-containing protein"
                     /protein_id="HEY8523244.1"
                     /translation="MSSNKGEKSNQIPGSQDSGETAGVISEQGGIPGQRKEVNVENYE
                     RVASIGQVLKDLEFPANKEKIVEFVKNNATDKELLQKIEKLPDKEYKNVSEVTHDAGL
                     VY"
BASE COUNT          753 a          316 c          313 g          751 t
ORIGIN      
        1 atgaaattga caataaaaag ccgaatgatt ctattattaa taattacttt agttccaaaa
       61 taatggttga aaattagaga aattctagag gaaaagaggg tagtgaaata catattgaaa
      121 aatctaatag tgatactatt cattttattc ggtatcttta gtttatcatc cattctccct
      181 agtatgggtt atgctcaaga ttcatctatt acaaatactg ctaacacgca cgacagtttt
      241 aatattgcag tagcgtcaga ttggggatgt aaaggagatg cagagcaaac tgcgaataac
      301 atccaatctc atgaccctga tcttgtaatt gcaggcggtg atctaagcta taagggatct
      361 gccgcatgtt ggatggatat tattgcaccg ttcaaagata aaacaacaat atcaatgggg
      421 gaccatgact atgatgatac tactggtgga aaaacagggg cgattaaaga ttatctgaaa
      481 ccattaggga ttacaaatac gtattattct tttaacttac ataatgttca tttcgttgct
      541 attgatccgt atgttgcata tggccctaat tctcctcagt atagatttgt cataaatgat
      601 ctatcaaatg cttataatga cccgaacatt gattggatat ttgttataga acatatccca
      661 ctttatactt ctccatccaa acatcctgct gattccacaa ttagagatgt cttccatcct
      721 ttatttgaca aatataatgt cgatttagta tttagcggag ataatcacaa ttatcaaagg
      781 acatatccac tcatctataa tccttcggat agttccgctc ctatcatatc aaaaaaagat
      841 catagtaatt ataaagatga caaagatgga gttatttatc taataagtgg agctgctggc
      901 agatcacatt atgatattac acaacaagct ccatttgttg caaaacaaga tgatactcag
      961 tttggatttt tgaatattga tatcaagagt gataaggcat tggtggggac gttttatgca
     1021 aatgagagaa acccaaatta taatcctata tcagatacaa atcaaagagg taacatagta
     1081 gaccaattta caatttcaaa acttacaacc gtggggtcac gcagttaagt taagcaatct
     1141 aatattatat aatcttattt agcatatcaa actcaagact taattagatt gattgtctta
     1201 gacaccaaat tatatatttt atttttattg tggacaatta tagtacaatt tttcttcgat
     1261 ctaattaaaa cttcaattaa ccattgtatt ctaaatatga gggtgataac ttttctagaa
     1321 tttcaaaata tgcaaaagta ttattagaat tacaagaata atttatttat catttgatgg
     1381 cataaataac taattccata aattatgtat tatttaaagc tttaataata aactattact
     1441 caaataagtc tcatatatta gaaactaatt ataattagta tggattttat ttatagattt
     1501 ataataattt caaactttct ttttgaaata aaaagttggc gaaataatat taaaaaatat
     1561 agtatataaa ctaaaataaa attaaatact actatttagt agactagacc tgcgtcatgt
     1621 gtaacttcgg aaacattttt gtattcctta tccggtagtt tttctatttt ttgtagtaat
     1681 tctttatctg tagcattatt ttttacaaat tctactattt tttctttatt tgctggaaat
     1741 tcaagatcct taagtacttg acctattgat gcaacccgtt catagttttc aacatttact
     1801 tcttttcttt gaccgggaat accaccctgt tcacttatta ctccagctgt ttctccagag
     1861 tcttgtgatc ctgggatttg gtttgatttt tctcctttat ttgaactcat atgatcgtat
     1921 gtacatcaaa atatttattg attgagtaaa tgaatgaatg aacgtatcgg tttatagtat
     1981 atgtgataaa ttcgtaataa tattagtaaa atcttaatta gattagtaac caaatccaat
     2041 acatctgtaa aaatgaagaa ggtatctata ttagcaattt tgtaaaatgt taagaacagt
     2101 cctaaaacag agctctaaaa caaataataa taa
//
LOCUS       DATCMF010000451         1844 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_529822, whole genome shotgun sequence.
ACCESSION   DATCMF010000451 DATCMF010000000
VERSION     DATCMF010000451.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1844)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1844)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1844
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_529822"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            282..779
                     /locus_tag="VIL14_05745"
     CDS             282..779
                     /locus_tag="VIL14_05745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523245.1"
                     /translation="MGTVTAAVLLSSAIFFLKNSQVAGQIGEESETKIKKQDIFKIIL
                     TVNGLGKESGDVIAFVTVNGQSKVKLFDDEKSYLNSRSSNSGGQGFIEYVSTFPNMTI
                     KTGEQYKACALLIRDSNLICQTGNNSPALRPEIVDLYINQGDEATTTINQALSIIEEK
                     NEDDE"
     gene            complement(895..1104)
                     /locus_tag="VIL14_05750"
     CDS             complement(895..1104)
                     /locus_tag="VIL14_05750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523246.1"
                     /translation="MIEYEFLDENLYFDRYGGVQTEWEGTKSIIYGIRKEWNDPRFRE
                     NFELLARKGSKWLESHSPKVGDQRE"
     gene            1497..>1844
                     /locus_tag="VIL14_05755"
     CDS             1497..>1844
                     /locus_tag="VIL14_05755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523247.1"
                     /translation="MFQTLKEFFENLHKEGTGLLNYNENKVPCIYVDSNKYEDIIIST
                     SGKKMAVDTLLNIFHDGTHVFVDIQMKFLDSDREEYFLVFANDMLEFFEALSKTGLIA
                     IVPQREYYGNQNIF"
BASE COUNT          587 a          340 c          311 g          606 t
ORIGIN      
        1 ttattatcaa gattccatga acctatatta tatccatagc gttctgtagc agtattttgc
       61 atcccgcata gtgtccgttg ctgcattttc tttaatcttt ggttatttct atccggtcct
      121 tgggtcttaa taccccacca ctgagctgtt ttctagaaag gtctaaatta attaactaaa
      181 acataaggaa ctcttagcct ttaggtcata aatattagga gatctaatgt gagtttgtcc
      241 cccctttgtc tatgtacact ctttctctcc tattgctaat cttggggact gtcactgcag
      301 ccgtattgtt gtcttctgca attttctttc taaagaatag tcaagtggca ggacaaatcg
      361 gtgaagaatc agaaacaaaa atcaaaaaac aagatatctt caagataatt cttacggtaa
      421 acggactagg aaaggaaagc ggagatgtca tcgcatttgt gactgtaaat ggtcagtcaa
      481 aggtaaagtt atttgatgat gaaaagtcat acctaaattc tagaagtagc aatagtggag
      541 ggcagggttt tatagaatac gtatcaacat ttccaaatat gaccatcaaa actggtgaac
      601 aatacaaggc ctgtgcattg cttataagag attcaaatct aatatgtcaa acaggtaata
      661 attctccagc tcttagacct gaaattgtag atttgtacat aaaccaagga gatgaagcga
      721 caacaacaat caaccaggcg ctttcaatta tagaagaaaa gaatgaagat gacgaataac
      781 aaataaccgc aattaacaac aagatatctc tacttaagta taatcttaca atttttacaa
      841 ctgcatattg ccacgagctt ttgtctttgc ttattatatg attttagatc agttctattc
      901 tctctgatcc ccgactttag gggagtgact ttctaaccat ttacttcctt ttcttgcaag
      961 taattcgaaa ttctctctaa acctaggatc gttccattct tttcttatgc catatatgat
     1021 tgactttgta ccttcccatt ctgtttgtac tcctccatat ctgtcaaagt acagattttc
     1081 gtcaagaaat tcatattcta tcaatatatc tgctagttca aattttgatg tatatctttc
     1141 aaagagttcg gcttcctgct tccccgagga tacttgtgtc taaattcttc aaatgatgct
     1201 acctctctaa tattcccccc aaaaccattc tgctgcttca aaatcataac agtattgtat
     1261 aagtcagcta gatctaacag aatatcaata tcatcctcag ttacggtttt tatattgcgt
     1321 cgactagaca gactgtagtt tttgtctggc tttagccatg actacatgtg tctcttaata
     1381 aacaatccat tttcgtatgt ttttagggtt aaaggaatat cgttgggtgc tgagggaact
     1441 agagcaacca ataataccat caaaagctta ctctataact agtgcaaggt aaaagaatgt
     1501 tccaaacact gaaggaattc tttgaaaatc tacacaagga agggaccggt ttattaaatt
     1561 ataacgagaa taaggtgcca tgcatatatg tagattcaaa taagtatgag gacataatta
     1621 tcagcacatc tggtaaaaaa atggccgtcg atactttact caatattttt catgatggaa
     1681 ctcatgtttt cgtcgatatt cagatgaagt ttctagattc agacagggag gaatattttc
     1741 tagtgtttgc aaatgacatg ctagaatttt ttgaagcttt atcaaaaact ggacttatag
     1801 caattgttcc tcagagagaa tattatggaa atcagaacat cttc
//
LOCUS       DATCMF010000452         1544 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_529887, whole genome shotgun sequence.
ACCESSION   DATCMF010000452 DATCMF010000000
VERSION     DATCMF010000452.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1544)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1544)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1544
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_529887"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(194..1456)
                     /gene="truD"
                     /locus_tag="VIL14_05760"
     CDS             complement(194..1456)
                     /gene="truD"
                     /locus_tag="VIL14_05760"
                     /EC_number="5.4.99.27"
                     /inference="COORDINATES: protein motif:HMM:NF013322.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(13) synthase TruD"
                     /protein_id="HEY8523248.1"
                     /translation="MIKTVPEIDFQAGMECYCTNFAGIKGTIKETNEEFQVSEIIDYT
                     FLKPPYFSSVQNNEHKFPLYLLEKHNIDSNHAVIEIKKQSGLKLRIMGIKDAKAETSQ
                     YASCEQTKNLPRDIITPKTKLTLLGFLRTPLSKSALIGNSFKIKINQTSDNDIHPFLL
                     ELNKIANFYGLQRFGSERMVTHLVGKALLERNYNKAIEYLLSYTSKYDSKFSKEIREK
                     SRDPKNYQKLIKILPKGMDLERLMLYTLVKGKDSIAVIRSIPINIRRLFVQAYQSYIF
                     NKCLSSALLCNEDIQKCKDGDLCFEIEKPLVFGKIRRFREGIDSNNDVTPAIRLVGYN
                     YQPGKNRFDHITKRILTDENISPTAFYLKDLQELSLQMGFRQTSLCCNEFSHFGMLEL
                     SFKLPKGSYATTLLRELIKPIDPIKAGF"
BASE COUNT          518 a          239 c          196 g          591 t
ORIGIN      
        1 ctattagaat tagacagcat acgtttcttt aattcttcaa tactagaatg aatattctca
       61 acattagttt caaattctga aagactattg attattcctt ccaccgtgga aacattggat
      121 tccaatccgt taaaattgca ctttaaaggg atattaacca ttccttttaa ttagtaaaaa
      181 ttatatcaag ctttcaaaac cctgctttaa taggatctat gggttttatt aattcacgta
      241 acaaagttgt ggcataagat ccttttggta atttaaatga cagctcaagc ataccgaaat
      301 ggctaaattc attacaacat agcgatgtct gtctgaatcc catctgtaag cttaattctt
      361 gcaaatcttt taaataaaaa gcagttggcg aaatattttc atctgttaaa attcttttag
      421 taatatgatc aaaacgattt tttcctggtt gataattata acctactaat ctaattgctg
      481 gagtaacatc attatttgaa tctattcctt ctctaaacct tctaatttta ccaaaaacta
      541 gaggtttctc tatctcaaaa cataaatctc catctttaca tttttggata tcttcattgc
      601 acaaaagagc actactgaga catttattaa aaatataaga ttggtaagct tgaacaaaga
      661 gtcttctaat atttataggt atagatcgta taactgcaat ggaatcttta cctttcacaa
      721 gtgtatataa catgagtctt tctaaatcca ttcctttagg caagatttta atcagttttt
      781 gataattctt aggatcccta cttttttctc ttatttcctt tgagaacttg gaatcatatt
      841 tggaagtata agagagaaga tattcaatag ctttattata atttctctca agtaatgctt
      901 taccaactaa atgagttacc attctttcac ttccaaatct ttgtaagcca tagaaattag
      961 caattttatt taattctaat aaaaaggggt gtatatcatt atcagaagtt tgatttattt
     1021 ttattttgaa gctatttcca ataagtgcag attttgataa tggagtacgt aggaaaccta
     1081 ataaggttaa ttttgtttta ggtgttatta tatctctagg taaattcttt gtttgttcac
     1141 aactagcata ttgactagtt tctgcttttg catcctttat ccccattatt cttagtttta
     1201 aacctgattg ttttttaatt tcaattaccg cgtgattaga atcaatatta tgtttttcca
     1261 ataaataaag gggaaattta tgttcgttat tttgaaccga agagaaatat ggtggtttta
     1321 aaaatgtata atctattatt tcagatacct gaaattcttc attagtttcc tttattgttc
     1381 ctttaatacc tgcgaaattt gtacaataac attccatacc agcttggaaa tctatctcag
     1441 gtacagtttt tatcacaaaa ttaacctata tcaaattaaa tataaacaat ataacaatta
     1501 tatcaatcaa caataaataa aggatttata ttcaaatagc atat
//
LOCUS       DATCMF010000453         1911 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_457268, whole genome shotgun sequence.
ACCESSION   DATCMF010000453 DATCMF010000000
VERSION     DATCMF010000453.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1911)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1911)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1911
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_457268"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..717)
                     /locus_tag="VIL14_05765"
     CDS             complement(<1..717)
                     /locus_tag="VIL14_05765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523249.1"
                     /translation="MKIFTNKSRDYIYFPFTKEPDKTSNKKFEELGEHNISNDMFDDD
                     LLKSLGREILKEKTPSLQELEQTLQEIIKQKEKKNKFKKENDFKDKNELNASSDSNIK
                     ANLPIITHLIRKGYLKNSEKWLSSKGFVNIGEKILQDILKELKKGDFGIHETKNFGYG
                     SLLLDTTKKYEIGDDIRLINIPNSLLNSIQRLARENGKVEIPLKLDIDDFEEYETIQD
                     VRISIVYCIDLSSTMRYSTLY"
     gene            complement(701..>1911)
                     /locus_tag="VIL14_05770"
     CDS             complement(701..>1911)
                     /locus_tag="VIL14_05770"
                     /inference="COORDINATES: protein motif:HMM:NF019348.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEY8523250.1"
                     /translation="PRFTVSKETEDTIRNNGLDTKIDWISGSERYRYILATPDISVKD
                     LVGQIDAIKIAKKGVEIYNIESYSPGQLLQARHGILCIDELPVLDPRKQVSLLSVLQE
                     GRFTTGSYPVYFEPDLKIIATSNPIDYTHSGKIIEPLFDRLRSHIETRYPVKLIDEML
                     IIIQEIKLSDPKNVILPIFVLKTLATITQLARTNSEINQDKGVSVRMSVHSTEAIISE
                     AERVRSLIYNVKAVPRFSDINSIHQTSKFELSELDDNNQNRLDILNKLISEAIKTTAR
                     EYIQNIKSEDIVLVKNEFSENMKFIVSQNLLGDKTSNSQVNYENQLENFPTLLKIVDR
                     MIEIDENEKNSFIKNIEYNRIDLNGLSFSSKEDKEYRASIVELILEGLRNLDNPIIDR
                     REKGIYENIH"
BASE COUNT          566 a          312 c          237 g          796 t
ORIGIN      
        1 atacaaagtt gaatatctca ttgtggaact gagatctata caatatacta tcgaaattct
       61 aacatcttgg atagtttcat attcttcaaa atcatcaata tctaatttta acggtatttc
      121 gactttacca ttttctcttg cgagcctttg aattgaattt aataatgaat ttggaatatt
      181 aattaatcta atatcatcac caatttcgta tttttttgtt gtatctaata aaagagatcc
      241 atatccaaag tttttggttt catgtattcc gaaatctcct ttttttagtt ccttcaaaat
      301 atcttgtagt attttttcac caatattcac aaatccttta ctgcttaacc atttttcaga
      361 attttttaaa taaccttttc ttataaggtg agtaataatg ggtaaattcg cttttatgtt
      421 gctgtcagag gatgcattta actcattttt atccttaaaa tcgttttctt ttttaaattt
      481 gttcttcttt tctttttgtt taataatctc ttgtaaagtt tgttctaatt cctgcaaaga
      541 aggtgttttc tctttaagaa tttctcttcc aagagatttt agtaagtcat cgtcgaacat
      601 atcattactt atgttatgtt ctcccagctc ttcaaacttt ttatttgaag ttttatctgg
      661 ctcttttgta aaaggaaaat aaatataatc tcttgattta ttagtgaata ttttcatata
      721 ttcccttttc tcttctatca ataattgggt tatctaaatt tcttaaccct tcaagtatta
      781 actctactat cgatgctcta tattctttat cttctttact agaaaacgat aatccattaa
      841 gatcaattct gttatattcg atatttttga taaaactatt tttttcattt tcgtctattt
      901 ctatcatcct gtcaactatt tttaaaagag tcggaaaatt ttccaattga ttttcgtaat
      961 taacttgaga attgctagtc ttatctccta aaagattttg tgatactata aatttcatat
     1021 tctcactaaa ttcatttttt actagcacaa tatcttcgct ctttatgttt tgtatatact
     1081 ctctcgcagt agtctttatt gcttctgaaa ttaatttatt taaaatatct agtctatttt
     1141 gattattatc atctaattcg gataattcaa atttcgaggt ttgatgtata ctattaatat
     1201 ctgaaaatct aggtactgcc tttacgttat aaattaaaga tcttactctc tcagcctcac
     1261 taattatagc ttcagtagaa tgcactgaca ttcttacact tacccctttg tcttggttaa
     1321 tttctgaatt tgttctagct aattgtgtga tcgtggcaag ggttttcaag acgaagatag
     1381 gtaaaataac attttttgga tcacttagtt ttatttcctg aattattata agcatttcat
     1441 caattagttt tacaggataa cgtgtctcaa tatgacttcg aagtctatca aacaaaggtt
     1501 ctattatttt tccagaatga gtataatcaa tcggatttga ggtagctatt attttgagat
     1561 caggctcaaa gtaaacagga tatgaacctg tagtaaatct accttcctgc aatacgctta
     1621 ataaagaaac ttgttttcta ggatctaaaa caggtaattc atcaatacac aatattccat
     1681 gtctggcttg taatagctga cctggtgagt atgattcaat attataaatc tcaactccct
     1741 tttttgctat tttgatggca tcaatttgtc ctactaaatc tttaaccgaa atatcgggag
     1801 ttgctaaaat gtatctatat ctttcagatc cgctaatcca atctatttta gtatctaatc
     1861 cattattcct aatagtatct tctgtttctt ttgaaacagt gaacctggga g
//
LOCUS       DATCMF010000454         2796 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_393695, whole genome shotgun sequence.
ACCESSION   DATCMF010000454 DATCMF010000000
VERSION     DATCMF010000454.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2796)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2796)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2796
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_393695"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..287
                     /locus_tag="VIL14_05775"
     CDS             <1..287
                     /locus_tag="VIL14_05775"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF025054.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEY8523251.1"
                     /translation="VAIKDTDIVGSITAIIEQKFIHNGGKICHIEDVVTRKGFENLGI
                     GSTLVKKVIELAIQEKCYKVILNCSQYNLKFYEKLGFYNHDIGMRYNIDT"
     gene            924..1715
                     /gene="murI"
                     /locus_tag="VIL14_05780"
     CDS             924..1715
                     /gene="murI"
                     /locus_tag="VIL14_05780"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR00067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008881 - glutamate racemase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HEY8523252.1"
                     /translation="MNSYPIVVFDSGIGSISVIREIKRELPNENLIYFADKANFPYGK
                     KSQIDLFKIVHNTIKYLERFHPKLIIIASNTPSIQVIDKIRSLTNIPLMGVKPPIKKA
                     IKITKKNHIGIMATESSINSKELDELIKLEIPQDIFVSKYNASSLIPLIEDGTFLSNR
                     KKIEQFITQILGNVDNIDVITLSSTHLPFILDQLNQIYPHVKFLDPAESIVKDLKKFL
                     IDNKLNNKIKNGKMRILVSDNKKKFQEILRQIGRKEKIEEVFWSI"
     gene            1800..>2796
                     /locus_tag="VIL14_05785"
     CDS             1800..>2796
                     /locus_tag="VIL14_05785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydantoinase/oxoprolinase family protein"
                     /protein_id="HEY8523253.1"
                     /translation="MNRKIRVGIDVGGTFTKAIAIDITSGTFIGKTTVPTTHNSERGV
                     ADGIIIALRDLIKHFSIERSEIELISHSTTQAVNALLEGDTVKVGIIGMGVGLEKSNV
                     VKRTNIKNVELSLHKYLHTCYRFMDTSKYLDINEIIFTIASLKKEGADVLVVSEAYGV
                     DDPSNEKYVMNYSDIPITGGHELTGIYGLEIRTLTAAINAGIMPKAISTAKYVEEAVR
                     KENISCPIMIMKGDGGVTDIDTFKNKPILTILSGPAASVAGALLYSHILHGVFIEIGG
                     TSTNISIIKNGKPEIRYVSIMDHPTCIRSVDVRVAGVAGGSLIRISNQKIIDVGPR"
BASE COUNT         1088 a          351 c          460 g          897 t
ORIGIN      
        1 ttgttgccat aaaggacaca gatatagtcg gatcgattac agcaattata gaacagaaat
       61 ttattcataa tggtggaaaa atttgccata tagaagatgt agtaacacga aaaggatttg
      121 aaaatttagg aattggttcc acccttgtaa aaaaagtaat agaattagca attcaagaaa
      181 agtgttataa ggtaatttta aattgttcgc aatacaactt aaagttttat gaaaaattgg
      241 gattttacaa tcatgatatt ggtatgagat ataatattga cacttgacaa attaaagata
      301 ctattaatct tatattgtgt gggtacctct gactttcaaa gtaatatgtg agatgatatc
      361 attgtttttc gttatgcttt aaacatttca aaaaaaaaga ccgcaatagt agattttttg
      421 ttgttactaa aaatgagtct tcaagttaga ccaaaatttc tgtaatttta ttaacatgta
      481 tcgaaagtaa cacaatttgt taaaagtaaa taagttagtg attttacatt tatttatttc
      541 caaatcatta tttacctttg acgattcaaa taaattaaga atgatatata gatggttatt
      601 ttattgaaaa caacagcaaa cagattagta gtagagacga tttaactgta tgattaagtc
      661 acttttccat atcattcagg cagaatgaat aacttttaat aacttattta gagaaagata
      721 gtgaaaaaat atgaatactt aataatagta agaggaaata aatagtaaat aaaaaaacag
      781 aaggtaatca tcatcttgtt taataataat ttttaccttt taaactcttt ttatatacta
      841 taaaatttct tgatctaaaa ttcgttctat aagtaatgtt tcttggaaga attatattga
      901 atactttata tagatcaata ttaatgaatt cttatcccat agttgtattc gattcgggta
      961 ttggatcgat atcagtaatt cgggaaataa aaagagaact tcccaatgaa aatttaatct
     1021 attttgcaga taaagcaaat tttccctatg gaaaaaagtc acaaattgac ctttttaaaa
     1081 ttgtccataa tactattaaa tatttagaac gatttcatcc aaaattgata ataattgctt
     1141 cgaatacacc gtctatacaa gttattgata aaataagatc acttacaaat attcccttga
     1201 tgggtgtaaa accacctatt aaaaaggcta taaaaataac caaaaaaaac cacataggaa
     1261 taatggcaac agaatcttca atcaacagta aagaattgga tgaattgata aagttggaaa
     1321 tcccacagga tattttcgtc tctaaataca atgcatcttc tctaatcccc ttaatagaag
     1381 atggaacttt tttgagcaat aggaaaaaaa tagaacaatt cataactcaa atactaggaa
     1441 atgttgataa tattgatgta ataacattat ctagtacaca tttaccattt atattagatc
     1501 agttaaatca gatttatcca catgtaaaat ttctggatcc agccgaatca atagttaaag
     1561 atctaaaaaa atttttaata gataacaagt taaacaataa gattaaaaat ggcaaaatga
     1621 ggatattagt ttcagataat aaaaaaaagt ttcaagaaat tttaagacaa attggtagaa
     1681 aagaaaaaat tgaagaggtt ttttggtcta tttaaatatg acaaaaagaa tatgtatgta
     1741 tatataataa ttgacccaaa taataagata agattaggaa ccttaacgtg tattagttaa
     1801 tgaacagaaa gattagagtc ggaattgatg ttggcgggac ttttacgaaa gctatagcta
     1861 tagatataac atcaggtaca tttattggca aaacgactgt tccaactacg cataattctg
     1921 aaagaggtgt agccgatgga ataattattg cattaagaga tttaatcaaa cattttagta
     1981 tagaaagatc tgaaattgaa ttaatctcac acagcacgac ccaagctgtg aatgccctac
     2041 ttgaagggga caccgtcaaa gttggcatta tcggaatggg tgtgggatta gaaaaatcta
     2101 atgtagttaa aagaacaaac ataaaaaacg tagagctctc ccttcataag tatttacaca
     2161 cttgttatag gtttatggat acctcaaaat atcttgatat aaatgaaatc atttttacta
     2221 ttgcttcact taaaaaggaa ggagcagatg tattagtggt tagtgaagca tatggtgtgg
     2281 atgatcctag caatgaaaaa tatgtaatga actattctga tatacctatt actggcggtc
     2341 atgaattaac aggcatttat ggattagaaa ttaggacatt aactgctgct attaatgcag
     2401 gaataatgcc aaaagcaatt agtactgcaa aatatgtgga agaagcagtt agaaaggaga
     2461 atatatcgtg tcctattatg ataatgaaag gagatggagg agtaacagat attgatacgt
     2521 ttaaaaataa acctatttta acaatattat ctggtccagc ggctagtgtt gctggtgctt
     2581 tattatattc gcacatttta cacggggttt tcatagagat agggggtaca tctaccaata
     2641 tatccattat aaaaaacgga aaacctgaaa ttagatatgt ttctataatg gatcatccta
     2701 cctgcatacg ttcggttgat gttagagtgg ccggtgttgc aggtggctct ttaattagaa
     2761 tttctaatca gaaaattatt gatgtgggac cccgat
//
LOCUS       DATCMF010000455         3776 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_129749, whole genome shotgun sequence.
ACCESSION   DATCMF010000455 DATCMF010000000
VERSION     DATCMF010000455.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3776)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3776)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3776
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_129749"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..447)
                     /locus_tag="VIL14_05790"
     CDS             complement(<1..447)
                     /locus_tag="VIL14_05790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dCMP deaminase family protein"
                     /protein_id="HEY8523254.1"
                     /translation="MLNWNKVRPTWDEYFMLQAEIAKLRSNCLTRQIGAVIVRDNRQI
                     ATGYNGTPPGILNCIDGGCKRCQERINGKLNSGVNLERCLCTHAEANAIMQCALFGNG
                     SSTKGTTLYSTFAPCLECSKMCITVGIKRIVVLHDYPEDGNILLQEA"
     gene            577..1137
                     /locus_tag="VIL14_05795"
     CDS             577..1137
                     /locus_tag="VIL14_05795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523255.1"
                     /translation="MRSSLQKNEEKRARTIFLVVFYFCATTMFLITIYSLYVSIEEYL
                     STGKVVIGEVLVNTEFPFPGLAKLVTYLMIVTVVGWYCVTKLGTDKVNTIPESIKAIF
                     QLIVLAIMVISLYEFVYNFVIWNSFITVDAINGIIRLDDINVPYPNPNTPWNPVFATK
                     MSLSALLISAHGFYLISKHKPQHKIV"
     gene            complement(1169..2551)
                     /locus_tag="VIL14_05800"
     CDS             complement(1169..2551)
                     /locus_tag="VIL14_05800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEY8523256.1"
                     /translation="MVSSIEKIVDSEINTMISDLKTLINIASVSAKDQNLVECAEAVF
                     ALMNRVGIKSEIIYLDPKDKNIAASSLPPPVVYGEIKSQKNPNGKTILFYNHYDVQPE
                     DPLDHWDVPPFSGEVSGNYIYGRGSSDDKGELITRIKAVEYFLRETGDVPCNIKFIVE
                     GEEEIGSIHIEKYLTKYKEKFACDGIIWEFGYINEKNIPIISLGMKGLLYVELIAYGP
                     NKDTHSSLAVIVENPAWNLIKLLNSMRDENGRILISDWYNDIRNFNQEEEKILNLELF
                     EANEFKKEYGISRFLGDISGIDVKKALCGSPTCNISGFVSGYIEQGAKTIIPSFAKVK
                     LDFRLVPNMDPQKQFAKLQQHIKDLGFKNININFIHGEAAARTSPNDPFVKIITESAK
                     RVFGDVILNISSAGTGPMHSFQKILKASSVSIGSTYVYSRIHSPNEFARIDLLINITK
                     CIGEIMENYN"
     gene            2690..>3776
                     /locus_tag="VIL14_05805"
     CDS             2690..>3776
                     /locus_tag="VIL14_05805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HEY8523257.1"
                     /translation="MTSSSFLSFDSKNIFFNPQSIAVIGASEKAGVGKAIFSNIINGY
                     KGKIYPITPSNPTVFGINAFKSVIDVPEDIDLAVIATPNKIVPQVMEEIGKKKIKGVI
                     IVSAGFKEVDESGAQLEKQIGDIGKQYGTRIIGPNCLGIMSLSQSSMMNATFLKITPE
                     VGGIALVSQSGAICAATVEDAIAQGIGFSKVISMGNKVDMDENDILELLSEDDDTKVI
                     VMYLEDIHDGKRFMQIAKRITKEKKKPILVLKAGRTPEGAKAAMSHTGALMGSDETYD
                     ALFKQSGVIRVDTMQELFETSTAFAKQPIPPSNGGVVIVSNAGGPAIISTDACSKYGL
                     KMADISQSESEIAKVIPPHGSAKNPVDI"
BASE COUNT         1297 a          600 c          575 g         1304 t
ORIGIN      
        1 tgcttcttgt aataatatgt taccatcttc aggataatca tgtagaacaa caattctttt
       61 aatacccaca gttatgcaca ttttactaca ttctaagcaa ggcgcaaatg tactatacaa
      121 ggtagtacct tttgtgcttg aaccgtttcc aaataatgcg cattgcatta ttgcattagc
      181 ttcagcgtga gtgcataaac atctctctaa atttactcct gaatttaatt ttccattaat
      241 tctttcttga catcttttgc acccaccatc tatgcaatta agtattcccg gaggagttcc
      301 attataacct gttgctatct gcctattgtc cctaactata actgctccta tttgcctggt
      361 aaggcaatta gatcttaatt ttgcaatttc agcttgaagc ataaaatatt catcccatgt
      421 tggccggact ttgttccaat ttaacatatt ttttccttgc ataaactaat tttggatctt
      481 aactataata atataagcat aaatattgca ttataatact aaaaattttt atgtgaattt
      541 ataattaaga tcaataaatt aggagtaaat aatattatgc gtagttcttt acaaaaaaat
      601 gaggagaaaa gagcaagaac aatatttctt gttgtatttt acttttgtgc tacgacaatg
      661 ttcctaatta ctatttactc tttatacgta agtatagaag aatatttaag tacaggaaaa
      721 gtagttatag gtgaagttct tgtcaataca gaatttccct ttccaggatt agcaaaattg
      781 gtaacttatt taatgatagt tactgttgtt ggttggtatt gcgttacaaa attaggaaca
      841 gataaagtaa acacaatacc tgaatcgata aaagctattt ttcaattaat cgttcttgct
      901 ataatggtga tatcgttata tgaatttgtt tataattttg ttatatggaa ttcattcatt
      961 acagtagatg caataaatgg aataatacga ttagatgata taaatgtgcc ctatcctaat
     1021 cctaatacac catggaatcc agtatttgct accaaaatgt ctttatcagc tctactaatt
     1081 tctgctcatg gattttatct tatctcaaaa cataagcccc aacataaaat agtttaatgt
     1141 gtaaaaagaa attttttatt agttgcaatt aattatagtt ttccataatt tctcctatac
     1201 attttgtaat attaatcaaa agatcaattc ttgcaaattc atttggcgaa tgtattctag
     1261 aatatacata tgtactgcct attgaaacag aagacgcttt gagaatcttt tgaaatgagt
     1321 gcatcggccc agtcccagct gatgagatat ttaaaattac atctccaaaa actctttttg
     1381 ctgactctgt tattatttta acaaatggat catttgggga agttctcgct gctgcttctc
     1441 catgaatgaa attgatattt atatttttga aacctaagtc tttaatatgt tgttgaagtt
     1501 tagcaaattg tttttgtgga tccatattag gaacaagacg aaagtcaagt ttaacttttg
     1561 caaatgaggg aattatagtt ttagcaccct gttctatgta tcctgaaaca aaaccagaaa
     1621 tattacatgt aggagaacca cataaagctt ttttaacatc aattccagaa atatcaccta
     1681 gaaatctgga tataccatat tcctttttaa attcatttgc ttcaaacaat tctaaattaa
     1741 gaattttttc ttcttcttga ttaaaatttc ttatatcatt ataccaatcg gaaattaata
     1801 ttcgtccatt ttcgtctctc atactattaa gtaatttaat taagttccat gctggatttt
     1861 ccacaattac tgctaaactg gaatgagtat ctttatttgg accataagca atcaattcaa
     1921 catacagtaa acctttcatc cctaaactta tgatgggtat atttttttca tttatatatc
     1981 caaattccca tataattcca tcacaggcaa acttttcttt gtatttggta agatattttt
     2041 ctatatgtat acttcctatt tcttcttctc cttctacgat aaatttaata ttgcatggaa
     2101 cgtcacctgt ttctcttagg aaatactcta ctgcttttat tctagtaatt aattcgcctt
     2161 tatcatctga tgatcctctt ccataaatat aatttccaga aacctcgcca ctaaaaggag
     2221 gaacatccca gtgatctaaa ggatcttcag gttgaacatc atagtgatta taaaataaga
     2281 tagttttgcc atttggattt ttttgtgatt ttatttctcc atatactaca ggaggaggaa
     2341 gagaagaggc tgcaatattt ttatctttag gatcaagata aataatttcc gatttaatcc
     2401 ctactctgtt cataagagca aaaactgcct ctgcacattc aacaagattt tgatcttttg
     2461 cagaaacact agcaatgtta atcaatgtct taagatcaga aatcattgta ttaatctctg
     2521 aatcaacaat tttttctatc gagcttacca atattttaaa tttgtaaaag aataatttaa
     2581 cttttcataa aaaagtacat attgataatg agatggtttg aattatgaat atattttaat
     2641 ataatcgtaa caggaataca tataaccatg tttttgtgaa acgataataa tgacgtcctc
     2701 atcattctta tcttttgact caaagaatat tttctttaat ccacagtcaa ttgctgtaat
     2761 tggagcttct gaaaaggcag gagtgggaaa ggctatcttt tcaaatatta ttaatggtta
     2821 taaaggaaaa atatacccta ttactccatc taatcccact gtctttggaa tcaatgcttt
     2881 taaaagcgtt atagatgtac cagaagatat tgacttggca gtaatagcca ctccaaacaa
     2941 gattgttcct caagtaatgg aagaaatagg aaaaaagaaa atcaaaggag taataatagt
     3001 ttcagcagga tttaaagagg ttgatgaatc tggggctcaa cttgagaagc agattggaga
     3061 tattggtaaa caatacggaa caagaataat tggtccaaat tgtttaggaa taatgagctt
     3121 atctcaaagc agcatgatga atgctacatt tttaaaaatt acaccagaag ttggaggaat
     3181 agctctagta tcacaaagtg gtgctatatg cgctgctact gttgaagatg ctatagctca
     3241 aggaataggc ttttcaaaag taattagtat gggaaataaa gtagatatgg atgaaaatga
     3301 tatattagaa ctactttcag aagatgatga tacaaaagta attgtcatgt atctagagga
     3361 tattcatgat ggaaaaagat ttatgcaaat agctaaaaga ataactaaag aaaaaaagaa
     3421 acctattctt gtattaaaag caggaagaac acctgaagga gcaaaagctg ctatgtcaca
     3481 taccggtgct ttgatggggt ctgatgaaac atatgatgct ttgtttaaac aatcaggagt
     3541 tataagagta gacaccatgc aagaattatt tgaaacatct acagcttttg cgaaacaacc
     3601 aatacctcct tcaaatggtg gagtagtcat agtatcaaat gcaggtgggc cagccataat
     3661 ttctacagac gcttgttcaa aatatggatt aaaaatggca gatatttctc aatcagaatc
     3721 agaaatagcc aaagtcatac ctcctcatgg ttcagctaaa aaccctgttg atatag
//
LOCUS       DATCMF010000456         2878 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_459516, whole genome shotgun sequence.
ACCESSION   DATCMF010000456 DATCMF010000000
VERSION     DATCMF010000456.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2878)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2878)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2878
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_459516"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1578)
                     /locus_tag="VIL14_05810"
     CDS             complement(<1..1578)
                     /locus_tag="VIL14_05810"
                     /inference="COORDINATES: protein motif:HMM:NF012550.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aconitase family protein"
                     /protein_id="HEY8523258.1"
                     /translation="MINKVETTPELVSAVYKKSRKNISYYKEKIKNDNLTLSEKILIG
                     HLFDMEKDDQNKNLERGKSYVLLRPDRVALQDVTGQMTLLQFMQSRLKRTTLPTTVHC
                     DHLIQARIEGVSDTKAALYENNEVFKFLESSSRKYGVGFWKPGAGIIHQVVLENYAFP
                     GGLMIGTDSHTPNAGGLGMIAVGVGGLDAAETMAGMPWEILYPKRIGVYLTGKLNGWT
                     APKDIILYVASKLTVSGGTNAIIEYFGPGSKSISCTGKATITNMGAEIGATCSIFDYD
                     VRMETYLQSTNRADIAEVANENIDILTQDPEVEAEPEKYFDKVIRIDLSTLEPYIVGP
                     HTPDLGRPISQMKQDVLRNKYIDKISVALVGSCTNSSYEDMSRASGIAEQADQNGAKT
                     KTSLLVTPGSEMIRATIERDGQMKILKDIGATVLANACGPCIGQWSRPEIKIGEPNTI
                     VTSYNRNFPGRNDGKRDTMNFIASPEIVIALALGGKLSFNPLTDIIEAKDGTKFKLEP
                     PPLAPEVPSKGFANVKDV"
     gene            complement(1757..1909)
                     /locus_tag="VIL14_05815"
     CDS             complement(1757..1909)
                     /locus_tag="VIL14_05815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523259.1"
                     /translation="MDIDKGYPMVLEDKKAENAKKIENNKDIEDDQELKEELNEWEVE
                     STEAGD"
     gene            complement(2000..>2878)
                     /locus_tag="VIL14_05820"
     CDS             complement(2000..>2878)
                     /locus_tag="VIL14_05820"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HEY8523260.1"
                     /translation="GYIMKKNLRTSLVFGYSKWFFAEKPVIYILLFTYLFITLLPLVW
                     VLSTSFKSNEEAISLPPQFIPNNPTFENYIFVMTEPHIMHSLFNSFIVSIGSTILSVA
                     ISALGGYAFARFQFKGKNILLSVILGLFMIPVLINIIPLYIMFSQIGLLNSLLGLILT
                     FQILIIPLNIFLLKSYFETIPRELEEAALIDGCSTLGVLRRITIPLSMPGFAIAAVLA
                     FRFSWNEFILPIVLANRPDSMVFQVALYEFVSLYSIEWGYLTAGINIALIPILVLMLI
                     FQKQMVRGLTLGAIRH"
BASE COUNT          948 a          516 c          413 g         1001 t
ORIGIN      
        1 aacatccttt acatttgcaa acccttttga tggaacttct ggggccaatg gtggaggttc
       61 aagtttgaat tttgttccat cttttgcttc aattatatct gtaagtggat taaacgagag
      121 ttttccacca agagccaagg caattacaat ttcagggctg gctatgaaat tcattgtatc
      181 tctcttacca tcatttctac caggaaaatt cctgttgtat gatgtaacaa tagtattagg
      241 ctctccaatt ttgatttcgg gtctactcca ctggccaata catggaccac aagcatttgc
      301 taaaacagtt gcaccgatat ctttgaggat tttcatttgt ccatctcgtt caattgttgc
      361 cctaatcatt tccgacccag gtgttaccaa aagcgaagtt ttggttttag caccattctg
      421 atcagcttgt tcggcaatac ctgatgctct tgacatatcc tcataagaag aatttgtaca
      481 actaccaaca agagctactg aaatcttatc gatatattta tttcttaaaa catcttgttt
      541 catttgggaa attggtctac ctaaatctgg agtatgagga ccaactatgt agggctctaa
      601 agtggataaa tcaattctaa ttactttatc aaaatacttt tctggttcag cctccacttc
      661 tggatcctgt gttaaaatat caatattttc attagcaacc tcagcaatat cagctcgatt
      721 tgtagattga agatatgtct ccattcttac atcataatca aaaattgaac atgttgctcc
      781 aatctctgcg cccatgttcg ttatagtagc ttttccagta caactaattg atttggaacc
      841 aggaccaaaa tattctatta ttgcatttgt acccccagaa acagttaatt ttgatgctac
      901 atacaaaatg atatctttcg gagctgtcca tccatttaac tttcctgtca gataaactcc
      961 tattcgttta ggatataaaa tctcccatgg catacctgcc atagtttctg cagcatccaa
     1021 tccaccaact cctacagcta tcatacccaa tcctccagca ttaggagtat gtgaatcagt
     1081 ccctatcatt aaaccaccag gaaaggcata attttccaat actacttggt gaattattcc
     1141 tgcaccaggt ttccaaaatc ctacaccata ttttcttgat gaagattcta agaatttaaa
     1201 aacttcattg ttctcatata atgcagcctt ggtatcagaa actccttcta ttcgtgcttg
     1261 aattaaatga tcacaatgaa cagtagtggg taaagtagtt cgctttaaac gtgattgcat
     1321 aaattgtaaa agtgtcattt gacctgttac atcttgtaat gcaactctat caggacgtaa
     1381 taagacataa ctttttcctc tttctaaatt tttattttga tcatcttttt ccatatcaaa
     1441 aagatgtcct atcaatattt tttcactcaa tgtaagattg tcgttcttga ttttttcttt
     1501 ataatatgaa atatttttcc tagatttttt ataaacagca gaaaccaatt caggagtagt
     1561 ttctactttg tttatcatag tcatgtgttt tacattaata attatgtcat acggatataa
     1621 gaaatttctt aatcagttta tgtatatttt aaaatgtaat tacaagtatt ttgtagaaga
     1681 tacataagag taataatata cgatttaagt aaaattataa ttaaatatta ttgtttgacc
     1741 atttgtttag agattgttaa tctcctgctt cagttgattc gacttcccat tcatttaact
     1801 cttccttaag ttcctggtca tcttcaatgt ctttgttatt ttctattttt ttagcatttt
     1861 ctgctttttt atcttctaat accataggat atcctttgtc tatatccaat aaattattta
     1921 ctaatattat taaacgagaa taaaataaga tctctataac atacaaattt tatatttcca
     1981 ttctattaaa taaaaaactt taatgtctaa tagcacccaa tgtgagtcct ctgaccattt
     2041 gtttttgaaa aattaacatc aatactaaaa ttggaattaa tgctatattt attccagcag
     2101 ttaaataacc ccattcaata ctatagagag agacaaattc atataatgcc acctgaaaaa
     2161 ccattgaatc tggcctatta gccaaaacta ttggaagtat aaattcattc caagagaatc
     2221 taaatgctag gactgcagca atagcaaagc caggcattga taagggaatg gttattcttc
     2281 ttaatactcc taaagttgaa catccatcta ttaatgccgc ctcttctagc tctcgaggaa
     2341 tagtttcaaa atagcttttt agcaaaaata tatttaaagg aatgattaga atttggaaag
     2401 tgagtattag acctaaaagc gaatttaata gtcctatttg agagaacata atataaagtg
     2461 gaataatatt tatcaaaact gggatcataa aaagtcctaa aataacacta agcaaaatat
     2521 ttttaccttt aaattgaaac ctagcaaatg cataacctcc caaagcgctt attgcaacac
     2581 ttaggatggt acttcctatg ctgacaatga agctattaaa aaggctatgc atgatatgtg
     2641 gttctgtcat tacaaaaata tagttctcaa atgtaggatt gtttggaata aattgcggtg
     2701 gaagtgaaat tgcttcttca ttagatttaa aagaggtaga aagaacccac acaagcggta
     2761 acaaagtaat aaaaagatat gtaaataaca atatgtaaat aactggtttt tcagcaaaga
     2821 accatttaga atatccaaat accaatgaag tacgcaaatt ttttttcatg atgtatcc
//
LOCUS       DATCMF010000457         1775 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_326485, whole genome shotgun sequence.
ACCESSION   DATCMF010000457 DATCMF010000000
VERSION     DATCMF010000457.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1775)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1775)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1775
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_326485"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            162..1217
                     /locus_tag="VIL14_05825"
     CDS             162..1217
                     /locus_tag="VIL14_05825"
                     /inference="COORDINATES: protein motif:HMM:NF012517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HEY8523261.1"
                     /translation="MKFIGYWTSQEQYSMHDLIKFVIEAEKGGFTTTMTSDHFHPWWH
                     DNGYGNFTWIWLAAAAERTKNMKFITGVTAPVYRYNPAIIAQAFASLDVLYPGRIALG
                     VGTGEAMNEVSVGFDWPSADIRLKRITEAIQIIKKLWNKKEKKNQANYDTLYNRKENN
                     DEGFVNFNGEYFKIRNAKLYTPPSTNIPLYMAASGSEATKIAAKYSDGLITISKPDKV
                     KDMFDIFDKAILEENKEPNSLQKIGKPKISYSEDYDRAFRASEFWRAGDIEDVFNTDI
                     NDPRALQQKAKQEVSDDKLKKSTLIVTSIEDLIKPIEQYFQAGFTQIYVHSTSPNELE
                     FVQKFCTKVLPYFKDSK"
     gene            1330..1470
                     /locus_tag="VIL14_05830"
     CDS             1330..1470
                     /locus_tag="VIL14_05830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523262.1"
                     /translation="MSYNTIISTNQEIGKTIASEKFLNTMDGFWFALNPNVIINSSTL
                     SQ"
     gene            1476..>1775
                     /locus_tag="VIL14_05835"
     CDS             1476..>1775
                     /locus_tag="VIL14_05835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523263.1"
                     /translation="MFDSKTIGIVKELQSVAEGDYKNYLSDYHKIPPTKEQLRLEKKD
                     EEEKQLPLSKRQSNGVVLAKVAIMANTEIKVQGYKKNISINFPVGIGKTVRFATVE"
BASE COUNT          704 a          233 c          299 g          539 t
ORIGIN      
        1 aattgataag aaaagatctc tactaacagt atttgtgact ggtactcata acctataaat
       61 atatgctgaa aaatttaggt cttgaaaaaa tttataatta aaaatagtta gatatcgcaa
      121 acaggctata gcttataaag agaatattca tatctaaata tatgaaattt attggatatt
      181 ggacatctca agagcaatat tctatgcatg atttaattaa atttgtaatt gaagctgaaa
      241 aaggaggttt cacaacaact atgacaagcg atcattttca tccttggtgg catgataatg
      301 gatatgggaa ttttacatgg atttggctag cagctgctgc cgaaaggaca aaaaacatga
      361 aatttataac tggtgtaaca gctcctgtat acagatataa tcctgcaata attgcacaag
      421 cctttgcatc acttgatgta ttatatccag gtcgaattgc tcttggagtc ggtacaggag
      481 aagcaatgaa tgaagtttct gtaggttttg attggccttc tgcagatata agattaaaga
      541 gaattaccga agcaatacaa attataaaga agttatggaa taaaaaggaa aagaaaaatc
      601 aagcaaatta tgatacatta tataatagga aggaaaataa tgatgaagga tttgtaaact
      661 ttaatggaga atattttaaa attagaaatg ccaaacttta cactcctcca tcaacaaata
      721 ttcctttgta tatggcagct tccggctctg aagcaactaa aatagctgca aaatatagtg
      781 atggattgat tacaatttcg aaacctgata aagtaaagga tatgtttgat atttttgata
      841 aggcaatact tgaagaaaat aaagaaccta atagtcttca gaagataggt aagccaaaga
      901 tatcgtattc tgaagattat gatagagcat ttagagcatc agaattttgg agggccggag
      961 atatagaaga tgtatttaat accgatatta atgatccacg agcattacaa caaaaagcaa
     1021 aacaagaggt ttcagatgat aagctaaaga aatcaacatt aatagttact tccatagagg
     1081 atttaatcaa acctattgaa cagtattttc aagcaggatt tactcaaata tacgtacata
     1141 gtacaagtcc aaatgaatta gaatttgtac aaaagttttg cactaaagta ttaccttatt
     1201 ttaaagatag taaatagtat aagaaagggc ttaactgatc taaacaattc tatttcgaaa
     1261 acttcagaaa aattattttg caatatttct actttaagat atttatcttt tattacaata
     1321 ttttaactaa tgtcatacaa tacaataatt tctacaaatc aagagattgg aaaaactatt
     1381 gcttctgaaa agtttcttaa tacaatggat ggtttttggt ttgctctaaa tcctaacgta
     1441 atcataaact cttcgacttt gtcacagtag ataatttgtt tgatagtaag actattggaa
     1501 ttgtaaaaga attacaatca gttgctgaag gtgattataa gaattattta tctgattacc
     1561 ataaaatacc ccccactaaa gaacaattga ggctagaaaa aaaagacgaa gaagaaaaac
     1621 aattaccgct ttctaagaga caatcgaacg gagttgtatt agcaaaagtg gctataatgg
     1681 caaatacaga aatcaaagta caaggatata aaaagaatat atctataaat tttccagttg
     1741 gaataggtaa aacggttaga tttgctactg tagaa
//
LOCUS       DATCMF010000458         1688 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_130752, whole genome shotgun sequence.
ACCESSION   DATCMF010000458 DATCMF010000000
VERSION     DATCMF010000458.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1688)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1688)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1688
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_130752"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            336..818
                     /locus_tag="VIL14_05840"
     CDS             336..818
                     /locus_tag="VIL14_05840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NusA-like transcription termination
                     signal-binding factor"
                     /protein_id="HEY8523264.1"
                     /translation="MTEKIKLTSDELRLISLFQSITSATARDCIVDEKMDRVIFVVNK
                     GQMGLAIGKGGTTIKQLQNVIPRRIELVEYSDNEDEFLKNILNSNMINEIKINKRIDG
                     TKQAIVVVDSKKKGVVVGKEGRNAEKARLLAKRYFHISNVLILSPEQTTTNDNNGVNM
                     "
     gene            820..1257
                     /locus_tag="VIL14_05845"
     CDS             820..1257
                     /locus_tag="VIL14_05845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018039449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HEY8523265.1"
                     /translation="MAKSPLGLFAGRVLESKRKRSRWANKYYKRRVLLLDKKTNPMEG
                     APQARGIVLEKVGIESKQPNSAVRKCVRIQLIKNGKSITAFLPRDGALNFVDEHDEVI
                     VEGIGGSMGGAMGDIPGVRWQVFKVNGVSLKELVYGRKEKPRR"
     gene            1260..>1688
                     /locus_tag="VIL14_05850"
     CDS             1260..>1688
                     /locus_tag="VIL14_05850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017682.1"
                     /note="binds directly to 16S rRNA where it nucleates
                     assembly of the head domain of the 30S subunit; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HEY8523266.1"
                     /translation="MSGKENIKILLFNKWETSNIEINDPGLTRVISLNPSMVIPVSFG
                     RHEHQRLKKAEVNLIERLANKLMRFGKKYAKNTGRMGGKKAKSLNVVKTAFEIIHLET
                     GKNPVELLVRAIENSSPNEDTTRIVYGGVVYHVSVDVSPLR"
BASE COUNT          630 a          217 c          325 g          516 t
ORIGIN      
        1 ttaatccttc ttttaaaata tagacgatta ctataatagt aatgagaaaa ttatctttca
       61 acattggatc tattctagat ttttcatttt gggattatca atggagtcgt tttgtgtatc
      121 tttttttgta tttccaatca ataatttaat gagaaagagt atctgaaaaa gcaattatag
      181 tgtttgaaag ccagaatata ttgtgtggtt atctccataa tgattttatc gaccctccca
      241 aaatatcatt aaaatataaa ttatacttta ttacacagca tgttattatt tgatgtatga
      301 caattcaaaa ttggaattag aggtattatg gtataatgac tgaaaaaata aaattaacat
      361 ctgatgaact taggcttatc tccttgtttc aaagcattac tagcgctact gcaagagatt
      421 gtatagtaga tgaaaaaatg gatagagtga tttttgttgt aaataagggt caaatgggcc
      481 ttgctattgg caaaggagga acaacgataa aacaattaca aaatgttatt cctcgaagaa
      541 tagaattagt tgaatattct gataacgaag atgaattttt aaaaaatatt ctcaattcca
      601 atatgattaa tgaaataaag attaataaaa ggatagatgg tacaaaacag gcaattgttg
      661 ttgttgattc aaaaaaaaag ggtgttgtag ttggaaaaga aggtagaaat gctgaaaaag
      721 ctaggttact tgcaaagcgt tatttccaca tatcaaatgt tcttatattg agtcctgaac
      781 aaacaactac taatgataat aatggtgtga atatgtaaaa tggctaaatc tcctttgggc
      841 ttgttcgctg gacgtgtact tgaatcaaaa agaaaacgtt ccagatgggc aaacaaatat
      901 tataagagac gagtattatt acttgacaag aaaactaatc ctatggaagg agctcctcaa
      961 gctagaggta ttgttttaga aaaagtcggt atagaatcaa aacaacctaa ttcggcggtc
     1021 cgtaaatgtg taagaattca attaataaaa aatggaaaat caataactgc atttcttcct
     1081 cgagatggtg ctttgaattt tgttgatgaa cacgatgagg taatagtaga gggcatcgga
     1141 ggttcaatgg gaggtgcaat gggtgacata ccaggtgtac gatggcaggt attcaaagtt
     1201 aatggtgtat cgttaaagga attagtttac ggtagaaagg aaaaacccag gcgataaaca
     1261 tgagcggaaa agaaaatata aaaattttgt tatttaacaa atgggagacc tctaatatcg
     1321 aaattaatga tcctggctta actcgggtta tttctctaaa tccctcaatg gtaattcctg
     1381 tatcttttgg aagacatgaa catcaaagac taaaaaaagc tgaagtgaat ctaatagaaa
     1441 gattagcaaa taaattaatg cgtttcggaa aaaaatatgc aaagaatacg ggtagaatgg
     1501 gtggaaaaaa agcaaaatca ctaaatgttg ttaaaaccgc tttcgaaata atacacttag
     1561 aaaccggaaa aaatcctgtc gaattattag taagggctat agaaaattct tctccaaatg
     1621 aggatacgac gagaattgta tacggtggtg ttgtctatca cgtttcagta gatgtttctc
     1681 ctctccga
//
LOCUS       DATCMF010000459         2617 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_326797, whole genome shotgun sequence.
ACCESSION   DATCMF010000459 DATCMF010000000
VERSION     DATCMF010000459.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2617)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2617)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2617
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_326797"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..299)
                     /gene="yciH"
                     /locus_tag="VIL14_05855"
     CDS             complement(<1..299)
                     /gene="yciH"
                     /locus_tag="VIL14_05855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response translation initiation inhibitor
                     YciH"
                     /protein_id="HEY8523267.1"
                     /translation="MAVICKKCGLPDDLCPCGELEKEETRIIIRLETRRFSKTTTMIE
                     GIDPKVTNMHNIVKELKSQFACGGTAKDGFIMLQGDHREDVKSYLVKKGFNQEAI"
     gene            436..612
                     /locus_tag="VIL14_05860"
     CDS             436..612
                     /locus_tag="VIL14_05860"
                     /inference="COORDINATES: protein motif:HMM:NF015846.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit Sec61beta"
                     /protein_id="HEY8523268.1"
                     /translation="MSSKKKNAPLPASSAGLLRFFEDETKGVKVKPEIVLGVTGALIG
                     ISIMIRVIFPVLGA"
     gene            630..2426
                     /locus_tag="VIL14_05865"
     CDS             630..2426
                     /locus_tag="VIL14_05865"
                     /inference="COORDINATES: protein motif:HMM:NF021370.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2070 family protein"
                     /protein_id="HEY8523269.1"
                     /translation="MENGHDSVSNIHRRWSLTRINFSSYKISLTISIISSLIIILIFD
                     HFYLLVNLIQLAVFTITGISFLIFSYFLDLFLLRKTPVNKLSKILHVSAFSSLLWLLI
                     VILGYIIFIIFQKDLPSKEYLIEGMMLAIGLRIGIFTSVFGANLLQAIKTAIIQPIVF
                     LFLIIPSSIFIEIFSDVVAISFGLILIGLGIGWTILADRSGRPNLQSTFALLQAFLSA
                     WTENKVENIEKILLSKSKNELVGTFIVKFSNKHHNLYWVLPNIHPGPFKEIGGSNLPY
                     QIYNYFSQKAVVFHSPSDHSLNIPSKGEVLEYLKSLSNTQKTLDYGSTCSIPIQIKNK
                     KATVTGIIFDNTPILMLSFAPYGMEDIPEEISKELETYSKNEGFKRLFIIDSHNAMGK
                     KIGKSENEELLVAGKTCLKILKKSPQYSFKIGLSNTKEIKNHIVFGEDIGKSGLSIIL
                     IDVNKNDDNNSNHNNQYVIGWADSNNMKSGLREYIIKFLEQKGIRMLEICSSDTHENS
                     GFRTSEGYYPFGHITKFETIADHYYKLIELAYKKLEVYGYEVFHIVSTVKVMGTNQFR
                     DYSNALDKAMNLTKKFLIITFGVILLMLIVTN"
BASE COUNT          920 a          393 c          380 g          924 t
ORIGIN      
        1 tctattgctt cttggttaaa tccttttttt actaaataac ttttaacatc ttcacgatgg
       61 tcaccttgta acataataaa accatcttta gcagttccac cacacgcaaa ttggctttta
      121 agctctttaa caatattatg catattggtt actttaggat ctatgccttc tatcatagtt
      181 gtagtctttg aaaatctccg agtttcaagg cggattatta ttcttgtctc ttctttttct
      241 agttcaccac aaggacataa atcatcaggt aatccacatt ttttacatat aaccgccata
      301 atatatttat ctatactttt cctaacttct tattaagcct tacccagtac ctttataatg
      361 attttataaa aataaaatct atctgattac agtaaacgat agctatttaa gtagtaatgt
      421 tttatgtttt atgaattgag cagcaaaaag aaaaacgcac cattaccagc ttctagtgcg
      481 ggtttactaa gattctttga ggatgaaact aaaggagtca aagtaaaacc tgaaattgtt
      541 cttggagtta caggagcttt aattggaatt tccatcatga ttagagtcat atttccagtt
      601 ctcggagcat aacagctcaa tagcatgaga tggaaaatgg ccatgacagt gtatctaata
      661 ttcacagaag atggtctcta actcggataa atttttcgtc atataaaatt tctttaacaa
      721 tatccataat tagttcttta attataatct taatttttga tcatttctat ctactagtga
      781 atttaataca attagctgta tttacaataa caggcatatc ttttctaatc ttcagttatt
      841 tcttagatct ttttttgtta agaaaaacac cagttaataa actgtccaaa attctccatg
      901 tttcagcttt ttcgagttta ctatggttac tcatcgtgat ccttggctac attattttta
      961 ttatttttca gaaagatctt ccttctaagg aatatctaat tgagggaatg atgttagcga
     1021 tcggactaag aataggaata tttacttcag tttttggtgc taatttacta caagcaataa
     1081 aaactgcaat aattcagcct atagtttttc tatttttaat tattccttcc tctatattta
     1141 tcgaaatctt ttccgatgtt gtagcaattt catttggttt aattttaata ggattaggta
     1201 taggatggac gatacttgcc gatagatcag gaaggccaaa tttacaaagt acttttgccc
     1261 ttctccaggc tttcctttca gcatggacag aaaacaaggt agaaaatata gaaaaaattt
     1321 tgttatccaa gtctaaaaat gaattggttg gtacatttat tgttaaattt agtaacaaac
     1381 atcataacct ttattgggtt ttacccaata ttcatcccgg tccttttaaa gaaattggtg
     1441 gaagtaatct tccgtatcaa atatataact atttttctca aaaagcagtg gtatttcaca
     1501 gtccttctga tcactccttg aacattccat ctaaaggcga ggtcctagaa tacctaaagt
     1561 cattatctaa tacacaaaag accctagatt atggaagtac atgttcaata cctattcaaa
     1621 taaaaaataa aaaggctacg gttacaggaa taatctttga caatactcct attctaatgc
     1681 tatcttttgc tccttatggt atggaagata ttccagaaga aattagtaaa gaattggaaa
     1741 catattcaaa aaatgaagga tttaagagac tttttataat agacagtcat aatgccatgg
     1801 gaaaaaaaat tggaaaaagt gaaaatgaag agttgttagt agcaggaaaa acatgtctaa
     1861 aaatcttaaa aaaatcccca caatatagtt ttaaaattgg cttatcaaat acaaaggaga
     1921 ttaaaaatca tatagtcttc ggagaagaca ttggaaaaag tggtctttct ataatcctta
     1981 ttgatgtaaa caaaaatgat gacaataaca gtaatcacaa taatcaatat gtaataggtt
     2041 gggctgattc taataatatg aaaagtggat taagagaata tattataaaa tttttagagc
     2101 aaaaaggaat aagaatgtta gaaatttgct catcagatac acacgagaac tccggattta
     2161 gaacctccga aggatattat ccgtttggtc acataacgaa atttgaaaca atagcagatc
     2221 attattataa gcttatagaa ttagcgtata aaaaattaga agtctatgga tacgaagtat
     2281 ttcatattgt atctacagta aaggttatgg gaacgaacca atttcgggac tattctaatg
     2341 ctttagataa agcaatgaat ttaactaaaa aattcttaat catcactttt ggagtaattt
     2401 tacttatgtt gatagttaca aattaaattg atatattatt gtaaggttta attacagaca
     2461 aattctaaac taattcctat tttataatac ttaatctgga tctagaaaat tttgtacttg
     2521 aatattaata tatttgaaat cttactacaa ttatctagca atgcaggtat aatttacttc
     2581 tataaaacat tttgttgtcc tttttagtga tattttt
//
LOCUS       DATCMF010000460         4607 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_326848, whole genome shotgun sequence.
ACCESSION   DATCMF010000460 DATCMF010000000
VERSION     DATCMF010000460.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4607)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4607)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4607
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_326848"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            305..559
                     /locus_tag="VIL14_05870"
     CDS             305..559
                     /locus_tag="VIL14_05870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC ligand binding domain-containing
                     protein"
                     /protein_id="HEY8523270.1"
                     /translation="MPTAYILVNCTLGSEEKIISELTNLPDVKEVRGTYGVHDVFVKV
                     RSNDTESMNNTITNKIRKVPGITSTVTLVVIEEQGGKESL"
     gene            complement(568..774)
                     /locus_tag="VIL14_05875"
     CDS             complement(568..774)
                     /locus_tag="VIL14_05875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523271.1"
                     /translation="MVLRINLQILIISWWLGAATALFSFLLPIYVHHIIVAGIGWSII
                     SISTILIIYEIKKIKEEDKRTKSL"
     gene            complement(987..1097)
                     /locus_tag="VIL14_05880"
     tRNA            complement(join(987..1029,1067..1097))
                     /locus_tag="VIL14_05880"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1024..1026),aa:Phe,seq:gaa)
     gene            1278..1448
                     /locus_tag="VIL14_05885"
     CDS             1278..1448
                     /locus_tag="VIL14_05885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523272.1"
                     /translation="MNNSPNHEPNQVIETAEERKQRFLLEFDQPFKCDKCNERFKKKK
                     YLREHKAEVHSY"
     gene            1506..2084
                     /locus_tag="VIL14_05890"
     CDS             1506..2084
                     /locus_tag="VIL14_05890"
                     /EC_number="2.5.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008817 - corrinoid adenosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cob(I)yrinic acid a,c-diamide
                     adenosyltransferase"
                     /protein_id="HEY8523273.1"
                     /translation="MKIYTKTGDKGLTGLIDGKRIPKSDIRIIAYGSIDELNSYIGLS
                     ISLLSQHRNNNNNKNNQSFSDIIITLNRIQNELFIIGSDLADPDLSKPTSLRVQSPMI
                     TVLENDIDNYEKELSPITYFILPGGSVESSTLHIARSITRRAETNVSKLLLKDTINNL
                     VLIYLNRLSDLLFVLSRTVNKRLQILDIAWKS"
     gene            2386..2940
                     /locus_tag="VIL14_05895"
     CDS             2386..2940
                     /locus_tag="VIL14_05895"
                     /inference="COORDINATES: protein motif:HMM:NF024319.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HEY8523274.1"
                     /translation="MNDYKFSNLIDYILKLKTIKRTGWISKAKILKAESVADHSYSLT
                     ALSMVFSDLLGLNTEKVMKLCIIHDLAESIIGDYMPEEISILDKHIKEDNAMKVIISS
                     FPSKIAILYSELWKEYTLNQTKEVHLVKQLDKMEMYLQATQYFRNGYSFEFLSQFLKI
                     SGNIEGSDFQPTLANILKHLDKNS"
     gene            2955..3281
                     /locus_tag="VIL14_05900"
     CDS             2955..3281
                     /locus_tag="VIL14_05900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523275.1"
                     /translation="MQYFTALKLGEKRVKQSQDLLNLYTGNAAMPALALKDTKTNVWF
                     PVGEENLIAVFKEASGYVIVICDKNGIAKTIAQWFSEEDKNNIVSRIKKDHGLSEYTG
                     KLSLPI"
     gene            3324..>4607
                     /locus_tag="VIL14_05905"
     CDS             3324..>4607
                     /locus_tag="VIL14_05905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00300 family protein"
                     /protein_id="HEY8523276.1"
                     /translation="MSSLDNNNNSNNKVKQEIEVKGHLIDSMILTSIFDNIMDLKGEF
                     RVLEFTIGKNKTDPSYARLIVEGKDKKHLDQILESIYRAGAQPIFTQSVLLEPAPNDM
                     VMPDLFYSTTNKPTQIFYDGIWIDVKNIMMDKCIVVDIHNKIAECKMIRDIKKDDMIV
                     IKERGIRIIPDERPRQGVDIFQFMSSTTSSERPTQHIIKKVASDIYEVAAIQKGKIVV
                     VGGPVIVHSGASQSLSKLIKMGYIHGLLTGNALAVHDIENALLGTSLGMNIDDGTLAV
                     RGHRNHMQSINEVFKAGSIKNMVEQGILKKGIMYECIKNDIPVVLSGSIRDDGPLPDV
                     VIDIVEAQRKYKEVLKDAKMVIMLSSMLHSIAVGNMLPSYVKVIAVDINQSVVTKLLD
                     RGTTQAIGIVTDVGVFLPMVLQYLQEINHHEKNSNS"
BASE COUNT         1722 a          645 c          712 g         1528 t
ORIGIN      
        1 cgttgttatt gtcccatccc ctaacatcac atctactttt ttcatttgca attttggctt
       61 taaaaaatca aagaattctt catcaattgt tttgacagtt tcattaactt ttgtaacgaa
      121 ataatcacta tcttttaatg gtaacctcat gttttcaaat tataattttc aatacatata
      181 gatttgtaat attgtataat aaattgttaa ttttattgcc aatttaacta aaaatttatc
      241 atcatatcta ttatacattg ctaaaaaaaa caaaactaaa atattaataa atctaaatta
      301 agctatgccg acagcatata ttttagttaa ttgtacatta ggttctgaag aaaaaattat
      361 cagcgaatta acaaatttgc cagatgtcaa agaggtgagg ggaacttatg gagttcatga
      421 tgttttcgta aaggttagat ctaatgatac agaatctatg aataatacca taacaaataa
      481 aataagaaaa gtgcctggca ttacatctac tgttactctt gtagtaatag aggaacaagg
      541 cggaaaagaa agtctttaaa tttgttttta tagtgattta gtccttttat cttcttcttt
      601 tatcttcttt atttcatata ttataaggat agtacttata gaaattattg accaaccaat
      661 tcctgcaact ataatgtgat gaacatatat aggaagcaaa aatgagaata atgctgtagc
      721 tgcacccaac caccaactaa ttattaagat ttgaagatta atccttaata ccaatccaaa
      781 tcatcctctt agatcctcat caaatccctt gaaatagcca agtgttttac cacattttgt
      841 gcatttgtta tattcgctaa aatcaaaatc attatacact ctaaaggaaa aggaatcgtc
      901 atgcgaacaa aatattcttc taaatatttg tattatgctt tccaataata cgatatttct
      961 aaattcaatg atataatata aattaatgcc gtcggtgaga tttgagctca cgacagctcg
     1021 gtcttcagct tcacccttga ataattagat aatccattaa tcaagtcgag tgctctccca
     1081 ggctgagcta cgacggcatt aaatattcat ttaaattgac tcaatatata ttctattttg
     1141 taagtattgt tattgctatt gctattaata aaaaatattc ataaaaaaaa tatgtaattt
     1201 tttacataat caatctaaca taactatttt tctaaaacta aataaagatt aaaaataatt
     1261 ttctaggaga aatcataatg aataattctc ctaaccatga acccaatcag gtcatcgaaa
     1321 ctgctgaaga gaggaaacaa cgatttctct tggaatttga tcaacctttt aaatgtgaca
     1381 aatgcaatga aaggttcaag aagaagaaat atctaagaga acataaagct gaagtacatt
     1441 cttactaatt aattagttag ttaaagtata gaatattatt tctctaaatc cagatttagt
     1501 tatatatgaa aatatatact aaaactggag acaagggatt aacaggactt attgatggaa
     1561 aaagaattcc aaagagtgat attagaataa ttgcatatgg ctcaatagat gaactgaatt
     1621 catatatcgg tttatcaata tctcttttgt cacagcatag aaataataat aataataaaa
     1681 ataatcaatc tttttccgat attataatta cgcttaatag aattcaaaat gagttattca
     1741 ttataggctc tgatttagct gatccagacc tttcaaagcc tacttcttta agagttcaat
     1801 ctcctatgat tacagtattg gaaaatgata tagataacta tgaaaaagag ttatctccta
     1861 ttacctattt tattctacca ggtggttctg ttgaatcttc tactcttcat attgctagaa
     1921 gcatcacacg aagagcagaa actaacgttt ctaaattatt gttgaaagat acaattaaca
     1981 atctggttct catatatttg aatagacttt cggatctgct ttttgtacta agtagaacag
     2041 taaataaaag actccaaata ctggatatag catggaaatc ttaaataact tcttgaatag
     2101 aaaaggggga gtagtgtctt taaatgggac aaatacaaaa tgtcgtaata ataatcatta
     2161 taacagtaat gttagctatt gttacatcag gcttagcata tctgtttgat ttgtatttaa
     2221 atccatttat tatcatagca atgacatatt tccatttact aaatgtagaa atctttcaaa
     2281 tagtcttgtc tgtcttacct caatttttta ttcttatgca ataataataa tagtaattag
     2341 atatgaataa ttttaattga attaatatat aattatgaat gtaaaatgaa tgattataaa
     2401 ttcagtaatc ttatagacta tattctgaag ttaaaaacta ttaaaaggac aggatggata
     2461 tccaaagcta aaattctaaa agctgaatcg gtcgcagacc acagctattc attaactgct
     2521 ttgtcaatgg ttttttctga tttattaggt ctgaatacgg aaaaagtaat gaaactgtgt
     2581 ataatacatg acttggcaga atccataata ggagattata tgccggaaga aatttctatt
     2641 cttgataaac atatcaaaga agataatgca atgaaagtaa taatatcttc ttttccaagt
     2701 aaaatagcaa tactttactc agagttatgg aaagaatata cattaaatca aacaaaagaa
     2761 gtacatcttg taaagcaact agataagatg gagatgtact tacaagctac tcaatatttt
     2821 agaaatggtt attcatttga atttttatct cagtttttga agatcagtgg taatattgaa
     2881 ggatcagatt ttcagcctac ccttgcaaat atactaaaac atttagataa gaattcataa
     2941 tatatattct tgttatgcaa tatttcacgg ccctcaagtt aggagagaaa cgtgttaaac
     3001 aatctcagga tttgttaaat ttatatactg gaaatgcagc aatgcctgct ttagctctga
     3061 aggatacaaa aacaaatgtg tggtttcctg ttggagaaga aaacttaatt gctgtattca
     3121 aagaagctag tggttatgtt attgtaattt gtgataaaaa tggaatagct aaaactatcg
     3181 cacaatggtt ttcagaagaa gataaaaata atattgtatc acgcatcaag aaagaccatg
     3241 gtctatcaga atataccggg aaactttctc ttccgattta attaatgctt aattacttaa
     3301 aatatattta tctatattaa aatttgtcgt ccttagataa taataataat agtaataaca
     3361 aggttaagca ggaaattgaa gttaaaggac accttataga ctcaatgatt ttaactagta
     3421 tctttgataa tataatggat ttaaaaggag aatttagggt actggaattc actattggta
     3481 agaacaaaac tgatcctagt tacgctagac ttattgtcga aggtaaagat aaaaaacatc
     3541 ttgatcaaat attagaatct atttacagag ctggtgctca accgattttt acacaaagtg
     3601 tattgttaga acctgcccca aatgacatgg tcatgcctga cttattttat agtacaacca
     3661 ataaaccaac acagattttt tatgatggta tttggataga tgtcaaaaat attatgatgg
     3721 ataagtgtat agttgttgat atacataata aaatagcgga gtgtaaaatg attagagata
     3781 taaaaaaaga tgatatgatt gtaatcaaag agagaggtat acgcattata cctgatgaac
     3841 gtcctcgtca gggagttgac atatttcaat tcatgagcag cactacttca agcgaaagac
     3901 ctactcaaca tattattaaa aaagttgcat ctgatattta tgaagtagca gcaatacaaa
     3961 aagggaaaat agtagttgtg ggcggaccag ttatagttca ttcaggagcc tcccaatcat
     4021 tatctaaact aataaaaatg ggatatatac atggattact tactggaaat gccttagctg
     4081 ttcatgatat tgaaaatgca cttttgggca cttctttagg tatgaatata gacgatggaa
     4141 ctttggctgt gcgtggtcat aggaatcata tgcaatctat taatgaagtc tttaaggctg
     4201 gttccatcaa aaatatggta gaacaaggca tactaaaaaa aggaattatg tatgaatgta
     4261 ttaaaaacga tatacctgtt gtactatctg gttcaattag agacgatggt ccactgccag
     4321 atgtggttat agatattgta gaagcacaaa gaaagtataa agaagtgcta aaagatgcca
     4381 aaatggtgat aatgctttct tcaatgttac attcaattgc tgtaggcaat atgttacctt
     4441 cttatgtaaa agtgattgca gtagatatta accaatcggt agttaccaaa ttattggata
     4501 gaggaactac tcaagcaata ggaattgtaa cggatgtagg tgtatttctt ccaatggttt
     4561 tgcaatattt acaagaaatc aatcatcacg aaaaaaatag caatagc
//
LOCUS       DATCMF010000461         2107 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_460275, whole genome shotgun sequence.
ACCESSION   DATCMF010000461 DATCMF010000000
VERSION     DATCMF010000461.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2107)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2107)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2107
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_460275"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1066
                     /locus_tag="VIL14_05910"
     CDS             <1..1066
                     /locus_tag="VIL14_05910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523277.1"
                     /translation="MTKNKLSKLQMFIISVLVSTALLATTDLLFSNAFAEDDNWYLGE
                     GVTKDMYVKYRISQFDTNNGREFTMTIYFKDQDDKGNWIAPVFVEDQGKVLNGTFILS
                     PLDLTALGTSKIPPEMSKYRSAYAGSLQWLAAFVSKPGQSLTSASWGKIASIGGSEIK
                     PSGHQELNIPAFKDPVDTVRVEYYKGIASNTYIKNEFPYPVMAKAYVDVTTGSAPVQY
                     QYILLETGKGQPVMPETTLFEVIPPLKERTARGDYYVSLDWKPPVITAGNETTFTVDI
                     ADKDQFPASQATYDLIIMDSNNTIIKDLKNQVASEGTKSHNITFEKPGMVTVKIKVTS
                     VKGIDTGIFTEQVEFQIPVK"
     gene            1134..1826
                     /locus_tag="VIL14_05915"
     CDS             1134..1826
                     /locus_tag="VIL14_05915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523278.1"
                     /translation="MSSKKRVILVFGSLVILSIIINIAIIASNGGFDNPARSITIPEE
                     QDLWSAGSKIHDGDEFLYNLKIQNGNKSVDNYLINILFRNSENYWNTEFTISNESTSA
                     KIYSQLSKSNLIMKEKPVKNQKYIDIVESSILQIKDITREPKYLVIGAKWDSINTGIK
                     NIPIKITSKEYLLSKVGELETFVLSYKIKDLTSNIWISKNLPLPVKAEIYNEEDKLNY
                     KYDIIKLNRHIK"
     gene            complement(1844..>2107)
                     /locus_tag="VIL14_05920"
     CDS             complement(1844..>2107)
                     /locus_tag="VIL14_05920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523279.1"
                     /translation="ENIGIVVDKFKKNFSISRELIKSKAIETIPGASVSDAYMYEGKE
                     GVRISLEKGRLELLPGSIHIWSRIDKDVENYVNWILTNVLVKH"
BASE COUNT          772 a          332 c          346 g          657 t
ORIGIN      
        1 gatgacaaaa aataaactat caaaattgca gatgtttatt atttctgtct tggtttctac
       61 cgccttactt gctacgactg accttttatt ttcaaacgct tttgctgagg atgataactg
      121 gtatttggga gaaggagtca ccaaagatat gtatgtaaaa tataggataa gtcaatttga
      181 tactaataat ggtcgagaat ttactatgac aatatatttt aaagatcaag acgataaagg
      241 gaattggata gcaccagttt ttgtagaaga tcaaggaaaa gtgttaaatg gaacatttat
      301 cctaagtcca ttggatttaa ccgccttagg aacatctaaa attcctcctg aaatgagtaa
      361 atatcgaagc gcttatgcag gttcattaca atggctagca gcgtttgttt ctaaacctgg
      421 acaatctttg acttccgcat catggggtaa aatcgcttct atcggtggtt ctgagataaa
      481 accatcaggt catcaagaat taaatattcc agcctttaaa gatcctgtag acaccgtaag
      541 agttgaatat tacaaaggta tagccagtaa tacctatatt aaaaatgaat ttccttatcc
      601 cgtcatggcg aaagcctatg ttgatgtaac gacaggttct gcaccagttc agtatcagta
      661 tatcttgctt gaaactggca aaggtcaacc tgtaatgccc gaaaccacac tatttgaagt
      721 cataccccca ttgaaagaga gaactgctag gggagactac tatgtttcgt tagattggaa
      781 accacctgtg ataactgcag gcaatgaaac tacatttact gtagacatag cagacaaaga
      841 ccaatttcct gctagtcaag ctacctacga cttgataata atggattcaa acaatactat
      901 aataaaagat ttgaaaaacc aggtagcaag tgagggaacg aaatctcata atataacatt
      961 tgaaaagcct ggtatggtaa ctgttaaaat taaagtgact agtgtaaaag gtatagacac
     1021 aggaatcttt actgaacaag tagaatttca aattccagtt aaatagatat taattccctc
     1081 tcttttttta ggtcacatat ttaagaataa tttgttttgt ttgaagaaaa agtttgtcta
     1141 gtaagaaacg tgtaattcta gtctttgggt cattagtgat tctttctatc atcataaata
     1201 ttgctataat tgcttcaaat ggaggatttg ataatcctgc aagatcaatt acaatacctg
     1261 aggaacaaga cctatggtca gctggaagta aaattcatga tggtgacgaa ttcttgtata
     1321 atttgaagat acaaaatgga aacaagagcg tagataacta tttgataaat atactctttc
     1381 gaaatagtga aaattattgg aatactgaat ttactatatc taatgaaagt acatcagcaa
     1441 aaatttattc tcagttatca aaatccaatc tgatcatgaa agagaagcca gtaaaaaatc
     1501 aaaaatatat agatattgtg gaatcatcaa tattacaaat aaaagatatc acgagagagc
     1561 caaaatatct agtaataggt gcaaaatggg attctattaa tactggaata aaaaatatac
     1621 ccatcaaaat tacttccaaa gaatatttac tgtcaaaagt aggagaattg gaaacatttg
     1681 ttttgagtta caaaataaaa gatcttacca gcaatatttg gatttcaaag aatttgccct
     1741 tgcctgtgaa agctgagata tacaatgaag aagacaaatt aaattataaa tatgatataa
     1801 tcaaattaaa tagacacatt aaataagaat agaataattg aatttaatgt ttaactaata
     1861 cattcgtcaa tatccaatta acatagtttt caacatcttt atctatccta ctccaaatat
     1921 gtattgaccc tggcaataac tctaatcgtc ccttctctaa tgatatgcga actccttcct
     1981 ttccttcata catataggca tctgaaactg atgcaccagg tatagtttct atcgcttttg
     2041 attttattag ttctcgtgat atggaaaagt tttttttaaa tttatcaaca acaattccaa
     2101 tattttc
//
LOCUS       DATCMF010000462         1929 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_460548, whole genome shotgun sequence.
ACCESSION   DATCMF010000462 DATCMF010000000
VERSION     DATCMF010000462.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1929)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1929)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1929
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_460548"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1175)
                     /locus_tag="VIL14_05925"
     CDS             complement(<1..1175)
                     /locus_tag="VIL14_05925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate 3-hydroxylase N-terminal
                     domain-containing protein"
                     /protein_id="HEY8523280.1"
                     /translation="MPINNGQEYIASLRNRNLKVYLFGELVKEPVDHPMIRPSINAVA
                     ETYDLANDDPSLASAESSLSGKRVNRFLHIAENATDLVNQNKMQRKLGQLTGTCFQRC
                     VGMDALNSLYSTTFEIDEKYHTTYHQRLKEFIKKIQEENHVIGGAMTDVKGDRSLSPS
                     QQEDPDLFVHITKRDEKGVYITGAKAHQTGCINSHWILVMPTMRLREEDKNYAIVGAV
                     PADAEGITYIYGRQSCDTRSMEEGDLDAGNSKYSGQEAMIIFDNTFIPNELIFMDGEN
                     DYAAMLIERFTCYHRRSYVCKTGLGDVLIGAAASISDYNGVANASHIKDKLVEMTHLN
                     ETIFGTGVASSFQSYKTKAGNYQNDDMLANVCKHNVTRFPYEISRLAQDIAGGLVVT"
     gene            1318..1908
                     /locus_tag="VIL14_05930"
     CDS             1318..1908
                     /locus_tag="VIL14_05930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RlmE family RNA methyltransferase"
                     /protein_id="HEY8523281.1"
                     /translation="MKLADSKKDQFRRLARDQGYRSRSAFKLKQINESYRILNKGHCV
                     VDIGCAPGGWLQIALSEVGHKGKVIGIDVKKIEPLTEAFVIQGNIEDEDIINSILNIS
                     NSNVDVVLSDLSPNVSGNWDLDHARQIDLTRSALKLTDKILKKGGKVVLKVFQGDMLN
                     ELIVELKKEFKKVILTKPNASRQVSSEIYLICIDKL"
BASE COUNT          662 a          312 c          318 g          637 t
ORIGIN      
        1 atggttacga ctaatcctcc agctatgtct tgagctaatc tacttatttc ataaggaaag
       61 cgagtaacat tatgtttaca aacattagca agcatatcat cattctggta attaccagcc
      121 ttagttttat atgattgaaa agaggaagca acaccagtac caaaaattgt ttcattaaga
      181 tgtgtcattt caaccaattt atctttaata tgtgaggcat tagctactcc attataatca
      241 gaaatagatg ctgctgcacc aatgagtaca tcacctagtc ctgttttaca aacgtaactt
      301 cttctatgat aacaagtaaa ccgttctata agcatggcag cataatcatt ctcgccatcc
      361 ataaatataa gctcgtttgg aataaaagta ttatcaaaaa taatcatagc ttcctggccg
      421 gaatatttag aattgcctgc atctagatct ccttcttcca tacttcttgt atcacatgat
      481 tgcctaccgt agatataggt aattccttca gcatctgctg gcaccgctcc tacaattgca
      541 taatttttat cttcttcacg cagcctcata gtgggcatta ctaaaatcca atgggaattg
      601 atacaaccag tttgatgtgc ttttgcacct gtaatataaa cacccttctc atcccgttta
      661 gtgatatgaa caaataaatc tggatcctct tgttgggaag gagaaagact tctatctcct
      721 ttaacatctg tcatagctcc tcctattaca tgattctcct cttgaatttt tttaatgaat
      781 tctttcaacc tttgatgata cgtagtatgg tatttttcat caatttcaaa tgttgtggaa
      841 taaagagaat ttaaagcatc catgcctaca catcgttgaa aacaagtacc tgttaactgt
      901 ccaagcttgc gttgcatttt attttggttt actaaatctg tagcattttc agcaatatgt
      961 aaaaatctgt tcactcgttt accagaaagg gaggattccg cagaggcaag tgagggatca
     1021 tcattagcta aatcataagt ttcggcaaca gcgtttatcg atggtctaat cataggatga
     1081 tcaactggtt ctttgactaa ttctccaaaa agatatacct taagattcct atttcgtaaa
     1141 cttgcaatat actcttgtcc attgttgata ggcatatatt atatataagg tttggatatt
     1201 atttatatat tatcagctat cccaaaaata gtatcgctac taatattaaa gtatttcact
     1261 caggctataa gtaatcttat aatatattta tttttcataa tgtagtttag tgtatctatg
     1321 aaattagcag attcgaaaaa agatcagttc agacgattag caagagatca aggatacaga
     1381 agtaggtctg cctttaaact caaacagatt aatgaatctt atagaatctt gaataaaggt
     1441 cattgcgtag tggatattgg gtgtgctcca ggtggatggc tacaaatagc attatctgag
     1501 gtaggacata aaggaaaggt aataggaata gatgtaaaaa aaattgaacc attaactgag
     1561 gcatttgtta ttcaaggaaa tattgaagat gaagatataa taaattctat tctaaatatt
     1621 tcaaattcaa atgttgatgt tgttttatca gatctgtcac caaatgtaag tggtaattgg
     1681 gacttagacc atgcacgaca aatagattta acaaggagtg ctctaaagtt aactgataaa
     1741 atattaaaga agggaggaaa agtagttctt aaagtttttc aaggtgatat gcttaatgaa
     1801 ctaattgttg aattaaaaaa agaatttaaa aaagtaatat taacaaaacc aaatgcaagt
     1861 agacaagtca gtagtgagat atatttaatt tgtatagata aattataaac caatagaaat
     1921 ttagttata
//
LOCUS       DATCMF010000463         2254 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_327511, whole genome shotgun sequence.
ACCESSION   DATCMF010000463 DATCMF010000000
VERSION     DATCMF010000463.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2254)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2254)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2254
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_327511"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(279..929)
                     /locus_tag="VIL14_05935"
     CDS             complement(279..929)
                     /locus_tag="VIL14_05935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523282.1"
                     /translation="MVQICPFCENGVEITEITSYPDYIRRFFSCGHMAKPTQDDNNTD
                     SKNTLNHTTVDPAAGEESVDISPIAAIVISRLKQSKKVQIKEKTFNRKPCLQFSAESL
                     RLVITNEIMNVHLLETKFTENISAANILESISALTQELRTASTIHDRERKKMFSLFEK
                     VNTILASKPARTLLRRKWTFTVATPYILKIIEVLVGSSTGNFDSSVNNKDNKKTFV"
     gene            complement(1337..>2254)
                     /locus_tag="VIL14_05940"
     CDS             complement(1337..>2254)
                     /locus_tag="VIL14_05940"
                     /EC_number="2.4.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-guanine transglycosylase"
                     /protein_id="HEY8523283.1"
                     /translation="VPTKPIHLFGAGHPLTIPLVVALGCDMFDSASYMLYAKDNRYMH
                     ANGTARLEDLSYLPCHCPVCTKYNSAQELLLQDKERRITEIAKHNLYILKTELNTVKQ
                     AIVDGRLWEYVIQKARAHPKLMEAIEILKNFELLGQGTSLFKQRAVFFYDPLDQYRPE
                     AVNFRKMVSEFRSKKNYSGGRKLILYPESNIHPFYATYDFRKLAKNFPDAQICTYNQF
                     LGIIPAEISDIFPAAHNLAAKKLTTYQTNDYPSFVASLKEFLTENNFNQIIIVADQFI
                     KSIITNDRTLLKNLDAKVIDYGKDVASII"
BASE COUNT          673 a          413 c          399 g          769 t
ORIGIN      
        1 tgcgtaaata tgtatttgaa aaaaggttaa actcaattat ggttttataa cttgttttgg
       61 tcagagagat ggacataata ttgaaataaa agaggaaaca aatgaaccct ctagtatcta
      121 ggttacatat atattgcaag cggaactttt cacaaacttc tgagaagggt ttactcatga
      181 ataatgccct caggcattaa taagaaatat gagccttctt atagaagctc gtcaattctt
      241 tggcgatttc atcatctagt tttataacat ttgatttatc atacaaatgt tttcttattg
      301 tctttgttat tgacactgct atcaaaattg ccagtgctgc tgcctaccaa tacttctata
      361 atcttcaaaa tataaggcgt agcaactgta aaggtccatt tccttcgaag gagggttctt
      421 gcgggtttag atgcaagaat ggtatttact ttctcaaaca aggaaaacat tttctttctt
      481 tctcgatcat ggattgtaga ggctgtcctt aattcttgcg ttagcgctga aatactctct
      541 aagatatttg cagctgatat attttctgtg aatttagttt caagaagatg aacattcata
      601 atctcattag ttataactag cctgagtgat tcggcagaaa actgcagaca gggttttcga
      661 ttaaatgttt tttcttttat ttgaaccttt tttgactgct tcagtcttga tattactatg
      721 gctgcgatag gagagatatc gacactttcc tccccagccg caggatcaac ggttgtatga
      781 ttcaaggtat ttttgctgtc agtattatta tcgtcttgag tgggtttagc catatgtcca
      841 caactaaaaa atcgtcttat ataatccggg tatgatgtta tttcagttat ctccacacca
      901 ttttcacaaa aagggcaaat ttgaaccata ttgacaatct cacctctata ttccaaacct
      961 aaatggtagt aattcttctt ttgatgcaat ggaccattaa taatagcttc atattactct
     1021 tttgttacat tttatcggca gcaatcaccg cttctagctg atgactaaga tgatgaaaca
     1081 ctcttctata ttgatgtcaa aactacgctt tcgacaatct agtcatgtat atgttaaggc
     1141 aaagacgcac ctttacctat ttatctccaa atactcccat atttatctag tcacaatttg
     1201 taagcgacaa ttgtgaccgt ccaggcatta ttgagagact gaggaaatga tcgtaaatat
     1261 ccaatcttga tctgccaagc taattcaatc tgcacatcat ttaatcaaag acggaagtca
     1321 aagaagaccg aggagcctat attatagaag ctacgtcctt accataatcg ataacttttg
     1381 cgtctaagtt ctttagcaat gttctgtcat tagttattat gctcttgatg aattgatctg
     1441 caactattat aatttgatta aagttattct ctgtcaggaa ttcctttaaa gacgccacaa
     1501 agctcgggta atcgtttgtt tgataagttg tcaatttttt agcggccaaa ttatgtgcag
     1561 ccggaaatat atcagatatt tctgccggaa tgatcccaag aaattggtta taagtacaaa
     1621 tttgagcatc tggaaaattt ttagcgagtt tcctaaaatc atatgtagca tagaatggat
     1681 gaatgttaga ttctggatac aaaatgagtt ttcttccacc gctatagttt ttctttgatc
     1741 taaattctga aaccattttt ctaaagttaa cggcttctgg cctatattga tctaaaggat
     1801 cataaaagaa aacggccctt tgtttgaaga gagacgtccc ttggcccaat aactcaaagt
     1861 tcttcaaaat ctctatggct tccataagct ttgggtgcgc acgtgctttc tggatgacat
     1921 actcccacaa tcttccatcg acgatcgcct gcttaactgt attaagttct gttttcaata
     1981 tatacaaatt atgttttgct atttctgtga ttcttctttc tttatcttgt aggagtaatt
     2041 cctgtgccga gttgtatttg gtacaaactg ggcagtgaca aggcaaatat gacaagtctt
     2101 caagtctagc ggtcccgttc gcgtgcatat atcgattgtc tttagcatac aacatataag
     2161 atgcagaatc aaacatgtca cagcccaatg caactactaa aggaattgtg agtggatgtc
     2221 cagccccaaa tagatgaatt ggtttggtgg gaac
//
LOCUS       DATCMF010000464         3290 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_327928, whole genome shotgun sequence.
ACCESSION   DATCMF010000464 DATCMF010000000
VERSION     DATCMF010000464.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3290)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3290)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3290
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_327928"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..201
                     /locus_tag="VIL14_05945"
     CDS             <1..201
                     /locus_tag="VIL14_05945"
                     /inference="COORDINATES: protein motif:HMM:NF011470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KEOPS complex subunit Pcc1"
                     /protein_id="HEY8523284.1"
                     /translation="VKERDAILDTLLPDNINFPNELSMKMSVNDKSLMINTSSTKIDT
                     MINTIDEILHHISLAKKVIKYD"
     gene            194..1465
                     /gene="serS"
                     /locus_tag="VIL14_05950"
     CDS             194..1465
                     /gene="serS"
                     /locus_tag="VIL14_05950"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004828 - serine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006434 - seryl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HEY8523285.1"
                     /translation="MIDPKNLRDNLDKIRDMLDKRNLKFPLNDLINLDKKRRELIANL
                     QLERHKKNNIANIIAVKKKKNEDISTYIKQMEDTGKRIKLLEENISCNNSKFYSLIML
                     LPNYVHDSVPIGKDQTNNVIIRTHGTIKKFDSTIRNHIDIGESLNLIDIEKAAKISGS
                     RFYFLKNDLVKLNHAIISFALDFISEKGYTLLQPPYMIKKNAMEGAVILEDFKDVIYK
                     IQDEDLFLIGTSEHAMAAMHMDQILEGSQLPIRYAGFSPCFRKEAGAHGKDMKGIFRV
                     HHFDKVEQFVYSRPENSWQEHERMLNIAEEFYKKLGIPYRVVLLCSADLGKISAKTYD
                     IEAWIPAQKNYREIVSCSNCIDYQARRLRIRFRDKSNEETKLVYTLNSTLVAIQRTLV
                     AILENYQTTNGVMIPEILQSYMGGIQEIKSK"
     gene            complement(1571..2041)
                     /locus_tag="VIL14_05955"
     CDS             complement(1571..2041)
                     /locus_tag="VIL14_05955"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HEY8523286.1"
                     /translation="MIEKVIMINNTDNYHCIFCSIINGTSEGITVYYNNHFLVLMDKY
                     PISNGHTLVIPKKHYNNLLSMPQEEVGKLYSLVSIIAKAVVSAVSADGFNIGQNNGKS
                     ANQIIPHVHVHIIPRFKNDNSYGKWPTRYIAKEDELYEFSKKIKNQLNVLSILD"
     gene            2147..2335
                     /locus_tag="VIL14_05960"
     CDS             2147..2335
                     /locus_tag="VIL14_05960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523287.1"
                     /translation="MAETIEIENFNVLFSFDCPKCEYHNEEISVADLTNGSAECGMCE
                     TIFKFEGIDSLKITATIE"
     gene            2410..>3290
                     /locus_tag="VIL14_05965"
     CDS             2410..>3290
                     /locus_tag="VIL14_05965"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0016836 - hydro-lyase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HEY8523288.1"
                     /translation="MELPSRKTLEGPSRAPHRAMYKAMGLKDKDLDKPIIGISSTCNE
                     ATPCNIHLGKLAQFAKKGVSDVNCTPREFTAIAVSDGIAMGHEGMKASLVSREIIADS
                     IEIMMRAHQYDGLVGISGCDKSLPGTLIGMARLNLPSIFVYGGTIMPGNWHNKDVTIQ
                     DVYEAVGSFDAGKISMEELIQLENVACPSAGSCGGMYTANTMASVSEALGMSLPGSAS
                     PPAESEKRNEMCYETGKTIATLIENDITPKEVMTFEAFENAITIANALGGSTNVVLHL
                     LAIAKEIGVKLILKDFER"
BASE COUNT         1261 a          430 c          551 g         1048 t
ORIGIN      
        1 gtaaaggaaa gagatgcaat cctggatact ttattgcctg ataatatcaa ttttcccaat
       61 gaactttcta tgaaaatgtc agtaaatgat aaatctttga tgatcaatac atcttctact
      121 aaaattgata ctatgataaa tacgatcgat gaaatactac atcatatttc tcttgctaaa
      181 aaagtgataa agtatgattg atccaaaaaa tctaagagac aatctagaca aaattagaga
      241 tatgttagat aaaagaaatt taaaatttcc tttaaatgat ttaataaacc tagataaaaa
      301 acgtcgagaa ctaatagcaa atctacaatt agagagacac aaaaaaaata atattgctaa
      361 tatcatagct gtaaaaaaaa agaaaaatga agatatttcg acttatatta agcaaatgga
      421 agatactggg aagagaatta aattactgga agaaaatatc tcttgtaata attcaaaatt
      481 ttatagtttg ataatgttgc ttccaaatta tgtacatgat tctgttccaa ttggaaaaga
      541 ccaaacaaat aatgtcataa ttagaactca tggaacaatc aaaaaatttg attctacaat
      601 aaggaaccat attgacattg gagaaagcct aaacttaatt gatattgaaa aagctgcaaa
      661 gatatcagga tcacgatttt attttttaaa aaatgattta gtaaaactaa atcatgcaat
      721 aataagtttc gctcttgatt ttatttctga aaaaggatat acgttattac aaccaccata
      781 tatgatcaaa aaaaatgcaa tggaaggagc agtaatttta gaagatttta aagatgtaat
      841 atataaaatt caagatgaag atctctttct gattggaacg tctgaacatg ctatggctgc
      901 aatgcacatg gatcaaatat tagaaggctc ccaattacct ataagatatg caggatttag
      961 tccatgtttt agaaaagaag caggtgccca tggaaaagat atgaaaggga ttttcagggt
     1021 tcaccatttt gataaggtag aacaatttgt ctattctaga ccagaaaatt cttggcaaga
     1081 acatgaaaga atgctaaaca ttgcagaaga attttataaa aaacttggaa taccatatag
     1141 agtagtccta ttatgttctg ctgatttagg caaaatatca gctaagacat atgatattga
     1201 agcatggata ccagcacaga aaaattatcg agagatagtt tcatgttcaa attgcattga
     1261 ttatcaggct agaagattaa gaataaggtt tagagataaa tcaaatgaag agactaaatt
     1321 agtctataca ttaaatagca cacttgtagc aattcaaaga acgctagtag caattttaga
     1381 aaactatcaa acaactaatg gagtaatgat tccagagatt ttgcaaagct atatgggagg
     1441 aattcaagaa attaaatcaa aatagacttc tatgtatata tttatttgag ataaagaaat
     1501 tacaataata aagacaatta aattatctta tgaagataaa taaaaaccaa gaataataag
     1561 ttatatttaa ctagtctaga atagacaaaa catttaattg gttttttatc tttttagaga
     1621 actcatataa ttcgtcttct tttgcaatat atctggtagg ccatttccca taagaattat
     1681 catttttaaa tctcggaata atatgaacat gtacatgagg aataatctga tttgctgatt
     1741 ttccattatt ttgtcctata ttaaatccat ctgcagaaac tgctgaaact actgctttag
     1801 ctataatact aacaagagag tataatttcc ctacctcttc ttgaggcatt gaaagtaaat
     1861 tattataatg tttctttgga attaccagtg tatgtccatt actaattgga tatttatcca
     1921 tcaatactaa aaaatggttg ttataataaa ccgttattcc ttcactagtt ccattaatta
     1981 ttgaacagaa aatacaatga tagttatcag tattgttaat cataatgact ttttctatca
     2041 ttactaatat tacttttatt tcttggtatt atgaatacag atttacataa gtataaaaaa
     2101 ttatagccaa ttttaaatat aactatttcc tcctatctct tacataatgg cagaaacgat
     2161 tgagatagag aattttaatg tacttttttc atttgactgt cctaaatgcg aataccataa
     2221 tgaggaaata tctgttgctg atttgactaa tggaagcgca gagtgtggaa tgtgtgagac
     2281 tatctttaag tttgaaggaa ttgattcatt aaaaattaca gctactatag aataaacaat
     2341 atttaatctc tatcttatat aatttttaag gaaagactat taaaataatg cttttgtatt
     2401 cttatttaaa tggaattacc tagtagaaaa actcttgaag gaccatctag ggcacctcac
     2461 agagcaatgt ataaagcaat gggattaaaa gacaaggatt tggataaacc tattattggt
     2521 atatcttcta cttgcaatga agccacacca tgtaatatac atttaggtaa acttgcacaa
     2581 tttgcaaaga agggagtatc agatgtgaat tgtactccaa gagagtttac tgcgatagca
     2641 gtttctgatg gtatagctat gggacacgaa ggtatgaaag catctttagt tagtagagaa
     2701 ataatagcag attcgataga aattatgatg agagcacatc aatatgatgg tttagtggga
     2761 atttcaggtt gtgataagag tttgccaggc acattaattg gtatggctcg attaaattta
     2821 ccttcaattt ttgtttatgg agggacaata atgcctggaa attggcacaa taaggatgta
     2881 acaatacaag atgtttatga ggctgttggt tcgtttgacg caggcaaaat cagtatggaa
     2941 gaattaattc aattagaaaa tgttgcttgt ccatctgctg gctcttgtgg tggaatgtat
     3001 actgcaaata ctatggcatc tgttagtgaa gctttaggta tgtcgttgcc tggtagtgct
     3061 tctcctccag cagagagcga aaagagaaat gaaatgtgtt atgaaacagg aaagactatt
     3121 gcaactctta tagaaaatga tattacccca aaagaagtaa tgactttcga agcatttgaa
     3181 aatgcaataa ctattgcaaa tgcattagga ggatcgacaa atgtagtatt acatctatta
     3241 gcaatagcta aagaaatagg agtaaaatta attttaaagg atttcgagcg
//
LOCUS       DATCMF010000465         1660 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_593222, whole genome shotgun sequence.
ACCESSION   DATCMF010000465 DATCMF010000000
VERSION     DATCMF010000465.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1660)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1660)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1660
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_593222"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            79..1074
                     /locus_tag="VIL14_05970"
     CDS             79..1074
                     /locus_tag="VIL14_05970"
                     /inference="COORDINATES: protein motif:HMM:NF012958.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase-fold protein"
                     /protein_id="HEY8523289.1"
                     /translation="MTVTEGKIIIHNFESSVLKSNPLKDPYNREIIVYVPHDYSPSHS
                     KGFPAAIGLSGFSGNGRTFFNLDPLGENIEQRMNRLISEKKCGSMILVIPNCFTKFGG
                     NQYINSTATGRYEDYIVNEILPFMQNNYNISSFGIWGKSSGGYGSLVLGMRYPELFKA
                     IACHSGDAAFEYCYLPDFPNAYQSFKQTEGIQNWFIQFWNKSNKKQKSDFIALNILCM
                     AAHYSPDPASQLGVRMPFDLETGELNEDTWKMWKKWDPIKMINQYQNNLKKLSLLYID
                     CGSKDEFNLHIGARILHQKLENMNLIHHYEEFDGGHSNTSFRYDISFPLIYSSLS"
     gene            1239..1580
                     /locus_tag="VIL14_05975"
     CDS             1239..1580
                     /locus_tag="VIL14_05975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523290.1"
                     /translation="MFSSDCIQKMNRINSLIILASITLGAFLVLNTYPLMKVLALEER
                     SEHYYPPAQDLRPGQDYPPAQDYPPAQDYPPENGYNSDVQYNQDKYGGFSDQYESGYY
                     EDHYGKPYKIE"
BASE COUNT          611 a          247 c          246 g          556 t
ORIGIN      
        1 tatatttcca aagcagtttt aatttataat ttaatttaat ttgtatatta tatattaaga
       61 caaattataa tatcaacaat gactgttaca gagggaaaaa taattattca taattttgaa
      121 agttcagtat taaaatctaa tcctttgaag gatccatata atagagaaat catagtatat
      181 gttcctcatg attattcacc aagtcactcc aaaggatttc cagcagctat tggactttca
      241 ggatttagtg gtaatggtag aacattcttc aatttagatc ctcttggtga aaacattgag
      301 caaagaatga atagattaat ttccgaaaaa aaatgtggtt ctatgatttt agttattcca
      361 aactgtttta caaaatttgg aggaaatcag tatataaatt ctacagctac aggaagatat
      421 gaagactata tcgttaatga aatactccca ttcatgcaaa ataattacaa tatttcttca
      481 tttggaatat ggggtaaatc ttcaggtgga tatggttcac ttgttttagg aatgcgttac
      541 cctgaattat tcaaggccat tgcttgccat tcaggagacg ccgcgtttga atattgttat
      601 ttaccagatt ttccaaacgc ttatcaaagt tttaagcaaa cagaaggaat ccaaaactgg
      661 tttattcaat tctggaataa atccaataaa aaacaaaaaa gtgattttat agccttaaac
      721 attttatgta tggcagctca ttactctcca gacccggcat cacaattagg tgttagaatg
      781 ccttttgatc ttgagactgg cgaactaaat gaagacacgt ggaaaatgtg gaagaaatgg
      841 gatccaatta aaatgataaa ccaatatcaa aataacctca aaaaattgag tctattgtac
      901 atagattgcg gaagcaagga cgaattcaac cttcacattg gtgcaagaat acttcaccaa
      961 aaacttgaaa atatgaatct tatacatcat tatgaagaat ttgatggtgg tcactctaat
     1021 actagctttc gatatgacat ttcttttcca ttgatatatt catcactttc gtagaatttt
     1081 atgtcaccta ttatactata aattttactt aactaaactt taataagaat aagtattaat
     1141 aatatattac ttgaatacta ataatatgcc ttaataacaa tatgtattat atttacctat
     1201 acttattata taatgtcttt gaattcactt aatatgcaat gttttcatca gattgtatac
     1261 aaaaaatgaa tagaataaat tcactaataa tattagcatc gataactttg ggagcatttt
     1321 tggtgttgaa cacctatcct ttgatgaagg tgttagcgtt agaagaaagg tcagaacatt
     1381 attatccacc agcacaagat ttacgaccag gacaagatta tccaccagca caagattatc
     1441 caccagcaca agattatcca ccagaaaatg gctataattc agatgtgcaa tataatcaag
     1501 ataagtatgg aggattttca gaccaatacg aaagtggata ttatgaagat cactatggta
     1561 aaccatataa aatagaataa tatctttctt ttatttcaat tttggaatga gatcaaattt
     1621 gtgactatat attttatcct taaattaata tctgcttatt
//
LOCUS       DATCMF010000466         2049 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_461530, whole genome shotgun sequence.
ACCESSION   DATCMF010000466 DATCMF010000000
VERSION     DATCMF010000466.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2049)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2049)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2049
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_461530"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            336..1073
                     /locus_tag="VIL14_05980"
     CDS             336..1073
                     /locus_tag="VIL14_05980"
                     /inference="COORDINATES: protein motif:HMM:NF021287.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAC2 family protein"
                     /protein_id="HEY8523291.1"
                     /translation="MLGVKIHYKPKFDKKPILIAALPDMGNVAGLCLNFLINKIDTKI
                     FAEIYSFWPPSVTYKKGIINYLQSSYKFYENSQYNIIFFTGDFNPTDPRRLYELCYEV
                     LKIAEMFNVELLYSLGASLKRINTIEKLVYAGVNKPEMVNILNELNLQILEDEGQITG
                     FNGLILGIAQEFNLDGICLLGEIDNPNVIQPKTSQEILKVLLKIINFPSIDLSELEEE
                     EKRKKFMEKQMNYFNKAVNQNELPGIT"
     gene            complement(1104..1832)
                     /gene="cbiE"
                     /locus_tag="VIL14_05985"
     CDS             complement(1104..1832)
                     /gene="cbiE"
                     /locus_tag="VIL14_05985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046025 - precorrin-6Y
                     C5,15-methyltransferase (decarboxylating) activity
                     [Evidence IEA];
                     GO_process: GO:0046140 - corrin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="precorrin-6y C5,15-methyltransferase
                     (decarboxylating) subunit CbiE"
                     /protein_id="HEY8523292.1"
                     /translation="MPKKLFVIGVGPGDPNYITQIAKEKILISKYIIGYRYTLRTIEN
                     LIDKEKQQIYEITMKNQESAYQYVYGNMQDNEYCTVPFTGDVSFSESEVVDRLLEIFG
                     NENVEIIPGISSIQVASSKSRVPLDKAFVVTFHVTGDIQQKQIELIKSVLDKKSVILL
                     PRPWPNDLSKNFMPSDIALFLKNNGVNTREIDVWIFEYLTDKEKETIFRGKMIDLENK
                     TFSDLSVMVIDQNKKETYLNFNLL"
BASE COUNT          804 a          253 c          267 g          725 t
ORIGIN      
        1 ttgcagcatt cattgaatgg aatcttataa aacaaattat agaaattcct aaataattta
       61 tattatatat ataaatatta ttaaagtaat tatgataaga gatttaagga tatcaatcga
      121 gtgacttaat tcagaagaag catatacgaa atttataata aatttctaca attgtaatag
      181 aattttttga atattcatcc ggtagaatag gaagaatgat tacaaaaata tgaaatggaa
      241 tatgctacta ataaggtgat ttagattaat tattataata tttacttttt agataattat
      301 aaattcaaaa taaaattaat ataatataaa tagaattgtt aggagtaaaa attcattata
      361 aaccaaaatt tgacaaaaag ccaattctta tagcagcatt acctgatatg ggaaatgtag
      421 caggattatg cttaaatttc ttaataaata aaatagatac gaaaattttc gctgaaatat
      481 attcattttg gccaccatct gtaacatata aaaaaggaat tataaattat ttgcaatcaa
      541 gctataaatt ttatgaaaat tcacaatata atataatatt ttttactgga gattttaatc
      601 ctacagatcc aagaagatta tatgaattat gttatgaagt tttaaaaatt gccgaaatgt
      661 ttaatgttga acttttatac tctcttggtg cctctctaaa gcgcattaat acaatagaaa
      721 aattagtcta tgctggagta aataaacctg aaatggtcaa tattttaaat gagttaaatt
      781 tgcagatact agaagacgaa ggacagataa cagggtttaa tggattaatt ttaggaatag
      841 cccaagaatt taatttagat ggaatctgtc ttttaggaga aattgataat ccaaatgtta
      901 ttcaacctaa aacttctcaa gaaattctaa aagttttatt aaaaattatt aattttccat
      961 ctattgattt atcggaattg gaggaagaag aaaaacgaaa gaagtttatg gagaaacaaa
     1021 tgaattattt caataaagca gtaaatcaaa atgaattacc aggaataaca taaatataat
     1081 cataaacatt tatacaaata aaattaaagt aagttaaaat tcaaatatgt ttccttttta
     1141 ttttgatcaa taaccattac cgacagatca ctaaatgtct tattttctaa atcaatcatt
     1201 tttcctctaa aaatagtttc tttttcttta tccgtcaagt attcaaaaat ccagacatca
     1261 atttctctag tattgactcc attatttttc aaaaataaag caatatcgga aggcataaaa
     1321 ttttttgata aatcatttgg ccaaggacgt ggcaataaaa taacgctctt cttatctaat
     1381 actgatttga tcaattctat ctgtttttgt tgaatatccc cagttacatg aaatgtaact
     1441 acaaaggcct tatccagtgg aacccttgat tttgaagatg caacttgaat agaactgatt
     1501 cctggaataa tttcaacatt ttcatttcca aaaatctcta ataaacgatc aacaacctct
     1561 gattcagaaa aactaacgtc tcctgtaaat ggaacagtac aatattcatt atcctgcata
     1621 ttgccatata cgtattgata tgctgattcc tggtttttca tagtaatttc ataaatttgt
     1681 tgcttttctt tatctatgag attttcaata gttcttagtg tatatcgata acctatgata
     1741 tatttagata taaggatttt ttctttagca atttgagtga tataattagg atctccaggt
     1801 cctacaccaa taacaaacaa tttctttggc atttgaaatt gtattaaaag ctataataga
     1861 taataataat attcttttta taaaagaatt agatctatat ttaaaataag atgatttgtt
     1921 ggtaaaaaga aactatctga ctaaatgata taactatttt gacatgctta tcattatatg
     1981 gaattattaa cggacttaca tgagcgaact taagctcgaa tttgtaggta aacaagttaa
     2041 agatatgta
//
LOCUS       DATCMF010000467         2696 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_461928, whole genome shotgun sequence.
ACCESSION   DATCMF010000467 DATCMF010000000
VERSION     DATCMF010000467.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2696)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2696)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2696
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_461928"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            228..614
                     /locus_tag="VIL14_05990"
     CDS             228..614
                     /locus_tag="VIL14_05990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523293.1"
                     /translation="MAENLSKLNAQYKTNCKKILELSSKIRYVGVTNKFGRTIAGQLR
                     IGLTPFLKTEEMRNELFVHSMIYNIRKNYEKSIGETEFIFISNKKVDIISFYIDELVY
                     YITIDKNIDKNELYSLNQQIRAITKL"
     gene            complement(640..1095)
                     /locus_tag="VIL14_05995"
     CDS             complement(640..1095)
                     /locus_tag="VIL14_05995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15e"
                     /protein_id="HEY8523294.1"
                     /translation="MYRQLASTWTKMWKTNSEELKSRAVGWRKELSIHRINKPSRLDR
                     ARRLGYKAKQGIVVIRARVGRGGMRKQRPVAGRRPKHSGVIHIKQATNMRLVAERRVN
                     EKYPNMEIIGSYFLYKDGKHSWYEVILADPSHPSIYKDKEMRGKLKSLT"
     gene            complement(1203..1673)
                     /locus_tag="VIL14_06000"
     CDS             complement(1203..1673)
                     /locus_tag="VIL14_06000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HEY8523295.1"
                     /translation="MISIEEKLYALGFELPSPPKSSGSYIPLVEVNGLIFVSGQIPLD
                     TSSNPVTIKYQGKIGKDTTLEKGQNAAILCTLNALALLKEHLGSLEKIKKIVKLSAYV
                     NCIEAFSDHPNVVNSASNLLERLFGEKGKHSRIAIGVESLPFGSTIEIDFLVSI"
     gene            1751..2131
                     /locus_tag="VIL14_06005"
     CDS             1751..2131
                     /locus_tag="VIL14_06005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523296.1"
                     /translation="MIKRVLLSLAIASVITYFVYLAMMDSLNRSSINYLSISNDTAVS
                     IIFKHENLSSHHLNNINSKYVYIKGNGEIYEAKKDTNFIGNYVGKTSPTITTGNHFGW
                     QINLPALNKTYYVDHLRGEIISTD"
     gene            2209..>2696
                     /locus_tag="VIL14_06010"
     CDS             2209..>2696
                     /locus_tag="VIL14_06010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEY8523297.1"
                     /translation="MQITGNILVCDPISKIGITILKKAGLNVVDKPSITNSELLSEVE
                     NYDVIVVRSRTKITNEVISNAKKAKIIARVGVGLDNIDVESAQQNNIEVINSPESAIN
                     AVAELVIGLMLSLARNLPLADSEMKKGNWMKKELNGIELRGKYLGIVGVGNIGRNLAR
                     IA"
BASE COUNT          962 a          421 c          380 g          933 t
ORIGIN      
        1 aacataatca agaaatcttt tcatcttttt ccttcaaaag aagaatacat atcaagattc
       61 agtaattata tttctactaa taaagtaagt ctaaaagagt tagatgccat acgagcactt
      121 caatatatat cctcattaga aaaaatataa attgttaaat ttaaatttta tctcacaagc
      181 attccctttt cataaactat tttatatcgt ctatcgtaaa gtatagcatg gctgaaaatc
      241 tctccaaatt aaatgcgcaa tataaaacca actgtaaaaa aatacttgaa ctgtcatcta
      301 aaattcgtta tgtgggtgta acaaacaaat ttggtagaac aatagcaggc caacttagaa
      361 ttggcttaac ccctttttta aaaacagaag aaatgaggaa cgaattgttt gttcattcta
      421 tgatttataa tatccgaaaa aactatgaaa aatccatagg agaaactgaa ttcatattta
      481 tttctaataa aaaagtagat attattagtt tttatattga tgaattagtt tattatatta
      541 ctatagacaa gaacatagac aaaaatgaat tatattcctt gaaccaacaa attagagcga
      601 tcacaaaatt gtgatttttt taaatatttt ttgttgaaat taagttaaag attttaattt
      661 tcctcgcatt tccttatctt tataaatgga cggatgactt ggatctgcta atatcacttc
      721 ataccatgaa tgtttcccat ctttataaag aaaataagaa ccaattattt ccatatttgg
      781 atatttttca ttaactcttc gttctgctac caaccgcatg tttgttgctt gtttaatatg
      841 aataactcca ctatgcttag gtcttctacc agctactggc cgctgctttc tcattcctcc
      901 tcttcctact cgtgctctaa taactacaat accctgtttg gctttatatc caagtctcct
      961 tgctctatct aatctactag gtttatttat tctatgaatt gatagctctt ttctccaacc
     1021 aacagctctc gattttaatt cctcactatt tgttttccac attttagtcc aggtcgacgc
     1081 taactgtcta tacatgttaa aatacaatca aactctttta aaaggctata taagaatttc
     1141 ttttattgaa gggatatcaa ttcttttttt atatatcaaa tacataatta cggaaaagaa
     1201 tgttaaattg aaactagaaa atctatttct atggtgcttc cgaatggaag actttctact
     1261 ccaatagcga tccgtgaatg ttttcctttt tccccaaata gcctttccaa aaggtttgat
     1321 gcagaattaa caacatttgg atgatctgaa aaagcctcaa tacagttcac ataagcagat
     1381 aacttgacta tttttttgat cttctcaagg cttcccaaat gttcttttaa taatgctagg
     1441 gcattaagag tacaaagtat agctgcgttt tggccttttt caagtgttgt atcttttcca
     1501 attttccctt gatattttat tgttacggga tttgaacttg tatctaaagg aatttgtcca
     1561 gaaacaaaga ttagaccatt tacttcaacc aagggaatat aagaaccaga agattttgga
     1621 ggtgagggta attcgaatcc taatgcatat aatttttctt caatgcttat caatagtgaa
     1681 atatgaaaaa gttgtattat taaatgtatt aaacaattaa aataaattaa taaaaataat
     1741 aatttactgc atgataaagc gagttctatt atcattagct atagcatctg taattactta
     1801 tttcgtttat ctagctatga tggattcttt gaatagatct tcaattaatt atctctctat
     1861 ctctaacgac actgctgttt ccattatttt taaacatgaa aacttatcgt ctcaccatct
     1921 caataacata aattctaaat acgtctatat aaaaggaaat ggtgaaatat atgaagcaaa
     1981 aaaggatact aacttcatag gcaattatgt cggaaaaact tctcccacaa ttactactgg
     2041 aaatcatttt ggatggcaaa taaatttgcc tgcattaaat aaaacatatt atgttgatca
     2101 tttaagagga gaaattatct ccaccgatta aaaccgtagt tttatttact tagattctaa
     2161 attctaaata aagtaataat tatatttgta tctcaaaaaa ttttatccat gcaaataact
     2221 ggaaatattt tagtctgtga cccaatatcc aaaataggaa taacaatttt aaaaaaagct
     2281 ggccttaatg ttgtcgataa accatcgata actaactctg aattattatc agaagttgaa
     2341 aactatgatg taattgtagt ccgaagtagg accaaaatca ctaatgaagt tatatcaaat
     2401 gcaaaaaaag ctaagataat tgctcgagtt ggagtaggac ttgacaatat agatgttgaa
     2461 tcagctcaac aaaataatat tgaagtaata aactcacctg aatctgcaat taatgccgtt
     2521 gctgaattag ttattggatt gatgctttca ttagcgagaa atttaccttt agccgatagt
     2581 gaaatgaaga aaggaaattg gatgaaaaag gaactgaatg gaattgaatt aagaggaaaa
     2641 tatttaggaa ttgtaggggt tggaaacatc ggtaggaact tggcaagaat tgctag
//
LOCUS       DATCMF010000468         2486 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_328813, whole genome shotgun sequence.
ACCESSION   DATCMF010000468 DATCMF010000000
VERSION     DATCMF010000468.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2486)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2486)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2486
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_328813"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..668)
                     /locus_tag="VIL14_06015"
     CDS             complement(<1..668)
                     /locus_tag="VIL14_06015"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HEY8523298.1"
                     /translation="MINKNRIFFILSLSLSLLLFSFCNIYAQQNQPLVAENITLFDPK
                     LKIELVASGLDFPTTMAFLGPDDFLILEKNTGNVKRFVNGTVLEKPLLHVKPSIKDER
                     GLLGIAISEKKNFYDNPFIIENKNLTHNVFLYYIECNEKNLNCENRIYKYDLDNKNNV
                     LINPKFLVGVPSFPDASHIGGIIDIGPDENLYVTVGNFQNTIPIKLYKTKTQNYEDGE
                     PVDG"
     gene            882..2195
                     /locus_tag="VIL14_06020"
     CDS             882..2195
                     /locus_tag="VIL14_06020"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEY8523299.1"
                     /translation="MKISISFSKPSMNVSQFMLFLTISFIILTIFCINNNSFAIENQT
                     IKNENEFNIIATADIGCSIRAQENIKNIEKLNPELFLVAGDLSYKKTPDCWFNMTKSL
                     DSKTKIAIGNHDDYEEEGAKGERLERSLLNHYNLNKPYYSFDYQNVHVLVLDTQLELS
                     VDTLESTAIINETTTTTNTIDDNKGKKDNKDANDKKKEPLLERFPLVDIADLLKQNSI
                     DVEIPPLDKIIESNAKVPALKVDNEQYQFVLEDLEKTSQNKNIDWIFVMFHKPMYSPL
                     SKQFEEYIIRDKYQPIFDKYGVDLVIQGHNHIYSRTLPLSLNKLDISQPIVDKNSRST
                     SNNNIFTNPQGTIFLVVGVGGEELHRIESVPYYVANHYNKGFGFADIKIDGKRLDVKF
                     YDINLNCQLKITQKKEREVIDPQSCLPPTPGNDKLKVIDYFTIIK"
     gene            2213..>2486
                     /locus_tag="VIL14_06025"
     CDS             2213..>2486
                     /locus_tag="VIL14_06025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523300.1"
                     /translation="MKSKYSNFILIFLSLSITFSFIQSKEIDAQNLKNGKIDLCCTWG
                     SELKDNVLTYNIEKSSKDLERITESAFSTWKNNLYNIHFKNVKDNDV"
BASE COUNT          943 a          354 c          345 g          844 t
ORIGIN      
        1 cttccatcca caggctcgcc atcctcataa ttttgagtct tagttttgta cagcttaata
       61 ggaatagtat tctggaaatt tcctacagta acataaagat tttcatcagg acctatatct
      121 attattccac caatatgaga agcatctgga aatgaaggaa caccaaccaa gaattttgga
      181 tttataagga cgttattttt attatccaaa tcatacttat aaatccggtt ctcacaattg
      241 agatttttct cattacattc aatatagtaa agaaagacgt tatgtgttag gtttttattt
      301 tctataataa acgggttatc ataaaaattt ttcttttcac ttatagcaat tcctagcaag
      361 cctcgttcat cttttatact tggcttaaca tgtaaaagtg gtttttcaag cacagttcca
      421 tttacaaatc tttttacatt tccagtattt ttttccagga ttaaaaagtc atctggaccc
      481 aaaaatgcca ttgtagtagg aaaatcaagt ccggatgcta ctaactcaat tttcaatttg
      541 ggatcaaaaa gagttatatt ttcagcaacc aaaggttgat tttgttgtgc ataaatatta
      601 caaaaactaa aaagtaaaag tgataaagat aaagataata taaaaaagat cctattttta
      661 tttatcattt attctataaa taaagaacgt gatttcaata tatattattt acaaatcaaa
      721 aatagtagta tttttccaaa taaaaatata aaaaatttct cacatttctt aatacaagtc
      781 tgttataagt ttcattttta tttttatata acatgtggtt tagtaacaca tttgtatcac
      841 attgctttta tgtgaaagta cttttgtttt tattctaaga attgaaaatt agtatatcat
      901 tttccaaacc atctatgaat gtgtcacaat ttatgctctt tctcactatt agttttatta
      961 ttttgactat attttgtata aataataatt cctttgcgat cgaaaatcag actatcaaaa
     1021 atgagaatga gtttaatatt atagctactg cagacattgg ctgttctata agagctcaag
     1081 aaaatattaa aaatatagag aaattaaatc ctgaattatt ccttgttgca ggagatctta
     1141 gttataaaaa gacacctgat tgttggttta atatgaccaa atcactcgat tcaaaaacta
     1201 agatagcaat aggtaatcat gatgattatg aagaagaagg tgcaaaagga gaaaggttgg
     1261 aacgatcact cttgaatcac tataacctaa ataaaccata ttattctttt gattatcaaa
     1321 atgtccatgt acttgtacta gatacacaat tagagctttc tgttgatacc ctagaatcta
     1381 cagcaataat aaatgaaact actactacta caaatacaat agatgataat aaaggtaaga
     1441 aagataacaa agatgcgaat gataaaaaga aagaaccact ccttgaacgt tttccattag
     1501 tagatatagc agatttactt aaacaaaatt ctattgatgt ggaaattcca ccacttgaca
     1561 agattataga atctaatgca aaagttccag ccctaaaggt agataatgaa caatatcaat
     1621 ttgtacttga agatttagag aaaactagtc aaaataaaaa tattgattgg atatttgtca
     1681 tgtttcataa gccaatgtat tctcctttat ctaaacaatt tgaagagtat attattagag
     1741 acaaatatca acctattttt gacaaatatg gagttgatct agtaatccaa ggtcataatc
     1801 atatttatag cagaactcta cccctttccc taaataaatt agatatttct caacctatag
     1861 tagacaaaaa tagtcgtagt actagtaata ataatatatt tactaatccc caaggaacta
     1921 tctttttggt tgttggagta ggaggagagg aactccatag aatagaaagc gtaccgtatt
     1981 atgttgctaa ccattataac aaaggatttg gttttgcaga cataaaaata gatggcaaaa
     2041 gattagatgt aaaattttat gatattaact taaattgtca attaaaaatc acacagaaaa
     2101 aggaacgaga ggtgatagat cctcaatcat gtttaccacc taccccaggt aatgataaat
     2161 taaaagttat tgattatttt accataatta aataactcag atgatccttg aattgaaatc
     2221 aaaatattcg aattttattt taattttctt atctctcagt attacttttt catttataca
     2281 gtctaaagag attgatgccc aaaatttaaa aaatggaaag atagatctct gttgcacatg
     2341 gggatcagaa ttaaaagaca atgtgttgac ttataatata gaaaaaagta gcaaagatct
     2401 tgaaagaatt accgaatcgg cattttctac atggaaaaac aatctatata atattcattt
     2461 taaaaatgtc aaagataatg atgttg
//
LOCUS       DATCMF010000469         1805 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_462244, whole genome shotgun sequence.
ACCESSION   DATCMF010000469 DATCMF010000000
VERSION     DATCMF010000469.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1805)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1805)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1805
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_462244"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..814)
                     /locus_tag="VIL14_06030"
     CDS             complement(<1..814)
                     /locus_tag="VIL14_06030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HEY8523301.1"
                     /translation="MELHGQFDPKIIENEIRGYKKLIRYDEFFKKEIDIRQNKEIIGY
                     VDGPPTMNGEPHVGHLRGRIIKDLWFRFQTLKQNKIIFRPGWDTQGLPVELQAEKELG
                     LTGNKTENINKVGIQKIVETCKSIVKKYNKKWIEVDELLGMSFDYDNGYWTFHDDYIE
                     REWSYLQTAWNNGILQEGFRVVAYCPSCQTSLSNSEVNQGYTTVEDPSFYYKVRLVDE
                     DAYLIVWTTMPFTLITDELVGVNPDANYVYVEADNQLWIVGETRLEQLMNELH"
     gene            complement(936..1619)
                     /locus_tag="VIL14_06035"
     CDS             complement(936..1619)
                     /locus_tag="VIL14_06035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523302.1"
                     /translation="MLSFSVIFLIIVSLDLEFTSSSKISFGQTSNFTDNNVISSSSSS
                     NSSSSSSNNNNSSGINSSKIETATTGDWLTYSNNKFELKYPPHEWNVEKKLSKFHVLD
                     FKLIKNNPFSFIGISFSSLEDSDKFTNEIILDEAESFGRSTSSSGYKVYEVLEKKLNK
                     YTIDTNPSSFHIVKYKYKDKELEGKLMEIFSIINNRLFTLTYQSTIENFDKDLPVVEK
                     IIDSIKIIN"
BASE COUNT          584 a          280 c          252 g          689 t
ORIGIN      
        1 tatgaagctc attcataagc tgttctaatc ttgtttctcc tacaatccag agttgattat
       61 ctgcttctac gtacacataa ttagcatcag ggtttacccc tacaagttca tctgtaatta
      121 gagtaaatgg cattgtagtc caaactatta gatatgcatc ttcgtcgact aatcgtacct
      181 tataataaaa tgaaggatct tcaacagttg tatatccttg atttacttca gaattactaa
      241 gggatgtttg acatgatgga caatatgcaa ccactcgaaa tccttcttgt aaaattccat
      301 tattccaagc agtttggaga tatgaccatt ctctttcgat atagtcatca tgaaaagtcc
      361 aatacccgtt atcataatca aaagacattc caagcaattc atctacttca atccattttt
      421 tgttgtattt ctttacaatg gatttgcatg tttcaacaat tttttgtatc cccactttgt
      481 taatattttc tgttttattt cctgttaatc ctaattcttt ttctgcctgt aattctacag
      541 gtaaaccttg agtatcccat ccaggtctaa aaattatttt gttctgtttt aaagtttgaa
      601 atcgaaacca taaatctttt attattcgtc ctcttaagtg acctacatgc ggttctccat
      661 tcatggttgg aggaccatcc acgtacccga tgatttcttt attttgtcga atatctattt
      721 cttttttaaa aaattcatca tatctgatta atttcttgta gccacgtatc tcattttcga
      781 tgatcttggg atcgaattgt ccatgaagtt ccataaatat ataagaagat gatgctatcg
      841 aaccatcctt tatgtttttg gataatgata taatacccag ttttagataa taaaataaag
      901 gttattgtaa aataagaaga attttggttt agttattaat ttattatttt gatagagtct
      961 attatttttt caaccactgg taagtcttta tcaaaatttt ctattgtaga ttgataagtt
     1021 aatgtgaata atctgttatt aatgatagaa aaaatttcca taagtttacc ttccagctcc
     1081 ttatctttat atttatattt gacaatatga aaagatgaag gattagtatc tatcgtatat
     1141 ttgtttagtt ttttttctaa aacttcataa accttatatc cagaagatga agtagaccta
     1201 ccaaaacttt cggcctcatc taaaataatt tcatttgtaa acttatcaga atcttcaagt
     1261 gaggaaaatg agattccgat aaaagagaat gggttatttt taattaattt aaaatcaaga
     1321 acatgaaatt ttgacaattt cttttctaca ttccactcat gaggtggata tttaagttca
     1381 aatttattat tggaataagt caaccaatcg cctgttgttg ctgtttcaat tttactacta
     1441 tttatgccac tgctgttgtt gttgttgctg ctgctactac tactgttact gctgctactg
     1501 ctgctaataa cattattatc agtaaaatta gaggtttgac caaatgaaat tttagaacta
     1561 ctagtaaatt ccaaatcaag tgaaacaatg ataagaaaaa ttactgaaaa tgataacatt
     1621 atgcctattg tgtgattgaa cataccttat attgaattga gcaaagattg ttaataatag
     1681 tctttatttt agatacgcaa attagaatgt attagacaaa ccttataact agctaaaatt
     1741 ggagtaagaa ttagtttgtt aggttgatag attgaaaaaa aattattatt atctaactaa
     1801 tgtat
//
LOCUS       DATCMF010000470         1918 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_462362, whole genome shotgun sequence.
ACCESSION   DATCMF010000470 DATCMF010000000
VERSION     DATCMF010000470.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1918)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1918)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1918
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_462362"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..353
                     /locus_tag="VIL14_06040"
     CDS             <1..353
                     /locus_tag="VIL14_06040"
                     /inference="COORDINATES: protein motif:HMM:NF024578.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HEY8523303.1"
                     /translation="GVTGNTLTADIAKREKLDRTQKGVIIDTIVRGSPADLAGLNGSN
                     INEYGEKRGGDIITALDGKPIIKMEDLISYLELNKAVNDNATLSVYRDGEIIDKQITL
                     KSRPEAPITNQTQN"
     gene            complement(628..1359)
                     /locus_tag="VIL14_06045"
     CDS             complement(628..1359)
                     /locus_tag="VIL14_06045"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012345.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 glutamine amidotransferase"
                     /protein_id="HEY8523304.1"
                     /translation="MSKNILVIQNIGCEHLGNLAKLFELDGFNVTILNSQNDLIPTDL
                     ISYSGIIILGGPMSVYDNYAYLKNEQKLIKKAVDMNIPTLGICLGSQLIAEAMGGKVY
                     PGNLKEIGWHDIEITENGSRDIFNGIATLKNTVFQWHGDTFELPESAIILAKSDTYVQ
                     AFRIKTAIGIQFHIEVDESMIDEWIRVYSKEVSDLNLDPSNIISHQKMQILNLLILCK
                     LIYNNFKKMIHYYDDKYNHQEYQKK"
     gene            1525..>1918
                     /locus_tag="VIL14_06050"
     CDS             1525..>1918
                     /locus_tag="VIL14_06050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523305.1"
                     /translation="MWEFYTDIRHLEIITPKKLNLKIINTTNQNILGQETILSAKIII
                     VKRTWHSKITFFQQYEYIDEMLEGPFIKWKHTHTFKRINKNKTEIIDKVEFSLPYGVF
                     GKIGSIFFTKILRHLFEHRKDETIKYLSR"
BASE COUNT          740 a          251 c          270 g          657 t
ORIGIN      
        1 ttggtgtaac tggaaacact ttaactgcag atattgccaa gagggaaaaa ttagatagga
       61 ctcaaaaagg tgttataata gacactatag ttagaggcag tcctgcagat ttagctggat
      121 tgaatggaag taatatcaat gaatatggtg aaaagagagg aggagatatt attacagcct
      181 tagatggtaa accaataatc aagatggaag atttgatatc atatttagaa ttgaacaagg
      241 ctgtaaatga taatgcaaca ttatcggtat acagagatgg agagataata gataaacaaa
      301 ttactttgaa gagtagaccc gaagctccga taacaaatca aacacagaac tagatttttt
      361 tccttctttc cttttctttt ttccatcctt tcttttataa ataaataaat aaataaataa
      421 ataaataaac aaacttgtca tattaactaa ttctctctaa aaaagttaac caggactgac
      481 atttttttag taatgaaaat ataatttgaa aaattggtcg gcattatgaa agataaccca
      541 agtttattag atgcttgaat ttattaaaag aagaaggaaa agaggagaat aggaggagga
      601 ttactttaat gactctatat aaaattatta ttttttttga tattcttgat gattatattt
      661 gtcatcataa taatggatca tttttttaaa attattatat attagtttac ataatattag
      721 aagatttaaa atctgcattt tttggtgaga tatgatatta gatgggtcta aattcaaatc
      781 agatacttct tttgagtaaa ctcttatcca ttcatcgatc atagattcat ctacttcaat
      841 atgaaattgg attcctattg cagtctttat acgaaaagct tgtacatatg tatcagattt
      901 agctaaaatg attgcagact cgggaagctc aaatgtatct ccatgccatt gaaaaactgt
      961 attttttaaa gtagcaattc cattaaatat atctctactt ccattttcag taatttcaat
     1021 atcatgccat cctatctctt ttaagttgcc tggataaact tttccaccca ttgcttcggc
     1081 gattaattga gaaccaagac atatccccaa tgtaggtata ttcatgtcta ctgccttttt
     1141 aattaatttt tgttcatttt ttaagtaagc ataattatca taaaccgaca tgggtccacc
     1201 caatataata atgcctgaat aagaaatgag atctgtagga atcaaatcat tctgagagtt
     1261 taatattgtt acattaaatc catctaattc aaatagctta gcaagattac ctaaatgttc
     1321 acatccaata ttttgaataa ccaaaatatt cttagacaag ataaaataaa ttttcgccaa
     1381 ttcaatataa agctaatata tttaataaat tttaaatttc atagatatta aaatctatga
     1441 caacatttga attagattat ctgtaatatt ttttgattga ttaaattcat acataaattt
     1501 ataataaatg aggatattga aaaagtgtgg gaattttata ctgatattag acatttagaa
     1561 attattaccc caaaaaagtt aaatttgaaa ataattaata ctacaaatca aaatatcctt
     1621 ggtcaagaaa cgattctttc cgctaaaata ataattgtga agagaacttg gcattcaaaa
     1681 ataacttttt ttcaacaata tgaatacata gatgaaatgt tagaaggacc ttttatcaaa
     1741 tggaaacata cacatacatt taaaagaatc aacaagaata agacagaaat tatcgataaa
     1801 gtcgaattta gtttaccata tggagttttt ggaaaaattg gctcaatatt ttttactaaa
     1861 atattaagac atctctttga gcataggaaa gatgaaacta ttaaatattt aagccgat
//
LOCUS       DATCMF010000471         1945 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_594450, whole genome shotgun sequence.
ACCESSION   DATCMF010000471 DATCMF010000000
VERSION     DATCMF010000471.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1945)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1945)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1945
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_594450"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..402)
                     /locus_tag="VIL14_06055"
     CDS             complement(<1..402)
                     /locus_tag="VIL14_06055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523306.1"
                     /translation="MKFTQEIVLQYILANGYEKPKIEIGNYYLKWNEKSYGIYPTEIV
                     ELKEFVTNLIPYFEVIYKLINSLERPRSKERIFLNKKLSPDINFSHRNKEHLVSYDLH
                     MMSDGATFIDRTEKIEIITKDYSTFSTGVNVT"
     gene            complement(468..1583)
                     /locus_tag="VIL14_06060"
     CDS             complement(468..1583)
                     /locus_tag="VIL14_06060"
                     /inference="COORDINATES: protein motif:HMM:TIGR01297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HEY8523307.1"
                     /translation="MHESVKENSKDISDDTNTDPSQHSSNEIENSLRENRNSLTSSSN
                     LVREGIIAGKRIAKISVITLLAIGIVEIVTGYLSGSVVATADGIDSISDATISFIVLL
                     GLRIAHRPADKKFHFGYHKVESFAALMAAIGMVAIGIAIFYNSYQSLIHPHEIKEPIL
                     VMIVLAGASALSLHRAFQMRKIANKYNLLSLKTDARNSIKDGSASVIGFFSILIATQF
                     GFMQMDAIGGMIIAGYIFSVSYISLKRSSLILVDSWQNPQLTDMIKKIISEQFVDERF
                     NIKNVLLRSSGMVDQAEIHIELSGDEPLSDIEMLSLRIEMAIRSKIPSLEKISIIPHS
                     SSELLGKPTSTKMNAIRNIKWRQSAFRIDRNKQSKEN"
BASE COUNT          619 a          317 c          280 g          729 t
ORIGIN      
        1 agttacattc acccctgttg agaaggtact gtaatcttta gttattattt caatcttttc
       61 cgttctatct atgaatgttg caccatctga catcatatgt aaatcgtaac taactaaatg
      121 ctctttatta cgatgcgaaa aatttatgtc tggtgataat tttttattta ggaaaattct
      181 ttctttactt ctcggtcgct ctaagctatt tattaatttg taaattacct caaaatatgg
      241 aataaggttt gttacaaatt cttttagttc aactatttct gtagggtata tcccgtaact
      301 tttttcattc cattttaaat agtagttacc aatttctatt tttggtttct catatccatt
      361 agctaggata tattgtaata ctatctcttg tgtaaatttc aactattagt agatgttttt
      421 caaattatat aaaatatcta actaaatata cttgaaatat ctctcaatta attttctttg
      481 ctttgtttat ttctatcaat tctaaaagct gattgcctcc atttgatatt gcgaatagca
      541 ttcatcttag ttgatgtagg cttacctagt agctctgaag atgaatgagg tataatggat
      601 attttttcta gagaaggaat tttcgagcga attgccattt caatccttaa tgataacatt
      661 tctatatccg agagaggttc atcaccgctt aattctatat gaatttctgc ctggtcaacc
      721 ataccggagg aacgtagtaa tacgttttta atattgaatc tttcatccac aaactgctca
      781 gaaattatct tttttatcat atctgttagt tgaggatttt gccaggaatc cacaagtata
      841 agagatgatc tctttaatga gatataagat acagagaata tgtatcctgc aattatcatt
      901 ccacctattg catccatttg cataaaccca aattgagttg ctataagtat actaaagaaa
      961 cctattactg atgcagagcc gtcttttatt gaatttcggg catctgtttt aagtgaaaga
     1021 agattatact tatttgcaat ctttcgcatt tgaaatgccc tatgtaacga taatgcactt
     1081 gcaccagcca acacaatcat taccaaaatt ggttctttta tttcgtgggg atgtattaat
     1141 gattgatatg aattataaaa gatggctatt cctattgcta ccattcctat agcagccatt
     1201 aacgcagcaa aactttctac cttatgatat ccgaaatgga attttttgtc agcaggccta
     1261 tgagctattc taagtcccag aagcacaata aaggatattg tagcatcaga gatggagtct
     1321 attccgtcag cagtggcgac tacactacca cttagatatc ctgttactat ctcaacaatg
     1381 ccgattgcta aaagcgtaat tacagatatt ttggctatcc ttttgcctgc aattattccc
     1441 tccctaacaa gattagagga agaagtcaat gagtttctgt tttctcttaa tgaattttca
     1501 atttcatttg aagaatgctg cgagggatcg gtgttggtat catcagaaat atctttagaa
     1561 ttttctttca ctgattcatg caattttaaa atatacctta taatagagat taatgatatt
     1621 taaaggtaga tatttaaatt ttatacttat aattatattt tcttcttata caatgggaaa
     1681 caagccgaaa cttcatctaa ttcgctaaag cagttttatg actaaatcag tgaatcaatt
     1741 ctattagcaa acgtttgtaa agaagaggaa gacaaatatt atttaatcgc tacatccaat
     1801 attttcttaa aacaaaacta ttgtttgttt cttttaaaat tataatgaga tattattgta
     1861 cttgctcaat tgcctaatct tattgaataa atattaaatg gaaataatac atcaaaatac
     1921 tttatgtatc taattactct atatt
//
LOCUS       DATCMF010000472         1631 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_594499, whole genome shotgun sequence.
ACCESSION   DATCMF010000472 DATCMF010000000
VERSION     DATCMF010000472.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1631)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1631)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1631
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_594499"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            114..1202
                     /locus_tag="VIL14_06065"
     CDS             114..1202
                     /locus_tag="VIL14_06065"
                     /inference="COORDINATES: protein motif:HMM:NF019474.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEY8523308.1"
                     /translation="MAIGNISGKILYFSATMILIIIITISFHLSLNNTNQLVYGMDTN
                     NYPTVENKTKLFLEKLQQSGGPPLYTLTPTEARNVLSGLQAGPIEKLPAEIENKTIPG
                     GPNGEISIQIVRPQGSGNETLPVVMYTHGGGWVLGNFNTHERLLRELANGAHAAIVFV
                     NYTLSPEAKYPQSLEEAYAATKWISENGQSLNLDSSRLVVAGDSVGGNMATTLALLAK
                     ERGGPPIIFQMLFYPVTDANFNTSSYNTYQEGYFLTRDNMKWFWDNYVSNDTNRKEPT
                     VSPLQASLEQLSGLPPTLIIVGENDVLRDEGEAYAHKLMQAGVPITATRYLGAIHDFM
                     MLNPISDTPAARGAIDQASHTLKELFSK"
BASE COUNT          538 a          282 c          261 g          550 t
ORIGIN      
        1 tgtgtaatgt aaattcatga tagcataata tcttgaaatt atttataaga tataaaatga
       61 aggaaagata attgtatttg tcttgtacaa cttactatat ttcttaatgg ttattggcca
      121 ttgggaatat ttccggaaag atcttgtatt tttcagcaac tatgattcta ataataataa
      181 taacaataag tttccatctt tctttaaata atactaatca attagtatat ggcatggata
      241 ccaacaacta tcctacggta gaaaataaaa ctaaattatt tttagaaaag ctacaacaaa
      301 gtggtggtcc tccactctat actttgactc ccactgaggc tcgtaatgta ctgtctggac
      361 ttcaggcagg cccgatagaa aaacttccag ctgaaataga aaataaaact attccaggtg
      421 gtcctaatgg cgaaatatct attcagatag tccgacccca aggtagtggc aatgaaactc
      481 tacccgttgt aatgtacacc catggtggtg gatgggtgct aggtaatttt aatactcatg
      541 aaagattgtt aagagaactt gctaatggcg cacatgcagc aattgtattt gtcaactata
      601 cgctctctcc tgaagcaaaa tatccacaat ctctagaaga agcatatgct gctacaaaat
      661 ggatttcaga gaatggtcaa agccttaatt tagattcttc acgtttagta gtagcaggtg
      721 atagtgtagg gggcaacatg gccactacac ttgcactact tgccaaagag cgtggtggac
      781 ctcctattat cttccaaatg ctattttatc ccgttacaga tgccaacttt aacacttctt
      841 catataatac atatcaagaa ggatactttc ttacgcgtga taatatgaaa tggttttggg
      901 ataattatgt ttcaaatgat actaatagaa aagaaccaac tgtttctcca ctacaagcat
      961 cacttgagca gcttagtgga ttaccaccta cactcatcat agtaggagaa aatgatgttc
     1021 tacgtgatga aggtgaggca tatgctcata aactaatgca ggctggcgtt cctattactg
     1081 caactcgtta ccttggtgct attcatgact ttatgatgct taatccaatt agtgatactc
     1141 ctgcagcaag aggtgcaata gatcaggctt ctcatacact taaagaatta ttctcaaagt
     1201 agaaaaactc caatatttat tttaattatt aaaaatacat tttttggaac atatattaga
     1261 ttttaaaagt ttcattgttt ataatgattc tttcaagcgg atatacgatt atatttttat
     1321 tatttgtcta gtcttgtcgt gatttctgaa taaataaaaa aaatagtata ttatggcaat
     1381 tttaaaatct aaactagaat tgtatttcta ctctaaacaa tcccatcaaa accatctttt
     1441 tgatatctat tccaatatct gtataaactt gttctgcaaa tgttaattgt attaaggata
     1501 tctgttatct tcaatccctc taattttggt ctgatacacc atcatcttta tctttacaga
     1561 atcttttcta tactacacct ggtgtaatac tcctctttac ttgtagtatt tgtagataaa
     1621 agagtgtaac a
//
LOCUS       DATCMF010000473         1781 bp    DNA     linear   ENV 15-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U7141
            k141_330111, whole genome shotgun sequence.
ACCESSION   DATCMF010000473 DATCMF010000000
VERSION     DATCMF010000473.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37954956
            Sequence Read Archive: SRR13164784
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1781)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1781)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 16:06:15
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,215
            CDSs (total)                      :: 1,194
            Genes (coding)                    :: 1,192
            CDSs (with protein)               :: 1,192
            Genes (RNA)                       :: 21
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 17
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 1 of 2
            Pseudo Genes (incomplete)         :: 1 of 2
            Pseudo Genes (internal stop)      :: 0 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1781
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_330111"
                     /isolate="SMAG_U7141"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="41.8854 N 89.3208 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            100..951
                     /locus_tag="VIL14_06070"
     CDS             100..951
                     /locus_tag="VIL14_06070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEY8523309.1"
                     /translation="MSKRKFGWTGVEVPIIGQGTWMIDGDPETESRAIQTLRLGLDLG
                     MSHIDTAEMYGEGHVEELVGEAIAGRRDEIFLVSKVLPANASYDGTLKACERSLKRLK
                     TDWLDLYLLHWRGSYPLSETMRAMEKLVAEGLVKYIGVSNFDVEDLMEAEQVLQTEQI
                     ACNQVLYNLRDRGIEPRLLPYCSKKRIAVVGYAPFGHGNFPSPSSREGKLLIEIGRRH
                     NRTPKQVALNYLTRHPSTFTIPKTTRSERVKENSGGVGWQLTEDETNEIDRAFPVPPP
                     GTPLGVI"
     gene            complement(1306..>1781)
                     /locus_tag="VIL14_06075"
     CDS             complement(1306..>1781)
                     /locus_tag="VIL14_06075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEY8523310.1"
                     /translation="DIMDYRCNNNWRSQKQNNEISYLTAKEFLIKSIISFIDKEKSSK
                     IYLKCIKIHPDIYTKLVMIKKPFFYNNKENGNIPSWLMKYIMHEEFVDLGVIDHEHWA
                     YRLTNNNDKSIEITKSDLIEFINYGDSTFGLFIFHKDNISISFFSYLQIERIENT"
BASE COUNT          615 a          265 c          315 g          586 t
ORIGIN      
        1 tattcttatt tgtgatataa aaaaaaacat tactgttgct gagaacgttt tagctcaaac
       61 ctgtaatttg aaatttttgg caatgatcgt ataaggaaaa tgagtaagcg taaatttggt
      121 tggactggtg ttgaagttcc aattatcggg caaggaacat ggatgattga tggtgatcct
      181 gaaactgaat caagagccat acagacatta aggttaggct tagatctagg aatgagtcat
      241 attgacactg cggagatgta tggagagggg catgtagagg aattagtagg agaagccata
      301 gcaggaagac gtgatgaaat atttctagtt agtaaggtat taccagctaa cgcttcctat
      361 gacggaacct tgaaggcttg tgaaaggagt ttgaaacgtt taaagacaga ttggcttgat
      421 ctatatttgc ttcattggcg tggcagttat cctctgagtg agacaatgcg tgctatggaa
      481 aaacttgtag ccgaaggtct agtgaaatac attggtgtta gcaattttga tgttgaagat
      541 ttaatggaag cagaacaagt actacaaact gagcaaatcg catgtaatca ggtactttac
      601 aatttacgag atcgcggaat tgaaccacgt ttgcttccat attgcagtaa aaagagaata
      661 gctgtagtgg gatatgctcc ttttggacat ggcaactttc catctccttc tagtagagaa
      721 gggaagttac taatagaaat tggcagaaga cataatcgaa ctcctaaaca ggtagcactg
      781 aattatctga cccgtcatcc atctaccttc actattccaa agacaacaag atcagagaga
      841 gtgaaagaga atagtggagg agtgggatgg caactcacag aagatgaaac taacgagatt
      901 gatcgtgcat ttccagtacc acctcctggt actccactag gagtaattta aataagttta
      961 catttaaagg atacaaaaga gccctttcct ttctcatttc aatttaatac cttttttaaa
     1021 gtgtgttata tcttcattta agcgagcaga aatattaacg atggaatatg atacaattaa
     1081 ggttcatgca gataatcaat ctaggtaact tcgaaaataa taatcaattc taaagaaaca
     1141 tttaacattg tttcataatt tcaataatag atgcgcataa aattattaaa aaatcaattt
     1201 aaaatttaaa attttttaaa ttttattctt gaatcattct taattatttc caatttgtta
     1261 gcaataaaaa ttatctaatc tatatcaata aacacactta ttgaattaag tattctcaat
     1321 tctttctatc tgaagataac taaagaaaga tatggaaata ttatctttat gaaatataaa
     1381 tagtccaaac gtggagtctc cataattaat gaattctatc aaatcagact tcgttatttc
     1441 aatactttta tcattattgt ttgttagacg ataagcccag tgctcgtgat ctataactcc
     1501 gagatcaaca aattcttcat gcatgatata tttcatcagc caagaaggaa tatttccatt
     1561 ctctttatta ttataaaaaa atggtttttt tatcataact aacttggtat agatatctgg
     1621 atgaattttt atacacttta aatatatttt tgaactcttc tccttatcga taaatgagat
     1681 aatagatttg atcagaaatt ccttggctgt taaataagat atttcattat tttgtttttg
     1741 cgatctccaa ttattattgc atctatagtc cattatatca t
//
